BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034486
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P47211|GALR1_HUMAN Galanin receptor type 1 OS=Homo sapiens GN=GALR1 PE=2 SV=3
Length = 349
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 10 HLVHHLIEECLVFNMSKEECMEALSKH------ANIKPVITSTVWKELEKENKEFFEAYA 63
H + HL E VF ++ + ++ H +++ P+I + + + K K+ F+ +
Sbjct: 263 HHIIHLWAEFGVFPLTPASFLFRITAHCLAYSNSSVNPIIYAFLSENFRKAYKQVFKCHI 322
Query: 64 RKNAERATVMETRERIE 80
RK++ + E++ RI+
Sbjct: 323 RKDSHLSDTKESKSRID 339
>sp|Q5GTR3|PNP_WOLTR Polyribonucleotide nucleotidyltransferase OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=pnp PE=3 SV=1
Length = 755
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 34 SKHANIKPVITSTVWKELEKENKEFFEAYARK-NAERATVMET 75
+K + P+ S + ++LEK +K+F EAY++ ERA +ET
Sbjct: 228 NKFDSFAPIDISDIMQDLEKHSKDFEEAYSQTVKQERAQTLET 270
>sp|B0BQC2|ARLY_ACTPJ Argininosuccinate lyase OS=Actinobacillus pleuropneumoniae serotype
3 (strain JL03) GN=argH PE=3 SV=1
Length = 458
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 13 HHLIEECLVFNMSKEECMEALS--KHANIKPVITSTVWKELEKEN-KEFFEAYARKNAER 69
HH++ E +V+ +SK E +EALS + PVI V+ L E+ E A N ER
Sbjct: 385 HHIVGEAVVYAISKREPLEALSVAEFKQFHPVIDEDVYPILSLESCLEKRSAKGGVNPER 444
Query: 70 ATVMETRERIEKILAN 85
RE IE N
Sbjct: 445 -----VREAIEAAKVN 455
>sp|B3GY67|ARLY_ACTP7 Argininosuccinate lyase OS=Actinobacillus pleuropneumoniae serotype
7 (strain AP76) GN=argH PE=3 SV=1
Length = 458
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 13 HHLIEECLVFNMSKEECMEALS--KHANIKPVITSTVWKELEKEN-KEFFEAYARKNAER 69
HH++ E +V+ +SK E +EALS + PVI V+ L E+ E A N ER
Sbjct: 385 HHIVGEAVVYAISKREPLEALSVAEFKQFHPVIDEDVYPILSLESCLEKRSAKGGVNPER 444
Query: 70 ATVMETRERIEKILAN 85
RE IE N
Sbjct: 445 -----VREAIEAAKVN 455
>sp|A3N1I1|ARLY_ACTP2 Argininosuccinate lyase OS=Actinobacillus pleuropneumoniae serotype
5b (strain L20) GN=argH PE=3 SV=1
Length = 458
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 13 HHLIEECLVFNMSKEECMEALS--KHANIKPVITSTVWKELEKEN-KEFFEAYARKNAER 69
HH++ E +V+ +SK E +EALS + PVI V+ L E+ E A N ER
Sbjct: 385 HHIVGEAVVYAISKREPLEALSVAEFKQFHPVIDEDVYPILSLESCLEKRSAKGGVNPER 444
Query: 70 ATVMETRERIEKILAN 85
RE IE N
Sbjct: 445 -----VREAIEAAKVN 455
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,347,284
Number of Sequences: 539616
Number of extensions: 1007439
Number of successful extensions: 4476
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4469
Number of HSP's gapped (non-prelim): 30
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)