Query 034486
Match_columns 93
No_of_seqs 87 out of 103
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 04:54:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di0_A Activating signal coint 85.9 1.5 5.3E-05 28.0 4.8 38 6-44 14-60 (71)
2 2es9_A Putative cytoplasmic pr 78.5 1.2 4.2E-05 30.9 2.4 36 29-64 56-100 (115)
3 2ozb_B U4/U6 small nuclear rib 75.0 2.6 9E-05 32.1 3.6 48 1-48 102-151 (260)
4 1b8z_A Protein (histonelike pr 74.5 4.4 0.00015 25.1 4.0 30 24-53 1-30 (90)
5 1mul_A NS2, HU-2, DNA binding 72.9 5.8 0.0002 24.6 4.3 29 24-52 1-29 (90)
6 3pkr_A FLIG, flagellar motor s 69.1 21 0.00073 27.2 7.5 62 1-64 112-179 (279)
7 3icx_A PRE mRNA splicing prote 68.6 4.5 0.00015 31.0 3.6 47 1-47 88-136 (255)
8 2o97_B NS1, HU-1, DNA-binding 67.9 7.1 0.00024 24.3 3.9 28 24-51 1-28 (90)
9 1owf_A IHF-alpha, integration 67.7 7.3 0.00025 24.7 4.0 29 24-52 3-31 (99)
10 1p71_A DNA-binding protein HU; 67.1 7 0.00024 24.5 3.8 28 24-51 1-28 (94)
11 3c4i_A DNA-binding protein HU 66.1 7.4 0.00025 24.7 3.8 28 24-51 1-28 (99)
12 2nnw_A NOP5/NOP56 related prot 61.5 7 0.00024 31.4 3.6 47 1-47 222-270 (376)
13 1exe_A Transcription factor 1; 61.1 7.8 0.00027 24.7 3.1 29 24-52 1-29 (99)
14 1owf_B IHF-beta, integration H 59.3 14 0.00047 23.0 4.1 28 24-51 1-29 (94)
15 3rhi_A DNA-binding protein HU; 58.6 7.9 0.00027 24.3 2.8 29 23-51 3-31 (93)
16 3doe_B ADP-ribosylation factor 58.4 8 0.00027 28.1 3.1 45 6-53 69-116 (165)
17 2vof_A BCL-2-related protein A 58.0 21 0.00073 24.5 5.2 40 47-86 45-87 (157)
18 3c18_A Nucleotidyltransferase- 57.8 6.3 0.00022 30.8 2.7 42 37-83 168-209 (290)
19 4hw4_A Induced myeloid leukemi 56.5 47 0.0016 23.0 8.1 68 8-86 4-87 (157)
20 3pla_A NOP5, PRE mRNA splicing 56.2 9.7 0.00033 30.9 3.6 49 1-49 221-271 (388)
21 2kua_A BCL-2-like protein 10; 55.5 15 0.00051 26.0 4.1 37 47-85 50-86 (170)
22 2e9x_A DNA replication complex 53.8 7.2 0.00025 26.7 2.2 52 15-68 71-123 (149)
23 2f4m_B UV excision repair prot 53.6 25 0.00084 21.5 4.4 27 40-66 23-49 (61)
24 3hjl_A Flagellar motor switch 51.5 45 0.0016 25.8 6.6 61 1-63 167-234 (329)
25 4fhr_B Flagellar motor switch 49.2 51 0.0017 24.0 6.3 61 1-63 54-121 (216)
26 1pve_A HHR23B, UV excision rep 47.6 25 0.00086 22.2 3.8 29 38-66 23-51 (72)
27 2np2_A HBB; protein-DNA comple 45.9 20 0.0007 23.0 3.3 28 24-51 9-41 (108)
28 2hl7_A Cytochrome C-type bioge 43.1 42 0.0014 21.6 4.5 36 3-38 39-74 (84)
29 2iie_A Integration HOST factor 40.0 82 0.0028 22.6 6.1 31 23-53 46-76 (204)
30 2kw0_A CCMH protein; oxidoredu 38.0 55 0.0019 21.4 4.4 36 3-38 36-71 (90)
31 3e98_A GAF domain of unknown f 37.4 7 0.00024 29.0 0.0 12 53-64 41-52 (252)
32 2p6v_A Transcription initiatio 36.4 72 0.0025 22.0 5.0 37 5-41 39-75 (114)
33 1ni5_A Putative cell cycle pro 35.5 1.4E+02 0.0047 23.2 7.1 42 22-64 157-212 (433)
34 1xn7_A Hypothetical protein YH 34.6 45 0.0015 20.6 3.5 25 31-55 20-44 (78)
35 2w3l_A BCL2-XL, apoptosis regu 33.5 1.1E+02 0.0036 20.4 6.9 66 10-86 5-79 (144)
36 3lxp_A Non-receptor tyrosine-p 33.4 43 0.0015 23.4 3.6 25 10-34 278-306 (318)
37 1tpx_A Prion protein, major pr 31.8 27 0.00093 24.3 2.3 21 5-25 89-110 (121)
38 2h7b_A Core-binding factor, ML 30.9 88 0.003 21.3 4.7 37 5-41 24-60 (105)
39 1b6c_B TGF-B superfamily recep 30.9 47 0.0016 23.0 3.4 29 7-35 301-333 (342)
40 1o0l_A Apoptosis regulator BCL 29.9 43 0.0015 23.6 3.1 41 46-86 53-95 (188)
41 3fyr_A Sporulation inhibitor S 28.8 89 0.003 18.4 3.9 33 23-55 5-39 (48)
42 1n69_A Saposin B; lipid bindin 28.0 99 0.0034 18.4 5.9 54 1-54 1-55 (81)
43 2k6x_A Sigma-A, RNA polymerase 28.0 1E+02 0.0034 18.4 4.5 46 10-55 9-56 (72)
44 2i2o_A EIF4G-like protein; pro 27.2 1.6E+02 0.0054 21.2 5.8 62 15-83 130-201 (224)
45 2q9q_C DNA replication complex 27.2 30 0.001 24.5 1.9 52 15-68 71-123 (196)
46 2keb_A DNA polymerase subunit 26.8 69 0.0024 21.7 3.6 42 10-53 45-90 (101)
47 1p6r_A Penicillinase repressor 26.7 80 0.0027 18.2 3.5 34 22-55 22-55 (82)
48 1tbx_A ORF F-93, hypothetical 26.6 92 0.0031 18.3 3.9 33 22-54 21-53 (99)
49 2wvi_A Mitotic checkpoint seri 26.6 1.7E+02 0.0058 20.6 7.6 14 12-25 42-55 (164)
50 4aez_C MAD3, mitotic spindle c 26.3 2E+02 0.0068 21.3 7.4 14 12-25 96-109 (223)
51 4a3y_A Raucaffricine-O-beta-D- 25.9 21 0.00073 29.1 1.0 44 6-64 114-168 (540)
52 4e2i_2 DNA polymerase alpha su 25.7 64 0.0022 20.7 3.1 24 10-33 22-45 (78)
53 1b0n_B Protein (SINI protein); 25.1 77 0.0026 19.0 3.2 22 14-35 17-38 (57)
54 2k02_A Ferrous iron transport 24.8 66 0.0022 20.5 3.0 26 30-55 19-44 (87)
55 3a2k_A TRNA(Ile)-lysidine synt 24.6 2.4E+02 0.0081 22.0 6.8 42 22-64 168-223 (464)
56 2vso_E Eukaryotic initiation f 24.6 57 0.002 24.0 3.1 50 27-83 211-274 (284)
57 3ed3_A Protein disulfide-isome 24.1 38 0.0013 24.7 2.0 35 24-64 253-287 (298)
58 3tqn_A Transcriptional regulat 23.9 1.2E+02 0.0042 18.9 4.2 46 10-55 13-61 (113)
59 3uim_A Brassinosteroid insensi 23.5 97 0.0033 21.4 3.9 40 5-45 274-317 (326)
60 1k78_A Paired box protein PAX5 23.4 1.1E+02 0.0038 19.3 4.0 29 23-52 108-140 (149)
61 2vkl_A RV0948C/MT0975; helical 23.4 30 0.001 21.9 1.2 56 8-63 20-81 (90)
62 3ta9_A Glycoside hydrolase fam 23.4 32 0.0011 27.7 1.6 36 28-64 110-155 (458)
63 1xd7_A YWNA; structural genomi 23.0 73 0.0025 20.8 3.1 27 29-55 25-51 (145)
64 2q0t_A Putative gamma-carboxym 22.9 1.6E+02 0.0055 20.8 5.2 57 24-84 9-69 (263)
65 2ahq_A Sigma-54, RNA polymeras 22.8 98 0.0034 19.4 3.5 30 10-40 19-53 (76)
66 3l7w_A Putative uncharacterize 22.4 84 0.0029 19.5 3.2 31 24-54 23-53 (108)
67 2p1m_A SKP1-like protein 1A; F 21.5 1.4E+02 0.0047 20.1 4.3 31 25-59 129-159 (160)
68 3t8r_A Staphylococcus aureus C 21.3 93 0.0032 20.5 3.4 27 29-55 30-56 (143)
69 2y75_A HTH-type transcriptiona 21.2 1E+02 0.0034 19.4 3.4 26 30-55 29-54 (129)
70 1p4o_A Insulin-like growth fac 21.0 83 0.0028 21.6 3.2 38 10-49 267-308 (322)
71 2nru_A Interleukin-1 receptor- 20.9 1.1E+02 0.0039 20.7 3.8 30 6-35 270-303 (307)
72 4hz8_A Beta-glucosidase; BGLB, 20.1 36 0.0012 27.3 1.3 37 27-64 101-147 (444)
No 1
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.88 E-value=1.5 Score=28.02 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=31.1
Q ss_pred HHHHHHHHHH--------HHHHHHhh-CCHHHHHHHHHhhcCCCchhH
Q 034486 6 ASYIHLVHHL--------IEECLVFN-MSKEECMEALSKHANIKPVIT 44 (93)
Q Consensus 6 ~~~I~~VQ~L--------IErCLqly-Msk~E~v~~L~~~a~I~P~~T 44 (93)
.+.|..|+.| |.+||..| -+-|.+|.+|.+. ++.|...
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L~ 60 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS 60 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence 3567777765 89999998 8999999999985 8877653
No 2
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=78.48 E-value=1.2 Score=30.88 Aligned_cols=36 Identities=28% Similarity=0.532 Sum_probs=26.4
Q ss_pred HHHHHHhhcCCCchhHHHH--HHHHHH-------hCHHHHHHHHh
Q 034486 29 CMEALSKHANIKPVITSTV--WKELEK-------ENKEFFEAYAR 64 (93)
Q Consensus 29 ~v~~L~~~a~I~P~~T~~V--W~~LEk-------eNpeFFkaY~~ 64 (93)
-|.+=-.+-|-+|.||..| |.+--+ .|||||..|.+
T Consensus 56 dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstYM~ 100 (115)
T 2es9_A 56 VVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQ 100 (115)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHH
T ss_pred HHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHH
Confidence 3444455679999999987 654322 69999999976
No 3
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=75.04 E-value=2.6 Score=32.13 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhc-CCCchhHHHHH
Q 034486 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHA-NIKPVITSTVW 48 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a-~I~P~~T~~VW 48 (93)
||.. |..|+..|+.+.++.+.++=-++++.++|..+. .|-|.+|.+|=
T Consensus 102 ~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG 151 (260)
T 2ozb_B 102 QGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIG 151 (260)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 5553 789999999999999999999999999999864 58999998763
No 4
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=74.55 E-value=4.4 Score=25.10 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LEk 53 (93)
||+.|+++.+.++.++.+.-...|++.|-+
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTILE 30 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 899999999999999988777776665543
No 5
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=72.86 E-value=5.8 Score=24.59 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LE 52 (93)
||+.|+++.+.++.++.+.-...|.+.|-
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALESTL 29 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999998888876666655543
No 6
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=69.07 E-value=21 Score=27.24 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=46.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCH------HHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHh
Q 034486 1 MDDSSASYIHLVHHLIEECLVFNMSK------EECMEALSKHANIKPVITSTVWKELEKENKEFFEAYAR 64 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk------~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~ 64 (93)
|+.-|.+-++.|-..+++||....+. -+.+-.+.+ ++++..-..|...|++.||++.+.=..
T Consensus 112 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN--~~d~~~e~~iL~~L~~~dpelAe~Ir~ 179 (279)
T 3pkr_A 112 LGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFN--RLGQKSAKTTLARIESVDNKLAGAIKE 179 (279)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHH--TSCHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHH--cCChHHHHHHHHHHHhhCHHHHHHHHH
Confidence 45668899999999999999987654 233333333 677888889999999999999887543
No 7
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=68.60 E-value=4.5 Score=30.97 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC-CCchhHHHH
Q 034486 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHAN-IKPVITSTV 47 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~-I~P~~T~~V 47 (93)
||-. |.+|+..|+.+.++.+.++=.++++.++|..+.+ |-|.+|.+|
T Consensus 88 ~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLv 136 (255)
T 3icx_A 88 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALV 136 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHh
Confidence 5543 7889999999999999999999999999998655 899998876
No 8
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=67.92 E-value=7.1 Score=24.26 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~L 51 (93)
||+.|+++.+.++.++.+.-...|.+.|
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDAI 28 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999999888877666555443
No 9
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=67.65 E-value=7.3 Score=24.67 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LE 52 (93)
||+.|+++.+.++.++.+.-...|++.|-
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~ 31 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFF 31 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998887777766554
No 10
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=67.14 E-value=7 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~L 51 (93)
||+.|+++.+.++.++.+.-...|.+.|
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAA 28 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999998888777666555443
No 11
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=66.12 E-value=7.4 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~L 51 (93)
||+.|+++.+.+..++...-...|.+.|
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~ 28 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENV 28 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8899999999998888777666665544
No 12
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=61.46 E-value=7 Score=31.43 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhc-CCCchhHHHH
Q 034486 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHA-NIKPVITSTV 47 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a-~I~P~~T~~V 47 (93)
||.. |..|+..|+.+.++.+.++=.++++.++|..+. .|-|.+|.+|
T Consensus 222 ~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLv 270 (376)
T 2nnw_A 222 MGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALV 270 (376)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 5553 788999999999999999999999999999864 5899998876
No 13
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=61.08 E-value=7.8 Score=24.68 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHH
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LE 52 (93)
||+.|+++.+.+..++.+.-...|.+.|-
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~ 29 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFE 29 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998877776665543
No 14
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=59.28 E-value=14 Score=23.00 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHhh-cCCCchhHHHHHHHH
Q 034486 24 MSKEECMEALSKH-ANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~E~v~~L~~~-a~I~P~~T~~VW~~L 51 (93)
||+.|+++.+.+. .++.+.-...|.+.|
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~~ 29 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEM 29 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8999999999988 588777666555443
No 15
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=58.64 E-value=7.9 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=18.6
Q ss_pred hCCHHHHHHHHHhhcCCCchhHHHHHHHH
Q 034486 23 NMSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 23 yMsk~E~v~~L~~~a~I~P~~T~~VW~~L 51 (93)
-||+.|+++.+.++.++...-...|.+.|
T Consensus 3 ~mtk~eLi~~ia~~~~lsk~~~~~~v~~~ 31 (93)
T 3rhi_A 3 AMNKTELIKNVAQNAEISQKEATVVVQTV 31 (93)
T ss_dssp ----CHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 38999999999998888776665555443
No 16
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=58.44 E-value=8 Score=28.09 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHh---hCCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034486 6 ASYIHLVHHLIEECLVF---NMSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 6 ~~~I~~VQ~LIErCLql---yMsk~E~v~~L~~~a~I~P~~T~~VW~~LEk 53 (93)
.+|+.+|-.+||.-|.- ..|.++++.+|+++ ...+...||+.|-.
T Consensus 69 ~eY~~LVE~~Le~~L~e~i~Gfsme~F~~~l~~~---~~e~~~dIfe~Lla 116 (165)
T 3doe_B 69 NEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH---KDEVAGDIFDMLLT 116 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHTTT---CC--CCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc---chhhHHHHHHHHHH
Confidence 46888999999988887 78999999999975 34566666655543
No 17
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=58.01 E-value=21 Score=24.49 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHHhCHHHHHHHHhcH---HHHHhHHHHHHHHHHHHhcc
Q 034486 47 VWKELEKENKEFFEAYARKN---AERATVMETRERIEKILANS 86 (93)
Q Consensus 47 VW~~LEkeNpeFFkaY~~~~---~~~~~~~~~~~~iq~~~s~~ 86 (93)
|=.+|+++++++|+.+-.+. ........+.+...+++++.
T Consensus 45 ~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~dg 87 (157)
T 2vof_A 45 VAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFEDG 87 (157)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcCC
Confidence 34567899999999998765 34455556777888888764
No 18
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=57.84 E-value=6.3 Score=30.84 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=29.3
Q ss_pred cCCCchhHHHHHHHHHHhCHHHHHHHHhcHHHHHhHHHHHHHHHHHH
Q 034486 37 ANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKIL 83 (93)
Q Consensus 37 a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~~~~~~~~~~~~iq~~~ 83 (93)
.|.-|.+ +||++...=||+|+|.|..- -.+++...++|+..+
T Consensus 168 ~G~~pe~--tvw~qv~~i~~~iyKLyeEL---~~s~E~lekrielll 209 (290)
T 3c18_A 168 KGAHPEV--VVWEQARLDDPDVYKLYEQL---LLSEETLEQRIHLAL 209 (290)
T ss_dssp TTCCCCT--THHHHHHHHCHHHHHHHHHH---HTCCSCHHHHHHHHH
T ss_pred cCCcCch--hHHHHHHhcCHHHHHHHHHH---hcCcccHHHHHHHHH
Confidence 4777877 68999999999999999542 223334445555444
No 19
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=56.50 E-value=47 Score=23.05 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHhhC--------------CHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhcHHH--HHh
Q 034486 8 YIHLVHHLIEECLVFNM--------------SKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAE--RAT 71 (93)
Q Consensus 8 ~I~~VQ~LIErCLqlyM--------------sk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~~--~~~ 71 (93)
-......||-+||.-++ ...+++.+|. .|=.+||+.++.+|+.+-..... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr-----------~vgdele~~~~~~f~~m~~~L~it~~~a 72 (157)
T 4hw4_A 4 LYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLR-----------RVGDGVQRNHETAFQGMLRKLDIKNEDD 72 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHH-----------HHHHHHHHHTHHHHHHHHHHHCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 34566778888888877 3557777777 45578999999999998754322 334
Q ss_pred HHHHHHHHHHHHhcc
Q 034486 72 VMETRERIEKILANS 86 (93)
Q Consensus 72 ~~~~~~~iq~~~s~~ 86 (93)
...+.+...+++++.
T Consensus 73 ~~~F~~Va~elF~dG 87 (157)
T 4hw4_A 73 VKSLSRVMIHVFSDG 87 (157)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhccC
Confidence 445777878888764
No 20
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=56.17 E-value=9.7 Score=30.88 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=42.4
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC-CCchhHHHHHH
Q 034486 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHAN-IKPVITSTVWK 49 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~-I~P~~T~~VW~ 49 (93)
||.. |.+|+..|+.+.++.+.++=.++++.++|..+.+ |-|.+|.+|=.
T Consensus 221 mG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~ 271 (388)
T 3pla_A 221 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGP 271 (388)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhcc
Confidence 5553 7899999999999999999999999999998655 99999987743
No 21
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=55.48 E-value=15 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.496 Sum_probs=25.4
Q ss_pred HHHHHHHhCHHHHHHHHhcHHHHHhHHHHHHHHHHHHhc
Q 034486 47 VWKELEKENKEFFEAYARKNAERATVMETRERIEKILAN 85 (93)
Q Consensus 47 VW~~LEkeNpeFFkaY~~~~~~~~~~~~~~~~iq~~~s~ 85 (93)
|=.+||+.++.||+.+-. .......-+.++-.+++++
T Consensus 50 v~~ele~~~~~~f~~~~~--~~~~a~~~f~~Va~elF~d 86 (170)
T 2kua_A 50 VTRQIQQEHQEFFSSFCE--SRGNRLELVKQMADKLLSK 86 (170)
T ss_dssp HHHHHHHHHHHHHHHHHT--TTSCHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHhhhC--CcchHHHHHHHHHHHHhcc
Confidence 457899999999999972 2233444556666666665
No 22
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=53.83 E-value=7.2 Score=26.71 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=37.5
Q ss_pred HHHHHHHhh-CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhcHHH
Q 034486 15 LIEECLVFN-MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAE 68 (93)
Q Consensus 15 LIErCLqly-Msk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~~ 68 (93)
-+-|||.-| +.+-+-++.+.-+.+ +.+...++..|-.+=.+||+.|....+.
T Consensus 71 RnKrcLlAYl~~Rl~kI~~~~w~~g--~~L~~~~~~~LS~~E~~f~~~Y~~lL~~ 123 (149)
T 2e9x_A 71 RNRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKRSLAT 123 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHhcCCHHHHHHHHHHHHHHHH
Confidence 346899988 466777777776544 2334567888888889999999776554
No 23
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=53.64 E-value=25 Score=21.50 Aligned_cols=27 Identities=11% Similarity=0.447 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHHHhCHHHHHHHHhcH
Q 034486 40 KPVITSTVWKELEKENKEFFEAYARKN 66 (93)
Q Consensus 40 ~P~~T~~VW~~LEkeNpeFFkaY~~~~ 66 (93)
+|..-..+.++|.+.||+.++......
T Consensus 23 NP~~L~~lLqql~~~nP~l~~~I~~n~ 49 (61)
T 2f4m_B 23 NPSLLPALLQQIGRENPQLLQQISQHQ 49 (61)
T ss_dssp CGGGHHHHHHHHHHHCHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHhHCHHHHHHHHHCH
Confidence 799999999999999999998775553
No 24
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=51.51 E-value=45 Score=25.85 Aligned_cols=61 Identities=10% Similarity=0.166 Sum_probs=45.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHH
Q 034486 1 MDDSSASYIHLVHHLIEECLVFNMSK-------EECMEALSKHANIKPVITSTVWKELEKENKEFFEAYA 63 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk-------~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~ 63 (93)
|+.-|.+-++.|-..+++||....+. -+.+-.+.+ ++++..-..|...|++.||++.+.=.
T Consensus 167 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN--~~d~~~e~~il~~L~~~dpela~~Ir 234 (329)
T 3hjl_A 167 LENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLN--TLDKETRELILQSIGQEDPLLEERIR 234 (329)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH--HSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHh--cCChHHHHHHHHHHHHhCHHHHHHHH
Confidence 45668899999999999999875432 233444443 46777778999999999999987653
No 25
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=49.25 E-value=51 Score=23.97 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=43.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCHH-------HHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHH
Q 034486 1 MDDSSASYIHLVHHLIEECLVFNMSKE-------ECMEALSKHANIKPVITSTVWKELEKENKEFFEAYA 63 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk~-------E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~ 63 (93)
|+.-|.+-++.|-..+++||....+.. +.+-.+.+ +.++..-..|...|++.||++.+.=.
T Consensus 54 l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN--~~~~~~e~~il~~L~~~d~ela~~I~ 121 (216)
T 4fhr_B 54 LERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMN--NLDRTTEKKIMDKLVQENPELADEIR 121 (216)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHH--HSCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHH--cCChhHHHHHHHHHHhcCHHHHHHHH
Confidence 455678889999999999998776653 22222333 46777778899999999999977543
No 26
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=47.63 E-value=25 Score=22.22 Aligned_cols=29 Identities=10% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCCchhHHHHHHHHHHhCHHHHHHHHhcH
Q 034486 38 NIKPVITSTVWKELEKENKEFFEAYARKN 66 (93)
Q Consensus 38 ~I~P~~T~~VW~~LEkeNpeFFkaY~~~~ 66 (93)
.=+|..-..|.++|.+.||+.++......
T Consensus 23 qqNP~lL~~lLqqL~~~NPqL~q~I~~n~ 51 (72)
T 1pve_A 23 QQNPSLLPALLQQIGRENPQLLQQISQHQ 51 (72)
T ss_dssp TTCGGGHHHHHHHHHTTCHHHHHHHHTTH
T ss_pred HHCHHHHHHHHHHHHhHCHHHHHHHHHCH
Confidence 34899999999999999999998775553
No 27
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=45.90 E-value=20 Score=23.00 Aligned_cols=28 Identities=7% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCHHHHHHHHH-----hhcCCCchhHHHHHHHH
Q 034486 24 MSKEECMEALS-----KHANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~E~v~~L~-----~~a~I~P~~T~~VW~~L 51 (93)
||+.|+++.+. ++.++...-...|.+.|
T Consensus 9 mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~ 41 (108)
T 2np2_A 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAF 41 (108)
T ss_dssp EEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHH
Confidence 89999999999 77888777666665544
No 28
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=43.09 E-value=42 Score=21.58 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC
Q 034486 3 DSSASYIHLVHHLIEECLVFNMSKEECMEALSKHAN 38 (93)
Q Consensus 3 ~~s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~ 38 (93)
||.+....-...+|-+=|.-..|.+||+++|-.+.|
T Consensus 39 dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 39 DSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 455566666778888889999999999999988776
No 29
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=40.02 E-value=82 Score=22.56 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=24.3
Q ss_pred hCCHHHHHHHHHhhcCCCchhHHHHHHHHHH
Q 034486 23 NMSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 23 yMsk~E~v~~L~~~a~I~P~~T~~VW~~LEk 53 (93)
-||+.|+++.+.+..++.+.-...|.+.|-+
T Consensus 46 ~Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~ 76 (204)
T 2iie_A 46 GLTKAEMSEYLFDKLGLSKRDAKELVELFFE 76 (204)
T ss_dssp SBCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3899999999999988888777766655443
No 30
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=37.97 E-value=55 Score=21.45 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC
Q 034486 3 DSSASYIHLVHHLIEECLVFNMSKEECMEALSKHAN 38 (93)
Q Consensus 3 ~~s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~ 38 (93)
||.+....-...+|-+=|.-..|.+||+++|-.+.|
T Consensus 36 dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 36 DSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 555566666778888889999999999999998876
No 31
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=37.36 E-value=7 Score=29.03 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred HhCHHHHHHHHh
Q 034486 53 KENKEFFEAYAR 64 (93)
Q Consensus 53 keNpeFFkaY~~ 64 (93)
.+|||||.-+-.
T Consensus 41 ~~~PdFf~~~~~ 52 (252)
T 3e98_A 41 SQHPEFFVEHDE 52 (252)
T ss_dssp ------------
T ss_pred HhCCHHHhhCHH
Confidence 578999987743
No 32
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=36.40 E-value=72 Score=22.02 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCc
Q 034486 5 SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKP 41 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P 41 (93)
|.+....|+.||..++-.-++.||--..|++..|-.|
T Consensus 39 spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 39 STETAANVXELVQNLLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred ChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCCC
Confidence 6788899999999999999999999999999666554
No 33
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=35.47 E-value=1.4e+02 Score=23.24 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=31.0
Q ss_pred hhCCHHHHHHHHHhhcCCCch---------h-----HHHHHHHHHHhCHHHHHHHHh
Q 034486 22 FNMSKEECMEALSKHANIKPV---------I-----TSTVWKELEKENKEFFEAYAR 64 (93)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~---------~-----T~~VW~~LEkeNpeFFkaY~~ 64 (93)
+.++++|+..++..+ ||.+. + ...|...|++.||.|-.+-..
T Consensus 157 l~~~k~eI~~y~~~~-gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r 212 (433)
T 1ni5_A 157 LARTRGELVQWARQY-DLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATAR 212 (433)
T ss_dssp GSCCHHHHHHHHHHT-TCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-CCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHH
Confidence 368999999988864 66542 2 235788899999998777654
No 34
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=34.65 E-value=45 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 31 EALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 31 ~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
..|.++++|.|.--....++|+++.
T Consensus 20 ~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 20 AQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4466788999999888899998875
No 35
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=33.50 E-value=1.1e+02 Score=20.44 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhh-------CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhcHH--HHHhHHHHHHHHH
Q 034486 10 HLVHHLIEECLVFN-------MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNA--ERATVMETRERIE 80 (93)
Q Consensus 10 ~~VQ~LIErCLqly-------Msk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~--~~~~~~~~~~~iq 80 (93)
.+|.+-|.-||+.- -...++..+|.. +=.+||+.+|.+|+..-.+.. .......+.+...
T Consensus 5 ~L~~dyi~~~l~~~g~~~~~~~~p~~~~~~Lr~-----------~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~ 73 (144)
T 2w3l_A 5 EIVMKYIHYKLSQRGYEWDAGADSEVVHKTLRE-----------AGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVE 73 (144)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---CHHHHHHHHH-----------HHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcccHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 45666677777632 123455555553 338899999999999976543 2445566667777
Q ss_pred HHHhcc
Q 034486 81 KILANS 86 (93)
Q Consensus 81 ~~~s~~ 86 (93)
+++++.
T Consensus 74 elF~dG 79 (144)
T 2w3l_A 74 ELFRDG 79 (144)
T ss_dssp HHTTTC
T ss_pred HHhcCC
Confidence 777654
No 36
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=33.44 E-value=43 Score=23.45 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHh----hCCHHHHHHHHH
Q 034486 10 HLVHHLIEECLVF----NMSKEECMEALS 34 (93)
Q Consensus 10 ~~VQ~LIErCLql----yMsk~E~v~~L~ 34 (93)
..+.++|.+||+. ..|-+|+++.|.
T Consensus 278 ~~l~~li~~~l~~dP~~Rps~~ell~~L~ 306 (318)
T 3lxp_A 278 AEVYHLMKNCWETEASFRPTFENLIPILK 306 (318)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 3477889999875 456677777776
No 37
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=31.80 E-value=27 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHH-HHHHhhCC
Q 034486 5 SASYIHLVHHLIE-ECLVFNMS 25 (93)
Q Consensus 5 s~~~I~~VQ~LIE-rCLqlyMs 25 (93)
+..+++.+..||+ .|.+.||-
T Consensus 89 te~e~rvl~rvi~emC~~qy~~ 110 (121)
T 1tpx_A 89 TETDIKIMERVVEQMCITQYQR 110 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999997 79998873
No 38
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=30.93 E-value=88 Score=21.27 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCc
Q 034486 5 SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKP 41 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P 41 (93)
|.+....|+.||..++-.-++.||--..|++..|-.|
T Consensus 24 ~pev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 60 (105)
T 2h7b_A 24 SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPL 60 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHSSSSC
T ss_pred ChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCC
Confidence 5778899999999999999999999999999666554
No 39
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=30.89 E-value=47 Score=23.02 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHH----hhCCHHHHHHHHHh
Q 034486 7 SYIHLVHHLIEECLV----FNMSKEECMEALSK 35 (93)
Q Consensus 7 ~~I~~VQ~LIErCLq----lyMsk~E~v~~L~~ 35 (93)
.....+.+||.+||+ ...|-+|+++.|.+
T Consensus 301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~ 333 (342)
T 1b6c_B 301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQ 333 (342)
T ss_dssp HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence 455678999999995 45677788877764
No 40
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=29.94 E-value=43 Score=23.63 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHHhCHHHHHHHHhcHH--HHHhHHHHHHHHHHHHhcc
Q 034486 46 TVWKELEKENKEFFEAYARKNA--ERATVMETRERIEKILANS 86 (93)
Q Consensus 46 ~VW~~LEkeNpeFFkaY~~~~~--~~~~~~~~~~~iq~~~s~~ 86 (93)
.+=.+||+.|+++|+..-.+.. .......+.+...+++++.
T Consensus 53 ~~gdele~~~~~~f~~~~~~l~i~~~~~~~~F~~Va~elF~dG 95 (188)
T 1o0l_A 53 AAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGG 95 (188)
T ss_dssp HHHHHHHHHCSCSHHHHHHHTTTCSSTTHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCC
Confidence 4668899999999998865332 2334555666667777553
No 41
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=28.77 E-value=89 Score=18.43 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=23.8
Q ss_pred hCCHHHHHHHHHh--hcCCCchhHHHHHHHHHHhC
Q 034486 23 NMSKEECMEALSK--HANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 23 yMsk~E~v~~L~~--~a~I~P~~T~~VW~~LEkeN 55 (93)
+||.+..+++-.+ .-|.+|.|..++-+++++-|
T Consensus 5 ~LSDe~LiesY~~A~el~L~~dFI~LL~~Ei~RR~ 39 (48)
T 3fyr_A 5 KLSDELLIESYFKATEMNLNRDFIELIENEIKRRS 39 (48)
T ss_dssp TSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4666666665443 57999999999988887643
No 42
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=28.02 E-value=99 Score=18.39 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCH-HHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034486 1 MDDSSASYIHLVHHLIEECLVFNMSK-EECMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk-~E~v~~L~~~a~I~P~~T~~VW~~LEke 54 (93)
||+..-..=..|=..||.-|..+-|. ++++.+|.+.=+.=|..-...=+.+-.+
T Consensus 1 ~~~~~C~~C~~~V~~ve~~l~~n~t~~~~I~~~l~~~C~~lp~~~~~~C~~~V~~ 55 (81)
T 1n69_A 1 MDGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADICKNYISQ 55 (81)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHGGGGCTTHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 44444444456667888899999998 9999999987676665434444444443
No 43
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=27.96 E-value=1e+02 Score=18.40 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHHHHHHH-HHhhCCHHHHHHHHHhhcC-CCchhHHHHHHHHHHhC
Q 034486 10 HLVHHLIEEC-LVFNMSKEECMEALSKHAN-IKPVITSTVWKELEKEN 55 (93)
Q Consensus 10 ~~VQ~LIErC-LqlyMsk~E~v~~L~~~a~-I~P~~T~~VW~~LEkeN 55 (93)
..++.||++= =+-|+|-+|+.++|..... ++|.--..+...|++.+
T Consensus 9 ~~~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~g 56 (72)
T 2k6x_A 9 RRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHG 56 (72)
T ss_dssp HHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCC
Confidence 4678888744 4568999999999986544 78887777777776654
No 44
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=27.22 E-value=1.6e+02 Score=21.19 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=41.5
Q ss_pred HHHHHHHhhCCH-----HHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhcHHHH-----HhHHHHHHHHHHHH
Q 034486 15 LIEECLVFNMSK-----EECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAER-----ATVMETRERIEKIL 83 (93)
Q Consensus 15 LIErCLqlyMsk-----~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~~~-----~~~~~~~~~iq~~~ 83 (93)
.|-.|++.-|.. +|-++.|.. +-.+|=..|+..++.....|..+.... ..-.+.+-+|+++|
T Consensus 130 i~~~cl~~Ll~~~~~p~Ee~lEcl~~-------LL~tvG~~Ld~~~~~~md~~f~~l~~~l~~~~~ls~RiRfml~dli 201 (224)
T 2i2o_A 130 PVYDCLFRLAQSDALKNEEEVDCLVL-------QLHRIGDQLEKMNVQLMDELFNLLRDGFLLQEDLSSMGRLLLLEIL 201 (224)
T ss_dssp HHHHHHHHHTSHHHHTSHHHHHHHHH-------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHH
Confidence 455666655543 566666664 344788999999999999998875551 22455666666666
No 45
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=27.18 E-value=30 Score=24.49 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=36.1
Q ss_pred HHHHHHHhh-CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhcHHH
Q 034486 15 LIEECLVFN-MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAE 68 (93)
Q Consensus 15 LIErCLqly-Msk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~~ 68 (93)
-+.|||.-| +.+-+-++.+.-+.+ +.....++..|-.+=.+||+.|....+.
T Consensus 71 R~Kr~l~aYlr~Rl~KI~~~~w~~~--~~l~~~~~~~LS~~E~~y~~~y~~ll~~ 123 (196)
T 2q9q_C 71 RNRRCTVAYLYDRLLRIRALRWEYG--SILPNALRFHMAAEEMEWFNNYKRSLAT 123 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--SSCCHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 346899888 567777777776544 3333456777888888999999775544
No 46
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.83 E-value=69 Score=21.67 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH----hhcCCCchhHHHHHHHHHH
Q 034486 10 HLVHHLIEECLVFNMSKEECMEALS----KHANIKPVITSTVWKELEK 53 (93)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~E~v~~L~----~~a~I~P~~T~~VW~~LEk 53 (93)
..|..++|-|+....+.+|.|+.+- ...|++|-.. -..++|.
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~e--nL~~FEh 90 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSE--ILNSFEH 90 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHH--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHH--HHHHHHH
Confidence 5789999999999999999887542 2346666544 3445553
No 47
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=26.65 E-value=80 Score=18.22 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=28.1
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 22 FNMSKEECMEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
-.+|..|+.+.|....++.|.-...+.+.|++..
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kG 55 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG 55 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCC
Confidence 4689999999998766788888888889988753
No 48
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=26.63 E-value=92 Score=18.34 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=28.5
Q ss_pred hhCCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034486 22 FNMSKEECMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P~~T~~VW~~LEke 54 (93)
-.++..|+.+.|.+..+|.|.-...+-+.|++.
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 457888888888889999999999999999985
No 49
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.59 E-value=1.7e+02 Score=20.56 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhhCC
Q 034486 12 VHHLIEECLVFNMS 25 (93)
Q Consensus 12 VQ~LIErCLqlyMs 25 (93)
+..|+|||+..+.+
T Consensus 42 L~~lLErc~~~f~~ 55 (164)
T 2wvi_A 42 MSTLLERAVEALQG 55 (164)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhh
Confidence 35588999887643
No 50
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.33 E-value=2e+02 Score=21.32 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhCC
Q 034486 12 VHHLIEECLVFNMS 25 (93)
Q Consensus 12 VQ~LIErCLqlyMs 25 (93)
+..++|||+..+.+
T Consensus 96 L~~lLErc~~~F~~ 109 (223)
T 4aez_C 96 LVTLLERCTREFVR 109 (223)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 34689999987554
No 51
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=25.92 E-value=21 Score=29.14 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCchhHHHHH---HHHH--------HhCHHHHHHHHh
Q 034486 6 ASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVW---KELE--------KENKEFFEAYAR 64 (93)
Q Consensus 6 ~~~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I~P~~T~~VW---~~LE--------keNpeFFkaY~~ 64 (93)
.+-|+.=.+||..|+. .||+|.+|..=| +-|+ ++..++|..|-.
T Consensus 114 ~~Gl~fY~~lid~l~~---------------~GIeP~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~Ya~ 168 (540)
T 4a3y_A 114 KEGINYYNNLIDGLLA---------------NGIKPFVTLFHWDVPQALEDEYGGFLSPRIVDDFCEYAE 168 (540)
T ss_dssp HHHHHHHHHHHHHHHH---------------TTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------cCCccceeccCCCCcHHHHhccCCcCChHHHHHHHHHHH
Confidence 3445555555555554 499999987544 2343 456788888854
No 52
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=25.68 E-value=64 Score=20.72 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Q 034486 10 HLVHHLIEECLVFNMSKEECMEAL 33 (93)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~E~v~~L 33 (93)
..|..|+|-|+....+-+|+|..+
T Consensus 22 ~v~eKl~ElC~~y~~~~~e~V~ew 45 (78)
T 4e2i_2 22 ALIEKLVELCVQYGQNEEGMVGEL 45 (78)
T ss_dssp HHHHHHHTHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 588999999999999999998765
No 53
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=25.13 E-value=77 Score=19.03 Aligned_cols=22 Identities=32% Similarity=0.212 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCHHHHHHHHHh
Q 034486 14 HLIEECLVFNMSKEECMEALSK 35 (93)
Q Consensus 14 ~LIErCLqlyMsk~E~v~~L~~ 35 (93)
.||.+--.+.||.+||-+.|.-
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 4788889999999999999874
No 54
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=24.83 E-value=66 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 30 MEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 30 v~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
+..|.++++|.|.-.....+.|+++.
T Consensus 19 v~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 19 AKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34567788999999888899998865
No 55
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=24.63 E-value=2.4e+02 Score=22.02 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=31.0
Q ss_pred hhCCHHHHHHHHHhhcCCCc---------hhHH-----HHHHHHHHhCHHHHHHHHh
Q 034486 22 FNMSKEECMEALSKHANIKP---------VITS-----TVWKELEKENKEFFEAYAR 64 (93)
Q Consensus 22 lyMsk~E~v~~L~~~a~I~P---------~~T~-----~VW~~LEkeNpeFFkaY~~ 64 (93)
++++++|+..++..+ ||.+ .++. .|...|++.||.+-.+...
T Consensus 168 l~~~k~eI~~ya~~~-gl~~~~d~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r 223 (464)
T 3a2k_A 168 LAVSRAEIEAYCRQM-GLSPRCDPSNEKDDYTRNRFRHHIVPLLRQENPRLHERFQQ 223 (464)
T ss_dssp GGSCHHHHHHHHHHT-CCSSCSCTTCCCTTSHHHHHHHTHHHHHHHHCSCHHHHHHH
T ss_pred ccCcHHHHHHHHHHc-CCCeEECCCCCCccchHHHHHHHHHHHHHHHCchHHHHHHH
Confidence 478999999988764 6643 3443 3677899999998877654
No 56
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=24.62 E-value=57 Score=23.96 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHhC----------HHHHHHHHhcHHHHH----hHHHHHHHHHHHH
Q 034486 27 EECMEALSKHANIKPVITSTVWKELEKEN----------KEFFEAYARKNAERA----TVMETRERIEKIL 83 (93)
Q Consensus 27 ~E~v~~L~~~a~I~P~~T~~VW~~LEkeN----------peFFkaY~~~~~~~~----~~~~~~~~iq~~~ 83 (93)
++-|+.|.. +-.+|-..|++.. +...+.|..+..... ...++.-||+.++
T Consensus 211 e~~iE~l~~-------lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dli 274 (284)
T 2vso_E 211 EETLESVVE-------LLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIK 274 (284)
T ss_dssp HHHHHHHHH-------HHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 555666554 4558899999877 468888877654432 3355666666665
No 57
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=24.14 E-value=38 Score=24.67 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHh
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYAR 64 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~ 64 (93)
++++++++.|.++++..|.+..+..++ .|++.|..
T Consensus 253 ~~~~~i~~fi~~~~~~~p~~~~ls~~~------~~~~~~~~ 287 (298)
T 3ed3_A 253 INKNDISKFLRDTFSITPNEGPFSRRS------EYIAYLKT 287 (298)
T ss_dssp CCHHHHHHHHHHHHTCCCSSSTTSHHH------HHHHHHHH
T ss_pred CCHHHHHHHHHhhcCCCCCcCCCchHH------HHHHHHhc
Confidence 789999999999999999998877443 78777754
No 58
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=23.89 E-value=1.2e+02 Score=18.89 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCCHHH---HHHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 10 HLVHHLIEECLVFNMSKEE---CMEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~E---~v~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
+....+.+.-+...+...+ -...|.+++||.+.--.-+++.|+.+.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G 61 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDN 61 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3344444444444565555 467888899999999999999999864
No 59
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=23.51 E-value=97 Score=21.37 Aligned_cols=40 Identities=8% Similarity=0.045 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHhhcCCCchhHH
Q 034486 5 SASYIHLVHHLIEECLVF----NMSKEECMEALSKHANIKPVITS 45 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLql----yMsk~E~v~~L~~~a~I~P~~T~ 45 (93)
+......+.++|.+||+. ..|-+|+++.|... ++...+..
T Consensus 274 ~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~-~~~~~~~~ 317 (326)
T 3uim_A 274 KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD-GLAERWEE 317 (326)
T ss_dssp CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS-SCSSSCC-
T ss_pred CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc-chhhhhhh
Confidence 355667899999999975 67889999999863 55544433
No 60
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=23.44 E-value=1.1e+02 Score=19.32 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=18.6
Q ss_pred hCCHHHHHHHHHhhc----CCCchhHHHHHHHHH
Q 034486 23 NMSKEECMEALSKHA----NIKPVITSTVWKELE 52 (93)
Q Consensus 23 yMsk~E~v~~L~~~a----~I~P~~T~~VW~~LE 52 (93)
.+|..++...|..+. |+.+. ..+||+-|.
T Consensus 108 ~~s~~~i~~~l~~~~~~~~g~~~S-~sTV~r~L~ 140 (149)
T 1k78_A 108 TMFAWEIRDRLLAERVCDNDTVPS-VSSINRIIR 140 (149)
T ss_dssp TCCHHHHHHHHHHTTSSCTTTSCC-HHHHHHHHH
T ss_pred chhHHHHHHHHHHhcccccCCCcC-HHHHHHHHH
Confidence 478899998887654 54333 345665554
No 61
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=23.42 E-value=30 Score=21.94 Aligned_cols=56 Identities=7% Similarity=-0.089 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCC---CchhHHHHHHHHHHhC---HHHHHHHH
Q 034486 8 YIHLVHHLIEECLVFNMSKEECMEALSKHANI---KPVITSTVWKELEKEN---KEFFEAYA 63 (93)
Q Consensus 8 ~I~~VQ~LIErCLqlyMsk~E~v~~L~~~a~I---~P~~T~~VW~~LEkeN---peFFkaY~ 63 (93)
.|+.+-.-|=.=|...|.--+=|-.+....|. +|.=-..|...+.+.+ |+|.+..+
T Consensus 20 ~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~p~~~e~i~ 81 (90)
T 2vkl_A 20 EIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLL 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34443333333333333333444444443332 4555566777776655 66666654
No 62
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=23.36 E-value=32 Score=27.69 Aligned_cols=36 Identities=39% Similarity=0.773 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCCchhHHHHH---HHHHH-------hCHHHHHHHHh
Q 034486 28 ECMEALSKHANIKPVITSTVW---KELEK-------ENKEFFEAYAR 64 (93)
Q Consensus 28 E~v~~L~~~a~I~P~~T~~VW---~~LEk-------eNpeFFkaY~~ 64 (93)
.+++.|.+ .||+|.+|..=| +.|++ +..++|..|-.
T Consensus 110 ~lid~l~~-~GIeP~vTL~H~dlP~~L~~~GGW~nr~~v~~F~~YA~ 155 (458)
T 3ta9_A 110 RLVDNLLK-ANIRPMITLYHWDLPQALQDKGGWTNRDTAKYFAEYAR 155 (458)
T ss_dssp HHHHHHHH-TTCEEEEEEESSCCBHHHHTTTGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEEecCCCCCHhHHhcCCCCCHHHHHHHHHHHH
Confidence 44445554 499999998544 24443 44567777754
No 63
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=23.04 E-value=73 Score=20.81 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.4
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 29 CMEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 29 ~v~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
.++.|++..+|+|.+..-|..+|.+..
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aG 51 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKAD 51 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 777888888999999998888887653
No 64
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold, structural genomics, joint center for struct genomics, JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Probab=22.93 E-value=1.6e+02 Score=20.83 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHHHHHHhcHHH---H-HhHHHHHHHHHHHHh
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAE---R-ATVMETRERIEKILA 84 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFFkaY~~~~~~---~-~~~~~~~~~iq~~~s 84 (93)
+..+++.+.+.++.|.-|. .|..+.+..|+|+++|..--.. + ....++.++|.-.+|
T Consensus 9 ~~~~~~~~~~~~~~G~~~~----~~~~~~~~~P~~~~~~~~~~~~~~~~~~L~~~~reLi~la~~ 69 (263)
T 2q0t_A 9 PDPSRLRDELVRLHGKASP----EWDSLVRLDPRFVDAYLKFAGVPQRRNHLDDKTRAFIALAAD 69 (263)
T ss_dssp CCHHHHHHHHHHHHSSCCH----HHHHHHHHCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcchhH----HHHHHHHhCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4567788888888886443 4677788999999998653222 1 246667777766555
No 65
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=22.84 E-value=98 Score=19.38 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhh-----CCHHHHHHHHHhhcCCC
Q 034486 10 HLVHHLIEECLVFN-----MSKEECMEALSKHANIK 40 (93)
Q Consensus 10 ~~VQ~LIErCLqly-----Msk~E~v~~L~~~a~I~ 40 (93)
..|+++|...+.-- +|.+++++.|.++ ||.
T Consensus 19 ~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~ 53 (76)
T 2ahq_A 19 GELMKLIKEIVENEDKRKPYSDQEIANILKEK-GFK 53 (76)
T ss_dssp HHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSC
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCC
Confidence 44666777766655 9999999999876 775
No 66
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.39 E-value=84 Score=19.52 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhhcCCCchhHHHHHHHHHHh
Q 034486 24 MSKEECMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 24 Msk~E~v~~L~~~a~I~P~~T~~VW~~LEke 54 (93)
|.--|++..|.+..+|.|.-...+.+.||++
T Consensus 23 ~~gyel~~~l~~~~~i~~~tly~~L~~Le~~ 53 (108)
T 3l7w_A 23 SYGYDISQTIKLIASIKESTLYPILKKLEKA 53 (108)
T ss_dssp EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhCCCcChHHHHHHHHHHC
Confidence 4445889999888999999999999999986
No 67
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.45 E-value=1.4e+02 Score=20.12 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=24.9
Q ss_pred CHHHHHHHHHhhcCCCchhHHHHHHHHHHhCHHHH
Q 034486 25 SKEECMEALSKHANIKPVITSTVWKELEKENKEFF 59 (93)
Q Consensus 25 sk~E~v~~L~~~a~I~P~~T~~VW~~LEkeNpeFF 59 (93)
|.+| +.+-+||.=.||.-=..++.+||+=.|
T Consensus 129 t~ee----ir~~f~I~nd~t~eEe~~ir~en~w~~ 159 (160)
T 2p1m_A 129 TPEE----IRTTFNIKNDFTPEEEEEVRRENQWAF 159 (160)
T ss_dssp CHHH----HHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred CHHH----HHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence 6666 455679999999988899999998655
No 68
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=21.29 E-value=93 Score=20.48 Aligned_cols=27 Identities=7% Similarity=0.244 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 29 CMEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 29 ~v~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
.++.|.+..+|.|.+..-|..+|.+..
T Consensus 30 s~~~IA~~~~i~~~~l~kil~~L~~aG 56 (143)
T 3t8r_A 30 SLKSIAEENNLSDLYLEQLVGPLRNAG 56 (143)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 356778888999999999988888753
No 69
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=21.19 E-value=1e+02 Score=19.36 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCchhHHHHHHHHHHhC
Q 034486 30 MEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 30 v~~L~~~a~I~P~~T~~VW~~LEkeN 55 (93)
+..|.+..||.|.+..-+.+.|++..
T Consensus 29 ~~ela~~~~i~~~~v~~il~~L~~~G 54 (129)
T 2y75_A 29 LKSIAQTNNLSEHYLEQLVSPLRNAG 54 (129)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45677788999999999999998864
No 70
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=21.02 E-value=83 Score=21.60 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHh----hCCHHHHHHHHHhhcCCCchhHHHHHH
Q 034486 10 HLVHHLIEECLVF----NMSKEECMEALSKHANIKPVITSTVWK 49 (93)
Q Consensus 10 ~~VQ~LIErCLql----yMsk~E~v~~L~~~a~I~P~~T~~VW~ 49 (93)
..+.++|.+||.. ..|-+|++..|.+. +.|.|+..-|.
T Consensus 267 ~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~--~~~~~~~~~~~ 308 (322)
T 1p4o_A 267 DMLFELMRMCWQYNPKMRPSFLEIISSIKEE--MEPGFREVSFY 308 (322)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG--SCTTHHHHCST
T ss_pred HHHHHHHHHHcCCCcccCcCHHHHHHHHHHh--hccCCcccccc
Confidence 3478899999964 57888999999864 55777765544
No 71
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=20.88 E-value=1.1e+02 Score=20.73 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHh----hCCHHHHHHHHHh
Q 034486 6 ASYIHLVHHLIEECLVF----NMSKEECMEALSK 35 (93)
Q Consensus 6 ~~~I~~VQ~LIErCLql----yMsk~E~v~~L~~ 35 (93)
......+.++|.+||.. ..|-+|+++.|.+
T Consensus 270 ~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~ 303 (307)
T 2nru_A 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303 (307)
T ss_dssp HHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence 34456788899999976 3455666666653
No 72
>4hz8_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosid barrel, carbohydrate/sugar binding; HET: BGC; 1.14A {Uncultured bacterium} PDB: 4hz7_A* 4hz6_A* 3fj0_A* 3cmj_A 3fiz_A* 3fiy_A*
Probab=20.12 E-value=36 Score=27.29 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCchhHHHHH---HHHH-------HhCHHHHHHHHh
Q 034486 27 EECMEALSKHANIKPVITSTVW---KELE-------KENKEFFEAYAR 64 (93)
Q Consensus 27 ~E~v~~L~~~a~I~P~~T~~VW---~~LE-------keNpeFFkaY~~ 64 (93)
+.+|+.|.+ +||+|.+|..=| +.|+ ++..++|..|-.
T Consensus 101 ~~lid~l~~-~GI~p~vtL~H~dlP~~L~~~GGW~nr~~v~~F~~Ya~ 147 (444)
T 4hz8_A 101 RRLVEGLHK-RDILPMATLYHWDLPQWVEDEGGWLSRESASRFAEYTH 147 (444)
T ss_dssp HHHHHHHHH-TTCEEEEEEESSCCBHHHHHTTGGGSTHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCEEEEEeCCCCCCHHHhhCcCCCChHHHHHHHHHHH
Confidence 455555554 499999987432 1343 445677888754
Done!