BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034489
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 16 KRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYV 75
T +++IL A RD K+ R+G Y + L N+ ++TD ++
Sbjct: 162 NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD-----HM 216
Query: 76 SQCPREVKT 84
+ PR+V +
Sbjct: 217 DRLPRDVAS 225
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With
Gld-1 Fbea
pdb|3QGC|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With
Gld-1 Fbea A7u Mutant
Length = 413
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 46 TRKGGYVVVQEKLPNYVVPDLTDF---KLKSYVSQ 77
T GY QEKL N++ +TD K YV Q
Sbjct: 95 TNDDGYTKRQEKLKNFISSQMTDMCLDKFACYVIQ 129
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex
pdb|3V6Y|A Chain A, Crystal Structure Of Fbf-2 In Complex With A Mutant Gld-1
Fbea13 Rna
pdb|3V74|A Chain A, Crystal Structure Of Fbf-2 In Complex With Gld-1 Fbea13
Rna
Length = 413
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 46 TRKGGYVVVQEKLPNYVVPDLTDFKLKSY 74
T GY QEKL N++ +TD L +
Sbjct: 95 TNDDGYTKRQEKLKNFISSQMTDMCLDKF 123
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX
pdb|3K5Y|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea Complex
pdb|3K5Z|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea G4a Mutant Complex
pdb|3K61|A Chain A, Crystal Structure Of Fbf-2FOG-1 Fbea Complex
pdb|3K62|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbeb Complex
pdb|3K64|A Chain A, Crystal Structure Of Fbf-2FEM-3 Pme Complex
Length = 412
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 46 TRKGGYVVVQEKLPNYVVPDLTDFKLKSY 74
T GY QEKL N++ +TD L +
Sbjct: 94 TNDDGYTKRQEKLKNFISSQMTDMCLDKF 122
>pdb|3IZS|J Chain J, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O5H|L Chain L, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3J16|H Chain H, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 165
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 18 TSSLDILSSKRAPRDYYKGKNCKSTG 43
SSL I + K PRD K KN K +G
Sbjct: 77 ASSLVITALKEPPRDRKKDKNVKHSG 102
>pdb|3JYW|K Chain K, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus
Ribosome At 8.9a Resolution
pdb|3J2K|8 Chain 8, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 138
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 18 TSSLDILSSKRAPRDYYKGKNCKSTG 43
SSL I + K PRD K KN K +G
Sbjct: 71 ASSLVITALKEPPRDRKKDKNVKHSG 96
>pdb|1S1I|K Chain K, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex
From Yeast Obtained By Docking Atomic Models For Rna
And Protein Components Into A 11.7 A Cryo-Em Map. This
File, 1s1i, Contains 60s Subunit. The 40s Ribosomal
Subunit Is In File 1s1h
Length = 131
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 18 TSSLDILSSKRAPRDYYKGKNCKSTG 43
SSL I + K PRD K KN K +G
Sbjct: 65 ASSLVITALKEPPRDRKKDKNVKHSG 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,868,319
Number of Sequences: 62578
Number of extensions: 109027
Number of successful extensions: 176
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)