BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034489
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DJI4|RM41A_XENLA 39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis
GN=mrpl41-a PE=2 SV=1
Length = 135
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
+GLI I R R + +SK+ P Y KG+ K G+ T G +V V+E +P +V
Sbjct: 1 MGLISKIARGLVRG-ADRMAECTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 59
Query: 63 VPDLTDFKLKSYVS 76
VPDLT FKLK YVS
Sbjct: 60 VPDLTGFKLKPYVS 73
>sp|Q6INF3|RM41B_XENLA 39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis
GN=mrpl41-b PE=2 SV=1
Length = 135
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
+GLI I R R + +SK P Y KG+ K G+ T G +V V+E +P +V
Sbjct: 1 MGLITKIARGLVRG-ADRMAECTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 59
Query: 63 VPDLTDFKLKSYVS 76
VPDLT FKLK YVS
Sbjct: 60 VPDLTGFKLKPYVS 73
>sp|Q5BJX1|RM41_RAT 39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus
GN=Mrpl41 PE=1 SV=1
Length = 134
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 24 LSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS-QCPREV 82
+SKR PR + K + K TGF+T + +V ++E +P +VVPDLT FKLK YV+ + P +
Sbjct: 21 WTSKRGPRTFTKSRGAKKTGFYTNRK-FVQIKEMVPEFVVPDLTGFKLKPYVNYRAPAGI 79
Query: 83 KTAEAAE 89
T A+
Sbjct: 80 DTPLTAK 86
>sp|Q9CQN7|RM41_MOUSE 39S ribosomal protein L41, mitochondrial OS=Mus musculus
GN=Mrpl41 PE=2 SV=1
Length = 135
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
+G + + + R + +SKR PR + K + K TG +T +V ++E +P +V
Sbjct: 1 MGFLTAVTQGLVRG-ADRMSKWTSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFV 59
Query: 63 VPDLTDFKLKSYVS 76
VPDLT FKLK YV+
Sbjct: 60 VPDLTGFKLKPYVN 73
>sp|Q8IXM3|RM41_HUMAN 39S ribosomal protein L41, mitochondrial OS=Homo sapiens
GN=MRPL41 PE=1 SV=1
Length = 137
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYY--KGKNCKSTGFHTRKGGYVVVQEKLPN 60
+G++ R R + +SKR PR + KG+ K GF T +V ++E +P
Sbjct: 1 MGVLAAAARCLVRG-ADRMSKWTSKRGPRSFRGRKGRGAKGIGFLTSGWRFVQIKEMVPE 59
Query: 61 YVVPDLTDFKLKSYVS 76
+VVPDLT FKLK YVS
Sbjct: 60 FVVPDLTGFKLKPYVS 75
>sp|Q502B0|RM41_DANRE 39S ribosomal protein L41, mitochondrial OS=Danio rerio GN=mrpl41
PE=2 SV=1
Length = 135
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 3 LGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYV 62
+G++ + R F R + +SKR PR +YK + + TG T ++ ++ +P +
Sbjct: 1 MGVLSALARGFVRG-ADRMAEWTSKRGPRTFYKSRGARPTGIVTSSRKFIPIRAMIPEFA 59
Query: 63 VPDLTDFKLKSYVS 76
VP+L F LK+YVS
Sbjct: 60 VPNLEGFNLKAYVS 73
>sp|P36526|RM27_YEAST 54S ribosomal protein L27, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL27 PE=1
SV=2
Length = 146
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 24 LSSKRAPRDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKSYVS 76
L++K+ + YKG G HT+ GGYV+ +K+ YV PD+ +F+LK YV+
Sbjct: 43 LTTKQGNKTMYKGTRASGIGRHTKFGGYVINWKKVRTYVTPDMVNFELKPYVN 95
>sp|Q291A0|RM41_DROPS 39S ribosomal protein L41, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mRpL41 PE=3 SV=1
Length = 166
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 49 GGYVVVQEKLPNYVVPDLTDFKLKSYVSQCPREVKTAE 86
G +V + EK+P+ +VPDLTD KLK YVS EV +E
Sbjct: 73 GKFVEIPEKIPDIIVPDLTDCKLKPYVSYKAPEVVQSE 110
>sp|Q7JZM8|RM41_DROME 39S ribosomal protein L41, mitochondrial OS=Drosophila melanogaster
GN=mRpL41 PE=2 SV=1
Length = 166
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 49 GGYVVVQEKLPNYVVPDLTDFKLKSYVS 76
G YV + EK+P+ +VPDLT KLK YVS
Sbjct: 73 GQYVEIPEKIPDIIVPDLTGCKLKPYVS 100
>sp|P90993|RM41_CAEEL 39S ribosomal protein L41, mitochondrial OS=Caenorhabditis elegans
GN=mrpl-41 PE=3 SV=1
Length = 180
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 26 SKRAPRDYYKGKNCKSTGFHTRKGG-YVVVQEKLPNYVVPDLTDFKLKSYVS 76
K P++ ++ ++ GFH K G +V V+E VVP+L FKL+ YVS
Sbjct: 61 QKLNPKELHRYTGVQADGFHDEKTGEFVPVKEMRSELVVPNLDGFKLRPYVS 112
>sp|Q5WRL1|RM27_SCHPO 54S ribosomal protein L27, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl27 PE=3 SV=1
Length = 93
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 20 SLDILSSKRAP------RDYYKGKNCKSTGFHTRKGGYVVVQEKLPNYVVPDLTDFKLKS 73
SL ++R P YYKG G TR GG++V ++ +V P D +L
Sbjct: 4 SLLCFGARRLPMTTKLGHQYYKGTRTGKMGQKTRHGGFLVQWSRVRTFVPPS-GDCELLP 62
Query: 74 YVSQCPREVKTAEAAEP 90
+VS R ++ + P
Sbjct: 63 FVS---RRIQATKGTYP 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,272,695
Number of Sequences: 539616
Number of extensions: 1375147
Number of successful extensions: 2214
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2199
Number of HSP's gapped (non-prelim): 14
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)