Query 034489
Match_columns 93
No_of_seqs 104 out of 178
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 04:58:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034489.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034489hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vqqa1 d.17.4.5 (A:27-138) Pe 14.6 30 0.0022 21.0 1.3 18 48-67 94-111 (112)
2 d1xd7a_ a.4.5.55 (A:) Hypothet 10.8 88 0.0064 18.2 2.7 26 4-34 33-58 (127)
3 d1i8ya_ g.3.16.1 (A:) N-termin 8.4 46 0.0033 16.0 0.4 13 62-74 7-19 (28)
4 d1rkxa_ c.2.1.2 (A:) CDP-gluco 7.5 28 0.0021 22.8 -0.9 16 30-45 2-20 (356)
5 d2j0151 g.41.8.5 (5:2-60) Ribo 7.2 79 0.0057 17.2 1.1 9 31-39 48-56 (59)
6 d2qam01 g.41.8.5 (0:1-56) Ribo 6.1 74 0.0054 17.1 0.6 9 31-39 45-53 (56)
7 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 6.0 95 0.0069 16.8 1.1 8 32-39 49-56 (58)
8 d1ylfa1 a.4.5.55 (A:5-142) Hyp 6.0 1.5E+02 0.011 17.3 2.1 26 4-34 38-63 (138)
9 d1hska2 d.146.1.1 (A:209-317) 5.7 73 0.0053 19.1 0.4 23 34-56 49-71 (109)
10 d1d1da1 a.28.3.1 (A:151-230) R 5.1 1E+02 0.0074 17.6 0.8 12 23-34 2-14 (80)
No 1
>d1vqqa1 d.17.4.5 (A:27-138) Penicillin binding protein 2a (PBP2A), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=14.63 E-value=30 Score=20.98 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=14.7
Q ss_pred eccEEEccCCCCeeeCCCCC
Q 034489 48 KGGYVVVQEKLPNYVVPDLT 67 (93)
Q Consensus 48 ~G~f~i~~~kvp~fVVPdL~ 67 (93)
.+.|.|+|+ |++|.|+|.
T Consensus 94 ~~~Wkv~W~--ps~I~P~L~ 111 (112)
T d1vqqa1 94 DGMWKLDWD--HSVIIPGMQ 111 (112)
T ss_dssp SSSEEECCC--GGGTSTTCC
T ss_pred CCCEEEEeC--ccccCcCcC
Confidence 457889997 889999885
No 2
>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}
Probab=10.80 E-value=88 Score=18.25 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=17.9
Q ss_pred hHHHHHHHhhhhhccCCCCcccccccCCccc
Q 034489 4 GLILGIGRAFRRKRTSSLDILSSKRAPRDYY 34 (93)
Q Consensus 4 g~~~~~~rg~~r~~a~~~~~ltsK~gnk~~y 34 (93)
.++..+++-+++. ++ +.|++|..++|
T Consensus 33 ~~v~kIl~~L~~a---gl--V~s~rG~~GGy 58 (127)
T d1xd7a_ 33 VVVRRMISLLKKA---DI--LTSRAGVPGAS 58 (127)
T ss_dssp HHHHHHHHHHHHT---TS--EECCSSSSSCE
T ss_pred HHHHHHHHHHHHh---Cc--ccccCCCCCcc
Confidence 3566677776554 34 89999987765
No 3
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp (Cyprinus carpio) [TaxId: 7962]}
Probab=8.43 E-value=46 Score=15.97 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=11.1
Q ss_pred eCCCCCCcccccc
Q 034489 62 VVPDLTDFKLKSY 74 (93)
Q Consensus 62 VVPdL~~f~LKPy 74 (93)
|.||=+.+.|-||
T Consensus 7 icpdgttc~lspy 19 (28)
T d1i8ya_ 7 ICPDGTTCSLSPY 19 (28)
T ss_dssp CCCTTCEEEECTT
T ss_pred EcCCCCeEeccCc
Confidence 6788888899998
No 4
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}
Probab=7.45 E-value=28 Score=22.84 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=10.7
Q ss_pred CCccccCccC---CCCceE
Q 034489 30 PRDYYKGKNC---KSTGFH 45 (93)
Q Consensus 30 nk~~yKG~g~---~~~G~~ 45 (93)
|++||||... |+.|+.
T Consensus 2 ~~~~~~~KkILVTG~tGfI 20 (356)
T d1rkxa_ 2 NNSFWQGKRVFVTGHTGFK 20 (356)
T ss_dssp CHHHHTTCEEEEETTTSHH
T ss_pred ChhhhCCCEEEEECCCCHH
Confidence 7889999764 444443
No 5
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=7.23 E-value=79 Score=17.20 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=6.3
Q ss_pred CccccCccC
Q 034489 31 RDYYKGKNC 39 (93)
Q Consensus 31 k~~yKG~g~ 39 (93)
=+||||.-.
T Consensus 48 CG~YkGr~V 56 (59)
T d2j0151 48 CGYYAGRKV 56 (59)
T ss_dssp TCCSSSCCS
T ss_pred CCeECCEEe
Confidence 368888754
No 6
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=6.13 E-value=74 Score=17.14 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=6.2
Q ss_pred CccccCccC
Q 034489 31 RDYYKGKNC 39 (93)
Q Consensus 31 k~~yKG~g~ 39 (93)
-+||||.-+
T Consensus 45 cG~Ykgr~V 53 (56)
T d2qam01 45 DGYYRGRKV 53 (56)
T ss_dssp TSCCSSSCC
T ss_pred CCCCCCEEe
Confidence 468988643
No 7
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.04 E-value=95 Score=16.80 Aligned_cols=8 Identities=38% Similarity=1.090 Sum_probs=5.9
Q ss_pred ccccCccC
Q 034489 32 DYYKGKNC 39 (93)
Q Consensus 32 ~~yKG~g~ 39 (93)
+||||.-+
T Consensus 49 G~YkGr~V 56 (58)
T d2zjrz1 49 GYYDGRQV 56 (58)
T ss_dssp CBSSSBCS
T ss_pred CcCCCEEe
Confidence 68988754
No 8
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=6.00 E-value=1.5e+02 Score=17.32 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=13.7
Q ss_pred hHHHHHHHhhhhhccCCCCcccccccCCccc
Q 034489 4 GLILGIGRAFRRKRTSSLDILSSKRAPRDYY 34 (93)
Q Consensus 4 g~~~~~~rg~~r~~a~~~~~ltsK~gnk~~y 34 (93)
..|..+++.+++. ++ +.|++|+-+|+
T Consensus 38 ~~l~kil~~L~~a---Gl--v~S~rG~GG~~ 63 (138)
T d1ylfa1 38 VVIRKIMSYLKQA---GF--VYVNRGPGGAG 63 (138)
T ss_dssp HHHHHHHHHHHHT---TS--EEEC---CCEE
T ss_pred HHHHHHHHHHHHC---CC--eEeecCCCCce
Confidence 3456666666554 34 89999974443
No 9
>d1hska2 d.146.1.1 (A:209-317) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=5.69 E-value=73 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=17.1
Q ss_pred ccCccCCCCceEeeeccEEEccC
Q 034489 34 YKGKNCKSTGFHTRKGGYVVVQE 56 (93)
Q Consensus 34 yKG~g~~~~G~~t~~G~f~i~~~ 56 (93)
+||.+.++.+...++..|+|+..
T Consensus 49 lkg~~~G~a~vS~kHanfivN~g 71 (109)
T d1hska2 49 LQGHRIGGVEVSTKHAGFMVNVD 71 (109)
T ss_dssp CTTCEETTEEECSSCTTCEEECS
T ss_pred ccccCcCCEEEccccceEEEECC
Confidence 46777777877777888887754
No 10
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=5.08 E-value=1e+02 Score=17.62 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=7.6
Q ss_pred cccc-cccCCccc
Q 034489 23 ILSS-KRAPRDYY 34 (93)
Q Consensus 23 ~lts-K~gnk~~y 34 (93)
|+|. |||+|+=|
T Consensus 2 p~t~IkQGpkEpf 14 (80)
T d1d1da1 2 PWADITQGPSESF 14 (80)
T ss_dssp TTTSCCCCSSSCH
T ss_pred CccccccCCCccH
Confidence 5666 77777643
Done!