Your job contains 1 sequence.
>034490
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 034490
(93 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014480 - symbol:LSM2 "AT1G03330" species:3702... 465 3.9e-44 1
UNIPROTKB|A6QQV3 - symbol:LSM2 "LSM2 protein" species:991... 348 9.8e-32 1
UNIPROTKB|Q9Y333 - symbol:LSM2 "U6 snRNA-associated Sm-li... 348 9.8e-32 1
MGI|MGI:90676 - symbol:Lsm2 "LSM2 homolog, U6 small nucle... 348 9.8e-32 1
ZFIN|ZDB-GENE-000616-10 - symbol:smx5 "smx5" species:7955... 348 9.8e-32 1
WB|WBGene00001808 - symbol:gut-2 species:6239 "Caenorhabd... 326 2.1e-29 1
DICTYBASE|DDB_G0281779 - symbol:lsm2 "putative U6 small n... 325 2.7e-29 1
ASPGD|ASPL0000065787 - symbol:AN10963 species:162425 "Eme... 318 1.5e-28 1
UNIPROTKB|G4NCP9 - symbol:MGG_00355 "U6 snRNA-associated ... 307 2.2e-27 1
SGD|S000000122 - symbol:LSM2 "Lsm (Like Sm) protein" spec... 297 2.5e-26 1
POMBASE|SPCC1620.01c - symbol:lsm2 "U6 snRNP-associated p... 286 3.6e-25 1
UNIPROTKB|I3LGB3 - symbol:LSM2 "Uncharacterized protein" ... 256 5.5e-22 1
MGI|MGI:2151045 - symbol:Lsm10 "U7 snRNP-specific Sm-like... 130 1.2e-08 1
RGD|1584914 - symbol:Lsm10 "LSM10, U7 small nuclear RNA a... 125 4.2e-08 1
DICTYBASE|DDB_G0287053 - symbol:lsm4 "putative U6 small n... 124 5.3e-08 1
MGI|MGI:1354692 - symbol:Lsm4 "LSM4 homolog, U6 small nuc... 122 8.7e-08 1
UNIPROTKB|E2R7Q3 - symbol:LSM10 "Uncharacterized protein"... 120 1.4e-07 1
UNIPROTKB|Q969L4 - symbol:LSM10 "U7 snRNA-associated Sm-l... 116 3.8e-07 1
ZFIN|ZDB-GENE-040426-1652 - symbol:lsm4 "LSM4 homolog, U6... 116 3.8e-07 1
UNIPROTKB|Q3ZBK6 - symbol:LSM4 "U6 snRNA-associated Sm-li... 115 4.8e-07 1
UNIPROTKB|Q9Y4Z0 - symbol:LSM4 "U6 snRNA-associated Sm-li... 115 4.8e-07 1
UNIPROTKB|G4MTQ6 - symbol:MGG_04741 "Small nuclear ribonu... 115 4.8e-07 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 112 1.0e-06 1
UNIPROTKB|A4IFN1 - symbol:LSM10 "Uncharacterized protein"... 111 1.3e-06 1
WB|WBGene00004916 - symbol:snr-3 species:6239 "Caenorhabd... 111 1.3e-06 1
DICTYBASE|DDB_G0291015 - symbol:DDB_G0291015 "putative sm... 110 1.6e-06 1
POMBASE|SPAC27D7.07c - symbol:smd1 "Sm snRNP core protein... 110 1.6e-06 1
ASPGD|ASPL0000048203 - symbol:smd1 species:162425 "Emeric... 109 2.1e-06 1
FB|FBgn0032240 - symbol:CG17768 species:7227 "Drosophila ... 109 2.1e-06 1
DICTYBASE|DDB_G0275719 - symbol:lsm6 "putative U6 small n... 108 2.6e-06 1
TAIR|locus:2180295 - symbol:emb1644 "AT5G27720" species:3... 106 4.3e-06 1
SGD|S000003306 - symbol:SMD1 "Core Sm protein Sm D1" spec... 75 5.8e-06 2
DICTYBASE|DDB_G0273003 - symbol:snrpD3 "putative small nu... 104 7.0e-06 1
UNIPROTKB|A4RQ29 - symbol:LSM6 "U6 snRNA-associated Sm-li... 104 7.0e-06 1
FB|FBgn0261933 - symbol:SmD1 "Small ribonucleoprotein par... 101 1.5e-05 1
CGD|CAL0000979 - symbol:orf19.7673 species:5476 "Candida ... 99 2.4e-05 1
GENEDB_PFALCIPARUM|PF11_0266 - symbol:PF11_0266 "small nu... 98 3.0e-05 1
UNIPROTKB|Q3ZC10 - symbol:SNRPD1 "Small nuclear ribonucle... 98 3.0e-05 1
UNIPROTKB|E2RIW7 - symbol:SNRPD1 "Uncharacterized protein... 98 3.0e-05 1
UNIPROTKB|P62314 - symbol:SNRPD1 "Small nuclear ribonucle... 98 3.0e-05 1
UNIPROTKB|F2Z5G9 - symbol:SNRPD1 "Uncharacterized protein... 98 3.0e-05 1
MGI|MGI:98344 - symbol:Snrpd1 "small nuclear ribonucleopr... 98 3.0e-05 1
RGD|1306345 - symbol:Snrpd1 "small nuclear ribonucleoprot... 98 3.0e-05 1
ZFIN|ZDB-GENE-020419-14 - symbol:snrpd1 "small nuclear ri... 98 3.0e-05 1
ASPGD|ASPL0000032943 - symbol:AN10719 species:162425 "Eme... 97 3.9e-05 1
UNIPROTKB|F1NLM5 - symbol:SNRPD1 "Uncharacterized protein... 97 3.9e-05 1
UNIPROTKB|P62312 - symbol:LSM6 "U6 snRNA-associated Sm-li... 95 6.3e-05 1
MGI|MGI:1925901 - symbol:Lsm6 "LSM6 homolog, U6 small nuc... 95 6.3e-05 1
TAIR|locus:2091102 - symbol:AT3G07590 "AT3G07590" species... 93 0.00010 1
TAIR|locus:2080487 - symbol:LSM6A "AT3G59810" species:370... 92 0.00013 1
WB|WBGene00003080 - symbol:lsm-6 species:6239 "Caenorhabd... 92 0.00013 1
WB|WBGene00003078 - symbol:lsm-4 species:6239 "Caenorhabd... 92 0.00013 1
DICTYBASE|DDB_G0278027 - symbol:snrpD1 "putative small nu... 90 0.00021 1
UNIPROTKB|E1BY33 - symbol:LSM10 "Uncharacterized protein"... 90 0.00021 1
ZFIN|ZDB-GENE-040625-50 - symbol:lsm6 "LSM6 homolog, U6 s... 90 0.00021 1
FB|FBgn0034564 - symbol:CG9344 species:7227 "Drosophila m... 87 0.00045 1
SGD|S000002786 - symbol:LSM6 "Lsm (Like Sm) protein" spec... 87 0.00045 1
POMBASE|SPAC2F3.17c - symbol:lsm6 "U6 snRNP-associated pr... 86 0.00057 1
WB|WBGene00004914 - symbol:snr-1 species:6239 "Caenorhabd... 86 0.00057 1
>TAIR|locus:2014480 [details] [associations]
symbol:LSM2 "AT1G03330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0005829 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
OMA:KLDNISC PANTHER:PTHR13829 EMBL:BT025569 IPI:IPI00543239
RefSeq:NP_563682.1 UniGene:At.42549 ProteinModelPortal:Q1H595
SMR:Q1H595 STRING:Q1H595 PaxDb:Q1H595 PRIDE:Q1H595
EnsemblPlants:AT1G03330.1 GeneID:839526 KEGG:ath:AT1G03330
TAIR:At1g03330 InParanoid:Q1H595 PhylomeDB:Q1H595
ProtClustDB:CLSN2687640 Genevestigator:Q1H595 Uniprot:Q1H595
Length = 93
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 90/93 (96%), Positives = 91/93 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLP DGVDVDLLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93
>UNIPROTKB|A6QQV3 [details] [associations]
symbol:LSM2 "LSM2 protein" species:9913 "Bos taurus"
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12621 OMA:KLDNISC
PANTHER:PTHR13829 CTD:57819 HOGENOM:HOG000166937 HOVERGEN:HBG000486
OrthoDB:EOG4Z36G9 GeneTree:ENSGT00390000016597 EMBL:DAAA02055373
EMBL:BC150005 IPI:IPI00702946 RefSeq:NP_001094647.1
UniGene:Bt.43826 SMR:A6QQV3 STRING:A6QQV3
Ensembl:ENSBTAT00000007405 GeneID:538662 KEGG:bta:538662
InParanoid:A6QQV3 NextBio:20877502 Uniprot:A6QQV3
Length = 95
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>UNIPROTKB|Q9Y333 [details] [associations]
symbol:LSM2 "U6 snRNA-associated Sm-like protein LSm2"
species:9606 "Homo sapiens" [GO:0019901 "protein kinase binding"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;NAS;TAS] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR016654 PIRSF:PIRSF016394
EMBL:AF182288 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654
EMBL:BA000025 EMBL:CH471081 Reactome:REACT_1675 EMBL:CR759787
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AF134726 GO:GO:0017070 GO:GO:0043928 Pfam:PF01423
EMBL:AL929592 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 EMBL:AJ245416 EMBL:AF196468
EMBL:AF136977 EMBL:CR542146 EMBL:CR542157 EMBL:CR759915
EMBL:CR925765 EMBL:BC009192 IPI:IPI00032460 RefSeq:NP_067000.1
UniGene:Hs.103106 ProteinModelPortal:Q9Y333 SMR:Q9Y333
DIP:DIP-31139N IntAct:Q9Y333 MINT:MINT-1032572 STRING:Q9Y333
PhosphoSite:Q9Y333 DMDM:10720079 PaxDb:Q9Y333 PeptideAtlas:Q9Y333
PRIDE:Q9Y333 DNASU:57819 Ensembl:ENST00000375661
Ensembl:ENST00000383391 Ensembl:ENST00000424975
Ensembl:ENST00000432122 Ensembl:ENST00000434125
Ensembl:ENST00000455705 GeneID:57819 KEGG:hsa:57819 UCSC:uc003nxg.3
CTD:57819 GeneCards:GC06M031765 HGNC:HGNC:13940 MIM:607282
neXtProt:NX_Q9Y333 PharmGKB:PA25929 HOGENOM:HOG000166937
HOVERGEN:HBG000486 InParanoid:Q9Y333 OrthoDB:EOG4Z36G9
PhylomeDB:Q9Y333 GenomeRNAi:57819 NextBio:64772 ArrayExpress:Q9Y333
Bgee:Q9Y333 CleanEx:HS_LSM2 Genevestigator:Q9Y333
GermOnline:ENSG00000204392 Uniprot:Q9Y333
Length = 95
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>MGI|MGI:90676 [details] [associations]
symbol:Lsm2 "LSM2 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006402 "mRNA
catabolic process" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR016654
PIRSF:PIRSF016394 EMBL:U85207 MGI:MGI:90676 INTERPRO:IPR001163
GO:GO:0019901 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K12621
PANTHER:PTHR13829 CTD:57819 HOVERGEN:HBG000486 OrthoDB:EOG4Z36G9
EMBL:AF397035 EMBL:AF397036 EMBL:BC014288 IPI:IPI00876050
RefSeq:NP_001103571.1 UniGene:Mm.165735 ProteinModelPortal:O35900
SMR:O35900 STRING:O35900 PhosphoSite:O35900
REPRODUCTION-2DPAGE:O35900 PaxDb:O35900 PRIDE:O35900
Ensembl:ENSMUST00000114011 GeneID:27756 KEGG:mmu:27756
InParanoid:O35900 NextBio:306064 Bgee:O35900 Genevestigator:O35900
GermOnline:ENSMUSG00000007050 Uniprot:O35900
Length = 95
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>ZFIN|ZDB-GENE-000616-10 [details] [associations]
symbol:smx5 "smx5" species:7955 "Danio rerio"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 ZFIN:ZDB-GENE-000616-10
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12621 OMA:KLDNISC
PANTHER:PTHR13829 HOGENOM:HOG000166937 HOVERGEN:HBG000486
OrthoDB:EOG4Z36G9 GeneTree:ENSGT00390000016597 EMBL:FP101882
EMBL:BC085441 EMBL:BC152150 IPI:IPI00490217 RefSeq:NP_571571.1
UniGene:Dr.75582 STRING:Q5RKP8 Ensembl:ENSDART00000104394
GeneID:57924 KEGG:dre:57924 CTD:57924 InParanoid:Q5RKP8
NextBio:20891940 Uniprot:Q5RKP8
Length = 95
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>WB|WBGene00001808 [details] [associations]
symbol:gut-2 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008406
"gonad development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0016477 GO:GO:0008406 GO:GO:0042127
GO:GO:0007281 GO:GO:0040027 GO:GO:0040020 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12621 OMA:KLDNISC PANTHER:PTHR13829
HOGENOM:HOG000166937 GeneTree:ENSGT00390000016597 EMBL:Z81118
GeneID:179833 KEGG:cel:CELE_T10G3.6 CTD:179833 PIR:D89269
PIR:T24808 RefSeq:NP_001256511.1 ProteinModelPortal:P92022
SMR:P92022 STRING:P92022 PaxDb:P92022 EnsemblMetazoa:T10G3.6a
WormBase:T10G3.6a InParanoid:P92022 NextBio:907050
ArrayExpress:P92022 Uniprot:P92022
Length = 97
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D +++PHM+SV+NC
Sbjct: 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQLP D VD LL D+ R+E
Sbjct: 61 FIRGSVVRYVQLPSDQVDTQLLADSCRKE 89
>DICTYBASE|DDB_G0281779 [details] [associations]
symbol:lsm2 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 dictyBase:DDB_G0281779 INTERPRO:IPR001163
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000042 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
RefSeq:XP_640635.1 ProteinModelPortal:Q54TF6 STRING:Q54TF6
EnsemblProtists:DDB0233376 GeneID:8623246 KEGG:ddi:DDB_G0281779
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 Uniprot:Q54TF6
Length = 117
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 61/91 (67%), Positives = 78/91 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP + VDV+ L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
>ASPGD|ASPL0000065787 [details] [associations]
symbol:AN10963 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] InterPro:IPR016654 PIRSF:PIRSF016394
INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003676 EMBL:BN001304
GO:GO:0000932 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:KLDNISC PANTHER:PTHR13829
HOGENOM:HOG000166937 EnsemblFungi:CADANIAT00000699 Uniprot:C8VBS9
Length = 98
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 64/90 (71%), Positives = 73/90 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQVVTIELKNDIRIRGTLKSVDQYLNIKLDDIDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYVVLPRSEVDVGLLEDATRREA 90
>UNIPROTKB|G4NCP9 [details] [associations]
symbol:MGG_00355 "U6 snRNA-associated Sm-like protein LSm2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR016654
PIRSF:PIRSF016394 INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001235
GO:GO:0000932 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12621 PANTHER:PTHR13829
RefSeq:XP_003718727.1 ProteinModelPortal:G4NCP9
EnsemblFungi:MGG_00355T0 GeneID:2674959 KEGG:mgr:MGG_00355
Uniprot:G4NCP9
Length = 97
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ E+TVELKN + IRGTL SVDQYLN+KL++ VV+ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDVEITVELKNSIQIRGTLKSVDQYLNLKLDDISVVEDIKYPHLSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYIHLPASHVDVPLLEDATRREA 90
>SGD|S000000122 [details] [associations]
symbol:LSM2 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=TAS] [GO:0003723 "RNA binding"
evidence=IEA;IDA;IPI] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR016654
PIRSF:PIRSF016394 SGD:S000000122 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006936 GO:GO:0003723 GO:GO:0008033 EMBL:X77291 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 HOGENOM:HOG000166937
OrthoDB:EOG469V4G EMBL:Z35787 PIR:S45760 RefSeq:NP_009527.1
ProteinModelPortal:P38203 SMR:P38203 DIP:DIP-794N IntAct:P38203
MINT:MINT-383549 STRING:P38203 PaxDb:P38203 PeptideAtlas:P38203
EnsemblFungi:YBL026W GeneID:852255 KEGG:sce:YBL026W CYGD:YBL026w
GeneTree:ENSGT00390000016597 NextBio:970835 Genevestigator:P38203
GermOnline:YBL026W Uniprot:P38203
Length = 95
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 59/89 (66%), Positives = 70/89 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGS VRYV L + VD +LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
>POMBASE|SPCC1620.01c [details] [associations]
symbol:lsm2 "U6 snRNP-associated protein core protein
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] InterPro:IPR016654 PIRSF:PIRSF016394
PomBase:SPCC1620.01c INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681 GO:GO:0003723
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
GO:GO:0046540 GO:GO:0045292 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12621 OMA:KLDNISC PANTHER:PTHR13829 HOGENOM:HOG000166937
PIR:T41031 RefSeq:NP_588459.1 ProteinModelPortal:O94408
STRING:O94408 EnsemblFungi:SPCC1620.01c.1 GeneID:2538804
KEGG:spo:SPCC1620.01c OrthoDB:EOG469V4G NextBio:20799986
Uniprot:O94408
Length = 96
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 57/89 (64%), Positives = 69/89 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+ EVTVELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV + VD LL DA RR+
Sbjct: 61 FIRGSVVRYVHMSSAYVDTILLADACRRD 89
>UNIPROTKB|I3LGB3 [details] [associations]
symbol:LSM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR016654
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 PANTHER:PTHR13829 GeneTree:ENSGT00390000016597
Ensembl:ENSSSCT00000025527 Uniprot:I3LGB3
Length = 72
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 50/67 (74%), Positives = 55/67 (82%)
Query: 24 AIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLH 83
+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD LL
Sbjct: 1 SICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQ 60
Query: 84 DATRREA 90
DA R+EA
Sbjct: 61 DAARKEA 67
>MGI|MGI:2151045 [details] [associations]
symbol:Lsm10 "U7 snRNP-specific Sm-like protein LSM10"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0015030 "Cajal body"
evidence=ISO] [GO:0017069 "snRNA binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071208 "histone
pre-mRNA DCP binding" evidence=IDA] MGI:MGI:2151045
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0015030
GO:GO:0000084 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017069
Pfam:PF01423 CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640
HOVERGEN:HBG052366 OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683
GO:GO:0071208 EMBL:BC024543 EMBL:BC026476 IPI:IPI00154076
RefSeq:NP_001156738.1 RefSeq:NP_620046.1 UniGene:Mm.41865
ProteinModelPortal:Q8QZX5 SMR:Q8QZX5 STRING:Q8QZX5
PhosphoSite:Q8QZX5 PRIDE:Q8QZX5 Ensembl:ENSMUST00000055575
Ensembl:ENSMUST00000179323 GeneID:116748 KEGG:mmu:116748
GeneTree:ENSGT00510000048364 InParanoid:Q8QZX5 NextBio:369080
Bgee:Q8QZX5 CleanEx:MM_LSM10 Genevestigator:Q8QZX5
GermOnline:ENSMUSG00000050188 InterPro:IPR006649 SMART:SM00651
Uniprot:Q8QZX5
Length = 122
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G VRY
Sbjct: 24 LQGQITTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRNVRY 81
Query: 70 VQLPPDGVDV 79
V +P DGVD+
Sbjct: 82 VHIP-DGVDI 90
>RGD|1584914 [details] [associations]
symbol:Lsm10 "LSM10, U7 small nuclear RNA associated"
species:10116 "Rattus norvegicus" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA;ISO] [GO:0005683 "U7 snRNP"
evidence=IEA;ISO] [GO:0015030 "Cajal body" evidence=IEA;ISO]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA;ISO]
RGD:1584914 INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473968 Pfam:PF01423
CTD:84967 eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:BC166902 IPI:IPI00369107 RefSeq:NP_001102446.1 UniGene:Rn.3612
STRING:B2RYU1 Ensembl:ENSRNOT00000035637 GeneID:366468
KEGG:rno:366468 UCSC:RGD:1584914 NextBio:689468
Genevestigator:B2RYU1 Uniprot:B2RYU1
Length = 122
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G VRY
Sbjct: 24 LQGQITTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRNVRY 81
Query: 70 VQLPPDGVDV 79
V +P DGV++
Sbjct: 82 VHIP-DGVNI 90
>DICTYBASE|DDB_G0287053 [details] [associations]
symbol:lsm4 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0287053
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000153_GR
GO:GO:0003723 GO:GO:0006402 GO:GO:0000398 EMBL:AAFI02000096
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
RefSeq:XP_637396.1 HSSP:P62314 ProteinModelPortal:Q54KX4
STRING:Q54KX4 EnsemblProtists:DDB0233378 GeneID:8625927
KEGG:ddi:DDB_G0287053 OMA:NRNTFGG Uniprot:Q54KX4
Length = 177
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVV-DQDKYPHMLSVR 58
ML S + G ++ VELKN G L + D ++NI L+N R D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKF---WKIQ 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRR 88
+C+IRG+ ++Y+ +P + +D+ + T R
Sbjct: 58 SCYIRGNTIKYISVPDEIIDLVAEEEQTLR 87
>MGI|MGI:1354692 [details] [associations]
symbol:Lsm4 "LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1354692
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:AJ249439 IPI:IPI00134784 RefSeq:NP_056631.2 UniGene:Mm.248188
ProteinModelPortal:Q9QXA5 SMR:Q9QXA5 STRING:Q9QXA5
PhosphoSite:Q9QXA5 PaxDb:Q9QXA5 PRIDE:Q9QXA5 GeneID:50783
KEGG:mmu:50783 InParanoid:Q9QXA5 NextBio:307741 Bgee:Q9QXA5
Genevestigator:Q9QXA5 GermOnline:ENSMUSG00000031848 Uniprot:Q9QXA5
Length = 137
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + +A + RGG
Sbjct: 58 ECYIRGSTIKYLRIPDEIIDM-VREEAAKGRGRGG 91
>UNIPROTKB|E2R7Q3 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA] [GO:0005683
"U7 snRNP" evidence=IEA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
OMA:WGHQVEL GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 InterPro:IPR006649 SMART:SM00651
EMBL:AAEX03009635 RefSeq:XP_532561.1 ProteinModelPortal:E2R7Q3
Ensembl:ENSCAFT00000005422 GeneID:475335 KEGG:cfa:475335
NextBio:20851186 Uniprot:E2R7Q3
Length = 123
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G VRY
Sbjct: 24 LQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRNVRY 81
Query: 70 VQLPPD 75
V +P D
Sbjct: 82 VHIPDD 87
>UNIPROTKB|Q969L4 [details] [associations]
symbol:LSM10 "U7 snRNA-associated Sm-like protein LSm10"
species:9606 "Homo sapiens" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 EMBL:AF394685 INTERPRO:IPR001163 GO:GO:0008380
Reactome:REACT_1675 GO:GO:0006397 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 Pfam:PF01423 GO:GO:0008334
EMBL:BC007623 IPI:IPI00056416 RefSeq:NP_116270.1 UniGene:Hs.603131
ProteinModelPortal:Q969L4 SMR:Q969L4 IntAct:Q969L4
MINT:MINT-1485790 STRING:Q969L4 PhosphoSite:Q969L4 DMDM:20177959
PRIDE:Q969L4 Ensembl:ENST00000315732 GeneID:84967 KEGG:hsa:84967
UCSC:uc001cao.1 CTD:84967 GeneCards:GC01M036856 HGNC:HGNC:17562
HPA:HPA048469 neXtProt:NX_Q969L4 PharmGKB:PA134977215
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
InParanoid:Q969L4 OMA:WGHQVEL OrthoDB:EOG4HQDKT PhylomeDB:Q969L4
ChiTaRS:LSM10 GenomeRNAi:84967 NextBio:75496 Bgee:Q969L4
CleanEx:HS_LSM10 Genevestigator:Q969L4 GermOnline:ENSG00000181817
GO:GO:0005683 GO:GO:0071208 Uniprot:Q969L4
Length = 123
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G VRY
Sbjct: 24 LQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFVTGRNVRY 81
Query: 70 VQLPPD 75
V +P D
Sbjct: 82 VHIPDD 87
>ZFIN|ZDB-GENE-040426-1652 [details] [associations]
symbol:lsm4 "LSM4 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1652 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:BX936438 EMBL:BC059435 EMBL:BC062285 IPI:IPI00505813
RefSeq:NP_956990.1 UniGene:Dr.159006 STRING:Q6P6E4
Ensembl:ENSDART00000037824 GeneID:393669 KEGG:dre:393669
InParanoid:Q6P6E4 NextBio:20814675 Uniprot:Q6P6E4
Length = 143
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/95 (32%), Positives = 46/95 (48%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 58 ECYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGG 92
>UNIPROTKB|Q3ZBK6 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 EMBL:BC103243 IPI:IPI00718624
RefSeq:NP_001030513.1 UniGene:Bt.49560 ProteinModelPortal:Q3ZBK6
SMR:Q3ZBK6 STRING:Q3ZBK6 PRIDE:Q3ZBK6 Ensembl:ENSBTAT00000011312
GeneID:613634 KEGG:bta:613634 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 InParanoid:Q3ZBK6
OMA:GMQQQKQ OrthoDB:EOG4T784T NextBio:20898680 InterPro:IPR027141
PANTHER:PTHR23338 Uniprot:Q3ZBK6
Length = 139
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/95 (32%), Positives = 45/95 (47%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + RGG
Sbjct: 58 ECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGG 92
>UNIPROTKB|Q9Y4Z0 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005688 "U6
snRNP" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0043928 GO:GO:0005688 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486
CTD:25804 HOGENOM:HOG000182713 OMA:GMQQQKQ OrthoDB:EOG4T784T
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:AJ238096 EMBL:AF182290
EMBL:AF117235 EMBL:AF251218 EMBL:BC000387 EMBL:BC003652
EMBL:BC022198 EMBL:BC023665 IPI:IPI00294955 RefSeq:NP_036453.1
UniGene:Hs.515255 ProteinModelPortal:Q9Y4Z0 SMR:Q9Y4Z0
DIP:DIP-31209N IntAct:Q9Y4Z0 MINT:MINT-1469332 STRING:Q9Y4Z0
PhosphoSite:Q9Y4Z0 DMDM:10720082 PaxDb:Q9Y4Z0 PeptideAtlas:Q9Y4Z0
PRIDE:Q9Y4Z0 DNASU:25804 Ensembl:ENST00000252816 GeneID:25804
KEGG:hsa:25804 UCSC:uc002niq.3 GeneCards:GC19M018417
HGNC:HGNC:17259 HPA:HPA040932 MIM:607284 neXtProt:NX_Q9Y4Z0
PharmGKB:PA134906569 InParanoid:Q9Y4Z0 PhylomeDB:Q9Y4Z0
ChiTaRS:LSM4 GenomeRNAi:25804 NextBio:47015 Bgee:Q9Y4Z0
CleanEx:HS_LSM4 Genevestigator:Q9Y4Z0 GermOnline:ENSG00000130520
Uniprot:Q9Y4Z0
Length = 139
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/95 (32%), Positives = 45/95 (47%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + RGG
Sbjct: 58 ECYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGG 92
>UNIPROTKB|G4MTQ6 [details] [associations]
symbol:MGG_04741 "Small nuclear ribonucleoprotein Sm D1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003676
GO:GO:0030529 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 KO:K11087 RefSeq:XP_003713702.1
ProteinModelPortal:G4MTQ6 SMR:G4MTQ6 EnsemblFungi:MGG_04741T0
GeneID:2678064 KEGG:mgr:MGG_04741 Uniprot:G4MTQ6
Length = 125
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ SV +N L N ++ + + P L N IRGS +RY LP
Sbjct: 15 VTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMN--IRGSTIRYYILP- 71
Query: 75 DGVDVD-LLHDAT 86
D + +D LL D T
Sbjct: 72 DSLPLDTLLVDDT 84
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKL-ENTRVV-DQDKYPHMLSVRNCFIRGSVVRY 69
GR + VELKN G L + D Y+N+ L E R + D DK+ + C+IRG+ ++Y
Sbjct: 12 GRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKF---FRLPECYIRGNNIKY 68
Query: 70 VQLPPDGVDVDLLHDATRREARG 92
+++ + + A +RE RG
Sbjct: 69 LRIQDEVLSQVAKQQAQQRENRG 91
>UNIPROTKB|A4IFN1 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 CTD:84967
eggNOG:NOG146625 HOGENOM:HOG000230640 HOVERGEN:HBG052366
OMA:WGHQVEL OrthoDB:EOG4HQDKT GO:GO:0005683 GO:GO:0071208
GeneTree:ENSGT00510000048364 EMBL:DAAA02009202 EMBL:BC134669
IPI:IPI00709521 RefSeq:NP_001077250.1 UniGene:Bt.13478
STRING:A4IFN1 Ensembl:ENSBTAT00000033237 GeneID:618089
KEGG:bta:618089 InParanoid:A4IFN1 NextBio:20900995 Uniprot:A4IFN1
Length = 122
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L G+ TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G VRY
Sbjct: 24 LQGQVTTVDLRDESVAHGRIDNVDAFMNIRL--AQVTYTDRWGHQVELDDLFVTGRNVRY 81
Query: 70 VQLPPDGVDV 79
V +P D V++
Sbjct: 82 VHIP-DNVNI 90
>WB|WBGene00004916 [details] [associations]
symbol:snr-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0007281
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
EMBL:FO081595 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000182713 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00510000047245 KO:K11087
OMA:KMTIKNR PIR:T16952 RefSeq:NP_495306.1 ProteinModelPortal:Q10013
SMR:Q10013 IntAct:Q10013 STRING:Q10013 PaxDb:Q10013
EnsemblMetazoa:T28D9.10.1 EnsemblMetazoa:T28D9.10.2 GeneID:174072
KEGG:cel:CELE_T28D9.10 UCSC:T28D9.10.1 CTD:174072 WormBase:T28D9.10
InParanoid:Q10013 NextBio:882385 Uniprot:Q10013
Length = 126
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L + ++K P L +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLS- 59
Query: 61 FIRGSVVRYVQLP-PDGVDVDLLHDATRREAR 91
IRG+ +RY+ LP P +D L+ D R++AR
Sbjct: 60 -IRGNNIRYIILPDPLALDTLLIDDEPRKKAR 90
>DICTYBASE|DDB_G0291015 [details] [associations]
symbol:DDB_G0291015 "putative small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0291015 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AAFI02000174 Pfam:PF01423 eggNOG:NOG146625
InterPro:IPR027141 PANTHER:PTHR23338 HSSP:P62314 RefSeq:XP_635453.1
ProteinModelPortal:Q54F84 EnsemblProtists:DDB0233401 GeneID:8627953
KEGG:ddi:DDB_G0291015 InParanoid:Q54F84 OMA:ITIQLRS Uniprot:Q54F84
Length = 137
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 24/78 (30%), Positives = 49/78 (62%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS--VRNCFIRG 64
F L G ++T++L+++ I GT+ +VD YLNI+L + ++ + +Y + V+ I+
Sbjct: 35 FTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNT-RYKNKRDEHVQEILIQS 93
Query: 65 SVVRYVQLPPDGVDVDLL 82
+R++Q+P D +D++ L
Sbjct: 94 RNIRFIQIP-DKIDLNSL 110
>POMBASE|SPAC27D7.07c [details] [associations]
symbol:smd1 "Sm snRNP core protein Smd1" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=ISS] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IC] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] PomBase:SPAC27D7.07c INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003729
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000243 GO:GO:0046540
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338
GO:GO:0005685 GO:GO:0000395 KO:K11087 OMA:KMTIKNR PIR:T38440
RefSeq:NP_594613.1 ProteinModelPortal:O42661 SMR:O42661
IntAct:O42661 STRING:O42661 EnsemblFungi:SPAC27D7.07c.1
GeneID:2542690 KEGG:spo:SPAC27D7.07c OrthoDB:EOG4F7RVR
NextBio:20803738 Uniprot:O42661
Length = 117
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ SVD +N L+ ++ + + P + V
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREP--VPVETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATR 87
IRG+ +RY LP D + +D L+ D+T+
Sbjct: 59 SIRGNNIRYYILP-DSLPLDTLLIDDSTK 86
>ASPGD|ASPL0000048203 [details] [associations]
symbol:smd1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
EMBL:BN001307 GO:GO:0003676 EMBL:AACD01000032 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 KO:K11087 OMA:KMTIKNR
OrthoDB:EOG4F7RVR RefSeq:XP_659709.1 ProteinModelPortal:Q5BBH5
SMR:Q5BBH5 STRING:Q5BBH5 EnsemblFungi:CADANIAT00008778
GeneID:2875679 KEGG:ani:AN2105.2 Uniprot:Q5BBH5
Length = 121
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ SV +N L ++ + + P L N IRGS +RY LP
Sbjct: 15 VTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTIN--IRGSTIRYYILP- 71
Query: 75 DGVDVD-LLHDAT 86
D + +D LL D T
Sbjct: 72 DSLPLDTLLIDDT 84
>FB|FBgn0032240 [details] [associations]
symbol:CG17768 species:7227 "Drosophila melanogaster"
[GO:0017070 "U6 snRNA binding" evidence=ISS] INTERPRO:IPR001163
EMBL:AE014134 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00610000086173 InterPro:IPR027141 PANTHER:PTHR23338
UniGene:Dm.13910 EMBL:BT044323 RefSeq:NP_001027236.1
RefSeq:NP_001188778.1 SMR:Q9VKW8 IntAct:Q9VKW8 MINT:MINT-774206
STRING:Q9VKW8 EnsemblMetazoa:FBtr0100253 EnsemblMetazoa:FBtr0304111
GeneID:3772012 KEGG:dme:Dmel_CG17768 UCSC:CG17768-RA
FlyBase:FBgn0032240 InParanoid:Q9VKW8 OMA:NQRAPRS NextBio:852113
Uniprot:Q9VKW8
Length = 154
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K + VELKN G L S D ++NI L + +D + C
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVDV 79
+IRGS ++Y+++P + +D+
Sbjct: 60 YIRGSTIKYLRIPDEVIDM 78
>DICTYBASE|DDB_G0275719 [details] [associations]
symbol:lsm6 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0275719
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000013
GO:GO:0008033 GO:GO:0006402 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 RefSeq:XP_643590.1 HSSP:P54999
ProteinModelPortal:Q552U1 STRING:Q552U1 EnsemblProtists:DDB0233198
GeneID:8620177 KEGG:ddi:DDB_G0275719 KO:K12625 OMA:EQTEEYL
Uniprot:Q552U1
Length = 88
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPH-MLSVR--NC 60
F++FK +GR V V+L N + RG L VD +NI +E T ++Y + L + +C
Sbjct: 18 FNFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQT-----EEYLNGQLKTKYGDC 72
Query: 61 FIRGSVVRYVQLPP 74
F+RG+ V Y+ P
Sbjct: 73 FLRGNNVLYISAQP 86
>TAIR|locus:2180295 [details] [associations]
symbol:emb1644 "AT5G27720" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS]
INTERPRO:IPR001163 EMBL:CP002688 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 OMA:NRNTFGG IPI:IPI00529680
RefSeq:NP_198124.1 UniGene:At.43840 ProteinModelPortal:F4K4E3
SMR:F4K4E3 PRIDE:F4K4E3 EnsemblPlants:AT5G27720.1 GeneID:832834
KEGG:ath:AT5G27720 Uniprot:F4K4E3
Length = 129
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
+IRG+ ++Y+++P + +D + + TR + +
Sbjct: 60 YIRGNTIKYLRVPDEVID-KVQEEKTRTDRK 89
>SGD|S000003306 [details] [associations]
symbol:SMD1 "Core Sm protein Sm D1" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0005682 "U5
snRNP" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
SGD:S000003306 INTERPRO:IPR001163 EMBL:BK006941 GO:GO:0003729
GO:GO:0005682 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0000243 GO:GO:0046540 GO:GO:0071004 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338
GO:GO:0005685 EMBL:L04669 EMBL:Z72858 GeneTree:ENSGT00510000047245
KO:K11087 OrthoDB:EOG4F7RVR EMBL:AY692847 PIR:A47264
RefSeq:NP_011588.3 RefSeq:NP_011594.3 ProteinModelPortal:Q02260
SMR:Q02260 DIP:DIP-227N IntAct:Q02260 MINT:MINT-505581
STRING:Q02260 PaxDb:Q02260 EnsemblFungi:YGR074W GeneID:852964
GeneID:852971 KEGG:sce:YGR074W KEGG:sce:YGR080W CYGD:YGR074w
OMA:RGNTIRQ NextBio:972741 Genevestigator:Q02260 GermOnline:YGR074W
Uniprot:Q02260
Length = 146
Score = 75 (31.5 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV 45
M ++ K L +VT+ELKN + GTL SV +N L + ++
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKL 45
Score = 43 (20.2 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 53 HMLSVRNCFIRGSVVRYVQLPPDGVDVDLL 82
++ S++ IRG+ +R + LP D +++D L
Sbjct: 78 NIASLQYINIRGNTIRQIILP-DSLNLDSL 106
>DICTYBASE|DDB_G0273003 [details] [associations]
symbol:snrpD3 "putative small nuclear
ribonucleoprotein D3" species:44689 "Dictyostelium discoideum"
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0273003
INTERPRO:IPR001163 GenomeReviews:CM000151_GR EMBL:AAFI02000008
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
KO:K11088 RefSeq:XP_001134627.1 ProteinModelPortal:Q86L45
SMR:Q86L45 STRING:Q86L45 EnsemblProtists:DDB0233194 GeneID:8618627
KEGG:ddi:DDB_G0273003 InParanoid:Q86L45 OMA:HEADGHI
ProtClustDB:CLSZ2847462 Uniprot:Q86L45
Length = 146
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G VTVELKN RGTL + +N +++N V +D + C++RGS VR++
Sbjct: 15 GHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEY--CYVRGSKVRFII 72
Query: 72 LP 73
LP
Sbjct: 73 LP 74
>UNIPROTKB|A4RQ29 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003723
GO:GO:0008033 GO:GO:0000932 EMBL:CM001231 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12625 RefSeq:XP_003710600.1
ProteinModelPortal:A4RQ29 STRING:A4RQ29 EnsemblFungi:MGG_05701T0
GeneID:2676106 KEGG:mgr:MGG_05701 OrthoDB:EOG4CC7B6 Uniprot:A4RQ29
Length = 83
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G VTV+L + + +G L SVD Y+NI LE V Q K S + F+
Sbjct: 16 SFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKR----SYGDAFV 71
Query: 63 RGSVVRYVQLPP 74
RG+ V Y+ P
Sbjct: 72 RGNNVMYIAASP 83
>FB|FBgn0261933 [details] [associations]
symbol:SmD1 "Small ribonucleoprotein particle protein SmD1"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] INTERPRO:IPR001163
EMBL:AE014296 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00510000047245 KO:K11087
OMA:KMTIKNR EMBL:AY071359 EMBL:BT032651 RefSeq:NP_524774.1
UniGene:Dm.1823 ProteinModelPortal:Q9VU02 SMR:Q9VU02 DIP:DIP-18826N
IntAct:Q9VU02 MINT:MINT-897207 STRING:Q9VU02 PaxDb:Q9VU02
PRIDE:Q9VU02 EnsemblMetazoa:FBtr0075952 GeneID:44668
KEGG:dme:Dmel_CG10753 CTD:44668 FlyBase:FBgn0261933
InParanoid:Q9VU02 OrthoDB:EOG44MW8P PhylomeDB:Q9VU02
GenomeRNAi:44668 NextBio:837527 Bgee:Q9VU02 GermOnline:CG10753
Uniprot:Q9VU02
Length = 124
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L++ R+ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDAT 86
IRG+ +RY LP D + ++ LL D T
Sbjct: 60 -IRGNNIRYFILP-DSLPLETLLIDDT 84
>CGD|CAL0000979 [details] [associations]
symbol:orf19.7673 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0000243
"commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] CGD:CAL0000979 INTERPRO:IPR001163 EMBL:AACQ01000032
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 KO:K11087 RefSeq:XP_719431.1
ProteinModelPortal:Q5ACG9 STRING:Q5ACG9 GeneID:3638958
KEGG:cal:CaO19.7673 Uniprot:Q5ACG9
Length = 116
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + +TVELKN I GTL S + +N+ L+N R+ + P +L N I
Sbjct: 6 FLMNIPNSTNQPITVELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPILLQYIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RG+ VR + LP D ++++ + + + +G
Sbjct: 64 RGNQVRQILLP-DELNIESVLAKSETKIKG 92
>GENEDB_PFALCIPARUM|PF11_0266 [details] [associations]
symbol:PF11_0266 "small nuclear
ribonucleoprotein D1, putative" species:5833 "Plasmodium
falciparum" [GO:0008380 "RNA splicing" evidence=ISS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AE014186 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000182713 InterPro:IPR027141
PANTHER:PTHR23338 HSSP:P62314 KO:K11087 RefSeq:XP_001347937.1
ProteinModelPortal:Q8IIA8 SMR:Q8IIA8 PRIDE:Q8IIA8
EnsemblProtists:PF11_0266:mRNA GeneID:810813 KEGG:pfa:PF11_0266
EuPathDB:PlasmoDB:PF3D7_1125500 OMA:TITDEYT ProtClustDB:CLSZ2500897
Uniprot:Q8IIA8
Length = 126
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK----Y----P 52
M + L VT+ELKN I G + +VD +N ++N +VV ++K Y
Sbjct: 1 MKLVHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTK 60
Query: 53 HMLSVRNCFIRGSVVRYVQLPPDGVDVD--LLHDATRRE 89
LS+ + IRG+ +RY L D + +D L+ D T ++
Sbjct: 61 QFLSLEHVTIRGNNIRYFILS-DSLPLDSLLVEDTTPKK 98
>UNIPROTKB|Q3ZC10 [details] [associations]
symbol:SNRPD1 "Small nuclear ribonucleoprotein Sm D1"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:BC102987 IPI:IPI00703535
RefSeq:NP_001030237.1 UniGene:Bt.49433 ProteinModelPortal:Q3ZC10
SMR:Q3ZC10 STRING:Q3ZC10 PRIDE:Q3ZC10 Ensembl:ENSBTAT00000010912
GeneID:508788 KEGG:bta:508788 CTD:6632 GeneTree:ENSGT00510000047245
HOVERGEN:HBG061491 InParanoid:Q3ZC10 KO:K11087 OMA:KMTIKNR
OrthoDB:EOG4933KF NextBio:20868681 Uniprot:Q3ZC10
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 60 -IRGNNIRYFILP-DSLPLDTL 79
>UNIPROTKB|E2RIW7 [details] [associations]
symbol:SNRPD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 CTD:6632
GeneTree:ENSGT00510000047245 KO:K11087 OMA:KMTIKNR
EMBL:AAEX03005464 RefSeq:XP_537302.1 ProteinModelPortal:E2RIW7
SMR:E2RIW7 PRIDE:E2RIW7 Ensembl:ENSCAFT00000028987 GeneID:480178
KEGG:cfa:480178 NextBio:20855242 Uniprot:E2RIW7
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 60 -IRGNNIRYFILP-DSLPLDTL 79
>UNIPROTKB|P62314 [details] [associations]
symbol:SNRPD1 "Small nuclear ribonucleoprotein Sm D1"
species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 EMBL:CH471088 GO:GO:0000387
GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0000245 GO:GO:0005689 PDB:3S6N PDBsum:3S6N
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338 PDB:2Y9A
PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
CTD:6632 HOVERGEN:HBG061491 KO:K11087 OMA:KMTIKNR OrthoDB:EOG4933KF
EMBL:J03798 EMBL:L36188 EMBL:L36182 EMBL:L36186 EMBL:L36187
EMBL:CR542239 EMBL:AB451227 EMBL:AB451350 EMBL:BC001721
EMBL:BC072427 IPI:IPI00302850 PIR:A94201 RefSeq:NP_008869.1
UniGene:Hs.464734 PDB:1B34 PDBsum:1B34 ProteinModelPortal:P62314
SMR:P62314 DIP:DIP-31207N IntAct:P62314 MINT:MINT-1530147
STRING:P62314 PhosphoSite:P62314 DMDM:51338665 PaxDb:P62314
PeptideAtlas:P62314 PRIDE:P62314 DNASU:6632 Ensembl:ENST00000300413
GeneID:6632 KEGG:hsa:6632 UCSC:uc002ktj.1 GeneCards:GC18P019192
HGNC:HGNC:11158 HPA:HPA040516 MIM:601063 neXtProt:NX_P62314
PharmGKB:PA164742464 InParanoid:P62314 PhylomeDB:P62314
ChiTaRS:SNRPD1 EvolutionaryTrace:P62314 GenomeRNAi:6632
NextBio:25835 Bgee:P62314 CleanEx:HS_SNRPD1 Genevestigator:P62314
GermOnline:ENSG00000167088 Uniprot:P62314
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 60 -IRGNNIRYFILP-DSLPLDTL 79
>UNIPROTKB|F2Z5G9 [details] [associations]
symbol:SNRPD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00510000047245
KO:K11087 OMA:KMTIKNR EMBL:CU633960 RefSeq:XP_003127902.1
ProteinModelPortal:F2Z5G9 SMR:F2Z5G9 PRIDE:F2Z5G9
Ensembl:ENSSSCT00000004100 GeneID:100524872 KEGG:ssc:100524872
Uniprot:F2Z5G9
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 60 -IRGNNIRYFILP-DSLPLDTL 79
>MGI|MGI:98344 [details] [associations]
symbol:Snrpd1 "small nuclear ribonucleoprotein D1"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] MGI:MGI:98344 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338 CTD:6632
GeneTree:ENSGT00510000047245 HOVERGEN:HBG061491 KO:K11087
OMA:KMTIKNR OrthoDB:EOG4933KF ChiTaRS:SNRPD1 EMBL:M58558
EMBL:AK005517 EMBL:AK007674 EMBL:AK011455 EMBL:AK013075
EMBL:AK134582 EMBL:AK135979 EMBL:BC024875 IPI:IPI00322749
RefSeq:NP_033252.1 UniGene:Mm.603 ProteinModelPortal:P62315
SMR:P62315 MINT:MINT-124808 STRING:P62315 PhosphoSite:P62315
PaxDb:P62315 PRIDE:P62315 Ensembl:ENSMUST00000002551 GeneID:20641
KEGG:mmu:20641 UCSC:uc008eaz.1 InParanoid:P62315 NextBio:299047
Bgee:P62315 CleanEx:MM_SNRPD1 Genevestigator:P62315
GermOnline:ENSMUSG00000002477 Uniprot:P62315
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 60 -IRGNNIRYFILP-DSLPLDTL 79
>RGD|1306345 [details] [associations]
symbol:Snrpd1 "small nuclear ribonucleoprotein D1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] RGD:1306345 INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0003676 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 CTD:6632
GeneTree:ENSGT00510000047245 HOVERGEN:HBG061491 KO:K11087
OrthoDB:EOG4933KF EMBL:BC167095 EMBL:CH474073 IPI:IPI00363471
RefSeq:NP_001099633.1 UniGene:Rn.18606 SMR:B2RZB7 STRING:B2RZB7
Ensembl:ENSRNOT00000018646 GeneID:291794 KEGG:rno:291794
UCSC:RGD:1306345 NextBio:633174 Genevestigator:B2RZB7
Uniprot:B2RZB7
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 60 -IRGNNIRYFILP-DSLPLDTL 79
>ZFIN|ZDB-GENE-020419-14 [details] [associations]
symbol:snrpd1 "small nuclear ribonucleoprotein D1
polypeptide" species:7955 "Danio rerio" [GO:0007507 "heart
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-020419-14 GO:GO:0007507
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
InterPro:IPR027141 PANTHER:PTHR23338 HSSP:P62314 CTD:6632
GeneTree:ENSGT00510000047245 HOVERGEN:HBG061491 KO:K11087
OMA:KMTIKNR OrthoDB:EOG4933KF EMBL:CU424444 EMBL:BC071543
EMBL:AF506225 IPI:IPI00500002 RefSeq:NP_775359.1 UniGene:Dr.76122
SMR:Q8JHH1 STRING:Q8JHH1 Ensembl:ENSDART00000013217 GeneID:192331
KEGG:dre:192331 InParanoid:Q8JHH1 NextBio:20797167 Uniprot:Q8JHH1
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLE--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY LP D + +D L
Sbjct: 59 SIRGNNIRYFILP-DSLPLDTL 79
>ASPGD|ASPL0000032943 [details] [associations]
symbol:AN10719 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0030490
"maturation of SSU-rRNA" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001305 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OMA:YISTSTK HOGENOM:HOG000223542
EnsemblFungi:CADANIAT00003251 Uniprot:C8VFC9
Length = 80
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE ++ + S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTR--SYGDAFIRG 71
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 72 NNVLYI 77
>UNIPROTKB|F1NLM5 [details] [associations]
symbol:SNRPD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00510000047245
OMA:KMTIKNR EMBL:AADN02001243 IPI:IPI00601699
Ensembl:ENSGALT00000019325 Uniprot:F1NLM5
Length = 121
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ VD +N L+ ++ +++ P L + IRG+ +RY LP
Sbjct: 17 VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS--IRGNNIRYFILP- 73
Query: 75 DGVDVDLL 82
D + +D L
Sbjct: 74 DSLPLDTL 81
>UNIPROTKB|P62312 [details] [associations]
symbol:LSM6 "U6 snRNA-associated Sm-like protein LSm6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238098 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:CH471056 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0030532
GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 EMBL:AF182292 EMBL:AK312126 EMBL:AC097372
EMBL:BC016026 IPI:IPI00001146 RefSeq:NP_009011.1 UniGene:Hs.190520
ProteinModelPortal:P62312 SMR:P62312 DIP:DIP-31128N IntAct:P62312
STRING:P62312 PhosphoSite:P62312 DMDM:61227727 PaxDb:P62312
PeptideAtlas:P62312 PRIDE:P62312 DNASU:11157
Ensembl:ENST00000296581 Ensembl:ENST00000502781
Ensembl:ENST00000504181 Ensembl:ENST00000515311 GeneID:11157
KEGG:hsa:11157 UCSC:uc003ikq.4 CTD:11157 GeneCards:GC04P147097
HGNC:HGNC:17017 HPA:HPA045079 MIM:607286 neXtProt:NX_P62312
PharmGKB:PA128394584 HOVERGEN:HBG052369 InParanoid:P62312
OMA:YISTSTK OrthoDB:EOG4Q2DH6 PhylomeDB:P62312 GenomeRNAi:11157
NextBio:42433 ArrayExpress:P62312 Bgee:P62312 CleanEx:HS_LSM6
Genevestigator:P62312 GermOnline:ENSG00000164167 Uniprot:P62312
Length = 80
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>MGI|MGI:1925901 [details] [associations]
symbol:Lsm6 "LSM6 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
MGI:MGI:1925901 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
GO:GO:0008033 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006364
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 EMBL:AK019126 EMBL:BC030427 IPI:IPI00129873
RefSeq:NP_001177933.1 RefSeq:NP_084421.1 UniGene:Mm.28694
ProteinModelPortal:P62313 SMR:P62313 STRING:P62313
PhosphoSite:P62313 PaxDb:P62313 PRIDE:P62313
Ensembl:ENSMUST00000051867 Ensembl:ENSMUST00000130325 GeneID:78651
KEGG:mmu:78651 InParanoid:P62313 NextBio:349274 Bgee:P62313
Genevestigator:P62313 GermOnline:ENSMUSG00000031683 Uniprot:P62313
Length = 80
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>TAIR|locus:2091102 [details] [associations]
symbol:AT3G07590 "AT3G07590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005774 EMBL:CP002686 GO:GO:0003676 GO:GO:0030529
EMBL:AC009176 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000182713 InterPro:IPR027141 PANTHER:PTHR23338
HSSP:P62314 KO:K11087 OMA:KMTIKNR UniGene:At.18333 EMBL:AY069907
EMBL:AY087568 EMBL:AY124838 IPI:IPI00528802 RefSeq:NP_001189837.1
RefSeq:NP_187416.1 ProteinModelPortal:Q9SSF1 SMR:Q9SSF1
STRING:Q9SSF1 PaxDb:Q9SSF1 PRIDE:Q9SSF1 EnsemblPlants:AT3G07590.1
EnsemblPlants:AT3G07590.2 GeneID:819950 KEGG:ath:AT3G07590
TAIR:At3g07590 InParanoid:Q9SSF1 PhylomeDB:Q9SSF1
ProtClustDB:CLSN2684847 Genevestigator:Q9SSF1 Uniprot:Q9SSF1
Length = 114
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATR 87
+RG+ +RY LP D ++++ L+ D R
Sbjct: 59 SLRGNNIRYYILP-DSLNLETLLVEDTPR 86
>TAIR|locus:2080487 [details] [associations]
symbol:LSM6A "AT3G59810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
EMBL:CP002686 EMBL:AL138647 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P54999 KO:K12625
OMA:YISTSTK ProtClustDB:CLSN2683093 EMBL:BT002850 EMBL:BT004433
IPI:IPI00517943 PIR:T47805 RefSeq:NP_191540.1 UniGene:At.34551
ProteinModelPortal:Q9M1Z3 SMR:Q9M1Z3 IntAct:Q9M1Z3 STRING:Q9M1Z3
PRIDE:Q9M1Z3 EnsemblPlants:AT3G59810.1 GeneID:825150
KEGG:ath:AT3G59810 TAIR:At3g59810 InParanoid:Q9M1Z3
PhylomeDB:Q9M1Z3 ArrayExpress:Q9M1Z3 Genevestigator:Q9M1Z3
Uniprot:Q9M1Z3
Length = 91
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K + GR V V+L + + RGTL +D Y+NI +E T + + + FIRG+
Sbjct: 18 FLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLKNKYG--DAFIRGN 75
Query: 66 VVRYV 70
V Y+
Sbjct: 76 NVLYI 80
>WB|WBGene00003080 [details] [associations]
symbol:lsm-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0040010 GO:GO:0002119
GO:GO:0010171 GO:GO:0040011 GO:GO:0040002 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K12625 OMA:YISTSTK HOGENOM:HOG000223542
EMBL:FO080942 GeneTree:ENSGT00700000104493 HSSP:Q8ZYG5
RefSeq:NP_490883.1 ProteinModelPortal:Q95XN6 SMR:Q95XN6
STRING:Q95XN6 PaxDb:Q95XN6 EnsemblMetazoa:Y71G12B.14 GeneID:190601
KEGG:cel:CELE_Y71G12B.14 UCSC:Y71G12B.14 CTD:190601
WormBase:Y71G12B.14 InParanoid:Q95XN6 NextBio:946330 Uniprot:Q95XN6
Length = 77
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++G+ V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVLYI 72
>WB|WBGene00003078 [details] [associations]
symbol:lsm-4 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0008380 GO:GO:0006397 GO:GO:0010171 GO:GO:0040011
GO:GO:0003723 GO:GO:0030529 GO:GO:0007281 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:FO080735 PIR:T16234
RefSeq:NP_495514.1 ProteinModelPortal:Q19952 SMR:Q19952
IntAct:Q19952 STRING:Q19952 PaxDb:Q19952 EnsemblMetazoa:F32A5.7
GeneID:174193 KEGG:cel:CELE_F32A5.7 UCSC:F32A5.7 CTD:3772280
WormBase:F32A5.7 InParanoid:Q19952 NextBio:882941 Uniprot:Q19952
Length = 123
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+L S K + VELKN G L + D ++NI L + +D +
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDG-DKFFKMSEA 60
Query: 61 FIRGSVVRYVQLPPDGVDV 79
++RGS ++Y+++P VD+
Sbjct: 61 YVRGSTIKYLRIPETVVDL 79
>DICTYBASE|DDB_G0278027 [details] [associations]
symbol:snrpD1 "putative small nuclear
ribonucleoprotein D1" species:44689 "Dictyostelium discoideum"
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0278027
INTERPRO:IPR001163 GenomeReviews:CM000152_GR EMBL:AAFI02000023
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
KO:K11087 OMA:KMTIKNR RefSeq:XP_642077.1 ProteinModelPortal:Q54YX5
SMR:Q54YX5 STRING:Q54YX5 PRIDE:Q54YX5 EnsemblProtists:DDB0233192
GeneID:8621290 KEGG:ddi:DDB_G0278027 InParanoid:Q54YX5
Uniprot:Q54YX5
Length = 131
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN ++G++ VD +N L+ ++ + K P L +
Sbjct: 1 MKLVRFLMKLHNETVTIELKNGTIVQGSVAGVDVSMNTHLKTVKLTLKGKNPVNLDTLS- 59
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREAR 91
IRG+ +RY LP + L+ D + +A+
Sbjct: 60 -IRGNNIRYFILPESLNLGTLLVDDTPKVKAK 90
>UNIPROTKB|E1BY33 [details] [associations]
symbol:LSM10 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000084 "S phase of mitotic cell cycle" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0015030 GO:GO:0000084
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 OMA:WGHQVEL
GO:GO:0005683 GO:GO:0071208 GeneTree:ENSGT00510000048364
InterPro:IPR006649 SMART:SM00651 EMBL:AADN02043869 IPI:IPI00598760
Ensembl:ENSGALT00000003324 Uniprot:E1BY33
Length = 122
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L G TV+L+++ G + +VD ++N++L V D+ + + F+ G VRY
Sbjct: 24 LHGHVTTVDLRDESTATGRVANVDAFMNMRL--AEVTFTDRRGEVSQLDEIFVTGRNVRY 81
Query: 70 VQLPPDGVDV 79
V +P D VD+
Sbjct: 82 VHIP-DEVDI 90
>ZFIN|ZDB-GENE-040625-50 [details] [associations]
symbol:lsm6 "LSM6 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040625-50 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 CTD:11157 HOVERGEN:HBG052369 OMA:YISTSTK
OrthoDB:EOG4Q2DH6 HOGENOM:HOG000223542 GeneTree:ENSGT00700000104493
EMBL:BX324156 EMBL:BC072549 IPI:IPI00851796 RefSeq:NP_001002077.1
UniGene:Dr.81719 STRING:Q6IMW9 Ensembl:ENSDART00000053773
Ensembl:ENSDART00000147458 GeneID:415167 KEGG:dre:415167
InParanoid:Q6IMW9 NextBio:20818839 Uniprot:Q6IMW9
Length = 80
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI +E T + + + F+RG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKYG--DAFLRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>FB|FBgn0034564 [details] [associations]
symbol:CG9344 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005688 "U6 snRNP"
evidence=NAS] INTERPRO:IPR001163 EMBL:AE013599 GO:GO:0005681
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P54999 KO:K12625 OMA:YISTSTK GeneTree:ENSGT00700000104493
EMBL:AY113474 RefSeq:NP_611528.1 UniGene:Dm.18844 SMR:Q9W2P5
IntAct:Q9W2P5 MINT:MINT-967510 STRING:Q9W2P5
EnsemblMetazoa:FBtr0071520 GeneID:37372 KEGG:dme:Dmel_CG9344
UCSC:CG9344-RA FlyBase:FBgn0034564 InParanoid:Q9W2P5
OrthoDB:EOG45DV65 GenomeRNAi:37372 NextBio:803315 Uniprot:Q9W2P5
Length = 79
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ + GR V V+L N + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVLYI 72
>SGD|S000002786 [details] [associations]
symbol:LSM6 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005688 "U6 snRNP" evidence=IDA;TAS]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=IPI] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0030490 "maturation of SSU-rRNA"
evidence=IMP] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] SGD:S000002786 INTERPRO:IPR001163 GO:GO:0005730
EMBL:BK006938 GO:GO:0003723 GO:GO:0008033 EMBL:U28373 GO:GO:0000932
GO:GO:0000956 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0030490 GO:GO:0005732 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K12625 OrthoDB:EOG4CC7B6 HOGENOM:HOG000223542 PIR:S61173
RefSeq:NP_010666.2 ProteinModelPortal:Q06406 SMR:Q06406
DIP:DIP-1418N IntAct:Q06406 MINT:MINT-403097 STRING:Q06406
PaxDb:Q06406 PeptideAtlas:Q06406 EnsemblFungi:YDR378C GeneID:851984
KEGG:sce:YDR378C OMA:FMNVALS NextBio:970136 Genevestigator:Q06406
GermOnline:YDR378C Uniprot:Q06406
Length = 86
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC--FIR 63
+ D++G+ V V+L + L G L S+D ++N+ L + + +L+ N F+R
Sbjct: 15 FLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLR 74
Query: 64 GSVVRYV 70
G+ V Y+
Sbjct: 75 GTQVMYI 81
>POMBASE|SPAC2F3.17c [details] [associations]
symbol:lsm6 "U6 snRNP-associated protein Lsm6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] PomBase:SPAC2F3.17c
INTERPRO:IPR001163 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0045292 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 PDB:3SWN PDB:4EMK PDBsum:3SWN
PDBsum:4EMK KO:K12625 OMA:YISTSTK OrthoDB:EOG4CC7B6 PIR:T38534
RefSeq:NP_594380.1 ProteinModelPortal:Q9UUI1 STRING:Q9UUI1
EnsemblFungi:SPAC2F3.17c.1 GeneID:2541997 KEGG:spo:SPAC2F3.17c
HOGENOM:HOG000223542 EvolutionaryTrace:Q9UUI1 NextBio:20803078
Uniprot:Q9UUI1
Length = 75
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ ++G++V + L + + +G L +D Y+N+ LE T K ++ + FIRG+
Sbjct: 8 FLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYG--DAFIRGN 65
Query: 66 VVRYVQLPPD 75
V YV D
Sbjct: 66 NVLYVSALDD 75
>WB|WBGene00004914 [details] [associations]
symbol:snr-1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0032940 "secretion by cell" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0043186 "P granule" evidence=IDA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0006397 GO:GO:0000003 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 EMBL:AL117204 EMBL:U23937 PIR:T31498
RefSeq:NP_503027.1 ProteinModelPortal:Q17348 SMR:Q17348
IntAct:Q17348 STRING:Q17348 PaxDb:Q17348
EnsemblMetazoa:Y116A8C.42.1 EnsemblMetazoa:Y116A8C.42.2
GeneID:178483 KEGG:cel:CELE_Y116A8C.42 UCSC:Y116A8C.42.1 CTD:178483
WormBase:Y116A8C.42 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 InParanoid:Q17348 KO:K11088 OMA:ESIPIKV
NextBio:901312 Uniprot:Q17348
Length = 136
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G VT+E RG L + +N +L T V +D H L N FIRG+ +R++
Sbjct: 16 GHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLD--NVFIRGNKIRFMI 73
Query: 72 LP 73
LP
Sbjct: 74 LP 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.142 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 93 93 0.00091 102 3 11 22 0.46 29
29 0.41 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 506 (54 KB)
Total size of DFA: 97 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.30u 0.12s 10.42t Elapsed: 00:00:01
Total cpu time: 10.31u 0.12s 10.43t Elapsed: 00:00:01
Start: Thu May 9 17:07:09 2013 End: Thu May 9 17:07:10 2013