BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034490
(93 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255567664|ref|XP_002524811.1| Speckle-type POZ protein, putative [Ricinus communis]
gi|223535995|gb|EEF37654.1| Speckle-type POZ protein, putative [Ricinus communis]
Length = 500
Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 90/92 (97%), Positives = 92/92 (100%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 409 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 468
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLPP+GVD+DLLHDATRREARGG
Sbjct: 469 IRGSVVRYVQLPPEGVDIDLLHDATRREARGG 500
>gi|296086695|emb|CBI32330.3| unnamed protein product [Vitis vinifera]
Length = 137
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 93/93 (100%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 45 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 104
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPP+GVD++LLHDATRREARGG
Sbjct: 105 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 137
>gi|224073260|ref|XP_002304049.1| predicted protein [Populus trichocarpa]
gi|224118384|ref|XP_002331469.1| predicted protein [Populus trichocarpa]
gi|118484877|gb|ABK94305.1| unknown [Populus trichocarpa]
gi|222841481|gb|EEE79028.1| predicted protein [Populus trichocarpa]
gi|222873547|gb|EEF10678.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/93 (97%), Positives = 93/93 (100%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPP+GVDVDLLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 93
>gi|359479792|ref|XP_002271534.2| PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis
vinifera]
Length = 489
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/92 (96%), Positives = 92/92 (100%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 398 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 457
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLPP+GVD++LLHDATRREARGG
Sbjct: 458 IRGSVVRYVQLPPEGVDIELLHDATRREARGG 489
>gi|449436291|ref|XP_004135926.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
1 [Cucumis sativus]
gi|449436293|ref|XP_004135927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
2 [Cucumis sativus]
gi|449436295|ref|XP_004135928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
3 [Cucumis sativus]
gi|449489026|ref|XP_004158193.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
1 [Cucumis sativus]
gi|449489028|ref|XP_004158194.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
2 [Cucumis sativus]
gi|449489032|ref|XP_004158195.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
3 [Cucumis sativus]
Length = 93
Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/93 (97%), Positives = 93/93 (100%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPPDGVDV+LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELLHDATRREARGG 93
>gi|357511085|ref|XP_003625831.1| SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula]
gi|355500846|gb|AES82049.1| SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula]
gi|388519597|gb|AFK47860.1| unknown [Lotus japonicus]
Length = 93
Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 93/93 (100%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPP+GVD++LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>gi|118483945|gb|ABK93861.1| unknown [Populus trichocarpa]
Length = 93
Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 92/93 (98%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVG+EVTVELKNDLAIRG LHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGKEVTVELKNDLAIRGNLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPP+GVDVDLLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 93
>gi|388498296|gb|AFK37214.1| unknown [Medicago truncatula]
Length = 93
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 92/93 (98%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD+YPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDRYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPP+GVD++LLHDATRREAR G
Sbjct: 61 FIRGSVVRYVQLPPEGVDIELLHDATRREARSG 93
>gi|18379085|ref|NP_563682.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
gi|297848550|ref|XP_002892156.1| hypothetical protein ARALYDRAFT_470311 [Arabidopsis lyrata subsp.
lyrata]
gi|98961007|gb|ABF58987.1| At1g03330 [Arabidopsis thaliana]
gi|297337998|gb|EFH68415.1| hypothetical protein ARALYDRAFT_470311 [Arabidopsis lyrata subsp.
lyrata]
gi|332189439|gb|AEE27560.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 93
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 91/93 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLP DGVDVDLLHDA RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93
>gi|116780108|gb|ABK21554.1| unknown [Picea sitchensis]
gi|116790929|gb|ABK25794.1| unknown [Picea sitchensis]
Length = 93
Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/93 (93%), Positives = 92/93 (98%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV+QDKYPHMLSV+NC
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LPPDGVDVD+LHDATRREARGG
Sbjct: 61 FIRGSVVRYVLLPPDGVDVDILHDATRREARGG 93
>gi|3850571|gb|AAC72111.1| Similar to gb|U85207 snRNP core Sm protein homolog Sm-X5 from Mus
musculus. EST gb|AA612141 comes from this gene
[Arabidopsis thaliana]
Length = 114
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 23 LFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 82
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLP DGVDVDLLHDA RREARGG
Sbjct: 83 IRGSVVRYVQLPKDGVDVDLLHDAARREARGG 114
>gi|21553911|gb|AAM62994.1| snRNP core Sm protein Sm-X5-like protein [Arabidopsis thaliana]
Length = 93
Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 90/93 (96%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLP DGVDVDLLH A RREARGG
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLLHGAARREARGG 93
>gi|226510250|ref|NP_001152698.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|195659125|gb|ACG49030.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|413917383|gb|AFW57315.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
Length = 93
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LP DGVDVD+LHDATRREARGG
Sbjct: 61 FIRGSVVRYVLLPQDGVDVDILHDATRREARGG 93
>gi|297607988|ref|NP_001061016.2| Os08g0154700 [Oryza sativa Japonica Group]
gi|242078209|ref|XP_002443873.1| hypothetical protein SORBIDRAFT_07g003620 [Sorghum bicolor]
gi|357145002|ref|XP_003573488.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Brachypodium distachyon]
gi|195656753|gb|ACG47844.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|215769192|dbj|BAH01421.1| unnamed protein product [Oryza sativa Japonica Group]
gi|241940223|gb|EES13368.1| hypothetical protein SORBIDRAFT_07g003620 [Sorghum bicolor]
gi|255678156|dbj|BAF22930.2| Os08g0154700 [Oryza sativa Japonica Group]
gi|326493970|dbj|BAJ85447.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326512672|dbj|BAJ99691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326530750|dbj|BAK01173.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|413921285|gb|AFW61217.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
Length = 93
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/93 (93%), Positives = 91/93 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LP DGVD+D+LHDATRREARGG
Sbjct: 61 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 93
>gi|356504912|ref|XP_003521238.1| PREDICTED: BTB/POZ and MATH domain-containing protein 2-like
[Glycine max]
Length = 497
Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/92 (91%), Positives = 90/92 (97%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LFFSYFKDLVGREV VELKNDLAI+GTLHSVDQYLNIKLENT VV+Q+KYPHMLSVRNCF
Sbjct: 406 LFFSYFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNCF 465
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLPP+GVD++LLHDATRREARGG
Sbjct: 466 IRGSVVRYVQLPPEGVDIELLHDATRREARGG 497
>gi|351724271|ref|NP_001236540.1| uncharacterized protein LOC100305778 [Glycine max]
gi|255626583|gb|ACU13636.1| unknown [Glycine max]
Length = 93
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/93 (91%), Positives = 91/93 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFKDLVGREV VELKNDLAI+GTLHSVDQYLNIKLENT VV+Q+KYPHMLSVRNC
Sbjct: 1 MLFFSYFKDLVGREVIVELKNDLAIKGTLHSVDQYLNIKLENTSVVNQEKYPHMLSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPP+GVD++LLHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPEGVDIELLHDATRREARGG 93
>gi|218200492|gb|EEC82919.1| hypothetical protein OsI_27848 [Oryza sativa Indica Group]
Length = 120
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/92 (93%), Positives = 90/92 (97%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF
Sbjct: 29 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 88
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYV LP DGVD+D+LHDATRREARGG
Sbjct: 89 IRGSVVRYVLLPQDGVDIDILHDATRREARGG 120
>gi|37806009|dbj|BAC99422.1| putative snRNP core protein SMX5d [Oryza sativa Japonica Group]
Length = 288
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/93 (92%), Positives = 90/93 (96%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
LFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
Sbjct: 196 WLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 255
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LP DGVD+D+LHDATRREARGG
Sbjct: 256 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 288
>gi|168061307|ref|XP_001782631.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665864|gb|EDQ52534.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 93
Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/93 (90%), Positives = 88/93 (94%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFK+LVG+EV VELKNDLAI G LHSVDQYLNIKLENTRVVD KYPHMLSV+NC
Sbjct: 1 MLFFSYFKELVGKEVIVELKNDLAISGILHSVDQYLNIKLENTRVVDDTKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQLPPDGVDVD+LHDATRREARGG
Sbjct: 61 FIRGSVVRYVQLPPDGVDVDILHDATRREARGG 93
>gi|302783196|ref|XP_002973371.1| hypothetical protein SELMODRAFT_232056 [Selaginella
moellendorffii]
gi|302789528|ref|XP_002976532.1| hypothetical protein SELMODRAFT_175720 [Selaginella
moellendorffii]
gi|300155570|gb|EFJ22201.1| hypothetical protein SELMODRAFT_175720 [Selaginella
moellendorffii]
gi|300159124|gb|EFJ25745.1| hypothetical protein SELMODRAFT_232056 [Selaginella
moellendorffii]
Length = 93
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/92 (85%), Positives = 87/92 (94%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFSYFK+LVG+EVTVELKNDLAI G LHSVDQYLNIKLEN +VVD+ KYPHM+SV+NC
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAITGVLHSVDQYLNIKLENIKVVDEIKYPHMMSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYVQLP DGVDV++LHDATRREARG
Sbjct: 61 FIRGSVVRYVQLPVDGVDVEILHDATRREARG 92
>gi|307105968|gb|EFN54215.1| hypothetical protein CHLNCDRAFT_24936 [Chlorella variabilis]
Length = 93
Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/93 (84%), Positives = 85/93 (91%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+SYFK LVG+EVTVELKNDLAI GTLHSVDQYLNIKL N RVV++ KYPHMLSVR C
Sbjct: 1 MLFYSYFKTLVGKEVTVELKNDLAITGTLHSVDQYLNIKLNNIRVVNEQKYPHMLSVRAC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
F+RGSVVRYVQLPP VDV+LLHDATRREARGG
Sbjct: 61 FVRGSVVRYVQLPPGSVDVELLHDATRREARGG 93
>gi|384247675|gb|EIE21161.1| Sm-D1 protein [Coccomyxa subellipsoidea C-169]
Length = 92
Score = 163 bits (413), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 77/92 (83%), Positives = 83/92 (90%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+SYFK LVG+EVTVELKNDLAI G LHSVDQYLNIKL N VV++ KYPHM+SVRNC
Sbjct: 1 MLFYSYFKTLVGKEVTVELKNDLAITGILHSVDQYLNIKLNNVHVVNEQKYPHMMSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYVQLPP VDV+LLHDATRREARG
Sbjct: 61 FIRGSVVRYVQLPPGSVDVELLHDATRREARG 92
>gi|159464231|ref|XP_001690345.1| Sm-D1 protein [Chlamydomonas reinhardtii]
gi|158279845|gb|EDP05604.1| Sm-D1 protein [Chlamydomonas reinhardtii]
Length = 93
Score = 161 bits (407), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/93 (81%), Positives = 82/93 (88%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS FK LVG+EVTVELKNDL I G LHSVDQYLNIKL NTRV ++ KYPHM+SVRNC
Sbjct: 1 MLFFSLFKTLVGKEVTVELKNDLCISGALHSVDQYLNIKLTNTRVHNEQKYPHMMSVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LPP VDV++LHDATRREARGG
Sbjct: 61 FIRGSVVRYVHLPPGAVDVEVLHDATRREARGG 93
>gi|145340671|ref|XP_001415444.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575667|gb|ABO93736.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 130
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 81/92 (88%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+SYFK LVG+ VTVELKNDLAI GTL SVDQYLNIKLENTRV D+ +YPHM SVRNCF
Sbjct: 39 LFYSYFKTLVGKPVTVELKNDLAIAGTLVSVDQYLNIKLENTRVTDEARYPHMRSVRNCF 98
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLP VDVD+LHDATRREARG
Sbjct: 99 IRGSVVRYVQLPEAAVDVDILHDATRREARGA 130
>gi|303273532|ref|XP_003056127.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462211|gb|EEH59503.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 92
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 82/92 (89%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+SYFK L+G++VTVELKNDLAI G L SVDQYLNIKL+ T VVD+ +YPHM SVR+CF
Sbjct: 1 LFYSYFKTLMGKQVTVELKNDLAITGLLRSVDQYLNIKLQETVVVDEARYPHMSSVRSCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLPPD VDVD+LHDATRR+ARG
Sbjct: 61 IRGSVVRYVQLPPDAVDVDILHDATRRDARGA 92
>gi|412993679|emb|CCO14190.1| small nuclear ribonucleoprotein LSM2 [Bathycoccus prasinos]
Length = 94
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/93 (74%), Positives = 82/93 (88%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+++TVELKNDL IRGTL SVDQYLNIKLE+ V+D++KYPHM SVR+C
Sbjct: 1 MLFYSFFKTLVGKQITVELKNDLEIRGTLVSVDQYLNIKLESVSVLDEEKYPHMKSVRDC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
F+RGSVVRYVQ P + VDVD+LHDATRREAR
Sbjct: 61 FVRGSVVRYVQPPEESVDVDILHDATRREARSA 93
>gi|357628758|gb|EHJ77961.1| hypothetical protein KGM_13005 [Danaus plexippus]
Length = 95
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 77/90 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V+D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLSDISVIDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|242007296|ref|XP_002424477.1| Surfeit locus protein, putative [Pediculus humanus corporis]
gi|212507895|gb|EEB11739.1| Surfeit locus protein, putative [Pediculus humanus corporis]
Length = 401
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/90 (74%), Positives = 75/90 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL V D DKYPHMLS++NC
Sbjct: 307 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTEISVTDPDKYPHMLSIKNC 366
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 367 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 396
>gi|21358381|ref|NP_648570.1| CG10418 [Drosophila melanogaster]
gi|195327103|ref|XP_002030261.1| GM25341 [Drosophila sechellia]
gi|195376259|ref|XP_002046914.1| GJ13149 [Drosophila virilis]
gi|195493810|ref|XP_002094573.1| GE21899 [Drosophila yakuba]
gi|195589798|ref|XP_002084636.1| GD14374 [Drosophila simulans]
gi|7294589|gb|AAF49929.1| CG10418 [Drosophila melanogaster]
gi|194119204|gb|EDW41247.1| GM25341 [Drosophila sechellia]
gi|194154072|gb|EDW69256.1| GJ13149 [Drosophila virilis]
gi|194180674|gb|EDW94285.1| GE21899 [Drosophila yakuba]
gi|194196645|gb|EDX10221.1| GD14374 [Drosophila simulans]
gi|220951570|gb|ACL88328.1| CG10418-PA [synthetic construct]
Length = 95
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 90
>gi|346470701|gb|AEO35195.1| hypothetical protein [Amblyomma maculatum]
gi|427786045|gb|JAA58474.1| Putative u6 snrna-associated sm-like protein lsm2 [Rhipicephalus
pulchellus]
Length = 95
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 77/90 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL++ GTLHSVDQYLNIKL + V +QDKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSMCGTLHSVDQYLNIKLTDISVTEQDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|350410763|ref|XP_003489131.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Bombus
impatiens]
Length = 140
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+G++V VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NC
Sbjct: 46 MLFYSFFKSLIGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 105
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 106 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 135
>gi|241742042|ref|XP_002414155.1| conserved hypothetical protein [Ixodes scapularis]
gi|215508009|gb|EEC17463.1| conserved hypothetical protein [Ixodes scapularis]
gi|442754033|gb|JAA69176.1| Putative snrnp core protein [Ixodes ricinus]
Length = 96
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/92 (72%), Positives = 76/92 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDINVTDTEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEASS 92
>gi|195126148|ref|XP_002007536.1| GI13004 [Drosophila mojavensis]
gi|193919145|gb|EDW18012.1| GI13004 [Drosophila mojavensis]
Length = 95
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 90
>gi|125978707|ref|XP_001353386.1| GA10305 [Drosophila pseudoobscura pseudoobscura]
gi|195160603|ref|XP_002021164.1| GL25187 [Drosophila persimilis]
gi|54642144|gb|EAL30893.1| GA10305 [Drosophila pseudoobscura pseudoobscura]
gi|194118277|gb|EDW40320.1| GL25187 [Drosophila persimilis]
Length = 95
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP + VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPGEEVDTQLLQDAARKEA 90
>gi|345488169|ref|XP_001605095.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Nasonia
vitripennis]
Length = 95
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 90
>gi|195440762|ref|XP_002068209.1| GK10160 [Drosophila willistoni]
gi|194164294|gb|EDW79195.1| GK10160 [Drosophila willistoni]
Length = 106
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NCF
Sbjct: 13 LFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCF 72
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 73 IRGSVVRYVQLPGDEVDTQLLQDAARKEA 101
>gi|61097894|ref|NP_571571.1| U6 snRNA-associated Sm-like protein LSm2 [Danio rerio]
gi|55715812|gb|AAH85441.1| Smx5 [Danio rerio]
gi|156229994|gb|AAI52151.1| Smx5 [Danio rerio]
gi|182891394|gb|AAI64435.1| Smx5 protein [Danio rerio]
Length = 95
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|62858431|ref|NP_001016402.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|163838653|ref|NP_001106211.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|60618387|gb|AAH90606.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|62871721|gb|AAH94397.1| Lsm2 protein [Xenopus laevis]
gi|89273744|emb|CAJ81423.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|226372864|gb|ACO52057.1| U6 snRNA-associated Sm-like protein LSm2 [Rana catesbeiana]
Length = 95
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|318103625|ref|NP_001188170.1| u6 snRNA-associated sm-like protein lsm2 [Ictalurus punctatus]
gi|432855577|ref|XP_004068255.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Oryzias
latipes]
gi|308323693|gb|ADO28982.1| u6 snRNA-associated sm-like protein lsm2 [Ictalurus punctatus]
Length = 95
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|194869802|ref|XP_001972524.1| GG15573 [Drosophila erecta]
gi|190654307|gb|EDV51550.1| GG15573 [Drosophila erecta]
Length = 112
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NCF
Sbjct: 19 LFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCF 78
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 79 IRGSVVRYVQLPGDEVDTQLLQDAARKEA 107
>gi|195012846|ref|XP_001983759.1| GH15400 [Drosophila grimshawi]
gi|193897241|gb|EDV96107.1| GH15400 [Drosophila grimshawi]
Length = 104
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NCF
Sbjct: 11 LFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCF 70
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 71 IRGSVVRYVQLPGDEVDTQLLQDAARKEA 99
>gi|10863977|ref|NP_067000.1| U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gi|155372081|ref|NP_001094647.1| U6 snRNA-associated Sm-like protein LSm2 [Bos taurus]
gi|158533995|ref|NP_001103571.1| U6 snRNA-associated Sm-like protein LSm2 isoform 2 [Mus musculus]
gi|178056596|ref|NP_001116608.1| U6 snRNA-associated Sm-like protein LSm2 [Sus scrofa]
gi|226443174|ref|NP_001140070.1| U6 snRNA-associated Sm-like protein LSm2 [Salmo salar]
gi|260064052|ref|NP_001159394.1| LSM2 homolog, U6 small nuclear RNA associated isoform 2 [Rattus
norvegicus]
gi|386781369|ref|NP_001247614.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|73972304|ref|XP_532081.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Canis lupus
familiaris]
gi|291395796|ref|XP_002714328.1| PREDICTED: LSM2 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296197733|ref|XP_002746407.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Callithrix
jacchus]
gi|297677734|ref|XP_002816713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Pongo
abelii]
gi|327286769|ref|XP_003228102.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Anolis
carolinensis]
gi|332246070|ref|XP_003272173.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nomascus
leucogenys]
gi|332823648|ref|XP_518362.3| PREDICTED: uncharacterized protein LOC462569 [Pan troglodytes]
gi|348576468|ref|XP_003474009.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Cavia
porcellus]
gi|395832028|ref|XP_003789080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Otolemur
garnettii]
gi|397523138|ref|XP_003831598.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Pan
paniscus]
gi|402866510|ref|XP_003897424.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Papio
anubis]
gi|403307821|ref|XP_003944381.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Saimiri
boliviensis boliviensis]
gi|426250528|ref|XP_004018987.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Ovis aries]
gi|10720079|sp|Q9Y333.1|LSM2_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Protein G7b; AltName: Full=Small nuclear
ribonuclear protein D homolog; AltName: Full=snRNP core
Sm-like protein Sm-x5
gi|52783102|sp|O35900.1|LSM2_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Protein G7b; AltName: Full=snRNP core Sm-like
protein Sm-x5
gi|5919145|gb|AAD56226.1|AF182288_1 U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gi|12239339|gb|AAG49438.1|AF136977_1 snRNP core SM-like protein SM-x5 [Homo sapiens]
gi|16118494|gb|AAL14450.1|AF397035_3 small ribonuclear protein G7b [Mus musculus]
gi|16118503|gb|AAL14458.1|AF397036_3 small ribonuclear protein G7b [Mus musculus]
gi|2463648|gb|AAB72037.1| snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gi|4529895|gb|AAD21818.1| snRNP [Homo sapiens]
gi|5701852|emb|CAB52190.1| G7b protein [Homo sapiens]
gi|11225487|gb|AAG33023.1| SMX5-like protein [Homo sapiens]
gi|14327936|gb|AAH09192.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|15277249|dbj|BAB63302.1| small nuclear ribonuclear protein D homolog [Homo sapiens]
gi|15679962|gb|AAH14288.1| Lsm2 protein [Mus musculus]
gi|49457288|emb|CAG46943.1| LSM2 [Homo sapiens]
gi|49457310|emb|CAG46954.1| LSM2 [Homo sapiens]
gi|74195973|dbj|BAE30544.1| unnamed protein product [Mus musculus]
gi|119623930|gb|EAX03525.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123988106|gb|ABM83829.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|124000059|gb|ABM87538.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|147225158|emb|CAN13335.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Sus scrofa]
gi|148694757|gb|EDL26704.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149028025|gb|EDL83476.1| rCG38360, isoform CRA_b [Rattus norvegicus]
gi|151557081|gb|AAI50006.1| LSM2 protein [Bos taurus]
gi|208968015|dbj|BAG73846.1| U6 snRNA-associated Sm-like protein LSm2 [synthetic construct]
gi|221221672|gb|ACM09497.1| U6 snRNA-associated Sm-like protein LSm2 [Salmo salar]
gi|296474271|tpg|DAA16386.1| TPA: LSM2 homolog, U6 small nuclear RNA associated [Bos taurus]
gi|355561546|gb|EHH18178.1| hypothetical protein EGK_14728 [Macaca mulatta]
gi|355762482|gb|EHH61980.1| hypothetical protein EGM_20136 [Macaca fascicularis]
gi|380785271|gb|AFE64511.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|383411271|gb|AFH28849.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|384943564|gb|AFI35387.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|387019545|gb|AFJ51890.1| U6 snRNA-associated Sm-like protein LSm2 [Crotalus adamanteus]
gi|410206872|gb|JAA00655.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410253898|gb|JAA14916.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410290348|gb|JAA23774.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410329143|gb|JAA33518.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 95
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|331243742|ref|XP_003334513.1| U6 snRNA-associated Sm-like protein LSm2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309313503|gb|EFP90094.1| U6 snRNA-associated Sm-like protein LSm2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 96
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 78/90 (86%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L G+EVT+ELKNDLAI+GTL SVDQ+LN+KLEN +V+DQ+++PHM++V+NC
Sbjct: 1 MLIFSVFKTLTGQEVTIELKNDLAIQGTLASVDQFLNLKLENIKVLDQERHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQ+P VD LL DATR+EA
Sbjct: 61 FIRGSVVRYVQIPKAAVDTQLLEDATRKEA 90
>gi|110760170|ref|XP_001120188.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Apis
mellifera]
gi|340719471|ref|XP_003398177.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Bombus
terrestris]
gi|380029303|ref|XP_003698316.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Apis
florea]
Length = 95
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+G++V VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLIGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 90
>gi|383863071|ref|XP_003707006.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Megachile
rotundata]
Length = 112
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+G++V VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NC
Sbjct: 18 MLFYSFFKSLIGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 77
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 78 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 107
>gi|321473278|gb|EFX84246.1| hypothetical protein DAPPUDRAFT_209723 [Daphnia pulex]
Length = 95
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 78/91 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + + D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISITDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYVQLPP+ VD LL DA R+E++
Sbjct: 61 FIRGSVVRYVQLPPEEVDHQLLQDAARKESQ 91
>gi|417407887|gb|JAA50536.1| Putative snrnp core protein, partial [Desmodus rotundus]
Length = 127
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 33 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 92
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 93 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 122
>gi|270001426|gb|EEZ97873.1| hypothetical protein TcasGA2_TC000255 [Tribolium castaneum]
Length = 95
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 76/92 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYVQLP D VD LL D+ R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDSARKEATA 92
>gi|195102462|ref|XP_001998083.1| GH23600 [Drosophila grimshawi]
gi|193905529|gb|EDW04396.1| GH23600 [Drosophila grimshawi]
Length = 94
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/89 (76%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D DKYPHMLSV+NCF
Sbjct: 1 LFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 IRGSVVRYVQLPGDEVDTQLLQDAARKEA 89
>gi|115774627|ref|XP_792582.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Strongylocentrotus purpuratus]
Length = 95
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQ+LNIKL + V DQ++YPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVIVELKNDLSIGGTLHSVDQFLNIKLTDISVTDQERYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D D LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADECDTQLLQDAARKEA 90
>gi|157118346|ref|XP_001653182.1| small nuclear ribonucleoprotein Sm D1, putative [Aedes aegypti]
gi|158292631|ref|XP_314020.2| AGAP005136-PA [Anopheles gambiae str. PEST]
gi|108883305|gb|EAT47530.1| AAEL001363-PA [Aedes aegypti]
gi|157017082|gb|EAA09471.3| AGAP005136-PA [Anopheles gambiae str. PEST]
Length = 95
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPGDEVDTQLLQDAARKEA 90
>gi|313234834|emb|CBY24778.1| unnamed protein product [Oikopleura dioica]
gi|313246057|emb|CBY35020.1| unnamed protein product [Oikopleura dioica]
Length = 99
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 77/93 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EVTVELKNDLAI GTLHSVDQYLNIKL + V +Q+KYPH+LSV+NC
Sbjct: 1 MLFYSFFKSLVGKEVTVELKNDLAITGTLHSVDQYLNIKLNDIFVTEQEKYPHLLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV+LP + +D LL D R+EA
Sbjct: 61 FIRGSVVRYVRLPAEEIDHQLLQDTARKEAESN 93
>gi|397569438|gb|EJK46745.1| hypothetical protein THAOC_34574 [Thalassiosira oceanica]
Length = 849
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/93 (66%), Positives = 78/93 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LVGRE+ VELKND+ + GTLHSVDQYLNIKL + RVV+QD+YP +++++NC
Sbjct: 753 MLFFSFFKTLVGREIAVELKNDVVLTGTLHSVDQYLNIKLTSVRVVNQDRYPQLVALKNC 812
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYVQ+ P V+ +LL DATR+E G
Sbjct: 813 FIRGSVVRYVQITPSDVNTELLQDATRKEHSQG 845
>gi|348513603|ref|XP_003444331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Oreochromis niloticus]
Length = 121
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 27 LLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 86
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 87 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 116
>gi|340374852|ref|XP_003385951.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Amphimedon queenslandica]
Length = 112
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 76/92 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + + D DKYPHMLSV+NCF
Sbjct: 3 LFYSFFKSLVGKEVIVELKNDLSIHGTLHSVDQYLNIKLTDISIPDPDKYPHMLSVKNCF 62
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSV+RYVQLP + VD LL DATR+E G
Sbjct: 63 IRGSVIRYVQLPAEEVDTGLLQDATRKELAQG 94
>gi|301792294|ref|XP_002931116.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Ailuropoda melanoleuca]
Length = 98
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 4 LLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 63
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 64 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 93
>gi|291230978|ref|XP_002735441.1| PREDICTED: LSM2 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 96
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQ+LNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|198426293|ref|XP_002128585.1| PREDICTED: similar to LSM2 homolog, U6 small nuclear RNA
associated [Ciona intestinalis]
Length = 95
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
F+RGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FVRGSVVRYVQLPADEVDTGLLQDAARKEA 90
>gi|194747125|ref|XP_001956003.1| GF24817 [Drosophila ananassae]
gi|190623285|gb|EDV38809.1| GF24817 [Drosophila ananassae]
Length = 98
Score = 141 bits (356), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 5 LFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 64
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 65 IRGSVVRYVQLPGDEVDTQLLQDAARKEA 93
>gi|229365986|gb|ACQ57973.1| U6 snRNA-associated Sm-like protein LSm2 [Anoplopoma fimbria]
Length = 95
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 75/90 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I G LHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGALHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|354492832|ref|XP_003508548.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Cricetulus griseus]
Length = 122
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 28 VLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 87
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 88 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 117
>gi|410920908|ref|XP_003973925.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Takifugu rubripes]
Length = 104
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 11 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 70
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 71 IRGSVVRYVQLPADEVDTQLLQDAARKEA 99
>gi|431921560|gb|ELK18914.1| U6 snRNA-associated Sm-like protein LSm2 [Pteropus alecto]
Length = 127
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 33 LLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 92
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 93 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 122
>gi|193601302|ref|XP_001946996.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Acyrthosiphon pisum]
Length = 94
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 75/90 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHM SVRNC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLVDISVTDPEKYPHMASVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>gi|393907050|gb|EFO18420.2| U6 snRNA-associated Sm-like protein LSm2 [Loa loa]
Length = 99
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D ++YPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQLP D VD LL DA+R+E
Sbjct: 61 FIRGSVVRYVQLPADQVDTQLLQDASRKE 89
>gi|11138539|gb|AAG31434.1|AF204157_1 snRNP core protein SMX5d [Mus musculus]
Length = 119
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 26 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 85
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 86 IRGSVVRYVQLPADEVDTQLLQDAARKEA 114
>gi|345321417|ref|XP_001520666.2| PREDICTED: hypothetical protein LOC100091911 [Ornithorhynchus
anatinus]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 140 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 199
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 200 IRGSVVRYVQLPADEVDTQLLQDAARKEA 228
>gi|410958854|ref|XP_003986029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Felis catus]
Length = 98
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 5 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 64
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 65 IRGSVVRYVQLPADEVDTQLLQDAARKEA 93
>gi|170582506|ref|XP_001896160.1| U6 snRNA-associated Sm-like protein LSm2 [Brugia malayi]
gi|158596693|gb|EDP34995.1| U6 snRNA-associated Sm-like protein LSm2, putative [Brugia
malayi]
Length = 99
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D ++YPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQLP D VD LL DA+R+E
Sbjct: 61 FIRGSVVRYVQLPADQVDTQLLQDASRKE 89
>gi|402591762|gb|EJW85691.1| small nuclear ribonucleoprotein LSM2 [Wuchereria bancrofti]
Length = 99
Score = 140 bits (354), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D ++YPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQLP D VD LL DA+R+E
Sbjct: 61 FIRGSVVRYVQLPADQVDTQLLQDASRKE 89
>gi|344239170|gb|EGV95273.1| U6 snRNA-associated Sm-like protein LSm2 [Cricetulus griseus]
gi|351713156|gb|EHB16075.1| U6 snRNA-associated Sm-like protein LSm2, partial [Heterocephalus
glaber]
gi|440898787|gb|ELR50212.1| U6 snRNA-associated Sm-like protein LSm2, partial [Bos grunniens
mutus]
Length = 94
Score = 140 bits (353), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 1 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 IRGSVVRYVQLPADEVDTQLLQDAARKEA 89
>gi|91077956|ref|XP_967320.1| PREDICTED: similar to smx5 [Tribolium castaneum]
Length = 99
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/92 (70%), Positives = 76/92 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 5 VLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNC 64
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYVQLP D VD LL D+ R+EA
Sbjct: 65 FIRGSVVRYVQLPADEVDTQLLQDSARKEATA 96
>gi|344307226|ref|XP_003422283.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Loxodonta
africana]
Length = 133
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 40 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 99
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 100 IRGSVVRYVQLPADEVDTQLLQDAARKEA 128
>gi|395533886|ref|XP_003768980.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Sarcophilus
harrisii]
Length = 142
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 49 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 108
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 109 IRGSVVRYVQLPADEVDTQLLQDAARKEA 137
>gi|13994221|ref|NP_085100.1| U6 snRNA-associated Sm-like protein LSm2 isoform 1 [Mus musculus]
gi|11138517|gb|AAG31423.1|AF204146_1 snRNP core protein SMX5 [Mus musculus]
gi|11138519|gb|AAG31424.1|AF204147_1 snRNP core protein SMX5 [Mus musculus]
gi|11138521|gb|AAG31425.1|AF204148_1 snRNP core protein SMX5 [Mus musculus]
gi|11138523|gb|AAG31426.1|AF204149_1 snRNP core protein SMX5 [Mus musculus]
gi|11138525|gb|AAG31427.1|AF204150_1 snRNP core protein SMX5 [Mus musculus]
gi|11138527|gb|AAG31428.1|AF204151_1 snRNP core protein SMX5 [Mus musculus]
gi|11138529|gb|AAG31429.1|AF204152_1 snRNP core protein SMX5 [Mus musculus]
gi|16118493|gb|AAL14449.1|AF397035_2 G7b alternative form [Mus musculus]
gi|16118502|gb|AAL14457.1|AF397036_2 G7b alternative form [Mus musculus]
gi|2463649|gb|AAB72038.1| snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gi|3986753|gb|AAC84150.1| smRNP [Mus musculus]
gi|3986775|gb|AAC84171.1| smRNP [Mus musculus]
gi|29436560|gb|AAH49543.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|148694756|gb|EDL26703.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 131
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 38 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 97
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 98 IRGSVVRYVQLPADEVDTQLLQDAARKEA 126
>gi|156365662|ref|XP_001626763.1| predicted protein [Nematostella vectensis]
gi|156213651|gb|EDO34663.1| predicted protein [Nematostella vectensis]
Length = 95
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV VELKNDL++ GTL SVDQ+LN+KL + V D DKYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKEVIVELKNDLSVHGTLDSVDQFLNLKLTDIDVTDPDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP + VD LL DATR+EA
Sbjct: 61 FIRGSVVRYVQLPSEEVDTQLLQDATRKEA 90
>gi|195998846|ref|XP_002109291.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190587415|gb|EDV27457.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 106
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 75/89 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LVG+EV VELKNDL++ G LHSVDQYLNIKL + V D +KYPHM+SV+NC
Sbjct: 1 MLFFSFFKSLVGKEVIVELKNDLSVCGILHSVDQYLNIKLVDISVPDTEKYPHMISVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP + +DV LL DATR+E
Sbjct: 61 FIRGSVVRYVHLPAEEIDVQLLQDATRKE 89
>gi|260064054|ref|NP_001004073.1| LSM2 homolog, U6 small nuclear RNA associated isoform 1 [Rattus
norvegicus]
gi|46237602|emb|CAE83980.1| LSM2 homolog, U6 small nuclear RNA associated [S. cerevisiae]
[Rattus norvegicus]
gi|149028028|gb|EDL83479.1| rCG38360, isoform CRA_e [Rattus norvegicus]
Length = 131
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 38 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 97
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 98 IRGSVVRYVQLPADEVDTQLLQDAARKEA 126
>gi|194223357|ref|XP_001491793.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Equus
caballus]
Length = 114
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 21 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 80
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 81 IRGSVVRYVQLPADEVDTQLLQDAARKEA 109
>gi|334323708|ref|XP_001376243.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Monodelphis domestica]
Length = 167
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 75/89 (84%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 74 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCF 133
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 134 IRGSVVRYVQLPADEVDTQLLQDAARKEA 162
>gi|339521887|gb|AEJ84108.1| U6 snRNA-associated Sm-like protein LSm2 [Capra hircus]
Length = 95
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV P D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVHWPADEVDTQLLQDAARKEA 90
>gi|223995383|ref|XP_002287375.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976491|gb|EED94818.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 97
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 76/88 (86%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LFFS+FK LVG+E+ VELKND+ + GTLHSVDQYLNIKL N VV+QDKYP ++S++NCF
Sbjct: 2 LFFSFFKTLVGKEIAVELKNDVVLTGTLHSVDQYLNIKLTNVSVVNQDKYPQLMSLKNCF 61
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRRE 89
IRGSVVRYVQ+ P+ VD +LL DATR+E
Sbjct: 62 IRGSVVRYVQINPNDVDTELLQDATRKE 89
>gi|405969386|gb|EKC34360.1| U6 snRNA-associated Sm-like protein LSm2, partial [Crassostrea
gigas]
Length = 96
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 74/89 (83%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQ+LNIKL + V D DKYPHMLSV+NCF
Sbjct: 2 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDITVTDPDKYPHMLSVKNCF 61
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D D LL DA R+EA
Sbjct: 62 IRGSVVRYVQLPADECDTQLLQDAARKEA 90
>gi|221127676|ref|XP_002162398.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Hydra
magnipapillata]
Length = 103
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV VELKNDL+I G L SVDQ+LNIKL + V D ++YPHM+SV+NC
Sbjct: 1 MLFYSFFKSLVGKEVIVELKNDLSISGVLDSVDQFLNIKLTDISVTDTERYPHMMSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
F+RGSVVRYVQLPP+ +DV LL DA R+EA
Sbjct: 61 FLRGSVVRYVQLPPEDIDVQLLQDAARKEA 90
>gi|324536502|gb|ADY49465.1| U6 snRNA-associated Sm-like protein LSm2 [Ascaris suum]
Length = 95
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D ++YPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVGDSERYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA+R+E
Sbjct: 61 FIRGSVVRYVQLPADQVDTQLLQDASRKEV 90
>gi|312087894|ref|XP_003145650.1| snRNP core protein SMX5d [Loa loa]
Length = 132
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D ++YPHMLSV+NCF
Sbjct: 35 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNCF 94
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRRE 89
IRGSVVRYVQLP D VD LL DA+R+E
Sbjct: 95 IRGSVVRYVQLPADQVDTQLLQDASRKE 122
>gi|167523208|ref|XP_001745941.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775742|gb|EDQ89365.1| predicted protein [Monosiga brevicollis MX1]
Length = 96
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 78/93 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF S+FK L+G+EVTVELKNDL + G L SVDQ+LNIKL++ +V D ++YPHM++V+NC
Sbjct: 1 MLFSSFFKTLIGKEVTVELKNDLQLNGVLKSVDQFLNIKLDSIQVADIERYPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRY+ LPP+ VD LL DATR+EA GG
Sbjct: 61 FIRGSVVRYIHLPPEHVDKQLLQDATRKEATGG 93
>gi|332019962|gb|EGI60422.1| U6 snRNA-associated Sm-like protein LSm2 [Acromyrmex echinatior]
Length = 96
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 76/92 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK L+G++V VELKNDL+I GTL+SVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 2 LFYSFFKSLIGKDVVVELKNDLSICGTLYSVDQYLNIKLADISVTDSEKYPHMLSVKNCF 61
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLP D VD+ LL +A RREA
Sbjct: 62 IRGSVVRYVQLPVDEVDIHLLTEAARREAMNA 93
>gi|325182501|emb|CCA16956.1| 6 snRNAassociated Smlike protein putative [Albugo laibachii Nc14]
Length = 94
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 75/93 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV VELKND+A+ GTLHSVDQYLN+KL VV+ DKYP +++++NC
Sbjct: 1 MLFYSFFKTLVGKEVAVELKNDVALMGTLHSVDQYLNMKLMGVSVVESDKYPQLMNMKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSV+RYVQ+P VD DLL DA RREA
Sbjct: 61 FIRGSVIRYVQIPAQEVDTDLLQDAARREANAN 93
>gi|383174485|gb|AFG70696.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174486|gb|AFG70697.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174487|gb|AFG70698.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174488|gb|AFG70699.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174489|gb|AFG70700.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174490|gb|AFG70701.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174492|gb|AFG70703.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174493|gb|AFG70704.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
gi|383174494|gb|AFG70705.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
Length = 71
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/70 (92%), Positives = 69/70 (98%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFF YFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV+QDKYPHMLSV+NC
Sbjct: 1 MLFFLYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYV 70
FIRGSVVRYV
Sbjct: 61 FIRGSVVRYV 70
>gi|307181671|gb|EFN69174.1| U6 snRNA-associated Sm-like protein LSm2 [Camponotus floridanus]
Length = 95
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 76/92 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK L+G++V VELKNDL+I GTL+SVDQYLNIKL + V D +KYPHMLSV+NCF
Sbjct: 1 LFYSFFKSLIGKDVVVELKNDLSICGTLYSVDQYLNIKLADISVTDSEKYPHMLSVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRGSVVRYVQLP D VD+ LL +A RREA
Sbjct: 61 IRGSVVRYVQLPVDEVDIHLLTEAARREAMNA 92
>gi|2113818|emb|CAB05859.1| AmphiBrf43 [Branchiostoma floridae]
Length = 91
Score = 137 bits (345), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQ+LNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQL D D LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLSADECDTQLLQDAARKEA 90
>gi|452987425|gb|EME87180.1| hypothetical protein MYCFIDRAFT_212793 [Pseudocercospora fijiensis
CIRAD86]
Length = 1055
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 65/91 (71%), Positives = 73/91 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVTVELKND++IRGTL SVDQYLNIKL++ VVD+ YPH+ SV+N
Sbjct: 936 MLFFSFFKTLVNHEVTVELKNDISIRGTLKSVDQYLNIKLDDISVVDEMSYPHLSSVKNV 995
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP VD LL DATRRE R
Sbjct: 996 FIRGSVVRYVHLPAAAVDTPLLEDATRREQR 1026
>gi|383174491|gb|AFG70702.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
Length = 71
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/70 (91%), Positives = 69/70 (98%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFF YFK+LVG+EVTVELKNDLAI+GTLHSVDQYLNIKLENTRVV+QDKYPHMLSV+NC
Sbjct: 1 MLFFLYFKELVGKEVTVELKNDLAIKGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYV 70
FIRGSVVRYV
Sbjct: 61 FIRGSVVRYV 70
>gi|171684599|ref|XP_001907241.1| hypothetical protein [Podospora anserina S mat+]
gi|170942260|emb|CAP67912.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 75/90 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQYLNIKL+N +VVD+ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIRIRGVLKSVDQYLNIKLDNIQVVDELKYPHLSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD+DLL DATRREA
Sbjct: 61 FIRGSVVRYVHLPSQSVDIDLLEDATRREA 90
>gi|398410479|ref|XP_003856589.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici
IPO323]
gi|339476474|gb|EGP91565.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici
IPO323]
Length = 100
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVTVELKND++IRGTL SVDQ+LNIKL+N VVD+ K+PH+ SV+N
Sbjct: 1 MLFFSFFKTLVNHEVTVELKNDISIRGTLKSVDQFLNIKLDNISVVDEVKFPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPAAAVDTPLLEDATRREA 90
>gi|121543877|gb|ABM55603.1| LSM2-like protein [Maconellicoccus hirsutus]
Length = 96
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 74/91 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+EV +ELKNDL++ GTL SVDQYLN+KL+ V D +K+PHMLSV NC
Sbjct: 1 MLFYSFFKSLVGKEVIIELKNDLSMCGTLSSVDQYLNLKLKEVTVNDTEKHPHMLSVSNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYVQLP D VD LL DATR EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDATRNEAE 91
>gi|443704446|gb|ELU01508.1| hypothetical protein CAPTEDRAFT_111414, partial [Capitella
teleta]
Length = 95
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 73/89 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+++ VELKNDL+I GTLHSVDQ+LNIKL + V D DKYPHMLSV+ CF
Sbjct: 1 LFYSFFKSLVGKDLVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPDKYPHMLSVKTCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP D D LL DA R+EA
Sbjct: 61 IRGSVVRYVQLPADECDTQLLQDAARKEA 89
>gi|326428074|gb|EGD73644.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 112
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF S+FK LVG+ V VELKNDL+I+GTL SVDQ+LNIKL++ V + DKY HM+SV+NC
Sbjct: 18 MLFTSFFKTLVGKTVVVELKNDLSIQGTLTSVDQFLNIKLDDITVGNVDKYAHMVSVKNC 77
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSV+RY+QLPP+ VD LL DATRREA
Sbjct: 78 FIRGSVIRYIQLPPEHVDTQLLQDATRREA 107
>gi|361067211|gb|AEW07917.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
Length = 71
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/70 (91%), Positives = 68/70 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFF YFK+LVG+EVTV LKNDLAIRGTLHSVDQYLNIKLENTRVV+QDKYPHMLSV+NC
Sbjct: 1 MLFFLYFKELVGKEVTVALKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60
Query: 61 FIRGSVVRYV 70
FIRGSVVRYV
Sbjct: 61 FIRGSVVRYV 70
>gi|345569040|gb|EGX51909.1| hypothetical protein AOL_s00043g643 [Arthrobotrys oligospora ATCC
24927]
Length = 144
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 75/92 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVT+ELKNDL+IRGTL SVDQ+LNIKL+ +VVD+ KYPH+ +V+N
Sbjct: 47 MLFFSFFKTLVDHEVTIELKNDLSIRGTLKSVDQFLNIKLDEIQVVDEVKYPHLSAVKNV 106
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYV LP + VD LL DATRREA
Sbjct: 107 FIRGSVVRYVHLPANAVDTALLEDATRREAAA 138
>gi|328849372|gb|EGF98554.1| hypothetical protein MELLADRAFT_113458 [Melampsora larici-populina
98AG31]
Length = 161
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 75/87 (86%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
F + FK L G+EVT+ELKNDLAI+GTL SVDQ+LN+KLEN +V+DQ++YPHM++V+NCF
Sbjct: 20 FFQNVFKTLTGQEVTIELKNDLAIQGTLASVDQFLNLKLENIKVLDQERYPHMMAVKNCF 79
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRR 88
IRGSVVRYVQ+P + VD LL DATR+
Sbjct: 80 IRGSVVRYVQIPKNAVDTQLLEDATRK 106
>gi|328873860|gb|EGG22226.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 99
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 75/91 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S++K LVG+E+TVELKNDLAI G L SVDQ+LNIKL + RV ++ KYP+MLSV+NC
Sbjct: 1 MLFYSFYKTLVGKEITVELKNDLAITGYLQSVDQFLNIKLRDIRVEEEQKYPYMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP D VDVD L D R EAR
Sbjct: 61 FIRGSVVRYVHLPADDVDVDTLQDHARLEAR 91
>gi|66812912|ref|XP_640635.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74855297|sp|Q54TF6.1|LSM2_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm2
gi|60468648|gb|EAL66651.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 117
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 78/91 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP + VDV+ L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
>gi|449297262|gb|EMC93280.1| hypothetical protein BAUCODRAFT_75741 [Baudoinia compniacensis UAMH
10762]
Length = 1058
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND++IRGTL SVDQYLNIKL++ VV++ KYPH+ SV+N
Sbjct: 926 MLFFSFFKTLVNQEVTVELKNDISIRGTLKSVDQYLNIKLDDISVVEEMKYPHLSSVKNV 985
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR-EARG 92
FIRGSVVRYV LP VD LL DATRR EA G
Sbjct: 986 FIRGSVVRYVHLPAAAVDTPLLEDATRRGEATG 1018
>gi|392921511|ref|NP_001256511.1| Protein GUT-2, isoform a [Caenorhabditis elegans]
gi|58081790|emb|CAB03328.3| Protein GUT-2, isoform a [Caenorhabditis elegans]
Length = 97
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/89 (69%), Positives = 75/89 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LVG++V VELKNDL+I GTLHSVDQYLN+KL + V D +++PHM+SV+NC
Sbjct: 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQLP D VD LL D+ R+E
Sbjct: 61 FIRGSVVRYVQLPSDQVDTQLLADSCRKE 89
>gi|281210502|gb|EFA84668.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 77/91 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ RV ++DKYP+MLSV+NC
Sbjct: 1 MLFYSFYKTLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDVRVEEEDKYPYMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP VDV+ L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPASEVDVETLQDHSRLEAR 91
>gi|308504419|ref|XP_003114393.1| CRE-GUT-2 protein [Caenorhabditis remanei]
gi|308261778|gb|EFP05731.1| CRE-GUT-2 protein [Caenorhabditis remanei]
Length = 97
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 75/89 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LVG++V +ELKNDL+I GTLHSVDQYLN+KL + V D +++PHM+SV+NC
Sbjct: 1 MLFFSFFKSLVGKDVVIELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQLP D VD LL D+ R+E
Sbjct: 61 FIRGSVVRYVQLPSDQVDTQLLADSCRKE 89
>gi|383174495|gb|AFG70706.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
Length = 71
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 68/70 (97%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFF YFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKL+NTRVV+QDKYPHMLS +NC
Sbjct: 1 MLFFLYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLDNTRVVEQDKYPHMLSAKNC 60
Query: 61 FIRGSVVRYV 70
FIRGSVVRYV
Sbjct: 61 FIRGSVVRYV 70
>gi|116192515|ref|XP_001222070.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88181888|gb|EAQ89356.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 98
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 75/90 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQYLNIKL+N +V+++ KYPHM +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGVLKSVDQYLNIKLDNIQVLEEIKYPHMSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP + VDV LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPANAVDVPLLEDATRREA 90
>gi|453089853|gb|EMF17893.1| U6 snRNA-associated Sm-like protein LSm2 [Mycosphaerella
populorum SO2202]
Length = 100
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV E+TVELKND++IRGTL SVDQYLNIKL++ VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVNHEITVELKNDISIRGTLKSVDQYLNIKLDDISVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPAAAVDTPLLEDATRREA 90
>gi|452848080|gb|EME50012.1| hypothetical protein DOTSEDRAFT_68763 [Dothistroma septosporum
NZE10]
Length = 101
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVTVELKND++IRGTL SVDQYLNIKL++ VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVNHEVTVELKNDISIRGTLKSVDQYLNIKLDDVSVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPAVAVDTPLLEDATRREA 90
>gi|367020836|ref|XP_003659703.1| hypothetical protein MYCTH_2137175 [Myceliophthora thermophila
ATCC 42464]
gi|347006970|gb|AEO54458.1| hypothetical protein MYCTH_2137175 [Myceliophthora thermophila
ATCC 42464]
Length = 98
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQYLNIKL+N +V+++ KYPHM +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGVLKSVDQYLNIKLDNIQVLEEIKYPHMSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPASAVDVPLLEDATRREA 90
>gi|50555508|ref|XP_505162.1| YALI0F08459p [Yarrowia lipolytica]
gi|49651032|emb|CAG77969.1| YALI0F08459p [Yarrowia lipolytica CLIB122]
Length = 99
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS FK LV E+TVELKNDL IRG L SVDQ++NIKLEN V++DK+PH+ +VR+
Sbjct: 1 MLFFSLFKTLVNHEITVELKNDLQIRGILKSVDQFMNIKLENVTTVEEDKFPHLTAVRDL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LPP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPPGAVDTTLLEDATRREA 90
>gi|346979373|gb|EGY22825.1| DOM34-interacting protein [Verticillium dahliae VdLs.17]
Length = 1081
Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/89 (71%), Positives = 73/89 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVT+ELKND+ IRGTL SVDQYLNIKLE+ VV++ KYPH+ SV+N
Sbjct: 984 MLFFSFFKTLIDHEVTIELKNDIQIRGTLKSVDQYLNIKLEDISVVEELKYPHLSSVKNV 1043
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VDV LL DATRRE
Sbjct: 1044 FIRGSVVRYVHLPAASVDVPLLEDATRRE 1072
>gi|346324359|gb|EGX93956.1| small nuclear ribonucleoprotein LSM2 [Cordyceps militaris CM01]
Length = 98
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ +EVTVELKND+ +RGTL SVDQYLNIKL++ V+++ KYPHM SV+N
Sbjct: 1 MLFFSFFKTLIDQEVTVELKNDIQLRGTLKSVDQYLNIKLDDISVIEELKYPHMSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPAASVDTQLLEDATRREA 90
>gi|330846289|ref|XP_003294973.1| hypothetical protein DICPUDRAFT_85411 [Dictyostelium purpureum]
gi|325074445|gb|EGC28500.1| hypothetical protein DICPUDRAFT_85411 [Dictyostelium purpureum]
Length = 114
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 78/91 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V +++KYP+M+SV+NC
Sbjct: 1 MLFFSFYKTLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEEKYPYMISVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP D VDV+ L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPADDVDVETLQDHSRLEAR 91
>gi|336464042|gb|EGO52282.1| hypothetical protein NEUTE1DRAFT_118711 [Neurospora tetrasperma
FGSC 2508]
gi|380096066|emb|CCC06113.1| small nuclear ribonucleoprotein LSM2 [Sordaria macrospora k-hell]
Length = 100
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 75/90 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQ+LNIKL+N +VV++ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGVLKSVDQFLNIKLDNIQVVEELKYPHLSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP + VD+ LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPQESVDIQLLEDATRREA 90
>gi|299470069|emb|CBN79246.1| Sm-like protein LSm2 [Ectocarpus siliculosus]
Length = 94
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 77/93 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG+E+ VELKND+A+ GTLHSVDQYLN+KL + +VVD ++YP + +++NC
Sbjct: 1 MLFYSFFKTLVGKEIAVELKNDVALTGTLHSVDQYLNVKLTDVQVVDAERYPQLGAIKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRY+Q+P VD +LL DA R+E+ G
Sbjct: 61 FIRGSVVRYIQIPSADVDTELLQDACRKESAQG 93
>gi|302414568|ref|XP_003005116.1| DOM34-interacting protein [Verticillium albo-atrum VaMs.102]
gi|261356185|gb|EEY18613.1| DOM34-interacting protein [Verticillium albo-atrum VaMs.102]
Length = 977
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 64/89 (71%), Positives = 73/89 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVT+ELKND+ IRGTL SVDQYLNIKLE+ VV++ KYPH+ SV+N
Sbjct: 880 MLFFSFFKTLIDHEVTIELKNDIQIRGTLKSVDQYLNIKLEDISVVEELKYPHLSSVKNV 939
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VDV LL DATRRE
Sbjct: 940 FIRGSVVRYVHLPAASVDVPLLEDATRRE 968
>gi|367042876|ref|XP_003651818.1| hypothetical protein THITE_2112526 [Thielavia terrestris NRRL
8126]
gi|346999080|gb|AEO65482.1| hypothetical protein THITE_2112526 [Thielavia terrestris NRRL
8126]
Length = 98
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQYLNIKL+N +V+++ KYPHM +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGVLKSVDQYLNIKLDNIQVMEELKYPHMSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD+ LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPAAAVDIPLLEDATRREA 90
>gi|388582559|gb|EIM22863.1| U6 snRNA-associated Sm-like protein LSm2 [Wallemia sebi CBS
633.66]
Length = 93
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS FK L + VTVELKNDL + GTL SVDQ+LNIKL+N +V+D+ +YPHM++++N
Sbjct: 1 MLFFSVFKTLTEQTVTVELKNDLCLIGTLKSVDQFLNIKLDNVKVLDEQRYPHMMAIKNT 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP + +D LL DATRREA
Sbjct: 61 FIRGSVVRYVQLPSESIDTQLLQDATRREA 90
>gi|383174496|gb|AFG70707.1| Pinus taeda anonymous locus 0_14454_01 genomic sequence
Length = 71
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/70 (90%), Positives = 67/70 (95%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFF YFK+LVG+EV VELKNDLAIRGTLHSVDQYLNIKLENTRVV+QDKYPHMLSV+ C
Sbjct: 1 MLFFLYFKELVGKEVIVELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKIC 60
Query: 61 FIRGSVVRYV 70
FIRGSVVRYV
Sbjct: 61 FIRGSVVRYV 70
>gi|400602727|gb|EJP70329.1| DOM34-interacting protein [Beauveria bassiana ARSEF 2860]
Length = 98
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ +EVTVELKND+ +RGTL SVDQYLNIKL++ V+++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIEQEVTVELKNDIQLRGTLKSVDQYLNIKLDDISVMEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPASSVDTQLLEDATRREA 90
>gi|392569319|gb|EIW62492.1| U6 snRNA-associated Sm-like protein LSm2 [Trametes versicolor
FP-101664 SS1]
Length = 96
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 75/92 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L + VTVELKNDL+I GTL SVDQ+LNI+L+N +V+D+ ++PHM++V+NC
Sbjct: 1 MLIFSVFKTLTDQRVTVELKNDLSITGTLKSVDQFLNIRLDNIKVLDEARHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYVQLP + VD LL DATRREA
Sbjct: 61 FIRGSVVRYVQLPAEHVDTQLLEDATRREAAA 92
>gi|343424875|emb|CBQ68413.1| related to LSM2-Sm-like (Lsm) protein [Sporisorium reilianum
SRZ2]
Length = 96
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L G++VT+ELKNDLAI+GTL SVDQ+LN K++N RV+D+ K+PHM++V++
Sbjct: 1 MLIFSAFKTLTGQQVTIELKNDLAIQGTLKSVDQFLNFKIDNIRVLDEAKHPHMMAVKSA 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV +P VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHIPAAAVDTQLLEDATRREA 90
>gi|341038669|gb|EGS23661.1| hypothetical protein CTHT_0003570 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 98
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 74/92 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ +RG L SVDQYLNIKL+N +V+++ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQLRGILKSVDQYLNIKLDNVQVMEELKYPHLSAVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGSVVRYV LP VDV LL DA RREA+
Sbjct: 61 FIRGSVVRYVHLPASAVDVQLLEDAARREAQN 92
>gi|378733177|gb|EHY59636.1| U6 snRNA-associated Sm-like protein LSm2 [Exophiala dermatitidis
NIH/UT8656]
Length = 98
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VTVELKND++IRGTL SVDQYLNIKL++ V+D+ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTQQTVTVELKNDISIRGTLKSVDQYLNIKLDDIVVLDELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LPPD VD LL DA RREA
Sbjct: 61 FIRGSVVRYVHLPPDKVDRGLLEDACRREA 90
>gi|440795747|gb|ELR16863.1| snRNP core protein SMX5d, putative [Acanthamoeba castellanii str.
Neff]
Length = 113
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 14/105 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
LF+S+FK LVG+EV VELKNDLAIRG LHSVDQYLNIKL + V+D++KYPH+LSVRNC
Sbjct: 2 WLFYSFFKSLVGKEVVVELKNDLAIRGVLHSVDQYLNIKLHDIHVLDEEKYPHLLSVRNC 61
Query: 61 FIRGSVVRYVQLPPDG--------------VDVDLLHDATRREAR 91
FIRGSV+RYVQ+P V +LL D+ R EAR
Sbjct: 62 FIRGSVIRYVQIPAKAPSPSARCTATLFCEVVTELLQDSARIEAR 106
>gi|391342618|ref|XP_003745613.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Metaseiulus occidentalis]
Length = 91
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 75/91 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKND++I GTLHSVDQYLNIKL + V D +K+PH+ SV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDISICGTLHSVDQYLNIKLVDISVTDPEKHPHIQSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRY+QLP + VD LL DA R+E +
Sbjct: 61 FIRGSVVRYIQLPHEDVDTQLLQDAVRKEMK 91
>gi|60687558|gb|AAX30112.1| LSM2 homolog, U6 small nuclear RNA associated [Schistosoma
japonicum]
gi|226486678|emb|CAX74416.1| U6 snRNA-associated Sm-like protein LSm2 [Schistosoma japonicum]
gi|226486680|emb|CAX74417.1| U6 snRNA-associated Sm-like protein LSm2 [Schistosoma japonicum]
Length = 98
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LVG++V +ELKNDL I GTLHSVDQY N KL + V D +K+PHMLSV+NC
Sbjct: 1 MLFFSFFKTLVGKDVLIELKNDLCICGTLHSVDQYHNFKLTDISVTDPEKHPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGS+VRYVQLP D D L +A+R+EA G
Sbjct: 61 FIRGSIVRYVQLPADECDTIELQNASRKEATVG 93
>gi|310800349|gb|EFQ35242.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 98
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 71/89 (79%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQYLNIKLE VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGVLKSVDQYLNIKLEEISVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VDV LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPAGSVDVPLLEDATRRE 89
>gi|380496303|emb|CCF31809.1| U6 snRNA-associated Sm-like protein LSm2 [Colletotrichum
higginsianum]
Length = 98
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 71/89 (79%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQYLNIKLE VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGILKSVDQYLNIKLEEISVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VDV LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPAGSVDVPLLEDATRRE 89
>gi|388855778|emb|CCF50562.1| related to LSM2-Sm-like (Lsm) protein [Ustilago hordei]
Length = 96
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L G++VT+ELKNDLAI+GTL SVDQ+LN K++N RV+++ K+PHM++V++
Sbjct: 1 MLIFSAFKTLTGQQVTIELKNDLAIQGTLKSVDQFLNFKVDNIRVLNEAKHPHMMAVKSA 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV +P VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHIPAAAVDTQLLEDATRREA 90
>gi|320166739|gb|EFW43638.1| snRNP core protein SMX5 [Capsaspora owczarzaki ATCC 30864]
Length = 115
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/89 (68%), Positives = 73/89 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LV +EV VELKNDL I GTLHSVDQ+LNIKL + V + +KYPHM+SV+ CF
Sbjct: 20 LFYSFFKTLVDKEVVVELKNDLCITGTLHSVDQFLNIKLLDISVAEPEKYPHMVSVKTCF 79
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYV+L P VD +LL DA+RREA
Sbjct: 80 IRGSVVRYVRLNPAFVDTELLQDASRREA 108
>gi|328771463|gb|EGF81503.1| hypothetical protein BATDEDRAFT_10632 [Batrachochytrium
dendrobatidis JAM81]
Length = 111
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 74/89 (83%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV +ELKNDLAI G L SVDQ+LN KL+N RV D++++PHM+SV+NCF
Sbjct: 15 LFYSFFKTLVGQEVIIELKNDLAIVGKLVSVDQFLNFKLDNIRVEDEERFPHMMSVKNCF 74
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYV++P VD LL DA R+EA
Sbjct: 75 IRGSVVRYVRIPASKVDTALLQDAARKEA 103
>gi|440640678|gb|ELR10597.1| hypothetical protein GMDG_04869 [Geomyces destructans 20631-21]
Length = 100
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 73/89 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ IRGTL SVDQYLNIKL++ VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIQIRGTLKSVDQYLNIKLDDISVVEEIKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VD LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPGAVVDTQLLEDATRRE 89
>gi|169623821|ref|XP_001805317.1| hypothetical protein SNOG_15154 [Phaeosphaeria nodorum SN15]
gi|396472521|ref|XP_003839139.1| similar to U6 snRNA-associated Sm-like protein LSm2
[Leptosphaeria maculans JN3]
gi|111056259|gb|EAT77379.1| hypothetical protein SNOG_15154 [Phaeosphaeria nodorum SN15]
gi|312215708|emb|CBX95660.1| similar to U6 snRNA-associated Sm-like protein LSm2
[Leptosphaeria maculans JN3]
Length = 98
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 71/93 (76%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV E+TVELKN++ IRGTL SVDQYLNIKL+N VD+ ++PH+ S ++
Sbjct: 1 MLFFSFFKTLVEHEITVELKNEVQIRGTLKSVDQYLNIKLDNAEAVDEMRWPHLCSTKDM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPSGAVDTALLEDATRREAEAA 93
>gi|296805700|ref|XP_002843674.1| small nuclear ribonucleoprotein LSM2 [Arthroderma otae CBS
113480]
gi|238844976|gb|EEQ34638.1| small nuclear ribonucleoprotein LSM2 [Arthroderma otae CBS
113480]
Length = 98
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L R VT+ELKND+ IRGTL SVDQYLNIKL++ V+D ++YPH+ SVRN
Sbjct: 1 MLFFSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLNEYPHLSSVRNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYIVLPQSEVDTGLLEDATRREA 90
>gi|407924656|gb|EKG17689.1| hypothetical protein MPH_05138 [Macrophomina phaseolina MS6]
Length = 100
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/89 (70%), Positives = 73/89 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVTVELKND++IRGTL SVDQ+LNIKL++ VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDHEVTVELKNDISIRGTLKSVDQFLNIKLDDISVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VD LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPGAAVDTALLEDATRRE 89
>gi|358057850|dbj|GAA96352.1| hypothetical protein E5Q_03018 [Mixia osmundae IAM 14324]
Length = 96
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 74/90 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML +S FK L + VTVELKNDLAIRGTL SVDQ+LNIKL+N V+D +++PHM++VRNC
Sbjct: 1 MLIYSVFKTLTEQVVTVELKNDLAIRGTLKSVDQFLNIKLDNISVLDPERHPHMMTVRNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
F+RGSV+RYV +P + ++ LL DATRREA
Sbjct: 61 FVRGSVIRYVHIPKNAIETPLLEDATRREA 90
>gi|189204055|ref|XP_001938363.1| hypothetical protein PTRG_08031 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923085|ref|XP_003300092.1| hypothetical protein PTT_11246 [Pyrenophora teres f. teres 0-1]
gi|187985462|gb|EDU50950.1| hypothetical protein PTRG_08031 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325945|gb|EFQ91825.1| hypothetical protein PTT_11246 [Pyrenophora teres f. teres 0-1]
gi|451849910|gb|EMD63213.1| hypothetical protein COCSADRAFT_338961 [Cochliobolus sativus
ND90Pr]
gi|452000740|gb|EMD93200.1| hypothetical protein COCHEDRAFT_1211939 [Cochliobolus
heterostrophus C5]
gi|452001734|gb|EMD94193.1| hypothetical protein COCHEDRAFT_1153497 [Cochliobolus
heterostrophus C5]
Length = 98
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 71/93 (76%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV E+TVELKN++ IRGTL SVDQYLNIKL+N VD+ ++PH+ S ++
Sbjct: 1 MLFFSFFKTLVEHEITVELKNEVQIRGTLKSVDQYLNIKLDNAEAVDELRWPHLCSTKDM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVHLPSGAVDTALLEDATRREAEAA 93
>gi|393217755|gb|EJD03244.1| U6 snRNA-associated Sm-like protein LSm2 [Fomitiporia
mediterranea MF3/22]
Length = 96
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L + VTVELKNDL+I G L SVDQ+LNI+L+N +V+D+ +PHM++V+NC
Sbjct: 1 MLIFSLFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVLDEANHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP VD LL DATRREA
Sbjct: 61 FIRGSVVRYVQLPAQHVDTQLLEDATRREA 90
>gi|290999355|ref|XP_002682245.1| predicted protein [Naegleria gruberi]
gi|284095872|gb|EFC49501.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 74/89 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LFFS+FK LV +EV VELKND+++RGTLHSVDQYLN+KL N +V D++KYP++ ++NC
Sbjct: 2 VLFFSFFKTLVDKEVIVELKNDVSLRGTLHSVDQYLNVKLNNVQVEDKEKYPYLCCIKNC 61
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGS VRY+QLP VD + L +ATR+E
Sbjct: 62 FIRGSTVRYIQLPAADVDTEALQNATRKE 90
>gi|350296125|gb|EGZ77102.1| U6 snRNA-associated Sm-like protein LSm2 [Neurospora tetrasperma
FGSC 2509]
Length = 106
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 73/88 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ IRG L SVDQ+LNIKL+N +VV++ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGVLKSVDQFLNIKLDNIQVVEELKYPHLSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYV LP + VD+ LL DATRR
Sbjct: 61 FIRGSVVRYVHLPQESVDIQLLEDATRR 88
>gi|119623931|gb|EAX03526.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 113
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 69/83 (83%)
Query: 8 KDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVV 67
K LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVV
Sbjct: 26 KSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVV 85
Query: 68 RYVQLPPDGVDVDLLHDATRREA 90
RYVQLP D VD LL DA R+EA
Sbjct: 86 RYVQLPADEVDTQLLQDAARKEA 108
>gi|348672729|gb|EGZ12549.1| hypothetical protein PHYSODRAFT_317573 [Phytophthora sojae]
Length = 99
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 73/92 (79%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+LF+S+FK LVG+EV VELKND+A+ G L SVDQYLNIKL N VV+ DK+P +++++NC
Sbjct: 4 LLFYSFFKTLVGKEVAVELKNDVALMGVLDSVDQYLNIKLLNVSVVEGDKFPQLMNMKNC 63
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
FIRGS +RYVQ+P VD +LL DA RREA
Sbjct: 64 FIRGSSIRYVQIPAGEVDTELLQDAARREATA 95
>gi|301099937|ref|XP_002899059.1| 6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104371|gb|EEY62423.1| 6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 134
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M F+S+FK LVG+EV VELKND+A+ G L SVDQYLNIKL N VV+ DK+P +++++NC
Sbjct: 39 MFFYSFFKTLVGKEVAVELKNDVALMGVLDSVDQYLNIKLLNVSVVEGDKFPQLMNMKNC 98
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS +RYVQ+P VD +LL DA RREA
Sbjct: 99 FIRGSSIRYVQIPAGEVDTELLQDAARREA 128
>gi|154308998|ref|XP_001553834.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 157
Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 73/90 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVTVELKND+ I+G L SVDQYLNIKL++ +VV++ KYPH+ SV+N
Sbjct: 60 MLFFSFFKTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 119
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP +D LL DATRREA
Sbjct: 120 FIRGSVVRYVHLPGGVIDTALLEDATRREA 149
>gi|402223919|gb|EJU03982.1| U6 snRNA-associated Sm-like protein LSm2 [Dacryopinax sp. DJM-731
SS1]
Length = 96
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 70/89 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L + VTVELKNDL I GTL SVDQ+LNI+L+ VVD +K+PHM++V+NC
Sbjct: 1 MLIFSVFKTLTDQIVTVELKNDLCITGTLKSVDQFLNIRLDKISVVDPEKHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYVQ+P VD LL DATRRE
Sbjct: 61 FIRGSVVRYVQIPATAVDTQLLEDATRRE 89
>gi|301093933|ref|XP_002997811.1| U6 snRNA-associated Sm-like protein LSm2, putative [Phytophthora
infestans T30-4]
gi|262109897|gb|EEY67949.1| U6 snRNA-associated Sm-like protein LSm2, putative [Phytophthora
infestans T30-4]
Length = 95
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 72/89 (80%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG+EV VELKND+A+ G L SVDQYLNIKL N VV+ DK+P +++++NCF
Sbjct: 1 LFYSFFKTLVGKEVAVELKNDVALMGVLDSVDQYLNIKLLNVSVVEGDKFPQLMNMKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGS +RYVQ+P VD +LL DA RREA
Sbjct: 61 IRGSSIRYVQIPAGEVDTELLQDAARREA 89
>gi|315046638|ref|XP_003172694.1| small nuclear ribonucleoprotein LSM2 [Arthroderma gypseum CBS
118893]
gi|311343080|gb|EFR02283.1| small nuclear ribonucleoprotein LSM2 [Arthroderma gypseum CBS
118893]
Length = 98
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L R VT+ELKND+ IRGTL SVDQYLNIKL++ V+D ++YPH+ SV N
Sbjct: 1 MLFFSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLNEYPHLSSVSNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYIVLPQSEVDTGLLEDATRREA 90
>gi|358391574|gb|EHK40978.1| hypothetical protein TRIATDRAFT_135662 [Trichoderma atroviride
IMI 206040]
Length = 98
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ ++G L SVDQYLNIKL++ +VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQLKGMLKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VD LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPAASVDTQLLEDATRRE 89
>gi|340520773|gb|EGR51009.1| predicted protein [Trichoderma reesei QM6a]
gi|358378070|gb|EHK15753.1| hypothetical protein TRIVIDRAFT_214945 [Trichoderma virens
Gv29-8]
Length = 98
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ ++G L SVDQYLNIKL++ +VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQLKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VD LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPAASVDTQLLEDATRRE 89
>gi|403414133|emb|CCM00833.1| predicted protein [Fibroporia radiculosa]
Length = 634
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/89 (65%), Positives = 73/89 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L ++VTVELKNDL+I G L SVDQ+LNI+L++ V+D+ ++PHM++V+NCF
Sbjct: 540 LIFSVFKTLTDQQVTVELKNDLSITGVLKSVDQFLNIRLDSITVLDEARHPHMMAVKNCF 599
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP + VD LL DATRREA
Sbjct: 600 IRGSVVRYVQLPAEHVDTQLLEDATRREA 628
>gi|336371214|gb|EGN99553.1| hypothetical protein SERLA73DRAFT_179636 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383976|gb|EGO25124.1| hypothetical protein SERLADRAFT_464832 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L + VTVELKNDL I G L SVDQ+LNI+L+ +V+D+ ++PHM++++NC
Sbjct: 1 MLIFSVFKTLTDQRVTVELKNDLCITGVLKSVDQFLNIRLDAIKVLDEARHPHMMAIKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP + VD LL DATRREA
Sbjct: 61 FIRGSVVRYVQLPAEHVDTQLLEDATRREA 90
>gi|389642189|ref|XP_003718727.1| U6 snRNA-associated Sm-like protein LSm2 [Magnaporthe oryzae
70-15]
gi|351641280|gb|EHA49143.1| U6 snRNA-associated Sm-like protein LSm2 [Magnaporthe oryzae
70-15]
gi|440468055|gb|ELQ37238.1| snRNA-associated protein [Magnaporthe oryzae Y34]
gi|440489015|gb|ELQ68696.1| snRNA-associated protein [Magnaporthe oryzae P131]
Length = 97
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ E+TVELKN + IRGTL SVDQYLN+KL++ VV+ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDVEITVELKNSIQIRGTLKSVDQYLNLKLDDISVVEDIKYPHLSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYIHLPASHVDVPLLEDATRREA 90
>gi|327305527|ref|XP_003237455.1| small nuclear ribonucleoprotein LSM2 [Trichophyton rubrum CBS
118892]
gi|326460453|gb|EGD85906.1| small nuclear ribonucleoprotein LSM2 [Trichophyton rubrum CBS
118892]
gi|326476056|gb|EGE00066.1| small nuclear ribonucleoprotein LSM2 [Trichophyton tonsurans CBS
112818]
gi|326484026|gb|EGE08036.1| small nuclear ribonucleoprotein LSM2 [Trichophyton equinum CBS
127.97]
Length = 98
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L R VT+ELKND+ IRGTL SVDQYLN+KL++ V+D ++YPH+ SV N
Sbjct: 1 MLFFSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNVKLDDIEVLDLNEYPHLSSVSNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP VD LL DATRREA
Sbjct: 61 FIRGSVVRYIVLPQSEVDTGLLEDATRREA 90
>gi|389739973|gb|EIM81165.1| U6 snRNA-associated Sm-like protein LSm2 [Stereum hirsutum
FP-91666 SS1]
Length = 96
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L + VTVELKNDL+I GTL SVDQ+LNI+L+ V+D ++PHM++V+NC
Sbjct: 1 MLIFSVFKTLTDQRVTVELKNDLSITGTLKSVDQFLNIRLDQIEVMDPARHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP + VD LL DATRRE+
Sbjct: 61 FIRGSVVRYVQLPSEHVDTQLLEDATRRES 90
>gi|134109889|ref|XP_776494.1| hypothetical protein CNBC5480 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259170|gb|EAL21847.1| hypothetical protein CNBC5480 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 95
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 74/93 (79%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS+FK L + +TVELKNDL+I GTL SVDQ+LNI+L+N V D +++PHM++V+NC
Sbjct: 1 MLIFSFFKTLTDQVITVELKNDLSITGTLKSVDQFLNIRLDNISVEDPERHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGSVVRYV++ VD LL DATRREA+ G
Sbjct: 61 FIRGSVVRYVRMAARSVDTTLLEDATRREAKEG 93
>gi|237843693|ref|XP_002371144.1| u6 snRNA-associated sm-like protein Lsm2, putative [Toxoplasma
gondii ME49]
gi|211968808|gb|EEB04004.1| u6 snRNA-associated sm-like protein Lsm2, putative [Toxoplasma
gondii ME49]
gi|221481638|gb|EEE20020.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 101
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 2/95 (2%)
Query: 1 MLFFSYFKDLVGRE--VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
M+FFS+F+ LV R+ + VELKNDL I G+LHSVDQ+LNIKL N V D ++ PH+LSV+
Sbjct: 1 MMFFSFFQTLVERQTQIMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPERCPHLLSVK 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
NCFIRGS VRYV LPP VDV L D RRE+ G
Sbjct: 61 NCFIRGSAVRYVHLPPSAVDVSQLQDMCRRESAGS 95
>gi|449541112|gb|EMD32098.1| hypothetical protein CERSUDRAFT_119079 [Ceriporiopsis
subvermispora B]
Length = 130
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 73/88 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L ++VTVELKNDL+I G L SVDQ+LNI+L++ +V+D+ ++PHM++V+NC
Sbjct: 1 MLIFSVFKTLTDQQVTVELKNDLSITGVLKSVDQFLNIRLDSIKVLDEARHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYVQLP + VD LL DATRR
Sbjct: 61 FIRGSVVRYVQLPAEHVDTQLLEDATRR 88
>gi|303311569|ref|XP_003065796.1| U6 snRNA-associated Sm-like protein LSm2 , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240105458|gb|EER23651.1| U6 snRNA-associated Sm-like protein LSm2 , putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 98
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L V +ELKND+ IRG L SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP + VD LL DATRREA
Sbjct: 61 FIRGSVVRYIVLPQEAVDRALLEDATRREA 90
>gi|444316980|ref|XP_004179147.1| hypothetical protein TBLA_0B08120 [Tetrapisispora blattae CBS
6284]
gi|387512187|emb|CCH59628.1| hypothetical protein TBLA_0B08120 [Tetrapisispora blattae CBS
6284]
Length = 95
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ ++GTL SVDQ+LN+KL+N D DKYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNDTDKYPHLSSVRNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DA RREA
Sbjct: 61 FIRGSTVRYVYLQKNMVDTNLLQDAARREA 90
>gi|401397969|ref|XP_003880184.1| hypothetical protein NCLIV_006240 [Neospora caninum Liverpool]
gi|325114593|emb|CBZ50149.1| hypothetical protein NCLIV_006240 [Neospora caninum Liverpool]
Length = 101
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 71/95 (74%), Gaps = 2/95 (2%)
Query: 1 MLFFSYFKDLVGRE--VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
M+FFS+F+ LV R+ + VELKNDL I G+LHSVDQ+LNIKL N V D +K PH+LS++
Sbjct: 1 MMFFSFFQTLVERQTQIMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPEKCPHLLSIK 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
NCF+RGS VRYV LPP VDV L D RRE+ G
Sbjct: 61 NCFVRGSAVRYVHLPPSAVDVGQLQDMCRRESASG 95
>gi|408400661|gb|EKJ79738.1| hypothetical protein FPSE_00018 [Fusarium pseudograminearum
CS3096]
Length = 98
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/89 (67%), Positives = 72/89 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ ++G L SVDQYLNIKL++ +VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQLKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VD LL DATRRE
Sbjct: 61 FIRGSVVRYVHLPGASVDTQLLEDATRRE 89
>gi|320039679|gb|EFW21613.1| LSM domain-containing protein [Coccidioides posadasii str.
Silveira]
Length = 98
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L V +ELKND+ IRG L SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP + VD LL DATRREA
Sbjct: 61 FIRGSVVRYIVLPQEAVDRGLLEDATRREA 90
>gi|395328022|gb|EJF60417.1| U6 snRNA-associated Sm-like protein LSm2, partial [Dichomitus
squalens LYAD-421 SS1]
Length = 89
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 72/87 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L + VTVELKNDL+I GTL SVDQ+LNI+L+N +V+D+ ++PHM++V+NCF
Sbjct: 1 LIFSVFKTLTDQRVTVELKNDLSITGTLKSVDQFLNIRLDNIKVLDEARHPHMMAVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRR 88
IRGSVVRYVQLP + VD LL DATRR
Sbjct: 61 IRGSVVRYVQLPAEHVDTQLLEDATRR 87
>gi|119194065|ref|XP_001247636.1| hypothetical protein CIMG_01407 [Coccidioides immitis RS]
gi|392863119|gb|EAS36171.2| small nuclear ribonucleoprotein LSM2 [Coccidioides immitis RS]
Length = 178
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L V +ELKND+ IRG L SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 81 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLSSVKNI 140
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRY+ LP + VD LL DATRREA
Sbjct: 141 FIRGSVVRYIVLPQEAVDRGLLEDATRREA 170
>gi|295672151|ref|XP_002796622.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226283602|gb|EEH39168.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226288343|gb|EEH43855.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides
brasiliensis Pb18]
Length = 98
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L VT+ELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
F+RGSVVRYV LP VD LL DATRREA
Sbjct: 61 FVRGSVVRYVVLPQAEVDRGLLEDATRREA 90
>gi|261203087|ref|XP_002628757.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|239586542|gb|EEQ69185.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|327349625|gb|EGE78482.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 98
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L VT+ELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
F+RGSVVRY+ LP VD LL DATRREA
Sbjct: 61 FVRGSVVRYIVLPQAEVDRGLLEDATRREA 90
>gi|254585643|ref|XP_002498389.1| ZYRO0G09086p [Zygosaccharomyces rouxii]
gi|238941283|emb|CAR29456.1| ZYRO0G09086p [Zygosaccharomyces rouxii]
Length = 95
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV VELKND+ ++GTL SVDQ+LN+KL+N DQ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIELKGTLKSVDQFLNLKLDNISCTDQTKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD++LL DA RREA
Sbjct: 61 FIRGSTVRYVYLNKNMVDINLLQDAARREA 90
>gi|156841541|ref|XP_001644143.1| hypothetical protein Kpol_1053p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156114779|gb|EDO16285.1| hypothetical protein Kpol_1053p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 95
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ ++GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCTDEQKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L VD +LL DA RREA
Sbjct: 61 FIRGSTVRYVYLQKSMVDTNLLQDAARREA 90
>gi|170097796|ref|XP_001880117.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644555|gb|EDR08804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 100
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 71/87 (81%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L ++VTVELKNDL+I G L SVDQ+LNI+L+N +V D+ ++PHM++V+NCF
Sbjct: 1 LIFSVFKTLTDQQVTVELKNDLSITGVLKSVDQFLNIRLDNIKVSDESRHPHMMAVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRR 88
IRGSVVRYVQLP + VD LL DATRR
Sbjct: 61 IRGSVVRYVQLPAEHVDTQLLEDATRR 87
>gi|190344551|gb|EDK36242.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 195
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ IRGTL +VDQYLN+KL+N +++DKYPHM SV+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIRGTLKTVDQYLNLKLDNVICLNEDKYPHMQSVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + + VD LL DA+RR
Sbjct: 61 FIRGSTVRYVHMSSNTVDCTLLQDASRR 88
>gi|146422042|ref|XP_001486963.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 195
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ IRGTL +VDQYLN+KL+N +++DKYPHM SV+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIRGTLKTVDQYLNLKLDNVICLNEDKYPHMQSVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + + VD LL DA+RR
Sbjct: 61 FIRGSTVRYVHMSSNTVDCTLLQDASRR 88
>gi|221504601|gb|EEE30274.1| u6 snRNA-associated sm-like protein Lsm2, putative [Toxoplasma
gondii VEG]
Length = 100
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/94 (61%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Query: 2 LFFSYFKDLVGRE--VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
+FFS+F+ LV R+ + VELKNDL I G+LHSVDQ+LNIKL N V D ++ PH+LSV+N
Sbjct: 1 MFFSFFQTLVERQTQIMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPERCPHLLSVKN 60
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
CFIRGS VRYV LPP VDV L D RRE+ G
Sbjct: 61 CFIRGSAVRYVHLPPSAVDVSQLQDMCRRESAGS 94
>gi|255719896|ref|XP_002556228.1| KLTH0H08008p [Lachancea thermotolerans]
gi|238942194|emb|CAR30366.1| KLTH0H08008p [Lachancea thermotolerans CBS 6340]
Length = 95
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 71/93 (76%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ ++GTL SVDQ+LN+KL+N ++ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCSNESKYPHLSSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
FIRGS VRYV L + VD +LL DA RREA
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDAARREAMSA 93
>gi|353239883|emb|CCA71776.1| related to LSM2-Sm-like (Lsm) protein [Piriformospora indica DSM
11827]
Length = 94
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L VTVELKNDL I G L SVDQYLNI+L+ +V + +++PHM++V+NC
Sbjct: 1 MLIFSVFKTLTDHTVTVELKNDLCITGVLKSVDQYLNIRLDAIKVENAEQHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSV+RYVQLP +D+ LL DATRRE+
Sbjct: 61 FIRGSVIRYVQLPASAMDIQLLEDATRRES 90
>gi|428172897|gb|EKX41803.1| hypothetical protein GUITHDRAFT_141784 [Guillardia theta CCMP2712]
Length = 107
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 78/100 (78%), Gaps = 10/100 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHML----- 55
MLF+S FK L+G+E+ VELKNDLA++GTLHSVDQYLN KL + +V+D++++PHM+
Sbjct: 1 MLFYSVFKRLIGKEIVVELKNDLALKGTLHSVDQYLNFKLLDVQVIDEERFPHMVRSSSS 60
Query: 56 -----SVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
SV+NCFIRGSVVRYVQ+PP +D ++L D+TR E
Sbjct: 61 RARKASVKNCFIRGSVVRYVQIPPGELDPEVLQDSTRTEV 100
>gi|392593575|gb|EIW82900.1| U6 snRNA-associated Sm-like protein LSm2 [Coniophora puteana
RWD-64-598 SS2]
Length = 92
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 72/88 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L ++VTVELKNDL+I G L SVDQ+LNI+L++ V+D+ ++PHM++V+NC
Sbjct: 1 MLIFSVFKTLTDQQVTVELKNDLSITGVLKSVDQFLNIRLDSITVLDEARHPHMMAVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYVQLP + VD LL DATRR
Sbjct: 61 FIRGSVVRYVQLPAEHVDTQLLEDATRR 88
>gi|403215454|emb|CCK69953.1| hypothetical protein KNAG_0D02020 [Kazachstania naganishii CBS
8797]
Length = 95
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ +VRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCDDETKYPHLSTVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DATRREA
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRREA 90
>gi|6319445|ref|NP_009527.1| Lsm2p [Saccharomyces cerevisiae S288c]
gi|586410|sp|P38203.1|LSM2_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Small nuclear ribonucleoprotein D homolog SNP3
gi|536027|emb|CAA84845.1| SNP3 [Saccharomyces cerevisiae]
gi|602898|emb|CAA54505.1| YBL0425 [Saccharomyces cerevisiae]
gi|151946369|gb|EDN64591.1| snRNA-associated protein, Sm class [Saccharomyces cerevisiae
YJM789]
gi|190408851|gb|EDV12116.1| snRNA-associated protein [Saccharomyces cerevisiae RM11-1a]
gi|259144820|emb|CAY77759.1| Lsm2p [Saccharomyces cerevisiae EC1118]
gi|285810309|tpg|DAA07094.1| TPA: Lsm2p [Saccharomyces cerevisiae S288c]
gi|392301193|gb|EIW12282.1| Lsm2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 95
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRREV 90
>gi|225554412|gb|EEH02710.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
G186AR]
gi|240273447|gb|EER36967.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 98
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N
Sbjct: 1 MLFFSFFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
F+RGSVVRY+ LP VD LL DATRREA
Sbjct: 61 FVRGSVVRYIVLPQAEVDRGLLEDATRREAEN 92
>gi|302679514|ref|XP_003029439.1| hypothetical protein SCHCODRAFT_58515 [Schizophyllum commune
H4-8]
gi|300103129|gb|EFI94536.1| hypothetical protein SCHCODRAFT_58515, partial [Schizophyllum
commune H4-8]
Length = 99
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 73/89 (82%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L ++VTVELKNDL+I G L SVDQ+LNI+L++ +V+D+ ++PHM++V+NCF
Sbjct: 1 LIFSVFKTLTDQQVTVELKNDLSITGVLKSVDQFLNIRLDDIKVLDEARHPHMMAVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP + VD LL DATRR A
Sbjct: 61 IRGSVVRYVQLPTEHVDTQLLEDATRRGA 89
>gi|154271292|ref|XP_001536499.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
NAm1]
gi|150409169|gb|EDN04619.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
NAm1]
Length = 98
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N
Sbjct: 1 MLFFSFFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
F+RGSVVRY+ LP VD LL DATRREA
Sbjct: 61 FVRGSVVRYIVLPQAEVDRGLLEDATRREAEN 92
>gi|426197631|gb|EKV47558.1| hypothetical protein AGABI2DRAFT_68745 [Agaricus bisporus var.
bisporus H97]
Length = 101
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 71/87 (81%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L + VTVELKNDL+I G L SVDQ+LNI+L+N +V D++++PHM++V+NCF
Sbjct: 3 LIFSVFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKNCF 62
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRR 88
IRGSVVRYVQLP + VD LL DATRR
Sbjct: 63 IRGSVVRYVQLPAEHVDTQLLEDATRR 89
>gi|255930807|ref|XP_002556960.1| Pc12g00570 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581579|emb|CAP79684.1| Pc12g00570 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 99
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 69/88 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRG L SVDQYLNIKL++ V+D KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGILKSVDQYLNIKLDDIEVLDLAKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYV LP VDV LL DATRR
Sbjct: 61 FIRGSVVRYVMLPRSEVDVGLLEDATRR 88
>gi|409080718|gb|EKM81078.1| hypothetical protein AGABI1DRAFT_36837 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 101
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 71/87 (81%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L + VTVELKNDL+I G L SVDQ+LNI+L+N +V D++++PHM++V+NCF
Sbjct: 3 LIFSVFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKNCF 62
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRR 88
IRGSVVRYVQLP + VD LL DATRR
Sbjct: 63 IRGSVVRYVQLPAEHVDTQLLEDATRR 89
>gi|367000273|ref|XP_003684872.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
gi|357523169|emb|CCE62438.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
Length = 95
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ ++GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNDKTKYPHLTSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DA RREA
Sbjct: 61 FIRGSNVRYVYLQKNMVDTNLLQDAARREA 90
>gi|406866049|gb|EKD19089.1| small nuclear ribonucleoprotein LSM2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 104
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 67/85 (78%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+FK LV EVTVELKND+ IRGTL SVDQYLNIKL+N VV+ KYPH+ SV+N FIRGS
Sbjct: 11 FFKTLVDHEVTVELKNDIQIRGTLKSVDQYLNIKLDNISVVEDLKYPHLSSVKNVFIRGS 70
Query: 66 VVRYVQLPPDGVDVDLLHDATRREA 90
VVRYV LP VD LL DATRREA
Sbjct: 71 VVRYVHLPGSAVDTALLEDATRREA 95
>gi|366990261|ref|XP_003674898.1| hypothetical protein NCAS_0B04420 [Naumovozyma castellii CBS
4309]
gi|342300762|emb|CCC68526.1| hypothetical protein NCAS_0B04420 [Naumovozyma castellii CBS
4309]
Length = 95
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV V+LKND+ ++GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVQLKNDIELKGTLQSVDQFLNLKLDNISCTDETKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DATRREA
Sbjct: 61 FIRGSTVRYVYLNKNIVDTNLLQDATRREA 90
>gi|349576355|dbj|GAA21526.1| K7_Lsm2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 95
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
F+RGS VRYV L + VD +LL DATRRE
Sbjct: 61 FVRGSTVRYVYLNKNMVDTNLLQDATRREV 90
>gi|425767839|gb|EKV06392.1| hypothetical protein PDIG_77590 [Penicillium digitatum PHI26]
gi|425783770|gb|EKV21591.1| hypothetical protein PDIP_04700 [Penicillium digitatum Pd1]
Length = 121
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/88 (68%), Positives = 69/88 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRG L SVDQYLNIKL++ V+D KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGILKSVDQYLNIKLDDIEVLDLAKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYV LP VDV LL DATRR
Sbjct: 61 FIRGSVVRYVMLPRSEVDVGLLEDATRR 88
>gi|164656198|ref|XP_001729227.1| hypothetical protein MGL_3694 [Malassezia globosa CBS 7966]
gi|159103117|gb|EDP42013.1| hypothetical protein MGL_3694 [Malassezia globosa CBS 7966]
Length = 93
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 70/90 (77%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
FS FK L G+ VTVELKNDLAI+GTL SVDQ+LN KL++ +V+D+ +YPHML+V++ FI
Sbjct: 1 MFSAFKTLTGQTVTVELKNDLAIQGTLKSVDQFLNFKLDDIKVLDEARYPHMLAVKSTFI 60
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RGSVVR V +P VD LL DATRRE+
Sbjct: 61 RGSVVRSVHIPAAAVDTQLLEDATRRESEA 90
>gi|344303994|gb|EGW34243.1| snRNA-associated protein, Sm class [Spathaspora passalidarum NRRL
Y-27907]
Length = 100
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 70/89 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQYLN+KL+N + +KYPH+ SV+
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQYLNLKLDNISCTNGNKYPHLQSVKTL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGS VRYV + P+ VD LL DA+RR+
Sbjct: 61 FIRGSTVRYVHMSPNSVDCTLLQDASRRK 89
>gi|322708983|gb|EFZ00560.1| small nuclear ribonucleoprotein LSM2 [Metarhizium anisopliae ARSEF
23]
Length = 108
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
S+FK L+ EVTVELKND+ ++GTL SVDQYLNIKL++ VV++ KYPH+ SV+N FIRG
Sbjct: 15 SFFKTLIDHEVTVELKNDIQLKGTLKSVDQYLNIKLDDISVVEELKYPHLSSVKNVFIRG 74
Query: 65 SVVRYVQLPPDGVDVDLLHDATRREA 90
SVVRYV LP VD LL DATRREA
Sbjct: 75 SVVRYVHLPAGSVDTQLLEDATRREA 100
>gi|255721349|ref|XP_002545609.1| hypothetical protein CTRG_00390 [Candida tropicalis MYA-3404]
gi|240136098|gb|EER35651.1| hypothetical protein CTRG_00390 [Candida tropicalis MYA-3404]
Length = 96
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQ+LN+KL+N + ++YP++ +V+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQFLNLKLDNITCTNSEQYPYLDAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV + P+ VD LL DA+RREA
Sbjct: 61 FIRGSTVRYVHMNPNSVDCTLLQDASRREA 90
>gi|390602179|gb|EIN11572.1| U6 snRNA-associated Sm-like protein LSm2, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 114
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 70/89 (78%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L + VTVELKNDL I GTL SVDQ+LNI+L+ V+D+ ++PHM++V+NCF
Sbjct: 1 LIFSVFKTLTDQRVTVELKNDLCITGTLKSVDQFLNIRLDGISVLDEARHPHMMAVKNCF 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP + VD LL DATRR A
Sbjct: 61 IRGSVVRYVQLPAEHVDTQLLEDATRRGA 89
>gi|365981885|ref|XP_003667776.1| hypothetical protein NDAI_0A03760 [Naumovozyma dairenensis CBS
421]
gi|343766542|emb|CCD22533.1| hypothetical protein NDAI_0A03760 [Naumovozyma dairenensis CBS
421]
Length = 95
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV V+LKND+ ++GTL SVDQ+LN+KL+N D KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVQLKNDIELKGTLQSVDQFLNLKLDNISCTDTKKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DATRREA
Sbjct: 61 FIRGSTVRYVYLNKNIVDTNLLQDATRREA 90
>gi|354545836|emb|CCE42565.1| hypothetical protein CPAR2_202080 [Candida parapsilosis]
Length = 96
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ IRG L SVDQYLN+KL++ + DKYP++ +V+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIRGILKSVDQYLNLKLDDVTCTNCDKYPYLDAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV + P+ VD LL DA+RREA
Sbjct: 61 FIRGSTVRYVHMNPNSVDCTLLQDASRREA 90
>gi|225683183|gb|EEH21467.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 118
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 71/92 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L VTVELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNHTVTVELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
F+RGSVVRYV LP VD LL DATRR +G
Sbjct: 61 FVRGSVVRYVVLPQAEVDRGLLEDATRRGIQG 92
>gi|320591852|gb|EFX04291.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 113
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 68/85 (80%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+FK L+ VTVELKND+ IRGTL SVDQYLNIKL++ VV++ KYPHM +V+N FIRGS
Sbjct: 18 FFKTLIDTTVTVELKNDIQIRGTLKSVDQYLNIKLDDITVVEEIKYPHMSAVKNVFIRGS 77
Query: 66 VVRYVQLPPDGVDVDLLHDATRREA 90
VVRYV LP VDV LL DATRREA
Sbjct: 78 VVRYVHLPAAAVDVSLLEDATRREA 102
>gi|121716437|ref|XP_001275808.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
clavatus NRRL 1]
gi|119403965|gb|EAW14382.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
clavatus NRRL 1]
Length = 98
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 73/90 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYVMLPRSEVDVGLLEDATRREA 90
>gi|448525765|ref|XP_003869197.1| Snp3 U6 snRNA-associated protein [Candida orthopsilosis Co
90-125]
gi|380353550|emb|CCG23061.1| Snp3 U6 snRNA-associated protein [Candida orthopsilosis]
Length = 96
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ IRG L SVDQYLN+KL++ + DKYP++ +V+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIRGILKSVDQYLNLKLDDITCTNCDKYPYLDAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV + P+ VD LL DA+RREA
Sbjct: 61 FIRGSTVRYVHMNPNSVDCTLLQDASRREA 90
>gi|45198700|ref|NP_985729.1| AFR182Cp [Ashbya gossypii ATCC 10895]
gi|44984710|gb|AAS53553.1| AFR182Cp [Ashbya gossypii ATCC 10895]
gi|374108960|gb|AEY97866.1| FAFR182Cp [Ashbya gossypii FDAG1]
Length = 95
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ ++GTL SVDQ+LN+KL+N ++ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNNEAKYPHLSSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L VD +LL DA RREA
Sbjct: 61 FIRGSTVRYVYLKKGMVDTNLLQDAARREA 90
>gi|126140352|ref|XP_001386698.1| snRNA-associated protein, Sm class [Scheffersomyces stipitis CBS
6054]
gi|126093982|gb|ABN68669.1| snRNA-associated protein, Sm class [Scheffersomyces stipitis CBS
6054]
Length = 94
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 69/88 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQYLN+KL+N V+ YPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQYLNLKLDNISCVNGTNYPHLHSVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + P+ VD LL DA+RR
Sbjct: 61 FIRGSTVRYVHMSPNSVDCTLLQDASRR 88
>gi|393238250|gb|EJD45788.1| U6 snRNA-associated Sm-like protein LSm2, partial [Auricularia
delicata TFB-10046 SS5]
Length = 101
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L FS FK L + VTVELKNDL I G L SVDQ+LNI+L++ +V+D+ ++PHM +++NCF
Sbjct: 8 LIFSVFKTLTDQTVTVELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHM-ALKNCF 66
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREA 90
IRGSVVRYVQLP + VD LL DATRREA
Sbjct: 67 IRGSVVRYVQLPANAVDTQLLEDATRREA 95
>gi|410077643|ref|XP_003956403.1| hypothetical protein KAFR_0C02750 [Kazachstania africana CBS
2517]
gi|372462987|emb|CCF57268.1| hypothetical protein KAFR_0C02750 [Kazachstania africana CBS
2517]
Length = 95
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 70/89 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV V+LKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVQLKNDIEIKGTLQSVDQFLNLKLDNISCTDETKYPHLGSVRNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGS VRYV L + VD +LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDKNLLQDATRRE 89
>gi|145242038|ref|XP_001393665.1| U6 snRNA-associated Sm-like protein LSm2 [Aspergillus niger CBS
513.88]
gi|134078209|emb|CAK40288.1| unnamed protein product [Aspergillus niger]
gi|358374995|dbj|GAA91582.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 98
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 73/90 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VD+ LL DATRREA
Sbjct: 61 FIRGSVVRYVMLPRSEVDIGLLEDATRREA 90
>gi|448079672|ref|XP_004194435.1| Piso0_004929 [Millerozyma farinosa CBS 7064]
gi|359375857|emb|CCE86439.1| Piso0_004929 [Millerozyma farinosa CBS 7064]
Length = 124
Score = 120 bits (301), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 70/88 (79%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQYLN+KL+N +++ KYPH+ +++N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQYLNLKLDNISGINETKYPHLSAIKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + P VD LL DA+RR
Sbjct: 61 FIRGSTVRYVHMDPRSVDCTLLQDASRR 88
>gi|50425359|ref|XP_461273.1| DEHA2F21252p [Debaryomyces hansenii CBS767]
gi|49656942|emb|CAG89664.1| DEHA2F21252p [Debaryomyces hansenii CBS767]
Length = 97
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 69/88 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+G L SVDQYLN+KL+N V++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGILKSVDQYLNLKLDNISCVNESKYPHLQSVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + + VD LL DA+RR
Sbjct: 61 FIRGSTVRYVHMNSNSVDCTLLQDASRR 88
>gi|19075959|ref|NP_588459.1| U6 snRNP-associated protein core protein (predicted)
[Schizosaccharomyces pombe 972h-]
gi|59799782|sp|O94408.1|LSM2_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm2
gi|4008568|emb|CAA22485.1| U6 snRNP-associated protein core protein (predicted)
[Schizosaccharomyces pombe]
Length = 96
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 69/89 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+ EVTVELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV + VD LL DA RR+
Sbjct: 61 FIRGSVVRYVHMSSAYVDTILLADACRRD 89
>gi|164424298|ref|XP_958875.2| hypothetical protein NCU07382 [Neurospora crassa OR74A]
gi|157070456|gb|EAA29639.2| hypothetical protein NCU07382 [Neurospora crassa OR74A]
Length = 108
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 69/84 (82%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
S+FK L+ EVTVELKND+ IRG L SVDQ+LNIKL+N +VV++ KYPH+ +V+N FIRG
Sbjct: 7 SFFKTLIDHEVTVELKNDIQIRGVLKSVDQFLNIKLDNIQVVEELKYPHLSAVKNVFIRG 66
Query: 65 SVVRYVQLPPDGVDVDLLHDATRR 88
SVVRYV LP + VD+ LL DATRR
Sbjct: 67 SVVRYVHLPQESVDIQLLEDATRR 90
>gi|124506327|ref|XP_001351761.1| U6 snRNA-associated sm-like protein Lsm2, putative [Plasmodium
falciparum 3D7]
gi|23504690|emb|CAD51568.1| U6 snRNA-associated sm-like protein Lsm2, putative [Plasmodium
falciparum 3D7]
Length = 103
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 71/93 (76%), Gaps = 2/93 (2%)
Query: 1 MLFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLFF++F+ L + VTVELKNDL I G LHSVDQYLNIKL N V + +KYPH+LS++
Sbjct: 1 MLFFTFFQQLAEKNHHVTVELKNDLQISGVLHSVDQYLNIKLTNVSVNNPEKYPHLLSIK 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
+CF+RGSVVRYV LP + +DV LH R+EA+
Sbjct: 61 SCFVRGSVVRYVFLPSNEIDVQKLHHMCRQEAK 93
>gi|50288309|ref|XP_446583.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525891|emb|CAG59510.1| unnamed protein product [Candida glabrata]
Length = 95
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 69/89 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV V+LKND+ I+GTL SVDQ+LN+KL+N D KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVQLKNDIEIKGTLQSVDQFLNLKLDNISCNDDKKYPHLSSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGS VRYV L + VD +LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
>gi|430813736|emb|CCJ28938.1| unnamed protein product [Pneumocystis jirovecii]
Length = 99
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 74/91 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+ +V VELKNDL+IRG L S DQ+LN+++++ +V+++ KYPH+ +V+N
Sbjct: 1 MLFYSFFKTLIDTQVVVELKNDLSIRGILKSCDQFLNLRIDDCQVLEELKYPHLSAVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV +P + VD LL DATRREA+
Sbjct: 61 FIRGSVVRYVHIPSENVDTSLLEDATRREAQ 91
>gi|426352541|ref|XP_004043770.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Gorilla
gorilla gorilla]
Length = 186
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 68/100 (68%), Gaps = 10/100 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIR----------GTLHSVDQYLNIKLENTRVVDQDK 50
MLF+S+FK LVG++V VELKNDL+ G YLNIKL + V D +K
Sbjct: 82 MLFYSFFKSLVGKDVVVELKNDLSTGNASDIDVYRLGPQSKTSTYLNIKLTDISVTDPEK 141
Query: 51 YPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
YPHMLSV+NCFIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 142 YPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 181
>gi|259483912|tpe|CBF79688.1| TPA: small nuclear ribonucleoprotein (LSM2), putative
(AFU_orthologue; AFUA_2G15210) [Aspergillus nidulans
FGSC A4]
Length = 98
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 73/90 (81%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQVVTIELKNDIRIRGTLKSVDQYLNIKLDDIDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYVVLPRSEVDVGLLEDATRREA 90
>gi|448084158|ref|XP_004195535.1| Piso0_004929 [Millerozyma farinosa CBS 7064]
gi|359376957|emb|CCE85340.1| Piso0_004929 [Millerozyma farinosa CBS 7064]
Length = 120
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 70/88 (79%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQYLN+KL+N +++ KYPH+ +++N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQYLNLKLDNISGINETKYPHLSAIKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + P VD LL DA+RR
Sbjct: 61 FIRGSTVRYVHMDPRSVDCTLLQDASRR 88
>gi|156095438|ref|XP_001613754.1| U6 snRNA-associated Sm-like protein LSm4 [Plasmodium vivax Sal-1]
gi|221056945|ref|XP_002259610.1| U6 snRNA-associated sm-like protein Lsm2 [Plasmodium knowlesi
strain H]
gi|148802628|gb|EDL44027.1| U6 snRNA-associated Sm-like protein LSm4, putative [Plasmodium
vivax]
gi|193809682|emb|CAQ40383.1| U6 snRNA-associated sm-like protein Lsm2,putative [Plasmodium
knowlesi strain H]
Length = 103
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
Query: 1 MLFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLFF++F+ L + VTVELKNDL I G LHSVDQYLNIKL N V +KYPH+LS++
Sbjct: 1 MLFFTFFQQLAEKNHHVTVELKNDLQISGVLHSVDQYLNIKLTNVTVNHPEKYPHLLSIK 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
+CF+RGSVVRYV LP +DV+ LH R+EA+
Sbjct: 61 SCFVRGSVVRYVFLPSKEIDVEKLHHMCRKEAK 93
>gi|115401818|ref|XP_001216497.1| hypothetical protein ATEG_07876 [Aspergillus terreus NIH2624]
gi|114190438|gb|EAU32138.1| hypothetical protein ATEG_07876 [Aspergillus terreus NIH2624]
Length = 957
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/89 (68%), Positives = 72/89 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV LP VD+ LL DATRR+
Sbjct: 61 FIRGSVVRYVMLPRSEVDIGLLEDATRRD 89
>gi|149239064|ref|XP_001525408.1| hypothetical protein LELG_03336 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450901|gb|EDK45157.1| hypothetical protein LELG_03336 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 96
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I G L SVDQ+LN+KL+N + + DKYP++ +V+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEITGVLKSVDQFLNLKLDNIKCNNGDKYPYLEAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV + P+ VD LL DA+RREA
Sbjct: 61 FIRGSTVRYVHINPNLVDCTLLQDASRREA 90
>gi|256269256|gb|EEU04578.1| Lsm2p [Saccharomyces cerevisiae JAY291]
Length = 96
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Query: 1 MLFFSYFKDLVGREVTVE-LKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
MLFFS+FK LV +EV VE LKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVEVLKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRN 60
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DATRRE
Sbjct: 61 IFIRGSTVRYVYLNKNMVDTNLLQDATRREV 91
>gi|213405801|ref|XP_002173672.1| U6 snRNP-associated protein core protein [Schizosaccharomyces
japonicus yFS275]
gi|212001719|gb|EEB07379.1| U6 snRNP-associated protein core protein [Schizosaccharomyces
japonicus yFS275]
Length = 96
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 67/89 (75%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+ EVTVELKND+ IRG L SVDQ+LN+KLEN V D KYPH+ +V+N
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMCIRGVLKSVDQFLNVKLENISVTDVQKYPHLAAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV + VD LL DA RR+
Sbjct: 61 FIRGSVVRYVHMSSSHVDTILLADACRRD 89
>gi|241958540|ref|XP_002421989.1| RNA processing complex subunit, putative; U6 snRNA-associated
protein, putative [Candida dubliniensis CD36]
gi|223645334|emb|CAX39990.1| RNA processing complex subunit, putative [Candida dubliniensis
CD36]
gi|238879887|gb|EEQ43525.1| hypothetical protein CAWG_01763 [Candida albicans WO-1]
Length = 96
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 71/90 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQ+LN+KL+N + +YP++ +V+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQFLNLKLDNITCTNGQRYPYLGAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV + P+ VD LL DA+RREA
Sbjct: 61 FIRGSNVRYVHMNPNSVDCTLLQDASRREA 90
>gi|443896813|dbj|GAC74156.1| predicted snRNP core protein [Pseudozyma antarctica T-34]
Length = 92
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 4/90 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS FK L G++VT+ELKNDLAI+GTL SVDQ ++ N RV+D+ K+PHM++V++
Sbjct: 1 MLIFSAFKTLTGQQVTIELKNDLAIQGTLKSVDQCID----NIRVLDEAKHPHMMAVKSA 56
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV +P VD LL DATRREA
Sbjct: 57 FIRGSVVRYVHIPAAAVDTQLLEDATRREA 86
>gi|344228779|gb|EGV60665.1| U6 snRNA-associated Sm-like protein LSm2 [Candida tenuis ATCC
10573]
Length = 115
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 68/88 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+G L SVDQYLN+KL+N + KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIKGVLKSVDQYLNLKLDNISCTNDVKYPHLNSVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRY+ L P+ VD LL DA+RR
Sbjct: 61 FIRGSTVRYIHLNPNSVDCTLLQDASRR 88
>gi|443916754|gb|ELU37715.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 112
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 73/106 (68%), Gaps = 16/106 (15%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS---- 56
ML FS FK L +EVTVELKNDL+I G L SVDQ+LN++L+ +V D+ ++PHM+S
Sbjct: 1 MLIFSVFKTLTDQEVTVELKNDLSITGVLKSVDQFLNVRLDAIKVHDEARHPHMVSLDIL 60
Query: 57 ------------VRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
V+NCFIRGSV+RYVQLP GVD LL DATR+EA
Sbjct: 61 FVGLPLPIEQMAVKNCFIRGSVIRYVQLPASGVDTQLLEDATRKEA 106
>gi|363754415|ref|XP_003647423.1| hypothetical protein Ecym_6224 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891060|gb|AET40606.1| hypothetical protein Ecym_6224 [Eremothecium cymbalariae
DBVPG#7215]
Length = 95
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 68/90 (75%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+ K LV +EVTVELKND+ ++GTL SVDQ+LN+KL+N + KYPH+ SVRN
Sbjct: 1 MLFFSFLKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNNNAKYPHLSSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L VD +LL DA RREA
Sbjct: 61 FIRGSTVRYVYLNKSIVDTNLLQDAARREA 90
>gi|238488709|ref|XP_002375592.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
flavus NRRL3357]
gi|317136870|ref|XP_003189990.1| U6 snRNA-associated Sm-like protein LSm2 [Aspergillus oryzae
RIB40]
gi|220697980|gb|EED54320.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
flavus NRRL3357]
Length = 98
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 72/90 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + V +ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVIIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYV LP VDV LL DATRREA
Sbjct: 61 FIRGSVVRYVVLPRSEVDVGLLEDATRREA 90
>gi|429849698|gb|ELA25053.1| small nuclear ribonucleoprotein lsm2 [Colletotrichum
gloeosporioides Nara gc5]
Length = 132
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 76/126 (60%), Gaps = 34/126 (26%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHML----- 55
MLFFS+FK L+ EVTVELKND+ IRGTL SVDQYLNIKL++ VV++ KYPH++
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQIRGTLKSVDQYLNIKLDDISVVEELKYPHLVSHPLW 60
Query: 56 -----------------------------SVRNCFIRGSVVRYVQLPPDGVDVDLLHDAT 86
SV+N FIRGSVVRYV LP + VDV LL DAT
Sbjct: 61 PLLSLGLVFSLSVMLPDDRPPPANIDSQSSVKNVFIRGSVVRYVHLPANHVDVPLLEDAT 120
Query: 87 RREARG 92
RREA
Sbjct: 121 RREAAA 126
>gi|219113311|ref|XP_002186239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583089|gb|ACI65709.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 98
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 71/88 (80%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
+F S+FK LVG+EV VELKND+ + GTLHSVDQYLNIKL + +VV ++YP ++++++ F
Sbjct: 2 IFLSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNIKLIHVQVVQPERYPQLVALKSVF 61
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRRE 89
+RGSVVRY+Q+ P VD +LL DA R+E
Sbjct: 62 VRGSVVRYIQIDPQHVDTELLQDAARKE 89
>gi|342874372|gb|EGU76386.1| hypothetical protein FOXB_13064 [Fusarium oxysporum Fo5176]
Length = 120
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 69/86 (80%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR 63
+S+FK L+ EVTVELKND+ ++G L SVDQYLNIKL++ +VV++ KYPH+ SV+N FIR
Sbjct: 26 YSFFKTLIDHEVTVELKNDIQLKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIR 85
Query: 64 GSVVRYVQLPPDGVDVDLLHDATRRE 89
GSVVRYV LP VD LL DATRRE
Sbjct: 86 GSVVRYVHLPGASVDTQLLEDATRRE 111
>gi|156063184|ref|XP_001597514.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154697044|gb|EDN96782.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 89
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV EVTVELKND+ I+G L SVDQYLNIKL++ +VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLVDSEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDA 85
FIRGSVVRYV LP VD LL D
Sbjct: 61 FIRGSVVRYVHLPGGAVDTTLLEDG 85
>gi|258575267|ref|XP_002541815.1| SNP3 protein [Uncinocarpus reesii 1704]
gi|237902081|gb|EEP76482.1| SNP3 protein [Uncinocarpus reesii 1704]
Length = 1064
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/84 (63%), Positives = 65/84 (77%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++FK L V +ELKND+ IRGTL SVDQYLN+KL++ V+D DKYPH+ SV+N FIRG
Sbjct: 921 NFFKTLTNHTVIIELKNDIRIRGTLKSVDQYLNVKLDDIEVIDLDKYPHLSSVKNIFIRG 980
Query: 65 SVVRYVQLPPDGVDVDLLHDATRR 88
SVVRY+ LP + VD LL DATRR
Sbjct: 981 SVVRYIVLPQEAVDRGLLEDATRR 1004
>gi|71002350|ref|XP_755856.1| small nuclear ribonucleoprotein (LSM2) [Aspergillus fumigatus
Af293]
gi|119481913|ref|XP_001260985.1| small nuclear ribonucleoprotein (LSM2), putative [Neosartorya
fischeri NRRL 181]
gi|66853494|gb|EAL93818.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
fumigatus Af293]
gi|119409139|gb|EAW19088.1| small nuclear ribonucleoprotein (LSM2), putative [Neosartorya
fischeri NRRL 181]
gi|159129913|gb|EDP55027.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
fumigatus A1163]
Length = 91
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 71/88 (80%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYV LP VDV LL DATRR
Sbjct: 61 FIRGSVVRYVMLPRSEVDVGLLEDATRR 88
>gi|401882879|gb|EJT47119.1| prenyltransferase [Trichosporon asahii var. asahii CBS 2479]
Length = 803
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/83 (65%), Positives = 65/83 (78%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+FK L + +TVELKNDL I GTL SVDQ+LNI+L+ RV D +KYPHML+V+N FIRGS
Sbjct: 15 FFKTLTDQVITVELKNDLCITGTLKSVDQFLNIRLDGIRVEDPEKYPHMLAVKNVFIRGS 74
Query: 66 VVRYVQLPPDGVDVDLLHDATRR 88
VVRYV++P VD LL DATRR
Sbjct: 75 VVRYVRMPARTVDTTLLEDATRR 97
>gi|402073708|gb|EJT69260.1| U6 snRNA-associated Sm-like protein LSm2 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 103
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/84 (66%), Positives = 66/84 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ E+TVELKN + IRGTL SVDQYLN+KLEN VV+ KYPH+ +V+N
Sbjct: 1 MLFFSFFKTLIDVEITVELKNSIQIRGTLKSVDQYLNLKLENISVVEDVKYPHLSAVKNV 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHD 84
FIRGSVVRY+ LP VDV LL D
Sbjct: 61 FIRGSVVRYIHLPGAHVDVPLLED 84
>gi|367010550|ref|XP_003679776.1| hypothetical protein TDEL_0B04360 [Torulaspora delbrueckii]
gi|359747434|emb|CCE90565.1| hypothetical protein TDEL_0B04360 [Torulaspora delbrueckii]
Length = 93
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVT LKND+ ++GTL SVDQ+LN+KL+N ++ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVT--LKNDIELKGTLKSVDQFLNLKLDNISCSNESKYPHLTSVRNI 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DA RREA
Sbjct: 59 FIRGSTVRYVYLNKNMVDTNLLQDAARREA 88
>gi|66362654|ref|XP_628293.1| snRNP core protein [Cryptosporidium parvum Iowa II]
gi|46229862|gb|EAK90680.1| snRNP core protein [Cryptosporidium parvum Iowa II]
Length = 107
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 69/93 (74%), Gaps = 2/93 (2%)
Query: 2 LFFSYFKDLVGREV--TVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
LFF++ + L+ ++V TVELKNDL I GTLHS+DQYLNIKL NT V + + H+ S++N
Sbjct: 6 LFFNFLQTLIEKQVVVTVELKNDLQITGTLHSIDQYLNIKLNNTTVNQNESFIHLGSLKN 65
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
CFIRGSVVRY+ PP VD++LL A R+E R
Sbjct: 66 CFIRGSVVRYIFFPPSEVDIELLQKACRKELRS 98
>gi|58264746|ref|XP_569529.1| u6 snRNA-associated sm-like protein lsm2 [Cryptococcus neoformans
var. neoformans JEC21]
gi|57225761|gb|AAW42222.1| u6 snRNA-associated sm-like protein lsm2, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 108
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 68/84 (80%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
LV + +TVELKNDL+I GTL SVDQ+LNI+L+N V D +++PHM++V+NCFIRGSVVRY
Sbjct: 23 LVNQVITVELKNDLSITGTLKSVDQFLNIRLDNISVEDPERHPHMMAVKNCFIRGSVVRY 82
Query: 70 VQLPPDGVDVDLLHDATRREARGG 93
V++ VD LL DATRREA+ G
Sbjct: 83 VRMAARSVDTTLLEDATRREAKEG 106
>gi|68476979|ref|XP_717467.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
gi|68477168|ref|XP_717377.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
gi|46439086|gb|EAK98408.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
gi|46439180|gb|EAK98501.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
Length = 103
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 69/88 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EVTVELKND+ I+GTL SVDQ+LN+KL+N + +YP++ +V+N
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQFLNLKLDNITCTNGQRYPYLGAVKNL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS VRYV + P+ VD LL DA+RR
Sbjct: 61 FIRGSNVRYVHMNPNSVDCTLLQDASRR 88
>gi|393238251|gb|EJD45789.1| U6 snRNA-associated Sm-like protein LSm2 [Auricularia delicata
TFB-10046 SS5]
Length = 97
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
Y K L + VTVELKNDL I G L SVDQ+LNI+L++ +V+D+ ++PHM +++NCFIRGS
Sbjct: 8 YSKTLTDQTVTVELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHM-ALKNCFIRGS 66
Query: 66 VVRYVQLPPDGVDVDLLHDATRREA 90
VVRYVQLP + VD LL DATRREA
Sbjct: 67 VVRYVQLPANAVDTQLLEDATRREA 91
>gi|403224094|dbj|BAM42224.1| U6 snRNP protein Lsm2 [Theileria orientalis strain Shintoku]
Length = 100
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
Query: 1 MLFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLF+++F+ LV + +VT+ELKNDL I G LHSVDQYLNIKL N D D+YPH+LSV
Sbjct: 1 MLFYNFFQTLVEKNAKVTIELKNDLQISGKLHSVDQYLNIKLTNVTANDTDRYPHLLSVV 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
NCFIRGSVVRYV P +D + L + RR+A
Sbjct: 61 NCFIRGSVVRYVFFNPSDIDTEELQELCRRQA 92
>gi|323448092|gb|EGB03995.1| hypothetical protein AURANDRAFT_33162 [Aureococcus
anophagefferens]
Length = 91
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 67/83 (80%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
+ FK LVG+E+ VELKND+A+ GTLHS+DQYLNIKL NT+VVD ++P +++V + F+RG
Sbjct: 1 AMFKTLVGKEIAVELKNDVALTGTLHSIDQYLNIKLLNTKVVDAARHPQLVAVTSVFVRG 60
Query: 65 SVVRYVQLPPDGVDVDLLHDATR 87
SVVRY+Q+P VD +LL DA R
Sbjct: 61 SVVRYIQIPAADVDTELLQDACR 83
>gi|50310953|ref|XP_455499.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644635|emb|CAG98207.1| KLLA0F09207p [Kluyveromyces lactis]
Length = 95
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 65/89 (73%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML FS+FK LV EV VELKN + + GTL SVDQ+LN+KL+N + +KYPH+ SVRN
Sbjct: 1 MLLFSFFKTLVDHEVKVELKNGIELTGTLKSVDQFLNLKLDNISSNNNEKYPHLSSVRNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGS VRYV L VD +LL DATRRE
Sbjct: 61 FIRGSTVRYVHLKKSMVDTNLLQDATRRE 89
>gi|82541052|ref|XP_724797.1| Sm protein [Plasmodium yoelii yoelii 17XNL]
gi|23479567|gb|EAA16362.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 125
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 2 LFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
LFF++F+ L + +T+ELKNDL I G LHSVDQYLNIKL N V + +KYPH+LS+++
Sbjct: 23 LFFTFFQQLAEKNQHITIELKNDLQISGVLHSVDQYLNIKLTNISVNNPEKYPHLLSIKS 82
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
CF+RGSVVRYV LP + V+V+ L R+EA+
Sbjct: 83 CFVRGSVVRYVFLPSNEVNVEKLRHMCRQEAK 114
>gi|325087346|gb|EGC40656.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus H88]
Length = 148
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 66/87 (75%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+FK + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N F+RGS
Sbjct: 56 FFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVRGS 115
Query: 66 VVRYVQLPPDGVDVDLLHDATRREARG 92
VVRY+ LP VD LL DATRREA
Sbjct: 116 VVRYIVLPQAEVDRGLLEDATRREAEN 142
>gi|321253219|ref|XP_003192670.1| u6 snRNA-associated sm-like protein lsm2 [Cryptococcus gattii
WM276]
gi|317459139|gb|ADV20883.1| u6 snRNA-associated sm-like protein lsm2, putative [Cryptococcus
gattii WM276]
Length = 105
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
+TVELKNDL+I GTL SVDQ+LNI+L+N V D +K+PHM++V+NCFIRGSVVRYV++
Sbjct: 25 ITVELKNDLSITGTLKSVDQFLNIRLDNISVEDPEKHPHMMAVKNCFIRGSVVRYVRMAA 84
Query: 75 DGVDVDLLHDATRREARGG 93
VD LL DATRREA+ G
Sbjct: 85 RSVDTTLLEDATRREAKEG 103
>gi|68065924|ref|XP_674946.1| u6 snRNA-associated sm-like protein [Plasmodium berghei strain
ANKA]
gi|56493843|emb|CAI00099.1| u6 snRNA-associated sm-like protein Lsm2, putative [Plasmodium
berghei]
Length = 125
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 69/92 (75%), Gaps = 2/92 (2%)
Query: 2 LFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
LFF++F+ L + +T+ELKNDL I G LHSVDQYLNIKL N V + +KYPH+LS++
Sbjct: 23 LFFTFFQQLAEKNQHITIELKNDLQISGVLHSVDQYLNIKLTNISVNNPEKYPHLLSIKT 82
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
CF+RGSVVRYV LP + V+++ L R+EA+
Sbjct: 83 CFVRGSVVRYVFLPSNEVNIEKLRHMCRQEAK 114
>gi|347838545|emb|CCD53117.1| hypothetical protein [Botryotinia fuckeliana]
Length = 565
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/77 (68%), Positives = 63/77 (81%)
Query: 14 EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73
EVTVELKND+ I+G L SVDQYLNIKL++ +VV++ KYPH+ SV+N FIRGSVVRYV LP
Sbjct: 481 EVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVVRYVHLP 540
Query: 74 PDGVDVDLLHDATRREA 90
+D LL DATRREA
Sbjct: 541 GGVIDTALLEDATRREA 557
>gi|209879656|ref|XP_002141268.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556874|gb|EEA06919.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 120
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Query: 1 MLFFSYFKDLVGRE--VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
+LFF++ + L+ + VTVELKNDL I GTLHS+DQYLNIKL V ++Y HM S++
Sbjct: 17 VLFFNFLQTLIDKSIVVTVELKNDLQITGTLHSIDQYLNIKLNEISVNQNEQYVHMNSLK 76
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
NCFIRGSVVRY+ PP VD+ LL ++ R+E +
Sbjct: 77 NCFIRGSVVRYIFFPPSLVDIGLLQESCRKEIKA 110
>gi|212544302|ref|XP_002152305.1| small nuclear ribonucleoprotein (LSM2), putative [Talaromyces
marneffei ATCC 18224]
gi|210065274|gb|EEA19368.1| small nuclear ribonucleoprotein (LSM2), putative [Talaromyces
marneffei ATCC 18224]
Length = 103
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 69/88 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L VTVELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N
Sbjct: 1 MLFFSFFKTLTNHIVTVELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGSVVRYV LP VD LL DATRR
Sbjct: 61 FIRGSVVRYVVLPSAEVDRGLLEDATRR 88
>gi|156084604|ref|XP_001609785.1| u6 snRNA-associated sm-like protein Lsm2 [Babesia bovis T2Bo]
gi|156084652|ref|XP_001609809.1| u6 snRNA-associated sm-like protein Lsm2 [Babesia bovis T2Bo]
gi|156084660|ref|XP_001609813.1| u6 snRNA-associated sm-like protein [Babesia bovis T2Bo]
gi|154797037|gb|EDO06217.1| u6 snRNA-associated sm-like protein Lsm2, putative [Babesia
bovis]
gi|154797061|gb|EDO06241.1| u6 snRNA-associated sm-like protein Lsm2, putative [Babesia
bovis]
gi|154797065|gb|EDO06245.1| u6 snRNA-associated sm-like protein, putative [Babesia bovis]
Length = 99
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 1 MLFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLFF++F+ L G VTVELKNDL + G LH+VDQYLN KL N D ++YPH+LSV
Sbjct: 1 MLFFNFFQSLAEKGASVTVELKNDLQLTGRLHAVDQYLNFKLSNVTASDTERYPHLLSVV 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
NCF+RGSVVRYV L V+ + L + RREA
Sbjct: 61 NCFVRGSVVRYVYLNSSDVNTEELQELCRREA 92
>gi|429329401|gb|AFZ81160.1| LSM domain-containing protein [Babesia equi]
Length = 170
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 2 LFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
LFF++F+ LV + +VT+ELKNDL I G LH+VDQYLNIKL N D ++YPH+LSV N
Sbjct: 72 LFFNFFQTLVEKNAKVTIELKNDLQISGKLHAVDQYLNIKLSNVTASDTERYPHLLSVMN 131
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
CF+RGSVVRYV P+ ++ + L + RRE
Sbjct: 132 CFVRGSVVRYVFFNPEDINTEELQELCRRE 161
>gi|11138533|gb|AAG31431.1|AF204154_1 snRNP core protein SMX5b [Mus musculus]
gi|11138535|gb|AAG31432.1|AF204155_1 snRNP core protein SMX5b [Mus musculus]
Length = 78
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 57/72 (79%)
Query: 19 LKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVD 78
L L+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD
Sbjct: 2 LPAGLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 61
Query: 79 VDLLHDATRREA 90
LL DA R+EA
Sbjct: 62 TQLLQDAARKEA 73
>gi|432089451|gb|ELK23393.1| Sialidase-1 [Myotis davidii]
Length = 771
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/66 (75%), Positives = 54/66 (81%)
Query: 25 IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHD 84
I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD LL D
Sbjct: 701 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 760
Query: 85 ATRREA 90
A R+EA
Sbjct: 761 AARKEA 766
>gi|46105464|ref|XP_380536.1| hypothetical protein FG00360.1 [Gibberella zeae PH-1]
Length = 83
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 62/73 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK L+ EVTVELKND+ ++G L SVDQYLNIKL++ +VV++ KYPH+ SV+N
Sbjct: 1 MLFFSFFKTLIDHEVTVELKNDIQLKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNV 60
Query: 61 FIRGSVVRYVQLP 73
FIRGSVVRYV LP
Sbjct: 61 FIRGSVVRYVHLP 73
>gi|389584132|dbj|GAB66865.1| U6 snRNA-associated Sm-like protein LSm4 [Plasmodium cynomolgi
strain B]
Length = 95
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VTVELKNDL I G LHSVDQYLNIKL N V +KYPH+LS+++CF+RGSVVRYV LP
Sbjct: 9 VTVELKNDLQISGVLHSVDQYLNIKLTNVTVNHPEKYPHLLSIKSCFVRGSVVRYVFLPS 68
Query: 75 DGVDVDLLHDATRREAR 91
+DV+ LH R+EA+
Sbjct: 69 KEIDVEKLHHMCRKEAK 85
>gi|444721118|gb|ELW61871.1| U6 snRNA-associated Sm-like protein LSm2 [Tupaia chinensis]
Length = 92
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 56/68 (82%)
Query: 23 LAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLL 82
++I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD LL
Sbjct: 20 VSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLL 79
Query: 83 HDATRREA 90
DA R+EA
Sbjct: 80 QDAARKEA 87
>gi|328354299|emb|CCA40696.1| U6 snRNA-associated Sm-like protein LSm4 [Komagataella pastoris
CBS 7435]
Length = 102
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV-DQD-KYPHMLSVR 58
MLFFS FK L +++TVE KN++ I GTL SVDQYLN+KL+N + + D+D ++PH+ V+
Sbjct: 1 MLFFSLFKTLTDQQITVEFKNNVEITGTLKSVDQYLNLKLDNIQYISDEDNEFPHLFGVK 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
+ FIRGS +RY+ + P VD +LL DA+RREA
Sbjct: 61 SLFIRGSGIRYIHIDPSSVDTNLLQDASRREA 92
>gi|281352260|gb|EFB27844.1| hypothetical protein PANDA_021869 [Ailuropoda melanoleuca]
Length = 72
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 55/67 (82%)
Query: 24 AIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLH 83
+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD LL
Sbjct: 1 SICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQ 60
Query: 84 DATRREA 90
DA R+EA
Sbjct: 61 DAARKEA 67
>gi|392575894|gb|EIW69026.1| hypothetical protein TREMEDRAFT_31143, partial [Tremella
mesenterica DSM 1558]
Length = 97
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+FK L + +TVELKNDL I GTL SVDQ+LNI+L+ V D +++PHM++V+NCFIRGS
Sbjct: 1 FFKTLTDQVITVELKNDLCITGTLKSVDQFLNIRLDGITVEDPERHPHMMAVKNCFIRGS 60
Query: 66 VVRYVQLPPDGVDVDLLHDATRR 88
VVRYV++ VD LL DATRR
Sbjct: 61 VVRYVRMGARSVDTTLLEDATRR 83
>gi|239608423|gb|EEQ85410.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
ER-3]
Length = 116
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 62/76 (81%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKND+ IRGTL SVDQYLNIKL++ V+D D+YPH+ SV+N F+RGSVVRY+ LP
Sbjct: 33 VTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNIFVRGSVVRYIVLPQ 92
Query: 75 DGVDVDLLHDATRREA 90
VD LL DATRREA
Sbjct: 93 AEVDRGLLEDATRREA 108
>gi|47218886|emb|CAG05652.1| unnamed protein product [Tetraodon nigroviridis]
Length = 135
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
LF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSVR+C
Sbjct: 2 LFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVRDCI 61
Query: 62 IRGSVV 67
IRGSVV
Sbjct: 62 IRGSVV 67
>gi|149392340|gb|ABR25995.1| snrnp core sm protein sm-x5-like protein [Oryza sativa Indica
Group]
Length = 53
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/53 (92%), Positives = 51/53 (96%)
Query: 41 ENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
ENTRVVDQDKYPHMLSVRNCFIRGSVVRYV LP DGVD+D+LHDATRREARGG
Sbjct: 1 ENTRVVDQDKYPHMLSVRNCFIRGSVVRYVLLPQDGVDIDILHDATRREARGG 53
>gi|294933163|ref|XP_002780629.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
gi|239890563|gb|EER12424.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
Length = 102
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 70/96 (72%), Gaps = 5/96 (5%)
Query: 1 MLFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLFF +F+ LV G +VTVE+KND+ I GTL +VDQY N+KL+N + + ++YPH+LS+R
Sbjct: 1 MLFFDFFQSLVDSGAQVTVEMKNDVQITGTLQAVDQYFNVKLKNISINNPEQYPHLLSLR 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE-ARGG 93
NCFIRGSVVRY+ LP + L D R+E A+ G
Sbjct: 61 NCFIRGSVVRYIHLP--DMYTQGLTDQCRKELAQSG 94
>gi|339234819|ref|XP_003378964.1| putative U3 small nucleolar RNA-associated protein 15-like protein
[Trichinella spiralis]
gi|316978437|gb|EFV61424.1| putative U3 small nucleolar RNA-associated protein 15-like protein
[Trichinella spiralis]
Length = 381
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 59/79 (74%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+ RE E K ++ I G LHSVDQYLN+KL + + D +KYPH++SV+NCFIRGSVVRYV
Sbjct: 297 LAREKPGESKMEIDITGNLHSVDQYLNLKLNDVSISDPEKYPHLVSVKNCFIRGSVVRYV 356
Query: 71 QLPPDGVDVDLLHDATRRE 89
LP D VD LL DATR+E
Sbjct: 357 HLPADEVDTQLLQDATRKE 375
>gi|294874388|ref|XP_002766931.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
gi|239868306|gb|EEQ99648.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
Length = 103
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 6/97 (6%)
Query: 1 MLFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLFF +F++LV +VTVE+KND+ I GTL +VDQY N+KL+N + + ++YPH+LS+R
Sbjct: 1 MLFFDFFQNLVDSNAQVTVEMKNDVQITGTLPAVDQYFNVKLKNISINNPEQYPHLLSLR 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE--ARGG 93
NCFIRGSVVRYV LP + L D R+E A+ G
Sbjct: 61 NCFIRGSVVRYVHLP--DMYTQSLTDQCRKELAAQSG 95
>gi|299751432|ref|XP_002911642.1| small nuclear ribonucleoprotein LSM2 [Coprinopsis cinerea
okayama7#130]
gi|298409372|gb|EFI28148.1| small nuclear ribonucleoprotein LSM2 [Coprinopsis cinerea
okayama7#130]
Length = 73
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 55/66 (83%)
Query: 25 IRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHD 84
I G L SVDQ+LNI+L+N +V D+ ++PHM++V+NCFIRGSVVRYVQLP + VD LL D
Sbjct: 2 ITGVLKSVDQFLNIRLDNIKVSDEARHPHMMAVKNCFIRGSVVRYVQLPAEHVDTQLLED 61
Query: 85 ATRREA 90
ATRREA
Sbjct: 62 ATRREA 67
>gi|440294352|gb|ELP87369.1| hypothetical protein EIN_096260 [Entamoeba invadens IP1]
Length = 95
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 1/89 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+G+EVTVELKND I G L +VDQ LN+K++ + D +P ++ NC
Sbjct: 1 MLFYSFFKTLIGKEVTVELKNDAIITGKLLAVDQLLNVKMDTLK-SDNALFPQFQTLTNC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRG+ +RY+ + +D+ LLHDAT E
Sbjct: 60 FIRGNTIRYISMSESLIDIQLLHDATLLE 88
>gi|294881769|ref|XP_002769488.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
gi|239872947|gb|EER02206.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
Length = 83
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 59/74 (79%), Gaps = 2/74 (2%)
Query: 1 MLFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
MLFF +F++LV +VTVE+KND+ I GTL +VDQY N+KL+N + + ++YPH+LS+R
Sbjct: 1 MLFFDFFQNLVDSNAQVTVEMKNDVQITGTLQAVDQYFNVKLKNISINNPEQYPHLLSLR 60
Query: 59 NCFIRGSVVRYVQL 72
NCFIRGSVVR + +
Sbjct: 61 NCFIRGSVVRSMMM 74
>gi|403373349|gb|EJY86592.1| U6 snRNA-associated Sm-like protein LSm4, putative [Oxytricha
trifallax]
Length = 99
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Query: 2 LFFSYFKDLVGRE--VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
+F S+F+ L + VT+ELKNDL I+GTL SVD+ LNI+L N ++ D+ P++LS +N
Sbjct: 1 MFQSFFRQLADKNQRVTLELKNDLKIQGTLVSVDESLNIQLTNMKIADEINNPYLLSCKN 60
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRG+V+RYV L VD + L +A ++EA+
Sbjct: 61 GFIRGNVIRYVHLSKKEVDTEPLTEACKKEAK 92
>gi|254573542|ref|XP_002493880.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238033679|emb|CAY71701.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 101
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%), Gaps = 6/90 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV-DQD-KYPHMLSVR 58
MLFFS FK L ++ KN++ I GTL SVDQYLN+KL+N + + D+D ++PH+ V+
Sbjct: 1 MLFFSLFKTLTDQQ----FKNNVEITGTLKSVDQYLNLKLDNIQYISDEDNEFPHLFGVK 56
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRR 88
+ FIRGS +RY+ + P VD +LL DA+RR
Sbjct: 57 SLFIRGSGIRYIHIDPSSVDTNLLQDASRR 86
>gi|7861942|gb|AAF70450.1|AF210645_1 Smx5, partial [Danio rerio]
Length = 53
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 44/51 (86%)
Query: 28 TLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVD 78
TLHSVDQYLNIKL + V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD
Sbjct: 1 TLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 51
>gi|449015531|dbj|BAM78933.1| snRNP core Sm-like protein SmX5 [Cyanidioschyzon merolae strain
10D]
Length = 101
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR-N 59
M F + + L+G ++TVELKNDL+IRG L +VDQYLN++L +V P + + +
Sbjct: 1 MFFTAILRTLIGEDITVELKNDLSIRGRLEAVDQYLNVRLAQVQVHTAAAPPVLQLLHGS 60
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
C +RGS +RY+ LP + VD +LL +ATRR A
Sbjct: 61 CTVRGSCIRYIHLPVEKVDTELLQEATRRVA 91
>gi|123433684|ref|XP_001308656.1| Sm protein [Trichomonas vaginalis G3]
gi|121890347|gb|EAX95726.1| Sm protein [Trichomonas vaginalis G3]
Length = 94
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 58/89 (65%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF F+ L G+ +TV +KN + I GTL S+D + NIKL NT D + ++
Sbjct: 1 MLFLHVFRTLQGKRITVHVKNGIVIEGTLQSIDHFYNIKLINTETKDAGNLNMVSTLSTA 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
+IRG+ V Y++LP D +D+++LHDATRR+
Sbjct: 61 YIRGTSVLYIELPKDEIDLNILHDATRRQ 89
>gi|148694761|gb|EDL26708.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_f [Mus musculus]
Length = 75
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSV 57
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHM +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMFPI 57
>gi|149028024|gb|EDL83475.1| rCG38360, isoform CRA_a [Rattus norvegicus]
Length = 60
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSV 57
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHM +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMFPI 57
>gi|390358916|ref|XP_003729363.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Strongylocentrotus purpuratus]
Length = 83
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 48/56 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS 56
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQ+LNIKL + V DQ++YPHM S
Sbjct: 5 MLFYSFFKSLVGKDVIVELKNDLSIGGTLHSVDQFLNIKLTDISVTDQERYPHMES 60
>gi|399219015|emb|CCF75902.1| unnamed protein product [Babesia microti strain RI]
Length = 125
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 18/92 (19%)
Query: 2 LFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
FF++F+ LV + +VTVELKNDL I GTLHSVDQYLNIKL ++N
Sbjct: 48 FFFNFFQTLVEKNAQVTVELKNDLEITGTLHSVDQYLNIKL----------------IKN 91
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
CFIRGSVVRYV + +D D L D R+ +
Sbjct: 92 CFIRGSVVRYVYINKKDIDFDELQDLCRKSTK 123
>gi|84996507|ref|XP_952975.1| U6 snRNP protein Lsm2 [Theileria annulata strain Ankara]
gi|65303972|emb|CAI76351.1| U6 snRNP protein Lsm2, putative [Theileria annulata]
Length = 112
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM-----LSVR 58
FSYF +NDL I G LHSVDQYLNIKL N D +YPH+ LSV
Sbjct: 12 FSYFIIFFKVWSRRMRRNDLQISGKLHSVDQYLNIKLTNVTANDTQRYPHLVLIYKLSVV 71
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
NCF+RGSVVRYV P ++ + L + RR+A
Sbjct: 72 NCFVRGSVVRYVFFNPSDINTEELQELCRRQA 103
>gi|324021709|ref|NP_001191203.1| U6 snRNA-associated Sm-like protein LSm2 isoform 4 [Mus musculus]
gi|148694759|gb|EDL26706.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_d [Mus musculus]
Length = 74
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 45/54 (83%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM 54
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPH
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHF 54
>gi|118482885|gb|ABK93357.1| unknown [Populus trichocarpa]
Length = 54
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/45 (86%), Positives = 41/45 (91%)
Query: 49 DKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
D+ LSVRNCFIRGSVVRYVQLPP+GVDVDLLHDATRREARGG
Sbjct: 10 DRSDAQLSVRNCFIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 54
>gi|67901204|ref|XP_680858.1| hypothetical protein AN7589.2 [Aspergillus nidulans FGSC A4]
gi|40742979|gb|EAA62169.1| hypothetical protein AN7589.2 [Aspergillus nidulans FGSC A4]
Length = 2412
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
+ F+ L + VT+ELKND+ IRGTL SVDQYLNIKL++ V+D DKYPH+ SV+N FIRG
Sbjct: 1000 ALFQTLTNQVVTIELKNDIRIRGTLKSVDQYLNIKLDDIDVLDLDKYPHLSSVKNMFIRG 1059
Query: 65 SVVR 68
SVVR
Sbjct: 1060 SVVR 1063
>gi|300123308|emb|CBK24581.2| unnamed protein product [Blastocystis hominis]
Length = 140
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 17/98 (17%)
Query: 2 LFFSYFKDLVGRE--VTVELKNDLAIRGT---------------LHSVDQYLNIKLENTR 44
+F S F L G VT+ELKND+ +RGT + SVDQ+LN KL N
Sbjct: 5 IFLSLFNVLKGNRAVVTIELKNDVQLRGTYPFALLSSFLSFICSIDSVDQFLNFKLGNVE 64
Query: 45 VVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLL 82
VV++D++PH++ + +CF+RGSV+RY+ L ++ DLL
Sbjct: 65 VVNKDRFPHLIPMTSCFVRGSVIRYIHLTKADINEDLL 102
>gi|195637574|gb|ACG38255.1| hypothetical protein [Zea mays]
Length = 40
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 38/40 (95%)
Query: 54 MLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
MLSVRNCFIRGSVVRYV LP DGVD+D+LHDATRREARGG
Sbjct: 1 MLSVRNCFIRGSVVRYVLLPQDGVDIDILHDATRREARGG 40
>gi|452821896|gb|EME28921.1| U6 snRNA-associated Sm-like protein LSm2 [Galdieria sulphuraria]
Length = 84
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS 56
MLFFS+FK +G+ VTVELKND+ IRG +HSVDQYLNIKLE+ +++ + P ++
Sbjct: 1 MLFFSFFKTFIGKTVTVELKNDVIIRGKVHSVDQYLNIKLEDIEILNVETCPQLVG 56
>gi|169806072|ref|XP_001827781.1| U6 snRNA-associated Sm-like protein LSm2 [Enterocytozoon bieneusi
H348]
gi|263432000|sp|A9CTE0.1|LSM2_ENTBH RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm2
gi|161779067|gb|EDQ31093.1| U6 snRNA-associated Sm-like protein LSm2 [Enterocytozoon bieneusi
H348]
Length = 97
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLS 56
MLFF YFK + E+ V LKND++I G L +VD +LNIK+EN + +++ + +
Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITN 60
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVDLLHDATR 87
++ C IRGS ++ V+L +G++ ++ +ATR
Sbjct: 61 IQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90
>gi|392921513|ref|NP_001256512.1| Protein GUT-2, isoform b [Caenorhabditis elegans]
gi|306438324|emb|CBW48439.1| Protein GUT-2, isoform b [Caenorhabditis elegans]
Length = 60
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 38 IKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
+KL + V D +++PHM+SV+NCFIRGSVVRYVQLP D VD LL D+ R+E
Sbjct: 1 MKLTDITVSDPERFPHMVSVKNCFIRGSVVRYVQLPSDQVDTQLLADSCRKE 52
>gi|145513718|ref|XP_001442770.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410123|emb|CAK75373.1| unnamed protein product [Paramecium tetraurelia]
Length = 100
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 2 LFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
F +YF+ L+ R VT+ELKN L I+G + VD LN L + V D K P ++++RN
Sbjct: 5 FFQTYFRGLIERCVSVTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPLKQPQLMTLRN 64
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGS V+YV +P + + ++L A + E +
Sbjct: 65 SFIRGSTVKYVHIPQEELQEEVLISACKNEVK 96
>gi|402467766|gb|EJW03016.1| hypothetical protein EDEG_02598 [Edhazardia aedis USNM 41457]
Length = 97
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM--LSVR 58
MLF+SYF +G ++ +ELKNDL IRG L SVD +LN KL + +D + M ++
Sbjct: 1 MLFYSYFATKIGNKIEIELKNDLVIRGILLSVDTFLNFKLTDIEKIDAKRGWEMGLGDLK 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
C IRGS V++ ++ + D+ L +A+R A
Sbjct: 61 TCSIRGSCVKFARIGYEIDDLKRLEEASRYRA 92
>gi|145533499|ref|XP_001452494.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420193|emb|CAK85097.1| unnamed protein product [Paramecium tetraurelia]
Length = 100
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 2 LFFSYFKDLVGR--EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
F +YF+ L+ R VT+ELKN L I+G + VD LN L + V D K P +++++N
Sbjct: 5 FFQTYFRGLIERCVSVTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPVKQPQLITLKN 64
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGS V+YV +P + + ++L A + E +
Sbjct: 65 SFIRGSTVKYVHIPQEELQEEVLISACKNEVK 96
>gi|429966489|gb|ELA48486.1| hypothetical protein VCUG_00095 [Vavraia culicis 'floridensis']
Length = 108
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M+F+ FK + + +TVELKN L I G L S D +LNIKL + + D + + + V
Sbjct: 1 MIFYMLFKKNINKNITVELKNGLVISGKLLSCDVFLNIKLSDVAIEDLENFKGLSGVATL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATR 87
IRGS V+Y++L D + L D TR
Sbjct: 61 SIRGSCVKYIKLEKDENSIASLLDTTR 87
>gi|71019431|ref|XP_759946.1| hypothetical protein UM03799.1 [Ustilago maydis 521]
gi|46099492|gb|EAK84725.1| hypothetical protein UM03799.1 [Ustilago maydis 521]
Length = 171
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 31/100 (31%)
Query: 21 NDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS------------------------ 56
ND A + D++LN K++N RV+D+ K+PHM+S
Sbjct: 67 NDFATTA-YNPYDRFLNFKIDNIRVLDEAKHPHMVSLVTSPMRTLCWIAARTNCSSPSSL 125
Query: 57 ------VRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
V++ FIRGSVVRYV +P VD LL DATRREA
Sbjct: 126 LSAQMAVKSAFIRGSVVRYVHIPAAAVDTQLLEDATRREA 165
>gi|378755973|gb|EHY65998.1| hypothetical protein NERG_00694 [Nematocida sp. 1 ERTm2]
Length = 94
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M+ + FK L+ + V +ELKN L I G L +D + N KL +T +D P + + N
Sbjct: 1 MVMTTLFKTLINKRVRIELKNSLKITGLLEDIDTFFNFKLRDTDKID---IPFLRN-NNI 56
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS ++ + + D V+V L DATR+
Sbjct: 57 FIRGSAIKEIWMSEDDVNVKRLEDATRK 84
>gi|307200581|gb|EFN80722.1| U6 snRNA-associated Sm-like protein LSm2 [Harpegnathos saltator]
Length = 42
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/37 (78%), Positives = 31/37 (83%)
Query: 54 MLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
MLSV+NCFIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 1 MLSVKNCFIRGSVVRYVQLPGDEVDTQLLQDAARKEA 37
>gi|440494118|gb|ELQ76529.1| putative snRNP core protein [Trachipleistophora hominis]
Length = 119
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M+F+ +F+ + + + VELKN L I G L S D +LNIKL + V D + Y + V
Sbjct: 12 MIFYMFFQKNINKNIIVELKNGLVISGKLLSCDIFLNIKLCDVTVKDLENYRGLSGVSTL 71
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATR 87
+RGS V+YV+L D + L + TR
Sbjct: 72 SVRGSCVKYVKLEKDEDLIASLLETTR 98
>gi|387594039|gb|EIJ89063.1| hypothetical protein NEQG_00882 [Nematocida parisii ERTm3]
gi|387595758|gb|EIJ93381.1| hypothetical protein NEPG_01723 [Nematocida parisii ERTm1]
Length = 94
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M+ + FK L+ + V +ELK L I G L +D + N KL++T ++ P L+ N
Sbjct: 1 MVVTTLFKTLINKRVRIELKTALQITGVLEDIDTFFNFKLKDTEKIN---IP-FLTKNNV 56
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRR 88
FIRGS ++ + + + V+V L D TR+
Sbjct: 57 FIRGSAIKEIWIDEEYVNVKKLEDTTRK 84
>gi|226486682|emb|CAX74418.1| U6 snRNA-associated Sm-like protein LSm2 [Schistosoma japonicum]
Length = 45
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 54 MLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
MLSV+NCFIRGS+VRYVQLP D D L +A+R+EA G
Sbjct: 1 MLSVKNCFIRGSIVRYVQLPADECDTIELQNASRKEATVG 40
>gi|405123105|gb|AFR97870.1| hypothetical protein CNAG_01666 [Cryptococcus neoformans var.
grubii H99]
Length = 41
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 55 LSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
++V+NCFIRGSVVRYV++ VD LL DATRREA+ G
Sbjct: 1 MAVKNCFIRGSVVRYVRMAARSVDTTLLEDATRREAKEG 39
>gi|85014477|ref|XP_955734.1| U6 snRNA-associated ribonucleoprotein [Encephalitozoon cuniculi
GB-M1]
gi|74644145|sp|Q8SQK1.1|LSM2_ENCCU RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm2
gi|19171428|emb|CAD27153.1| U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|449330080|gb|AGE96345.1| U6 snRNA-associated ribonucleoprotein [Encephalitozoon cuniculi]
Length = 94
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+ +F+ +G V+V LK + + G L +D YLN+ L + R++ +P + S+ C
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSS--HPGLSSISVC 58
Query: 61 FIRGSVVRYVQLPPDG 76
IRGS ++Y+ + D
Sbjct: 59 SIRGSSIKYILVDKDA 74
>gi|303390881|ref|XP_003073671.1| U6 snRNA-associated ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
gi|303302818|gb|ADM12311.1| U6 snRNA-associated ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
Length = 94
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+ +FK +G+ + V LK + + G L+S+D YLN+ LE ++ +P + C
Sbjct: 1 MLFYEFFKSNIGKRIFVMLKAGVYVSGVLNSIDPYLNLNLEEVEILSD--HPGLSGTSLC 58
Query: 61 FIRGSVVRYV 70
IRGS ++Y+
Sbjct: 59 SIRGSSIKYI 68
>gi|183230265|ref|XP_654174.2| U6 snRNA-associated Sm-like protein LSm2 [Entamoeba histolytica
HM-1:IMSS]
gi|169802999|gb|EAL48785.2| U6 snRNA-associated Sm-like protein LSm2, putative [Entamoeba
histolytica HM-1:IMSS]
gi|407037431|gb|EKE38638.1| U6 snRNA-associated Sm family protein LSm2, putative [Entamoeba
nuttalli P19]
gi|449704671|gb|EMD44870.1| U6 snrnaassociated Sm family LSm2 protein, putative [Entamoeba
histolytica KU27]
Length = 62
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 36 LNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
LNIKL N + D +P + ++ +CFIRG+ +RYV + + +DV LLHDAT E
Sbjct: 2 LNIKLNNLKC-DATLFPQIQTMTDCFIRGNTIRYVSMAENNIDVQLLHDATLLE 54
>gi|159109501|ref|XP_001705015.1| U6 snRNA-associated Sm-like protein LSm2, putative [Giardia
lamblia ATCC 50803]
gi|157433092|gb|EDO77341.1| U6 snRNA-associated Sm-like protein LSm2, putative [Giardia
lamblia ATCC 50803]
Length = 107
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRN 59
ML+ ++ LVGR+V VELK+ + + G L + D + N+ L+N + D + H+ R
Sbjct: 1 MLYLTFLSKLVGRKVYVELKSGMQMHGVLLASDNFANLSLDNPVIYGSDISFTHVSGGRR 60
Query: 60 CFIRGSVVRYVQL 72
FIRGS ++++ L
Sbjct: 61 VFIRGSAIQFLYL 73
>gi|358331639|dbj|GAA50416.1| U6 snRNA-associated Sm-like protein LSm2 [Clonorchis sinensis]
Length = 343
Score = 54.3 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 54 MLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
+LSV+NCFIRGS+VRYVQLP D D L +A+R+EA G
Sbjct: 299 VLSVKNCFIRGSIVRYVQLPADECDTVELQNASRKEATLG 338
>gi|396082187|gb|AFN83798.1| U6 snRNA-associated ribonucleoprotein [Encephalitozoon romaleae
SJ-2008]
Length = 94
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+ +F+ +G+ + V LK + + G L+S+D YLN+ L +++ +P + S+ C
Sbjct: 1 MLFYEFFRSNIGKRIFVMLKAGVYVSGVLNSIDPYLNLNLLKVKILSN--HPGLDSISLC 58
Query: 61 FIRGSVVRYVQLPPD 75
IRGS ++Y+ D
Sbjct: 59 SIRGSSIKYILADKD 73
>gi|253745026|gb|EET01141.1| U6 snRNA-associated Sm-like protein LSm2, putative [Giardia
intestinalis ATCC 50581]
Length = 110
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRN 59
ML+ ++ LVGR++ VELK+ + + G L + D + N+ L+N + + + H+ R
Sbjct: 1 MLYLTFLSKLVGRKIHVELKSGMQMHGVLLASDNFANLSLDNPVICGPNISFTHVSGGRR 60
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGS ++++ L G D L A ++R
Sbjct: 61 VFIRGSSIQFLYLDDVGDDESLSLRALANDSR 92
>gi|401828689|ref|XP_003888058.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|392999132|gb|AFM99077.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 94
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+ +F+ +G+ + V LK + + G L ++D YLN+ L ++ +P + S+ C
Sbjct: 1 MLFYEFFRSNIGKRIFVMLKAGVYVSGVLSNIDPYLNLSLLEVNILSN--HPGLDSISVC 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATR 87
IRGS ++YV + D + ++ +R
Sbjct: 59 SIRGSSIKYVLVDKDSTLLQGVNAGSR 85
>gi|308158887|gb|EFO61447.1| U6 snRNA-associated Sm-like protein LSm2, putative [Giardia
lamblia P15]
Length = 107
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRN 59
ML+ ++ LVGR++ VELK+ + I G L + D + N+ L+N + + + H+ S +
Sbjct: 1 MLYLTFLSKLVGRKIHVELKSGMQIHGILLASDNFANLSLDNPVIYGSNITFTHVSSGQR 60
Query: 60 CFIRGSVVRYVQL 72
FIRGS ++++ L
Sbjct: 61 IFIRGSAIQFLYL 73
>gi|427783433|gb|JAA57168.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 139
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR+ T+EL+N+L++ GT+ SVD ++N+ L + VV + S F++G
Sbjct: 18 LQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDATVVGPNGEETYASF---FVQGRQ 74
Query: 67 VRYVQLPPD 75
VRY+ +P D
Sbjct: 75 VRYIHIPDD 83
>gi|429962791|gb|ELA42335.1| hypothetical protein VICG_00735 [Vittaforma corneae ATCC 50505]
Length = 92
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M+F YFK + + VT+ LKN++ I G L++VD +LN+++ ++ L + C
Sbjct: 1 MIFLEYFKRHLSKTVTIVLKNEMKITGILNNVDHFLNLQVTAAKIEHDGMGLQKLDL--C 58
Query: 61 FIRGSVVRYVQLPPD 75
IRGS V++V+L +
Sbjct: 59 SIRGSSVKFVELEKN 73
>gi|449016184|dbj|BAM79586.1| similar to U6 snRNA-associated Sm-like protein [Cyanidioschyzon
merolae strain 10D]
gi|449020060|dbj|BAM83462.1| similar to U6 snRNA-associated Sm-like protein [Cyanidioschyzon
merolae strain 10D]
Length = 97
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + VG++VTVELKN G L VD ++N+ LE+ RV + SV
Sbjct: 1 MLPVGLVRGAVGQQVTVELKNGKHCTGVLTGVDPWMNLNLESARVTGASRAATTDSVEQA 60
Query: 61 ------FIRGSVVRYVQLP 73
IRG++++ VQLP
Sbjct: 61 ASYAALHIRGTMIKLVQLP 79
>gi|291408786|ref|XP_002720696.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Oryctolagus
cuniculus]
Length = 123
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GRE TV+L+++ G + +VD ++NI+L T+V D++ H + + + F+ G
Sbjct: 21 LQGLQGRETTVDLRDESVAHGRIDNVDAFMNIRL--TKVTYTDRWGHQVQLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|290988841|ref|XP_002677099.1| predicted protein [Naegleria gruberi]
gi|284090705|gb|EFC44355.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L G VT+ELKN I GT+ VD +N L+ ++ + K P L + + +RGS
Sbjct: 2 FLMKLSGESVTIELKNGTVIAGTIVGVDMSMNTHLKAVKMTLKGKNP--LPLEHMSVRGS 59
Query: 66 VVRYVQLPPDGVDVD-LLHDAT 86
+RYV L P+ +++D LL D T
Sbjct: 60 NIRYVIL-PETINLDNLLQDTT 80
>gi|20270251|ref|NP_620046.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|253795523|ref|NP_001156738.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|52783143|sp|Q8QZX5.1|LSM10_MOUSE RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|19354497|gb|AAH24543.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|20071449|gb|AAH26476.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|74228609|dbj|BAE25378.1| unnamed protein product [Mus musculus]
gi|148698363|gb|EDL30310.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
Length = 122
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PDGVD+
Sbjct: 79 VRYVHI-PDGVDI 90
>gi|291231092|ref|XP_002735494.1| PREDICTED: LSM10, U7 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 114
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ +EL+N+ + G + SVD Y+N+ + + V+ D +LS N F++G +
Sbjct: 18 LQALTGKSTVIELRNESTVTGVIDSVDAYMNVFMSDVEFVNADGQVMILS--NFFVQGKM 75
Query: 67 VRYVQLPPD 75
+R+VQ+P +
Sbjct: 76 IRFVQIPDE 84
>gi|66807347|ref|XP_637396.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|60465817|gb|EAL63891.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 177
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + G ++ VELKN G L + D ++NI L+N D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKF---WKIQ 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRR 88
+C+IRG+ ++Y+ +P + +D+ + T R
Sbjct: 58 SCYIRGNTIKYISVPDEIIDLVAEEEQTLR 87
>gi|198436639|ref|XP_002128141.1| PREDICTED: similar to GL19160 isoform 1 [Ciona intestinalis]
Length = 127
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K V + VELKN G L S D ++NI L +D H + C
Sbjct: 1 MLPLSLLKTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG-DHFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVDV 79
+IRGS ++Y+++P + +D+
Sbjct: 60 YIRGSTIKYLRIPDEVIDM 78
>gi|168021867|ref|XP_001763462.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685255|gb|EDQ71651.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 121
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ L+G E+ VEL+NDL+IRG L D +N+ +++ V D + L + F+
Sbjct: 13 LVCVIQALMGLELLVELRNDLSIRGILDDCDNAMNVIIKDATVEDVEGVQKQLPL--VFL 70
Query: 63 RGSVVRYVQLPPDGVDV 79
RGS +R+V + PD VD+
Sbjct: 71 RGSNIRFVHI-PDNVDI 86
>gi|10720074|sp|Q9QXA5.1|LSM4_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|6692064|emb|CAB65729.1| Lsm4 protein [Mus musculus]
Length = 137
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + +A + RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM-VREEAAKGRGRGG 91
>gi|281201415|gb|EFA75627.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 157
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + G ++ VELKN G L + D ++NI L+N D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETFNGYLVNCDNWMNINLKNVIRTSKDSDKF---WKLQ 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
+C+IRG+ ++Y+ +P + +D+
Sbjct: 58 SCYIRGNTIKYISVPDEIIDM 78
>gi|330798959|ref|XP_003287516.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
gi|325082462|gb|EGC35943.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
Length = 168
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + G ++ VELKN G L + D ++NI L N D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGYLINCDNWMNINLRNVIRTSKDSDKF---WKIQ 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
+C+IRG+ ++Y+ +P + +D+
Sbjct: 58 SCYIRGNTIKYISVPDEIIDL 78
>gi|146411987|ref|XP_001481965.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
gi|146393472|gb|EDK41630.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
Length = 121
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F G+ +TVELKN ++ GTL S +N+ L+N ++V + P +L N I
Sbjct: 6 FLMNMPSSTGQPITVELKNGTSVSGTLLSCTPSMNLSLKNIKLVQPHQDPQLLQFMN--I 63
Query: 63 RGSVVRYVQLPPD 75
RG+ +R + LP D
Sbjct: 64 RGNQIRQIILPDD 76
>gi|403218061|emb|CCK72553.1| hypothetical protein KNAG_0K01890 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + K L +VTVELKN + GT+ +V +N+ L + P + ++N
Sbjct: 1 MALVQFLKKLRNEQVTVELKNGSTVWGTVEAVSPQMNVTLSRATLTLATTGPSPMVIQNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHD-----ATRREARGG 93
+RG+ +R + L P+ +++D LL D A RR R G
Sbjct: 61 NVRGNTIRQILL-PESLNLDALLVDPQEVAALRRRGRVG 98
>gi|313241313|emb|CBY33589.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K V + VELKN G L + D ++N++L +D H + C
Sbjct: 1 MLPLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDG-DHFWRMNEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
++RGS ++Y+++P + +D+ + R +A
Sbjct: 60 YVRGSTIKYLRIPDEVIDMVKEENTARMKA 89
>gi|313236950|emb|CBY12197.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K V + VELKN G L + D ++N++L +D H + C
Sbjct: 1 MLPLSLLKTAVNHPMLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDG-DHFWRMNEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
++RGS ++Y+++P + +D+ + R +A
Sbjct: 60 YVRGSTIKYLRIPDEVIDMVKEENTARMKA 89
>gi|157822899|ref|NP_001102446.1| U7 snRNA-associated Sm-like protein LSm10 [Rattus norvegicus]
gi|149023943|gb|EDL80440.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023944|gb|EDL80441.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023945|gb|EDL80442.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|187469116|gb|AAI66902.1| Lsm10 protein [Rattus norvegicus]
Length = 122
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PDGV++
Sbjct: 79 VRYVHI-PDGVNI 90
>gi|326432761|gb|EGD78331.1| hypothetical protein PTSG_09397 [Salpingoeca sp. ATCC 50818]
Length = 115
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + V + VELKN + G L + D Y+NI L + +D ++ C
Sbjct: 1 MLPLSLIRAAVNHPMLVELKNGESYNGHLVNCDHYMNIILRGVTLTSKDG-DRFWKLKEC 59
Query: 61 FIRGSVVRYVQLPPDGVDV 79
+IRGS ++Y++LP + +D+
Sbjct: 60 YIRGSTIKYLRLPDEIIDM 78
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML + K G + VELKN GTL S D ++N+ L+ D D++ M
Sbjct: 1 MLPLTLLKTSCGHPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C++RG+ ++YV +P + +DV
Sbjct: 59 -CYVRGNTIKYVCVPDEVLDV 78
>gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis
gaditana CCMP526]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I+GT+ VD +N L+N +V + K P +S +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNP--VSYESL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARGG 93
IRG+ +RY L PD +++D L+ D + + + G
Sbjct: 59 SIRGNNIRYYIL-PDALNLDALLVDDGPKNKLKPG 92
>gi|46105460|ref|XP_380534.1| hypothetical protein FG00358.1 [Gibberella zeae PH-1]
gi|408400659|gb|EKJ79736.1| hypothetical protein FPSE_00016 [Fusarium pseudograminearum
CS3096]
Length = 126
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN I GT+ SV +N L N ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|224003195|ref|XP_002291269.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973045|gb|EED91376.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 120
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L +VT+ELKN I GT+ VD +N L+ ++ + K P +S
Sbjct: 1 MKLVKFLQKLNREQVTIELKNGTVISGTVVGVDATMNAHLKKAKLTAKGKNP--VSYATL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATR 87
+RGS VR L PDG+++D L+ DA +
Sbjct: 59 SVRGSTVRSWIL-PDGLNLDALLVEDAPK 86
>gi|156846025|ref|XP_001645901.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156116571|gb|EDO18043.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 193
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD------KYPHM 54
ML + G+++T+ELKN I+G L +VD ++N+ L + D D + P
Sbjct: 1 MLPLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEG 60
Query: 55 LSVRNCFIRGSVVRYVQLPPD 75
LSV ++RG+ ++Y+ L D
Sbjct: 61 LSVPEIYLRGTYIKYINLQDD 81
>gi|354477407|ref|XP_003500912.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Cricetulus griseus]
gi|344245005|gb|EGW01109.1| U7 snRNA-associated Sm-like protein LSm10 [Cricetulus griseus]
Length = 122
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ + RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQITTVDLRDESSARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|354496952|ref|XP_003510587.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like,
partial [Cricetulus griseus]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L G+ TV+L+++ + RG + +VD ++NI+L N V D++ H + + + F+ G VRY
Sbjct: 4 LQGQITTVDLQDESSARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRNVRY 61
Query: 70 VQLPPD 75
V +P D
Sbjct: 62 VHIPDD 67
>gi|321468738|gb|EFX79721.1| hypothetical protein DAPPUDRAFT_304272 [Daphnia pulex]
Length = 153
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV-DQDKYPHMLSVRNCFIRGS 65
+ L GR VEL+N++A++G + VD ++N+ L+N V + D++ H F++
Sbjct: 21 LQALEGRVAVVELRNEMAVKGLISQVDGFMNVSLQNATVQGNDDQHYHF---EEFFVKAR 77
Query: 66 VVRYVQLPPD 75
+RYVQ+P D
Sbjct: 78 NIRYVQIPED 87
>gi|41152340|ref|NP_956990.1| U6 snRNA-associated Sm-like protein LSm4 [Danio rerio]
gi|37589787|gb|AAH59435.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
gi|38328316|gb|AAH62285.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Danio rerio]
Length = 143
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGG 92
>gi|209735614|gb|ACI68676.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 150
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGG 92
>gi|226372266|gb|ACO51758.1| U6 snRNA-associated Sm-like protein LSm4 [Rana catesbeiana]
Length = 140
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGG 92
>gi|209733716|gb|ACI67727.1| U6 snRNA-associated Sm-like protein LSm4 [Salmo salar]
Length = 147
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGG 92
>gi|348523129|ref|XP_003449076.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Oreochromis niloticus]
Length = 147
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGG 92
>gi|147902804|ref|NP_001088454.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|54311207|gb|AAH84779.1| LOC495318 protein [Xenopus laevis]
Length = 138
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGG 92
>gi|45361593|ref|NP_989371.1| LSM4 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|39849973|gb|AAH64199.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|52078460|gb|AAH82491.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
Length = 138
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEEVMSKGRGRGG 92
>gi|301779577|ref|XP_002925209.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Ailuropoda melanoleuca]
gi|281344415|gb|EFB19999.1| hypothetical protein PANDA_014655 [Ailuropoda melanoleuca]
Length = 123
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H +++ + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHRVALDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|149694668|ref|XP_001499097.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Equus
caballus]
Length = 123
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML + K GR + VELKN GTL S D ++N+ L+ D D++ M
Sbjct: 659 MLPLTLLKTSCGRPMLVELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRM---E 715
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C++RG+ ++YV +P + +D
Sbjct: 716 ECYVRGNTIKYVCVPDEVLD 735
>gi|355700134|gb|AES01351.1| LSM10, U7 small nuclear RNA associated [Mustela putorius furo]
Length = 122
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|115725270|ref|XP_001200318.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
gi|115896565|ref|XP_001200071.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
Length = 124
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRNCFIRGS 65
+ +VGR TVEL+N+ + G + VD ++N+ + V+ D + HM S+ FI+ S
Sbjct: 21 LRAVVGRITTVELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEKTHMDSI---FIQAS 77
Query: 66 VVRYVQLPPD 75
+VRYVQ+P D
Sbjct: 78 LVRYVQIPDD 87
>gi|260793240|ref|XP_002591620.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
gi|229276829|gb|EEN47631.1| hypothetical protein BRAFLDRAFT_281075 [Branchiostoma floridae]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L + D ++NIKL + D D++ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLEACDNWMNIKLRDVICTSRDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus]
Length = 138
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN--TRVVDQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L +D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSLDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P D + D R EA G
Sbjct: 59 -CYIRGSTIKYLRIP------DEIIDMVREEAAKG 86
>gi|57096594|ref|XP_532561.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Canis lupus
familiaris]
Length = 123
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|325188130|emb|CCA22672.1| small nuclear ribonucleoprotein Sm D1 putative [Albugo laibachii
Nc14]
Length = 114
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P L
Sbjct: 1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTAKGKNPQTLDT--L 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREARGG 93
IRG+ +RY LP +DV L+ D R + + G
Sbjct: 59 SIRGNNIRYYILPDSLNLDVLLIDDTPREKVKAG 92
>gi|254574234|ref|XP_002494226.1| hypothetical protein [Komagataella pastoris GS115]
gi|238034025|emb|CAY72047.1| Hypothetical protein PAS_chr4_0781 [Komagataella pastoris GS115]
gi|328353953|emb|CCA40350.1| Probable small nuclear ribonucleoprotein Sm D1 [Komagataella
pastoris CBS 7435]
Length = 115
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L+ +V VELKN + GT+ SV +NI L+N ++ +++ P L N
Sbjct: 1 MKLVRFLMKLISEQVQVELKNGTIVSGTIISVTPSMNINLKNVKMTVRNRNPVSLEFIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDA 85
IRG+ VR V L PD +++D LL D+
Sbjct: 60 -IRGNNVRIVIL-PDNLNLDSLLTDS 83
>gi|357619535|gb|EHJ72069.1| hypothetical protein KGM_17625 [Danaus plexippus]
Length = 138
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++P + +D++ + T+ ++RG
Sbjct: 59 -CYIRGSTIKYLRIPDE--VIDMVKEETQVKSRG 89
>gi|67615310|ref|XP_667428.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis
TU502]
gi|54658569|gb|EAL37203.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis]
Length = 126
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L+ V +ELKN I+GT+ SVD +N L+N ++ + + P +S+
Sbjct: 1 MKLIRFLMKLINNSVVIELKNGTIIQGTIVSVDMSMNTYLKNVKMSVKHRNP--VSLSQI 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRRE 89
+RG+ +RY L PD + +D LL D T ++
Sbjct: 59 TVRGNTIRYFIL-PDSLPLDALLIDDTPKQ 87
>gi|402589501|gb|EJW83433.1| small nuclear ribonucleoprotein Sm D1 [Wuchereria bancrofti]
Length = 123
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L ++ +++ P +S+ +
Sbjct: 1 MKLVRFLMKLAHESVTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREP--VSLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL---HDATRREARGG 93
IRG+ +RY+ L PD + +D L + ++ ARGG
Sbjct: 59 SIRGNNIRYIIL-PDTIPLDTLLVDDEPRKKPARGG 93
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G+ + VELKN G L + D ++NIKL++ D DK+ M+ V
Sbjct: 1 MLPLSLLKTAQGQPMLVELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEV- 59
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
++RG+ ++YV +P + +D+ D ++ +
Sbjct: 60 --YVRGNSIKYVTIPEEVLDMVQEEDLSKEK 88
>gi|432854576|ref|XP_004067969.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Oryzias
latipes]
Length = 144
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKDEVVSKGRGRGG 92
>gi|70917773|ref|XP_732969.1| u6 snRNA-associated sm-like protein Lsm2 [Plasmodium chabaudi
chabaudi]
gi|56504331|emb|CAH75543.1| u6 snRNA-associated sm-like protein Lsm2, putative [Plasmodium
chabaudi chabaudi]
Length = 48
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 55 LSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
LS+++CF+RGSVVRYV LP + V++D L R+EA+
Sbjct: 1 LSIKSCFVRGSVVRYVFLPSNEVNIDKLRHMCRQEAK 37
>gi|312077154|ref|XP_003141178.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
gi|307763657|gb|EFO22891.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
Length = 123
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L ++ +++ P +S+ +
Sbjct: 1 MKLVRFLMKLAHESVTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREP--VSLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL---HDATRREARGG 93
IRG+ +RY+ L PD + +D L + ++ ARGG
Sbjct: 59 SIRGNNIRYIIL-PDTIPLDTLLVDDEPRKKPARGG 93
>gi|448082775|ref|XP_004195217.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359376639|emb|CCE87221.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F F + + VT+ELKN +I G + S +NI ++N +++ + P +L N I
Sbjct: 6 FLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMN--I 63
Query: 63 RGSVVRYVQLPPD-GVDVDLLHDATRREARG 92
RG+ +R V LP D +D L A + +G
Sbjct: 64 RGNQIRLVILPDDLNIDSVLAKSAVTIKGQG 94
>gi|426328967|ref|XP_004025517.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Gorilla
gorilla gorilla]
Length = 123
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAN--VTYTDRWGHQVKLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|448087362|ref|XP_004196309.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359377731|emb|CCE86114.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F F + + VT+ELKN +I G + S +NI ++N +++ + P +L N I
Sbjct: 6 FLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQYMN--I 63
Query: 63 RGSVVRYVQLPPD-GVDVDLLHDATRREARG 92
RG+ +R V LP D +D L A + +G
Sbjct: 64 RGNQIRLVILPDDLNIDSVLAKSAVTIKGQG 94
>gi|344287217|ref|XP_003415351.1| PREDICTED: hypothetical protein LOC100665419 [Loxodonta africana]
Length = 258
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|71028592|ref|XP_763939.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350893|gb|EAN31656.1| hypothetical protein TP04_0304 [Theileria parva]
Length = 55
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 48 QDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
+D + ++LSV NCF+RGSVVRYV P ++ + L + RR+A
Sbjct: 4 KDSFLNLLSVVNCFVRGSVVRYVFFNPSDINTEELQELCRRQA 46
>gi|157823641|ref|NP_001099543.1| U6 snRNA-associated Sm-like protein LSm4 [Rattus norvegicus]
gi|159032056|ref|NP_056631.2| U6 snRNA-associated Sm-like protein LSm4 [Mus musculus]
gi|12846677|dbj|BAB27261.1| unnamed protein product [Mus musculus]
gi|20073103|gb|AAH26747.1| Lsm4 protein [Mus musculus]
gi|26354156|dbj|BAC40708.1| unnamed protein product [Mus musculus]
gi|74198684|dbj|BAE39816.1| unnamed protein product [Mus musculus]
gi|74228648|dbj|BAE25390.1| unnamed protein product [Mus musculus]
gi|148696910|gb|EDL28857.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149036057|gb|EDL90723.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
Length = 138
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P D + D R EA G
Sbjct: 59 -CYIRGSTIKYLRIP------DEIIDMVREEAAKG 86
>gi|313226324|emb|CBY21468.1| unnamed protein product [Oikopleura dioica]
gi|313241294|emb|CBY33571.1| unnamed protein product [Oikopleura dioica]
Length = 127
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+N R+ + + P L
Sbjct: 1 MKLARFLMKLSHETVTIELKNGTQVVGTIAGVDICMNTHLKNVRLTVKGREPQQLDA--L 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRG+ +RY L PD V +D L +ARGG
Sbjct: 59 SIRGNNIRYYIL-PDSVPLDTLLIDDGPKARGG 90
>gi|346324354|gb|EGX93951.1| small nuclear ribonucleoprotein Sm D1 [Cordyceps militaris CM01]
Length = 119
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + V VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQEPISLDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|157093137|gb|ABV22223.1| small nuclear ribonucleoprotein Sm D1 [Karlodinium micrum]
Length = 112
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V VELKN + GT+ VD +N ++N + + K P +S+ +
Sbjct: 1 MRLVRFLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGKPP--VSMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRREARGG 93
IRG+ VRYV L PD + +D LL D +R + G
Sbjct: 59 TIRGNNVRYVIL-PDSIPLDTLLVDDAKRLPKLG 91
>gi|345564647|gb|EGX47607.1| hypothetical protein AOL_s00083g115 [Arthrobotrys oligospora ATCC
24927]
Length = 132
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN I GT+ +V +N L R+ +++ P L N
Sbjct: 1 MKLVRFLMKCANETVTVELKNGTIIHGTITTVTPTMNTSLRTVRMTVRNREPQTLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTL 79
>gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes]
Length = 144
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDMVKEDVLSKGRGRGG 92
>gi|118394903|ref|XP_001029810.1| Sm protein [Tetrahymena thermophila]
gi|89284080|gb|EAR82147.1| Sm protein [Tetrahymena thermophila SB210]
Length = 111
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L G+ VT+ELKN I G++ +VD +N L ++ + K P +S+ +
Sbjct: 1 MKLVRFLMKLKGQTVTIELKNGTQIIGSIIAVDIRMNTHLSKVKMTIKGKNP--VSLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY QL PD + +D L
Sbjct: 59 TIRGNNIRYFQL-PDALPLDTL 79
>gi|345327225|ref|XP_001510929.2| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Ornithorhynchus anatinus]
Length = 203
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ LVG+ TV+++++ RG + +VD ++NI+L+ +V D++ + + + F+ G
Sbjct: 21 LQGLVGQVTTVDMRDESLARGRVANVDAFMNIRLD--QVTYTDRWGREVQLDDLFVAGRS 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PDGVD+
Sbjct: 79 VRYVHI-PDGVDI 90
>gi|402087104|gb|EJT82002.1| small nuclear ribonucleoprotein Sm D1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L N ++ + + P L N
Sbjct: 1 MKLVRFLMKCTNETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|401422144|ref|XP_003875560.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491798|emb|CBZ27071.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
++ + L G V +ELKN + G + VD +N + + ++ + K P + V +
Sbjct: 13 LITFLQQLRGTLVEIELKNASIVSGEISYVDANMNTYMSHAKITSKGKNP--VEVEEYMV 70
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRRE 89
RGS +RY+ +P D+L A+ ++
Sbjct: 71 RGSTIRYIIMPESLNTYDILKQASTKK 97
>gi|66357964|ref|XP_626160.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
gi|46227255|gb|EAK88205.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
Length = 137
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + LV V +ELKN I+GT+ +VD +N L+N ++ + + P +S+
Sbjct: 12 MKLIRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNP--VSLSQI 69
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRRE 89
+RG+ +RY L PD + +D LL D T ++
Sbjct: 70 TVRGNTIRYFIL-PDSLPLDALLIDDTPKQ 98
>gi|146086705|ref|XP_001465619.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|157869411|ref|XP_001683257.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398015293|ref|XP_003860836.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68224141|emb|CAJ04478.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|134069718|emb|CAM68043.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|322499059|emb|CBZ34131.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
++ + L G V +ELKN + G + VD +N + + ++ + K P + V +
Sbjct: 13 LITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNP--VEVEEYMV 70
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRRE 89
RGS +RY+ +P D+L A+ ++
Sbjct: 71 RGSTIRYIIMPESLNTYDILKQASTKK 97
>gi|443922492|gb|ELU41935.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN + GTL VD +N L+N ++ +++ P L
Sbjct: 1 MKLVRFLMKLNNETVTVELKNGSVVHGTLTGVDVQMNTHLKNVKLTSRNREPTALDT--L 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD +++D L
Sbjct: 59 SIRGNNIRYFVL-PDALNLDAL 79
>gi|410966946|ref|XP_003989986.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Felis catus]
Length = 244
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 142 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 199
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 200 VRYVHIPDD 208
>gi|157109644|ref|XP_001650762.1| small nuclear ribonucleoprotein sm [Aedes aegypti]
gi|108878946|gb|EAT43171.1| AAEL005355-PA [Aedes aegypti]
Length = 154
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|116192449|ref|XP_001222037.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
gi|88181855|gb|EAQ89323.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
Length = 125
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L N ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQEPIHLETLN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -VRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S G+ + +ELKN G L S D ++N+ LE +D ++ C
Sbjct: 1 MLPLSLLTTAKGQPMLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDG-DRFWKLKEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
+IRG+ ++Y+++P + +D+ + + ++A
Sbjct: 60 YIRGNSIKYLRIPDEIIDLVQEEEISAKDA 89
>gi|328876176|gb|EGG24539.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 162
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV-----DQDKYPHML 55
ML S + G ++ VELKN G L + D ++NI N R V D DK+
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGILVNCDNWMNI---NMRTVIRTSKDSDKF---W 54
Query: 56 SVRNCFIRGSVVRYVQLPPDGVDV 79
++ C+IRG+ ++Y+ +P + +D+
Sbjct: 55 KLQGCYIRGNTIKYITVPDEIIDL 78
>gi|294944597|ref|XP_002784335.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239897369|gb|EER16131.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L VTVELKN + GT+ VD +N ++N +V + + P + + +
Sbjct: 1 MKLVRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNP--VGMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREA 90
IRGS +RY L PD + +D L+ D + +A
Sbjct: 59 TIRGSTIRYFIL-PDHIPLDTLLIDDGPKNKA 89
>gi|354473886|ref|XP_003499163.1| PREDICTED: hypothetical protein LOC100769464 [Cricetulus griseus]
Length = 391
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 254 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 310
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P D + D R EA G
Sbjct: 311 ECYIRGSTIKYLRIP------DEIIDMVREEAAKG 339
>gi|294950553|ref|XP_002786687.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239900979|gb|EER18483.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L VTVELKN + GT+ VD +N ++N +V + + P + + +
Sbjct: 1 MKLVRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNP--VGMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREA 90
IRGS +RY L PD + +D L+ D + +A
Sbjct: 59 TIRGSTIRYFIL-PDHIPLDTLLIDDGPKNKA 89
>gi|367020776|ref|XP_003659673.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
gi|347006940|gb|AEO54428.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
Length = 118
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L N ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLETLN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -VRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|355700149|gb|AES01356.1| LSM4-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 153
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 16 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 73
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 74 -CYIRGSTIKYLRIPDEIIDM 93
>gi|340718601|ref|XP_003397753.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform
2 [Bombus terrestris]
Length = 148
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + + VELKN G L S D ++NI L D DK+ M C
Sbjct: 16 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLRE----DGDKFWRMPE---C 68
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 69 YIRGSTIKYLRI-PDEV-IDMVKEDVQMKSRG 98
>gi|145345472|ref|XP_001417233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577460|gb|ABO95526.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L VT+ELKN GT+ VD +N L+ ++ + K P +V +
Sbjct: 1 MKLVRFLQKLSNESVTIELKNGTTAHGTIMGVDVSMNTHLKQVKLTLKGKNP--TAVEHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRREAR 91
+RG+ +RY L PD +++D LL D T ++ +
Sbjct: 59 SVRGNTIRYYIL-PDSLNLDTLLVDDTPKQGK 89
>gi|400602721|gb|EJP70323.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 119
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + V VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQDPISLDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|348558677|ref|XP_003465143.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Cavia
porcellus]
Length = 139
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>gi|47217413|emb|CAG00773.1| unnamed protein product [Tetraodon nigroviridis]
Length = 131
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 58
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 59 CYIRGSTIKYLRIPDEIIDMVKEEVLSKGRGRGG 92
>gi|387016780|gb|AFJ50509.1| u6 snRNA-associated Sm-like protein LSm4-like [Crotalus
adamanteus]
Length = 139
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>gi|357442545|ref|XP_003591550.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
gi|355480598|gb|AES61801.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
Length = 106
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
M S K G + VELKN G L + D ++NI L D D++ +M
Sbjct: 1 MFPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYM---P 57
Query: 59 NCFIRGSVVRYVQLPPD 75
C+IRG+ ++Y++LPP
Sbjct: 58 KCYIRGNTIKYLRLPPS 74
>gi|118790653|ref|XP_318746.3| AGAP009687-PA [Anopheles gambiae str. PEST]
gi|116118049|gb|EAA14138.4| AGAP009687-PA [Anopheles gambiae str. PEST]
Length = 157
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|6912486|ref|NP_036453.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Homo sapiens]
gi|78369240|ref|NP_001030513.1| U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|160837874|ref|NP_001104275.1| LSM4 homolog, U6 small nuclear RNA associated [Canis lupus
familiaris]
gi|386780610|ref|NP_001247502.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|296233291|ref|XP_002761949.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Callithrix
jacchus]
gi|297704123|ref|XP_002828970.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pongo abelii]
gi|338718643|ref|XP_001500651.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Equus
caballus]
gi|397493881|ref|XP_003817824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Pan paniscus]
gi|402904782|ref|XP_003915219.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Papio anubis]
gi|410950868|ref|XP_003982124.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Felis catus]
gi|426387786|ref|XP_004060343.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 1
[Gorilla gorilla gorilla]
gi|10720082|sp|Q9Y4Z0.1|LSM4_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm4; AltName:
Full=Glycine-rich protein; Short=GRP
gi|109892572|sp|Q3ZBK6.1|LSM4_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|5919149|gb|AAD56228.1|AF182290_1 U6 snRNA-associated Sm-like protein LSm4 [Homo sapiens]
gi|6563244|gb|AAF17216.1|AF117235_1 glycine-rich protein [Homo sapiens]
gi|9623197|gb|AAF90055.1|AF251218_1 LSm4 autoantigen [Homo sapiens]
gi|5262858|emb|CAB45867.1| Lsm4 protein [Homo sapiens]
gi|12653237|gb|AAH00387.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|13177763|gb|AAH03652.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|18645159|gb|AAH22198.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|23273864|gb|AAH23665.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|73587230|gb|AAI03244.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119605092|gb|EAW84686.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|190690627|gb|ACE87088.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|190691985|gb|ACE87767.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
protein [synthetic construct]
gi|208966682|dbj|BAG73355.1| LSM4 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296486080|tpg|DAA28193.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Bos taurus]
gi|380784377|gb|AFE64064.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Macaca
mulatta]
gi|383408443|gb|AFH27435.1| U6 snRNA-associated Sm-like protein LSm4 [Macaca mulatta]
gi|410214894|gb|JAA04666.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410249724|gb|JAA12829.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410289766|gb|JAA23483.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410328789|gb|JAA33341.1| LSM4 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 139
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>gi|346469961|gb|AEO34825.1| hypothetical protein [Amblyomma maculatum]
Length = 142
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + T + RG
Sbjct: 59 -CYIRGSTIKYLRI-PDEV-IDMVKEETLVKGRG 89
>gi|383872886|ref|NP_001244887.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
gi|402853951|ref|XP_003891651.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Papio
anubis]
gi|355557828|gb|EHH14608.1| hypothetical protein EGK_00564 [Macaca mulatta]
gi|355745143|gb|EHH49768.1| hypothetical protein EGM_00483 [Macaca fascicularis]
gi|380817368|gb|AFE80558.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
gi|383422299|gb|AFH34363.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
Length = 123
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|427784849|gb|JAA57876.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 142
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + T + RG
Sbjct: 59 -CYIRGSTIKYLRI-PDEV-IDMVKEETLIKGRG 89
>gi|332248350|ref|XP_003273327.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Nomascus
leucogenys]
Length = 123
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|301753917|ref|XP_002912773.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Ailuropoda melanoleuca]
Length = 152
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>gi|209875591|ref|XP_002139238.1| small nuclear ribonucleoprotein Sm D1 [Cryptosporidium muris
RN66]
gi|209554844|gb|EEA04889.1| small nuclear ribonucleoprotein Sm D1, putative [Cryptosporidium
muris RN66]
Length = 114
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + LV V +ELKN ++GT+ +VD +N L+N ++ + + P +S+
Sbjct: 1 MKLVRFLMKLVNNSVVIELKNGTIVQGTIVNVDMAMNTYLKNVKMSVKQRNP--ISLLQL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RGS +RY L PD + +D L
Sbjct: 59 TVRGSTIRYFIL-PDSLPLDTL 79
>gi|350535801|ref|NP_001232447.1| U6 snRNA-associated Sm-like protein LSm4 [Taeniopygia guttata]
gi|363743848|ref|XP_418245.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Gallus
gallus]
gi|197129949|gb|ACH46447.1| putative LSM4 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
Length = 138
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>gi|195578187|ref|XP_002078947.1| GD22262 [Drosophila simulans]
gi|194190956|gb|EDX04532.1| GD22262 [Drosophila simulans]
Length = 154
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|154337565|ref|XP_001565015.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062054|emb|CAM45146.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
++ + L G V +ELKN + G + VD +N + + ++ + K P + V +
Sbjct: 13 LITFLQHLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHVKITSKGKNP--VEVEEYMV 70
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRRE 89
RGS +RY+ LP D+L A+ ++
Sbjct: 71 RGSTIRYIILPESLNTYDVLKQASAKK 97
>gi|392562210|gb|EIW55391.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 122
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN I GT+ VD +N L+ ++ +++ P S+ +
Sbjct: 1 MKLVRFLMKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPT--SLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + ++R
Sbjct: 59 SIRGNNIRYFVL-PDALPLDTLLVDDAPKPKSR 90
>gi|25012547|gb|AAN71375.1| RE35747p [Drosophila melanogaster]
Length = 154
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|78706862|ref|NP_001027236.1| CG17768, isoform A [Drosophila melanogaster]
gi|320544912|ref|NP_001188778.1| CG17768, isoform B [Drosophila melanogaster]
gi|45445082|gb|AAF52938.3| CG17768, isoform A [Drosophila melanogaster]
gi|201065957|gb|ACH92388.1| FI07244p [Drosophila melanogaster]
gi|318068412|gb|ADV37028.1| CG17768, isoform B [Drosophila melanogaster]
Length = 154
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|297665481|ref|XP_002811089.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Pongo abelii]
Length = 123
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|389625893|ref|XP_003710600.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
gi|189028839|sp|A4RQ29.1|LSM6_MAGO7 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|351650129|gb|EHA57988.1| U6 snRNA-associated Sm-like protein LSm6 [Magnaporthe oryzae
70-15]
Length = 83
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G VTV+L + + +G L SVD Y+NI LE V Q K S + F+
Sbjct: 16 SFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKK----RSYGDAFV 71
Query: 63 RGSVVRYVQLPP 74
RG+ V Y+ P
Sbjct: 72 RGNNVMYIAASP 83
>gi|409074771|gb|EKM75161.1| hypothetical protein AGABI1DRAFT_80275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 122
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + + R
Sbjct: 59 SIRGNNIRYFTL-PDALPLDTLLVDDAPKPKGR 90
>gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae]
Length = 135
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV----DLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + + R+ +GG
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDMVKEETVTKNKQSRDQKGG 96
>gi|392589390|gb|EIW78721.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ +++ P S+ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGSVVNGTITGVDMQMNTHLKTVKMTARNRDPT--SLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY+ L PD + +D L+ DA + +AR
Sbjct: 59 SIRGNNIRYIVL-PDALPLDTLLVDDAPKPKAR 90
>gi|350409693|ref|XP_003488818.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Bombus
impatiens]
gi|380028027|ref|XP_003697713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Apis
florea]
Length = 139
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 59 -CYIRGSTIKYLRI-PDEV-IDMVKEDVQMKSRG 89
>gi|389743937|gb|EIM85121.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 130
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + + VELKN G L + D ++NI L D V+ C
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADG-ERFWKVKEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA----RGG 93
+IRGS ++Y+++P +DV REA RGG
Sbjct: 60 YIRGSTIKYIRVPETLLDVVKEEQLRAREAGKSQRGG 96
>gi|307178481|gb|EFN67170.1| U6 snRNA-associated Sm-like protein LSm4 [Camponotus floridanus]
Length = 139
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML + K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 59 -CYIRGSTIKYLRI-PDEV-IDMVKEDIQMKSRG 89
>gi|255075581|ref|XP_002501465.1| predicted protein [Micromonas sp. RCC299]
gi|226516729|gb|ACO62723.1| predicted protein [Micromonas sp. RCC299]
Length = 117
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L VT+ELKN I GT+ VD +N L+N ++ + K P +S+ +
Sbjct: 1 MKLVRFLQKLSHESVTIELKNGTVIAGTIMGVDVSMNTHLKNVKMTLKGKNP--VSMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD +++D L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLDTL 79
>gi|403412301|emb|CCL99001.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P S+ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTARNREP--TSLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
IRG+ +RY L PD + +D L EA G
Sbjct: 59 SIRGNNIRYFVL-PDALPLDTLKMMREVEAAAG 90
>gi|195146798|ref|XP_002014371.1| GL19160 [Drosophila persimilis]
gi|194106324|gb|EDW28367.1| GL19160 [Drosophila persimilis]
Length = 151
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|345488677|ref|XP_003425963.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Nasonia
vitripennis]
Length = 138
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 59 -CYIRGSTIKYLRI-PDEV-IDMVKEDVQMKSRG 89
>gi|410911580|ref|XP_003969268.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Takifugu
rubripes]
Length = 135
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+N+ RG + +VD ++NI+LE V+ +D+ + ++++ F+ G
Sbjct: 34 LQGLQGEVTTVDLRNECTARGRIINVDAFMNIRLEA--VLYRDRRGQIANLQDLFVTGRN 91
Query: 67 VRYVQLPPDGVDV 79
VRYV + PD VD+
Sbjct: 92 VRYVHI-PDHVDI 103
>gi|14249632|ref|NP_116270.1| U7 snRNA-associated Sm-like protein LSm10 [Homo sapiens]
gi|332808451|ref|XP_513319.2| PREDICTED: LSM10, U7 small nuclear RNA associated [Pan
troglodytes]
gi|397482876|ref|XP_003812641.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Pan
paniscus]
gi|20177959|sp|Q969L4.1|LSM10_HUMAN RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|15788234|gb|AAL07689.1|AF394685_1 U7 snRNA-associated Sm-like protein LSM10 [Homo sapiens]
gi|14043264|gb|AAH07623.1| LSM10, U7 small nuclear RNA associated [Homo sapiens]
gi|119627772|gb|EAX07367.1| LSM10, U7 small nuclear RNA associated [Homo sapiens]
gi|307683145|dbj|BAJ21189.1| LSM10, U7 small nuclear RNA associated [synthetic construct]
gi|410214430|gb|JAA04434.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410259918|gb|JAA17925.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410291414|gb|JAA24307.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410328355|gb|JAA33124.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
Length = 123
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|213401339|ref|XP_002171442.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
gi|211999489|gb|EEB05149.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L +++ELKN + GT+ SVD +N L+ ++ +D+ P + +
Sbjct: 1 MKLVRFLMKLTNETISIELKNGTIVNGTITSVDMQMNTHLKAVKMTVKDREP--VPLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS VRY L PD + +D L
Sbjct: 59 SIRGSNVRYFIL-PDSLPLDTL 79
>gi|428673180|gb|EKX74093.1| small ribonucleoprotein D1, putative [Babesia equi]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ +D +N L+N ++V +D +L +
Sbjct: 1 MKLVRFLMKLANESVTLELKNGTVMTGTIIGIDISMNTHLKNVKIVKKDNSVILLD--HL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRREARG 92
+RG+ +RY L PD + +D LL D T ++ G
Sbjct: 59 TVRGNSIRYYLL-PDSIPLDTLLIDDTPKQKPG 90
>gi|391324905|ref|XP_003736982.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Metaseiulus occidentalis]
Length = 136
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ L GRE TV+L+N+ + GT+ VD +NI++ + V + S +
Sbjct: 18 LLCLVQALEGRETTVDLRNETEVVGTIEVVDGRMNIQMSDAVVTMPNGSSRQFSF--LHV 75
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRR 88
RG VRYV +PPD + + D +R
Sbjct: 76 RGRNVRYVHIPPDVNIMKTIEDRVQR 101
>gi|194859892|ref|XP_001969475.1| GG23936 [Drosophila erecta]
gi|190661342|gb|EDV58534.1| GG23936 [Drosophila erecta]
Length = 154
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|389632099|ref|XP_003713702.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|351646035|gb|EHA53895.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|440473990|gb|ELQ42759.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae Y34]
gi|440485032|gb|ELQ65031.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae P131]
Length = 125
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L N ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|452821316|gb|EME28348.1| small nuclear ribonucleoprotein D1 [Galdieria sulphuraria]
Length = 122
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN ++GT+ VD +N L+ ++ + K P L +
Sbjct: 1 MKLTRFLMKLNSETVTVELKNGTVVQGTVTGVDHNMNTTLKAVKMTPRGKNPVTLDAMS- 59
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATR 87
+RGS +RY LP VD L+ D+ R
Sbjct: 60 -LRGSTIRYFILPESLNVDSLLVDDSIR 86
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L S D ++N+ L+ D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRM---A 57
Query: 59 NCFIRGSVVRYVQLP 73
NC++RG+ ++YV +P
Sbjct: 58 NCYVRGNTIKYVCVP 72
>gi|33337945|gb|AAQ13594.1|AF166092_1 MSTP074 [Homo sapiens]
Length = 123
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFVTGPN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|328780963|ref|XP_624908.3| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Apis
mellifera]
Length = 138
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 59 -CYIRGSTIKYLRI-PDEV-IDMVKEDVQMKSRG 89
>gi|340718599|ref|XP_003397752.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like isoform 1
[Bombus terrestris]
Length = 154
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 16 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPE-- 73
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 74 -CYIRGSTIKYLRI-PDEV-IDMVKEDVQMKSRG 104
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S FK G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLFKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|353242003|emb|CCA73778.1| related to U6 snRNA-associated Sm-like protein LSm4
[Piriformospora indica DSM 11827]
Length = 126
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S K G+ + VELKN + G L D ++NI L D D++ ++
Sbjct: 1 MLPSSLLKAAQGKPMMVELKNGESFNGHLIDCDAFMNITLREVYQTAADSDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
+IRGS ++Y+Q+ P +D REA
Sbjct: 58 EVYIRGSTIKYLQVQPALLDAVKEEQQKAREA 89
>gi|317135015|gb|ADV03070.1| SmD1 protein [Amphidinium carterae]
Length = 111
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V VELKN + GT+ VD +N ++N + + K P +++ +
Sbjct: 1 MRLVRFLMKLSNESVVVELKNSTVVSGTITGVDVSMNTHMKNIKFTVKGKPP--IAMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATR 87
IRG+ +RYV L PD + +D L+ D+ R
Sbjct: 59 TIRGNNIRYVVL-PDSIPLDTLLIEDSKR 86
>gi|342874370|gb|EGU76384.1| hypothetical protein FOXB_13062 [Fusarium oxysporum Fo5176]
Length = 123
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTIKGQEPISLETMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|395830185|ref|XP_003788215.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Otolemur garnettii]
gi|395830187|ref|XP_003788216.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 2
[Otolemur garnettii]
Length = 123
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D+ H + + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRRGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|354545656|emb|CCE42383.1| hypothetical protein CPAR2_200260 [Candida parapsilosis]
Length = 118
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + VTVELKN I GTL S +N+ L+N ++ Q KY + ++ +
Sbjct: 6 FLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKL--QQKYQDPILLQYINV 63
Query: 63 RGSVVRYVQLPPD-GVDVDLLHDATRREARGG 93
RG+ +R + LP D +D L TR + +G
Sbjct: 64 RGNQIRQILLPEDLNIDSVLEKSQTRIKGQGA 95
>gi|195051225|ref|XP_001993055.1| GH13613 [Drosophila grimshawi]
gi|193900114|gb|EDV98980.1| GH13613 [Drosophila grimshawi]
Length = 155
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEVIDM 78
>gi|195434128|ref|XP_002065055.1| GK14878 [Drosophila willistoni]
gi|194161140|gb|EDW76041.1| GK14878 [Drosophila willistoni]
Length = 303
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + D D++ M
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 58 ECYIRGSTIKYLRIPDEVIDM 78
>gi|47212040|emb|CAF92642.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+N+ RG + SVD ++N++LE V+ +D+ + ++++ F+ G
Sbjct: 16 LQGLQGEVTTVDLRNECTARGRIVSVDAFMNMRLEA--VLYRDRRGQLANMQDLFVTGRN 73
Query: 67 VRYVQLPPDGVDV 79
VRYV + PD VD+
Sbjct: 74 VRYVHV-PDHVDM 85
>gi|68060529|ref|XP_672249.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56489157|emb|CAI03757.1| hypothetical protein PB301337.00.0 [Plasmodium berghei]
Length = 48
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 55 LSVRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
LS++ CF+RGSVVRYV LP + V+++ L R+EA+
Sbjct: 1 LSIKTCFVRGSVVRYVFLPSNEVNIEKLRHMCRQEAK 37
>gi|112253614|gb|ABI14393.1| small nuclear riboprotein Sm-D1 [Karlodinium micrum]
Length = 112
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V VELKN + GT+ VD +N ++N + + + P +S+ +
Sbjct: 1 MRLVRFLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGEPP--VSMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRREARGG 93
IRG+ VRYV L PD + +D LL D +R + G
Sbjct: 59 TIRGNNVRYVIL-PDSIPLDTLLVDDAKRLPKLG 91
>gi|302923356|ref|XP_003053658.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
gi|256734599|gb|EEU47945.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
Length = 114
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ SV +N L N ++ + + P L N IRGS +RY L P
Sbjct: 8 VTIELKNGTIVHGTISSVSPQMNTALRNVKMTIKGQDPVSLDTMN--IRGSTIRYFIL-P 64
Query: 75 DGVDVD--LLHDATRREARG 92
D + +D L+ DA + + +
Sbjct: 65 DSLPLDTLLIDDAPKPKNKA 84
>gi|403293073|ref|XP_003937547.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AEVTYTDRWGHQVKLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|66362186|ref|XP_628057.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
gi|46227630|gb|EAK88565.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
Length = 143
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+G VT+ELK+ RGTL V+ +N LE+ +D P +S+ C++RGS +R+
Sbjct: 36 LGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKP--VSLEQCYLRGSQIRFC 93
Query: 71 QLPPDGVDVDLLHDA 85
LP D+L +A
Sbjct: 94 ILP------DMLKNA 102
>gi|395848095|ref|XP_003796696.1| PREDICTED: uncharacterized protein LOC100963645 [Otolemur
garnettii]
Length = 312
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 175 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PE 231
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + RGG
Sbjct: 232 CYIRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGG 265
>gi|67601489|ref|XP_666403.1| aspartyl protease-like [Cryptosporidium hominis TU502]
gi|54657392|gb|EAL36172.1| aspartyl protease-like [Cryptosporidium hominis]
Length = 128
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+G VT+ELK+ RGTL V+ +N LE+ +D P +S+ C++RGS +R+
Sbjct: 14 LGHIVTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKP--VSLEQCYLRGSQIRFC 71
Query: 71 QLPPDGVDVDLLHDA 85
LP D+L +A
Sbjct: 72 ILP------DMLKNA 80
>gi|330038573|ref|XP_003239635.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
gi|327206559|gb|AEA38737.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
Length = 88
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
F +++ VT+ELKN L + G + + D+Y+NI L+ + + K L + + IRGS
Sbjct: 6 FYEILNETVTIELKNGLILHGIMLNADKYMNIYLKKIKKTNFSKIN--LEIESISIRGSS 63
Query: 67 VRYVQLP 73
++Y+ LP
Sbjct: 64 IKYLILP 70
>gi|365981439|ref|XP_003667553.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
gi|343766319|emb|CCD22310.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS
421]
Length = 201
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT---RVVDQDKYPH--ML 55
ML + G+++ VELKN I G L +VD ++N+ L N + D P ++
Sbjct: 1 MLPLYLLTNAKGQQMRVELKNGEVIEGKLTNVDNWMNLTLSNVSEYKGSDAFASPQTEVM 60
Query: 56 SVRNCFIRGSVVRYVQLPPDGVDV 79
++RG+ ++Y+ LP D +D+
Sbjct: 61 KSTEIYVRGTFIKYINLPDDIIDI 84
>gi|189028853|sp|A7F5M4.2|LSM6_SCLS1 RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ D++G V V+L N L +G L SVD Y+NI LE V + K H + F+
Sbjct: 16 SFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 72 RGNNVMYIS 80
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV----DQDKYPHMLS 56
ML S K G + VELKN G L++ D ++N+ L T+VV D D++ +
Sbjct: 1 MLPLSLLKTSQGHSMLVELKNGETYNGVLNACDAWMNVHL--TKVVCTNKDGDRFHEL-- 56
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
CFIRG+ ++Y+ + + + + + R RG
Sbjct: 57 -ETCFIRGNTIKYMCVQEEIIQLAKEENERRAAQRG 91
>gi|367005821|ref|XP_003687642.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS
4417]
gi|357525947|emb|CCE65208.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS
4417]
Length = 197
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD-----QDKYPHML 55
ML + G+++ +ELKN I+GTL +VD ++N+ L N VD +D +
Sbjct: 1 MLPLYLLTNTKGQQMFIELKNGTTIQGTLTNVDNWMNLTLSNVVQVDNSEPNEDGKVEKI 60
Query: 56 SVRNCFIRGSVVRYVQLPPDGVD 78
++ ++RG+ ++Y+ L D ++
Sbjct: 61 TLEQIYLRGTHIKYINLQDDIIE 83
>gi|340372719|ref|XP_003384891.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Amphimedon queenslandica]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY--PHMLSVRNC 60
+ + L + TVEL+N++ I+GT+ +VD +N + KY +++ N
Sbjct: 13 LLCFLQGLQNCKTTVELRNEITIKGTIVNVDDKMNTTISGAEY----KYLDGTVMNCENL 68
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FI+GS +RYV +P D + LL+ E+
Sbjct: 69 FIQGSQIRYVHIPDDIDPMTLLNKIVDEES 98
>gi|242216937|ref|XP_002474272.1| predicted protein [Postia placenta Mad-698-R]
gi|220726564|gb|EED80509.1| predicted protein [Postia placenta Mad-698-R]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P ++
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKLTARNREP--MAHETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + + R
Sbjct: 59 TIRGNTIRYFVL-PDAIPLDTLLVDDAPKPKNR 90
>gi|426195101|gb|EKV45031.1| hypothetical protein AGABI2DRAFT_73218, partial [Agaricus
bisporus var. bisporus H97]
Length = 118
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VTVELKN + GT+ VD +N L+ ++ +++ P L + IRG+
Sbjct: 2 FLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLD--SLSIRGN 59
Query: 66 VVRYVQLPPDGVDVD--LLHDATRREAR 91
+RY L PD + +D L+ DA + + R
Sbjct: 60 NIRYFTL-PDALPLDTLLVDDAPKPKGR 86
>gi|322693984|gb|EFY85827.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium acridum CQMa
102]
gi|322708999|gb|EFZ00576.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium anisopliae
ARSEF 23]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTPRGQDPISLDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|429859545|gb|ELA34324.1| u6 snrna-associated sm-like protein lsm6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 83
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR---NCF 61
S+ D++G VTV+L + + +G L SVD Y+NI LE T ++Y + + R + F
Sbjct: 16 SFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEYVNGVKRRAYGDAF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>gi|148696909|gb|EDL28856.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 143
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 7 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 63
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P D + D R EA G
Sbjct: 64 CYIRGSTIKYLRIP------DEIIDMVREEAAKG 91
>gi|402086460|gb|EJT81358.1| U6 snRNA-associated Sm-like protein LSm6 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 83
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ D++G VTV+L + + +G L SVD Y+NI LE V Q K + + F+
Sbjct: 16 SFLSDIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSY----GDAFV 71
Query: 63 RGSVVRYV 70
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
>gi|341038646|gb|EGS23638.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 118
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV ++ L N R + + P+ SV +
Sbjct: 1 MKLVRFLMKCANETVTIELKNGAIVHGTIASVTPKMDTALRNVRYTPKGEEPY--SVESL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RG+ +RY L PD + +D L+ DA + + +
Sbjct: 59 TVRGNTIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|395328270|gb|EJF60663.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 132
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L + DK+ +R
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKF---WKLR 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRGS ++Y+++P D L DA + E
Sbjct: 58 ECYIRGSTIKYLRVP------DTLLDAVKEE 82
>gi|340381476|ref|XP_003389247.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Amphimedon queenslandica]
Length = 119
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L++ ++ + + P L++
Sbjct: 1 MKLVRFLMKLNHETVTIELKNGTVVHGTVAGVDMSMNTHLKSVKLTLKGREP--LALDTL 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREAR 91
+RG+ +RY LP +D L+ D TRR+ +
Sbjct: 59 SLRGNNIRYYILPESVPLDTLLVDDTTRRKTK 90
>gi|66819863|ref|XP_643590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74857296|sp|Q552U1.1|LSM6_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm6
gi|60471654|gb|EAL69610.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 88
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR--NCF 61
F++FK +GR V V+L N + RG L VD +NI +E T ++ L + +CF
Sbjct: 18 FNFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQT----EEYLNGQLKTKYGDCF 73
Query: 62 IRGSVVRYVQLPP 74
+RG+ V Y+ P
Sbjct: 74 LRGNNVLYISAQP 86
>gi|410921860|ref|XP_003974401.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Takifugu rubripes]
Length = 147
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 6 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 62
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ ++ RGG
Sbjct: 63 CYIRGSTIKYLRIPDEIIDMVKEDVLSKGRGRGG 96
>gi|21703324|gb|AAM76159.1|AF483079_1 U7 snRNP-specific SM-like protein [Boltenia villosa]
Length = 100
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 3 FFSY------FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS 56
FF Y + G+ +TVE+KND I GTL VD ++N+ ++ ++ + +S
Sbjct: 9 FFKYNTLAILLCGMEGKLITVEMKNDTTITGTLXCVDGFMNMFMKKAKISSCNGTS--MS 66
Query: 57 VRNCFIRGSVVRYVQLPPD 75
++ S RY+ LP D
Sbjct: 67 AERIHVKASNTRYIMLPND 85
>gi|346978373|gb|EGY21825.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 84
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVDQDKYPHMLSVRNCFIR 63
S+ D++G VTV+L + + +G L SVD Y+NI LE T V+ K S + F+R
Sbjct: 18 SFLSDIIGNAVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGTK---RRSYGDAFVR 74
Query: 64 GSVVRYVQ 71
G+ V Y+
Sbjct: 75 GNNVMYIS 82
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|348519431|ref|XP_003447234.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oreochromis niloticus]
gi|348519433|ref|XP_003447235.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oreochromis niloticus]
Length = 140
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+N+ RG + +VD ++NI+LE+ V+ +D+ + +++ FI G
Sbjct: 39 LQGLQGEVTTVDLRNESTARGRVVNVDAFMNIRLED--VLYRDRRGQLTQLQDLFITGRN 96
Query: 67 VRYVQLP 73
+RYV +P
Sbjct: 97 IRYVHIP 103
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRNCFIRGSVV 67
+ VG +TVELK A RGTL+ + NI +++ V D K H+ N +IRG+++
Sbjct: 13 EAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHL---ENVYIRGNML 69
Query: 68 RYVQLPPDGVDVDLLHDA 85
R++ +P D+L A
Sbjct: 70 RFIIVP------DMLQQA 81
>gi|328770984|gb|EGF81025.1| hypothetical protein BATDEDRAFT_11263 [Batrachochytrium
dendrobatidis JAM81]
Length = 124
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR 63
F + VT+ELKN I GT+ VD +N L+ ++ ++K P + + IR
Sbjct: 7 FRFLMKCWNETVTIELKNGTTINGTITGVDMQMNTHLKTVKMTVKNKDP--VHLETLSIR 64
Query: 64 GSVVRYVQLPPDGVDVDLL 82
G+ +RY L PD + +D L
Sbjct: 65 GNTIRYFIL-PDALPLDTL 82
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|448524829|ref|XP_003869020.1| Smd1 protein [Candida orthopsilosis Co 90-125]
gi|380353373|emb|CCG22883.1| Smd1 protein [Candida orthopsilosis]
Length = 116
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + VTVELKN I GTL S +N+ L+N ++ Q KY + ++ +
Sbjct: 6 FLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKL--QQKYQDPILLQYINV 63
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RG+ +R + LP D +++D + + ++ + +G
Sbjct: 64 RGNQIRQILLPED-LNIDSVLEKSQTKIKG 92
>gi|340376985|ref|XP_003387011.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like
[Amphimedon queenslandica]
Length = 125
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI+L+ D D++ M
Sbjct: 4 LPLSLLKAAQDNPMLVELKNGETYNGHLVSCDNWMNIQLKEVICTSRDGDRFWKM---PE 60
Query: 60 CFIRGSVVRYVQLPPDGVD 78
CFIRGS+++Y+++P + +D
Sbjct: 61 CFIRGSMIKYLRIPDEVID 79
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 58 ECYIRGNTIKYLRVPDEVID 77
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|443711054|gb|ELU05001.1| hypothetical protein CAPTEDRAFT_200433 [Capitella teleta]
Length = 136
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + V + VELKN G L S D ++NI + D D++ M
Sbjct: 1 MLPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINMREVICTSRDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C++RGS ++Y+++P + +D+
Sbjct: 59 -CYVRGSTIKYLRIPDEIIDM 78
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|303277487|ref|XP_003058037.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L T+ELKN + GT+ VD +N L+N ++ + K P +S+ +
Sbjct: 1 MKLVRFLQKLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNP--VSMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARGG 93
+RG+ +RY L PD +++D L+ D + +++ G
Sbjct: 59 SVRGNNIRYYIL-PDSLNLDTLLVDDTPKIKSKPG 92
>gi|226372678|gb|ACO51964.1| U7 snRNA-associated Sm-like protein LSm10 [Rana catesbeiana]
Length = 121
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TVEL+++ + +G++ +VD ++N++LE +V D+ + + FI G
Sbjct: 21 LQGLHGHATTVELRDESSAKGSVINVDAFMNVRLE--KVTYTDRRGKESKLDDLFINGRN 78
Query: 67 VRYVQLPPDGVDVDLLHDATRR 88
VRY+ +P +VD++H R
Sbjct: 79 VRYIHIPE---EVDIIHTIEER 97
>gi|170095247|ref|XP_001878844.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
gi|164646148|gb|EDR10394.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
Length = 127
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGCIVHGTITGVDMQMNTHLKTVKMTMRNRDPTTLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ VRY L PD + +D L+ DA + + R
Sbjct: 59 SIRGNTVRYFVL-PDALPLDTLLVDDAPKPKGR 90
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 58 ECYIRGNTIKYLRVPDEVID 77
>gi|401884158|gb|EJT48330.1| hypothetical protein A1Q1_02613 [Trichosporon asahii var. asahii
CBS 2479]
Length = 264
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR-- 58
M + L VT+ELKN I GT+ SVD +N L++ ++ ++ P+ S
Sbjct: 143 MKLVRFLMKLNNETVTIELKNGSVIHGTITSVDPQMNTHLKSVKMSLRNAAPNTPSTHLD 202
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLL 82
+ IRG+ +RY L PD + +D L
Sbjct: 203 SIAIRGNNIRYFIL-PDSLPLDTL 225
>gi|189028861|sp|A6S5C9.2|LSM6_BOTFB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|347826617|emb|CCD42314.1| similar to U6 snRNA-associated Sm-like protein LSm6 [Botryotinia
fuckeliana]
Length = 85
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G +V V+L N L +G L SVD Y+NI LE V + K H + F+
Sbjct: 16 SFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 63 RGSVVRYV 70
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
>gi|154297620|ref|XP_001549236.1| hypothetical protein BC1G_12655 [Botryotinia fuckeliana B05.10]
gi|347842491|emb|CCD57063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 137
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN I GT+ SV +N L ++ ++ L V N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGTSLTLDVIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDA------TRREARG 92
+RGS +RY L PD + +D L+ DA R+EA G
Sbjct: 60 -LRGSTIRYYIL-PDSLPLDTLLIDDAPKPKNKARKEAAG 97
>gi|444706872|gb|ELW48189.1| U7 snRNA-associated Sm-like protein LSm10 [Tupaia chinensis]
Length = 156
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+++ RG + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 54 LQGLQGLVTTVDLRDESVARGRIDNVDAFMNIRL--AQVTYTDRWGHQVKLDDLFVTGRN 111
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 112 VRYVHIPDD 120
>gi|242764900|ref|XP_002340864.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724060|gb|EED23477.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 124
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCMNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|367042806|ref|XP_003651783.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
gi|346999045|gb|AEO65447.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
Length = 121
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L N ++ + + +S+
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTVVHGTIASVSPQMNTALRNVKMTPKGQ--DAISLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 59 NVRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|428180768|gb|EKX49634.1| hypothetical protein GUITHDRAFT_151418 [Guillardia theta
CCMP2712]
Length = 117
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ +D +N L+ ++ ++K P + +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTIVGIDMAMNTHLKAVKLTMRNKTP--VPLEQL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRRE 89
IRGS +RY L PD +++D L+ DA + +
Sbjct: 59 SIRGSNIRYYLL-PDNLNLDTLLVEDAPKHK 88
>gi|310793377|gb|EFQ28838.1| LSM domain-containing protein [Glomerella graminicola M1.001]
gi|380486548|emb|CCF38632.1| U6 snRNA-associated Sm-like protein LSm6 [Colletotrichum
higginsianum]
Length = 83
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CF 61
S+ D++G VTV+L + + +G L SVD Y+NI LE T ++Y + R+ F
Sbjct: 16 SFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEYVNGAKRRSYGDAF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>gi|340383285|ref|XP_003390148.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Amphimedon queenslandica]
Length = 93
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S K + VELKN G L S D ++NI+L+ +D + CF
Sbjct: 4 LPLSLLKAAQDNPMLVELKNGETYNGHLVSCDNWMNIQLKEVICTSRDGE-RFWKMPECF 62
Query: 62 IRGSVVRYVQLPPDGVD 78
IRGS+ +Y+++P + +D
Sbjct: 63 IRGSMTKYLRIPDEVID 79
>gi|50543206|ref|XP_499769.1| YALI0A04961p [Yarrowia lipolytica]
gi|49645634|emb|CAG83694.1| YALI0A04961p [Yarrowia lipolytica CLIB122]
Length = 138
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ SV +N L+N ++ +++ P L N
Sbjct: 1 MKLVRFLMKLTSESVQIELKNGTVLLGTVMSVSNNMNTTLKNVKMTMKNRPPTSLDYIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRREAR 91
IRG+ +R+ L PD + +D LL D T + R
Sbjct: 60 -IRGNTIRFFIL-PDSLPLDTLLIDDTPKAKR 89
>gi|351701223|gb|EHB04142.1| U6 snRNA-associated Sm-like protein LSm4, partial [Heterocephalus
glaber]
Length = 117
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PE 58
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 CYIRGSTIKYLRIPDEIIDM 78
>gi|328862810|gb|EGG11910.1| hypothetical protein MELLADRAFT_32687 [Melampsora larici-populina
98AG31]
Length = 113
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
+FFS L VTVELKN I GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 VFFSI--RLNQETVTVELKNGTVIHGTISGVDVAMNTHLKAVKMTVRNREPQQLD--SLS 56
Query: 62 IRGSVVRYVQLPPDGVDVD-LLHDATRREARGG 93
IRGS +RY L PD + +D LL D + +G
Sbjct: 57 IRGSNIRYFIL-PDSLPLDTLLIDDAPKPKKGA 88
>gi|119193324|ref|XP_001247268.1| hypothetical protein CIMG_01039 [Coccidioides immitis RS]
gi|258574579|ref|XP_002541471.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|303312169|ref|XP_003066096.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237901737|gb|EEP76138.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|240105758|gb|EER23951.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320040082|gb|EFW22016.1| small nuclear ribonucleoprotein SmD1 [Coccidioides posadasii str.
Silveira]
gi|392863489|gb|EAS35757.2| small nuclear ribonucleoprotein Sm D1 [Coccidioides immitis RS]
Length = 120
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGREPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTL 79
>gi|321456471|gb|EFX67578.1| hypothetical protein DAPPUDRAFT_218645 [Daphnia pulex]
Length = 135
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L D D++ M
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSKDGDRFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 58 ECYIRGSTIKYLRIPDEVIDM 78
>gi|221125651|ref|XP_002163302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Hydra
magnipapillata]
Length = 128
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN GT+ VD +N L+ ++ + K P + +
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTVAHGTITGVDMSMNTHLKAVKMTLKGKDP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREARG 92
IRG+ +RY LP +D L+ D + +ARG
Sbjct: 59 SIRGNNIRYFILPESLPLDTLLVDDEPKSKARG 91
>gi|212528972|ref|XP_002144643.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
gi|210074041|gb|EEA28128.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
Length = 126
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCTNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|281201359|gb|EFA75571.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 150
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
F L G ++TV+L+N+ I GT+ ++D+++NI+L N + +D S I
Sbjct: 17 FNALTGSQITVQLRNENEIYGTIDTIDEHMNIELSNATLKRRDTTD---SYDLILINSRN 73
Query: 67 VRYVQLPPDGVDVDLL 82
+RY+Q+ PD +D++ L
Sbjct: 74 IRYIQI-PDRIDLNSL 88
>gi|19115525|ref|NP_594613.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe 972h-]
gi|12230564|sp|O42661.1|SMD1_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|2664241|emb|CAA15826.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe]
Length = 117
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ SVD +N L+ ++ + + P + V
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREP--VPVETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ D+T+ + +
Sbjct: 59 SIRGNNIRYYIL-PDSLPLDTLLIDDSTKPKQK 90
>gi|298709372|emb|CBJ31306.1| Small nuclear ribonucleoprotein-associated protein D1 [Ectocarpus
siliculosus]
Length = 107
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + VTVELKN + GT+ SVD +N L+N +V + K P + +
Sbjct: 1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNP--TTYDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRRE 89
IRG+ +R L PD +++D L+ DA +++
Sbjct: 59 SIRGNNIRCYIL-PDNLNLDQLLIDDAPKQK 88
>gi|320168484|gb|EFW45383.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 131
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + LV V VELKN ++GT+ VD +N L N ++ ++K P +S+
Sbjct: 1 MKLVRFLMRLVSETVIVELKNGTVVQGTIVGVDHLMNTMLRNVKLTVKNKDP--VSLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +R+ L PD + +D L
Sbjct: 59 SIRGNNIRHYIL-PDSLPLDSL 79
>gi|355755618|gb|EHH59365.1| hypothetical protein EGM_09452, partial [Macaca fascicularis]
Length = 138
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 57
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 58 CYIRGSTIKYLRIPDEIIDM 77
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+L + L VT+ELKN ++ GT+ VD +N L+ ++ + + P L +
Sbjct: 125 LLLARFLMKLNNETVTIELKNGTSVHGTITGVDPSMNTHLKKVKMTVRGREPQALD--SL 182
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ VRY L PD + +D L
Sbjct: 183 AIRGNNVRYFIL-PDSLPLDTL 203
>gi|355703322|gb|EHH29813.1| Glycine-rich protein, partial [Macaca mulatta]
gi|440903986|gb|ELR54561.1| U6 snRNA-associated Sm-like protein LSm4, partial [Bos grunniens
mutus]
Length = 139
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 58
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 CYIRGSTIKYLRIPDEIIDM 78
>gi|320592072|gb|EFX04511.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 348
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ SV +N L N ++ + + P L N +RGS +RY L P
Sbjct: 231 VTIELKNGTIVHGTIASVSPQMNTALRNVKMTPKGQDPVPLDTIN--LRGSTIRYFIL-P 287
Query: 75 DGVDVDLL 82
D + +D L
Sbjct: 288 DSLPLDTL 295
>gi|390597253|gb|EIN06653.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 130
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + + VELKN G L + D ++NI L D ++ C
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSADG-ERFWKLKEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
+IRGS ++Y+++P D L DA + E
Sbjct: 60 YIRGSTIKYLRVP------DTLLDAVKEE 82
>gi|395513176|ref|XP_003760805.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 [Sarcophilus
harrisii]
Length = 152
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 15 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 71
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 72 CYIRGSTIKYLRIPDEIIDM 91
>gi|343427423|emb|CBQ70950.1| related to small nuclear ribonucleoprotein sm d3 [Sporisorium
reilianum SRZ2]
Length = 136
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 10/78 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRNCFIRGSVV 67
+ VG +TVELK A RGTL+ + NI +++ V D K H+ N +IRG+++
Sbjct: 13 EAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHL---ENVYIRGNML 69
Query: 68 RYVQLPPDGVDVDLLHDA 85
R++ +P D+L A
Sbjct: 70 RFIIVP------DMLQQA 81
>gi|449279546|gb|EMC87118.1| U6 snRNA-associated Sm-like protein LSm4, partial [Columba livia]
Length = 138
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 58
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 CYIRGSTIKYLRIPDEIIDM 78
>gi|346978140|gb|EGY21592.1| small nuclear ribonucleoprotein Sm D1 [Verticillium dahliae
VdLs.17]
Length = 121
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPIALDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L S D ++N+ L D D++ M
Sbjct: 1 MLPLSLLKTSQGHPMLVELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRM---A 57
Query: 59 NCFIRGSVVRYVQLP 73
NC++RG+ ++Y+ +P
Sbjct: 58 NCYVRGNTIKYICVP 72
>gi|224015193|ref|XP_002297255.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968091|gb|EED86446.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S K + VELK+ G L + D Y+N+ L + V + + C+
Sbjct: 2 LPLSLLKSATTLPLLVELKSGTTYNGRLVNCDTYMNLNLRDV-VCTSKEGDKFWKLNECY 60
Query: 62 IRGSVVRYVQLPPDGVD 78
IRGS V+Y++LP D V+
Sbjct: 61 IRGSSVKYLRLPEDAVE 77
>gi|224015187|ref|XP_002297252.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968088|gb|EED86443.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 139
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S K + VELK+ G L + D Y+N+ L + V + + C+
Sbjct: 2 LPLSLLKSATTLPLLVELKSGTTYNGRLVNCDTYMNLNLRDV-VCTSKEGDKFWKLNECY 60
Query: 62 IRGSVVRYVQLPPDGVD 78
IRGS V+Y++LP D V+
Sbjct: 61 IRGSSVKYLRLPEDAVE 77
>gi|332019235|gb|EGI59745.1| U6 snRNA-associated Sm-like protein LSm4 [Acromyrmex echinatior]
Length = 138
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L + K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 LPLTLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 57
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 58 CYIRGSTIKYLRI-PDEV-IDMVKEDIQMKSRG 88
>gi|119605093|gb|EAW84687.1| LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
Length = 163
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 26 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PE 82
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 83 CYIRGSTIKYLRIPDEIIDM 102
>gi|326934546|ref|XP_003213349.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like [Meleagris
gallopavo]
Length = 174
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 38 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PE 94
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 95 CYIRGSTIKYLRIPDEIIDM 114
>gi|302411190|ref|XP_003003428.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
gi|261357333|gb|EEY19761.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
Length = 121
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPVALDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|453082226|gb|EMF10274.1| LSM domain-containing protein [Mycosphaerella populorum SO2202]
Length = 93
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE+T+ + K + + F+RG+
Sbjct: 25 FLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEFVEGKMRR--NYGDAFVRGN 82
Query: 66 VVRYVQ 71
V Y+
Sbjct: 83 NVMYIS 88
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|62858991|ref|NP_001016243.1| LSM10, U7 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|89267482|emb|CAJ81542.1| LSM10, U7 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|189441581|gb|AAI67319.1| LOC548997 protein [Xenopus (Silurana) tropicalis]
Length = 121
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TVEL+++ + GT+ +VD ++NI+L +V +D+ + + FI G
Sbjct: 21 LQGLHGHVTTVELRDESSATGTITNVDAFMNIRL--AKVTYRDRRERETELDDLFITGRN 78
Query: 67 VRYVQLPPDGVDVDLLH 83
+RYV +P +VD++H
Sbjct: 79 IRYVHIPE---EVDVIH 92
>gi|361128927|gb|EHL00852.1| putative Small nuclear ribonucleoprotein Sm D1 [Glarea lozoyensis
74030]
Length = 132
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN I GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPIALDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -LRGSTIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|336375284|gb|EGO03620.1| hypothetical protein SERLA73DRAFT_175163 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388346|gb|EGO29490.1| hypothetical protein SERLADRAFT_457290 [Serpula lacrymans var.
lacrymans S7.9]
Length = 121
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P S+ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPT--SLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + + R
Sbjct: 59 SIRGNNIRYFVL-PDALPLDTLLVDDAPKPKGR 90
>gi|219118670|ref|XP_002180103.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408360|gb|EEC48294.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 598
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 20/94 (21%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR-----VVDQD---------- 49
S + G E+TVELK RGTL S DQ +N+ LE+ +V+Q
Sbjct: 13 SLLRHFEGTELTVELKTGRLYRGTLSSADQAMNLTLEDASLLQRLIVNQQHKGAFRRGSS 72
Query: 50 --KYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDL 81
P LS+ + IRGS +R++ PD +D+ L
Sbjct: 73 SAAVPSTLSLVH--IRGSTIRFIHF-PDQLDLTL 103
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|363755190|ref|XP_003647810.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891846|gb|AET40993.1| hypothetical protein Ecym_7144 [Eremothecium cymbalariae
DBVPG#7215]
Length = 189
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + G+ + VELKN I G L +VD ++N+ L N V +L +
Sbjct: 1 MLPLYLLTNAKGQRMLVELKNGETIEGELTNVDNWMNVTLGN---VVHKGGEQVLELPEI 57
Query: 61 FIRGSVVRYVQLPPDGVD 78
++RGSV++Y++L D +D
Sbjct: 58 YVRGSVIKYIKLQDDIID 75
>gi|344283091|ref|XP_003413306.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Loxodonta africana]
Length = 151
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 14 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 70
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 71 CYIRGSTIKYLRIPDEIIDM 90
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 47 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 105
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 106 YIRGNTIKYLRVPDEVID 123
>gi|66803220|ref|XP_635453.1| hypothetical protein DDB_G0291015 [Dictyostelium discoideum AX4]
gi|74851581|sp|Q54F84.1|Y1015_DICDI RecName: Full=Putative uncharacterized protein DDB_G0291015
gi|60463760|gb|EAL61938.1| hypothetical protein DDB_G0291015 [Dictyostelium discoideum AX4]
Length = 137
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS--VRNCFIRG 64
F L G ++T++L+++ I GT+ +VD YLNI+L + ++ + +Y + V+ I+
Sbjct: 35 FTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTN-TRYKNKRDEHVQEILIQS 93
Query: 65 SVVRYVQLPPDGVDVDLL 82
+R++Q+ PD +D++ L
Sbjct: 94 RNIRFIQI-PDKIDLNSL 110
>gi|417408054|gb|JAA50600.1| Putative small nuclear ribonucleoprotein snrnp, partial [Desmodus
rotundus]
Length = 142
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 5 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 61
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 62 CYIRGSTIKYLRIPDEIIDM 81
>gi|242022404|ref|XP_002431630.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
gi|212516938|gb|EEB18892.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
Length = 122
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ ++K P ML
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNKEPVML--ETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + ++ L+ D + +A+
Sbjct: 59 TIRGNNIRYFIL-PDSLPLETLLIDDTPKSKAK 90
>gi|431891086|gb|ELK01963.1| U7 snRNA-associated Sm-like protein LSm10 [Pteropus alecto]
Length = 123
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ G + +VD ++NI+L +V D++ H + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQAELDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|426230288|ref|XP_004009208.1| PREDICTED: uncharacterized protein LOC101110507, partial [Ovis
aries]
Length = 207
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 5 VLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---P 61
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 62 ECYIRGSTIKYLRIPDEIIDM 82
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|351714204|gb|EHB17123.1| U7 snRNA-associated Sm-like protein LSm10 [Heterocephalus glaber]
Length = 123
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ +V+L+++ G + +VD ++NI+L +V D++ H + + + FI G
Sbjct: 21 LQGLQGQVTSVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFITGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|399949948|gb|AFP65604.1| small nuclear ribonucleoprotein D1 [Chroomonas mesostigmatica
CCMP1168]
Length = 90
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
F+ ++ VT+ELKN + I G + +D+++NI +N + ++ + + + + FIRG+
Sbjct: 7 FQKILEENVTIELKNGVYISGLIVDIDKHMNIYFKNAKRTLNER--NTIFIDHMFIRGNK 64
Query: 67 VRYVQLP 73
+RY+ LP
Sbjct: 65 IRYIILP 71
>gi|330802087|ref|XP_003289052.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
gi|325080886|gb|EGC34423.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
Length = 149
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G VTVELKN RGTL + +N +++N V +D + C++RGS VR++
Sbjct: 15 GHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTAKDGRNSQMEY--CYVRGSKVRFII 72
Query: 72 LPPDGVDVDLLHDA 85
LP D+L +A
Sbjct: 73 LP------DILKNA 80
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S K G+ + VELKN A G L + D ++N+ + + + +D + +
Sbjct: 3 LPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDG-DRFWKLAEAY 61
Query: 62 IRGSVVRYVQLPPDGVDVDLLH-DATR 87
IRG+ V+Y+++ PDGV VD++ DA R
Sbjct: 62 IRGNHVKYLRI-PDGV-VDMVQEDAIR 86
>gi|429965895|gb|ELA47892.1| hypothetical protein VCUG_00612 [Vavraia culicis 'floridensis']
Length = 91
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G + VELKN+ RGTL + D +N++L N R+V+ D C +RGS V++++
Sbjct: 12 GSTIDVELKNNDTYRGTLVACDLLMNLRLRNVRLVNGDGEKDF---SECILRGSAVKHIK 68
Query: 72 L 72
L
Sbjct: 69 L 69
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|326676382|ref|XP_003200562.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Danio
rerio]
Length = 120
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+LEN V+ +D+ S+ + FI G
Sbjct: 21 LQGLHGQVTTVDLRDESTARGRVINVDAFMNIRLEN--VLYRDRRGRKSSMDDLFITGRN 78
Query: 67 VRYVQLP 73
VRYV +P
Sbjct: 79 VRYVHIP 85
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRTPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|440492904|gb|ELQ75435.1| Small nuclear ribonucleoprotein (snRNP) [Trachipleistophora
hominis]
Length = 91
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G + VELKN+ RGTL + D +N++L+N R+V D C +RGS V++++
Sbjct: 12 GSVIDVELKNNDTYRGTLVACDLLMNLRLKNVRLVSSDGEKDF---NECILRGSAVKHIK 68
Query: 72 L 72
L
Sbjct: 69 L 69
>gi|405118247|gb|AFR93021.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii
H99]
Length = 129
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
M + L VT+ELKN I GT+ SVD +N L++ ++ Q LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLD 60
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLL 82
+ IRG+ +RY L PD + +D L
Sbjct: 61 SIAIRGNNIRYFIL-PDSLPLDTL 83
>gi|111226987|ref|XP_001134627.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|90971301|gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 146
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G VTVELKN RGTL + +N +++N V +D + C++RGS VR++
Sbjct: 15 GHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEY--CYVRGSKVRFII 72
Query: 72 LPPDGVDVDLLHDA 85
LP D+L +A
Sbjct: 73 LP------DILKNA 80
>gi|427778567|gb|JAA54735.1| Putative small nuclear ribonucleoprotein snrnp [Rhipicephalus
pulchellus]
Length = 167
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCF 61
S + + VELKN G L S D ++NI L D DK+ M C+
Sbjct: 29 LSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE---CY 85
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
IRGS ++Y+++ PD V +D++ + T + RG
Sbjct: 86 IRGSTIKYLRI-PDEV-IDMVKEETLIKGRG 114
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|242247021|ref|NP_001156271.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239790147|dbj|BAH71652.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDG-DRFWRLPEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
+IRGS+++Y+++P + D+ + D +ARG
Sbjct: 60 YIRGSMIKYLRIPDEIFDM-VKEDIVVNKARG 90
>gi|253735672|ref|NP_001156694.1| U6 snRNA-associated Sm-like protein [Acyrthosiphon pisum]
gi|239791415|dbj|BAH72178.1| ACYPI008634 [Acyrthosiphon pisum]
Length = 134
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVTCDSWMNINLREVICTSKDG-DRFWRLPEC 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
+IRGS+++Y+++P + D+ + D +ARG
Sbjct: 60 YIRGSMIKYLRIPDEIFDM-VKEDIVVNKARG 90
>gi|451998409|gb|EMD90873.1| hypothetical protein COCHEDRAFT_1194612 [Cochliobolus
heterostrophus C5]
Length = 89
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE + V K + F+RG+
Sbjct: 22 FLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVSDGKVTRNWG--DAFVRGN 79
Query: 66 VVRYV 70
V Y+
Sbjct: 80 NVTYI 84
>gi|344241344|gb|EGV97447.1| U6 snRNA-associated Sm-like protein LSm4 [Cricetulus griseus]
Length = 124
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE---CYIRGSTIKYLRIP- 58
Query: 75 DGVDVDLLHDATRREARGG 93
D + D R EA G
Sbjct: 59 -----DEIIDMVREEAAKG 72
>gi|403303582|ref|XP_003942405.1| PREDICTED: uncharacterized protein LOC101034609 [Saimiri
boliviensis boliviensis]
Length = 285
Score = 43.9 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 148 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PE 204
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 205 CYIRGSTIKYLRIPDEIIDM 224
>gi|340054663|emb|CCC48964.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 100
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ + L G V +EL N G + V+ +N + + ++ ++ K P + V +
Sbjct: 9 LIGFLQQLRGTLVEIELNNSTVASGEIAFVEPNMNTHMRHVKITEKGKNPEL--VETYMV 66
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
RGS +RYV LP D+L A+ ++ G
Sbjct: 67 RGSKIRYVILPEAMNTDDVLKKASAARSKSG 97
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 14 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE-- 71
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 72 -CYIRGNTIKYLRVPDEVID 90
>gi|294460720|gb|ADE75934.1| unknown [Picea sitchensis]
Length = 127
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ LVG E+ +EL+ND IRG L D +N+ ++++ + D L + F+RGS
Sbjct: 19 IQALVGTELLLELRNDTCIRGLLDDCDDAINVIIKDSLIEDVQGVEKKLPL--IFVRGSH 76
Query: 67 VRYVQLP 73
+R++ +P
Sbjct: 77 IRFIHIP 83
>gi|189028852|sp|Q0UWI9.2|LSM6_PHANO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 89
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CFI 62
+ +++G VTV+L + + +G L SVD Y+NI LE + V + + +RN F+
Sbjct: 22 FLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRV-----IRNWGDAFV 76
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 77 RGNNVTYIS 85
>gi|451848599|gb|EMD61904.1| hypothetical protein COCSADRAFT_173298 [Cochliobolus sativus
ND90Pr]
Length = 89
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE + V K + F+RG+
Sbjct: 22 FLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVSDGKVTRNWG--DAFVRGN 79
Query: 66 VVRYV 70
V Y+
Sbjct: 80 NVTYI 84
>gi|395329081|gb|EJF61470.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 112
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L VTVELKN I GT+ VD +N L+ ++ +++ P S+ + IRG+ +RY
Sbjct: 3 LNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREP--TSLDSLSIRGNNIRY 60
Query: 70 VQLPPDGVDVD--LLHDATRREAR 91
L PD + +D L+ DA + + R
Sbjct: 61 FVL-PDALPLDTLLVDDAPKPKNR 83
>gi|270007999|gb|EFA04447.1| hypothetical protein TcasGA2_TC014750 [Tribolium castaneum]
Length = 130
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 14 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 70
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 71 CYIRGSTIKYLRIPDEVIDM 90
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML G + VELK + G L S D Y+NI L+ V + H + C
Sbjct: 1 MLPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNITLKEV-VQTSPEGDHFFRLAEC 59
Query: 61 FIRGSVVRYVQLPPDGVDV 79
++RG+ ++Y+++P + VDV
Sbjct: 60 YVRGNNIKYLRVPDEVVDV 78
>gi|440640424|gb|ELR10343.1| hypothetical protein GMDG_04725 [Geomyces destructans 20631-21]
Length = 139
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN I GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTARGRDPVALDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -LRGSTIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|405977571|gb|EKC42014.1| UPF0632 protein A [Crassostrea gigas]
Length = 697
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S + V + VELKN G L S D ++NI L D D++ M
Sbjct: 8 LPLSLLRTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDRFWRM---PE 64
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 65 CYIRGSTIKYLRIPDEVIDM 84
>gi|162605962|ref|XP_001713496.1| probable small nuclear ribonucleoprotein D1 [Guillardia theta]
gi|13794421|gb|AAK39798.1|AF083031_162 probable small nuclear ribonucleoprotein D1 [Guillardia theta]
Length = 77
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M +++ K L G E+ +ELKN++ I G + +VD+ +N+K+ N +D D N
Sbjct: 1 MKIYNFIKQLKGEEIIIELKNNIIIMGVIVNVDKNMNLKVSNISDIDIDGQKFFKG--NL 58
Query: 61 FIRGSVVRYVQLPP 74
IR + +R + LP
Sbjct: 59 SIRFNNIRIMVLPS 72
>gi|406867718|gb|EKD20756.1| small nuclear ribonucleoprotein Sm D1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 128
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN I GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -LRGSTIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|315050300|ref|XP_003174524.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|327303162|ref|XP_003236273.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|311339839|gb|EFQ99041.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|326461615|gb|EGD87068.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|326471350|gb|EGD95359.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton tonsurans CBS
112818]
Length = 125
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P +S+ +
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDP--ISLDSI 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 59 NIRGSTIRYYIL-PDSLPLDTL 79
>gi|296813285|ref|XP_002846980.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
gi|238842236|gb|EEQ31898.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
Length = 125
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P +S+ +
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDP--ISLDSI 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 59 NIRGSTIRYYIL-PDSLPLDTL 79
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L + + G + VELK G + + D ++N+ L++ D H + +C+
Sbjct: 2 LPLTLLRAANGSPILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGE-HFSKLPSCY 60
Query: 62 IRGSVVRYVQLPP 74
IRGS ++Y++LPP
Sbjct: 61 IRGSSIKYLRLPP 73
>gi|295673314|ref|XP_002797203.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225681042|gb|EEH19326.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb03]
gi|226282575|gb|EEH38141.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226292265|gb|EEH47685.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb18]
Length = 121
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTTKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|195384890|ref|XP_002051145.1| GJ13818 [Drosophila virilis]
gi|194147602|gb|EDW63300.1| GJ13818 [Drosophila virilis]
Length = 140
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L + D D++ M CFIRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE---CFIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EVIDM 64
>gi|169770091|ref|XP_001819515.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus oryzae RIB40]
gi|238487546|ref|XP_002375011.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|83767374|dbj|BAE57513.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699890|gb|EED56229.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|391864024|gb|EIT73322.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 123
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|307195781|gb|EFN77595.1| U6 snRNA-associated Sm-like protein LSm4 [Harpegnathos saltator]
Length = 138
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S + + VELKN G L S D ++N+ L D DK+ M
Sbjct: 1 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNVNLREVICTSRDGDKFWRMPE--- 57
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 58 CYIRGSTIKYLRI-PDEV-IDMVKEDVQMKSRG 88
>gi|242007513|ref|XP_002424584.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212508027|gb|EEB11846.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 126
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++YV++P
Sbjct: 3 VELKNGETYNGHLVSCDNWMNIILREVICTSRDGDKFWRMPE---CYIRGSTIKYVRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EVIDM 64
>gi|301090235|ref|XP_002895342.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
Length = 105
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L VT+ELKN + GT+ VD +N L+ ++ + K P +++ + IRG+ +RY
Sbjct: 3 LSNETVTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNP--VNLDSLSIRGNNIRY 60
Query: 70 VQLPPDGVDVD--LLHDATRREARGG 93
L PD +++D L+ D R + + G
Sbjct: 61 YIL-PDSLNLDTLLIDDTPREKVKAG 85
>gi|331241854|ref|XP_003333574.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312564|gb|EFP89155.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 122
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLIRFLMKLNQETVTIELKNGTVVHGTISGVDVAMNTHLKAVKMTVRNREPVQLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS VRY+ L PD + +D L
Sbjct: 59 SIRGSNVRYIIL-PDSLPLDTL 79
>gi|261195138|ref|XP_002623973.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239587845|gb|EEQ70488.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239610667|gb|EEQ87654.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|383858764|ref|XP_003704869.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Megachile
rotundata]
Length = 158
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S + + VELKN G L S D ++NI L D DK+ M
Sbjct: 21 LPLSLLRTAQNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPE--- 77
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
C+IRGS ++Y+++ PD V +D++ + + ++RG
Sbjct: 78 CYIRGSTIKYLRI-PDEV-IDMVKEDIQMKSRG 108
>gi|145243932|ref|XP_001394478.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus niger CBS
513.88]
gi|134079163|emb|CAK40691.1| unnamed protein product [Aspergillus niger]
gi|350631277|gb|EHA19648.1| hypothetical protein ASPNIDRAFT_47972 [Aspergillus niger ATCC
1015]
gi|358367165|dbj|GAA83784.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus kawachii IFO
4308]
Length = 121
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|67523297|ref|XP_659709.1| hypothetical protein AN2105.2 [Aspergillus nidulans FGSC A4]
gi|40745781|gb|EAA64937.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487477|tpe|CBF86187.1| TPA: small nuclear ribonucleoprotein SmD1, putative
(AFU_orthologue; AFUA_2G05110) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|213624559|gb|AAI71268.1| hypothetical protein LOC548997 [Xenopus (Silurana) tropicalis]
Length = 121
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TVEL+++ + GT+ +VD ++NI+L +V +D+ + + F+ G
Sbjct: 21 LQGLHGHVTTVELRDESSATGTITNVDAFMNIRL--AKVTYRDRRERETELDDLFVTGRN 78
Query: 67 VRYVQLPPDGVDVDLLH 83
+RYV +P +VD++H
Sbjct: 79 IRYVHIPE---EVDVIH 92
>gi|149571864|ref|XP_001512156.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like, partial
[Ornithorhynchus anatinus]
Length = 138
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K VELKN G L S D ++NI L D DK+ M
Sbjct: 1 LPLSLLKTAQNHPYLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE--- 57
Query: 60 CFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 58 CYIRGSTIKYLRIPDEIIDM 77
>gi|115399152|ref|XP_001215165.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
gi|114192048|gb|EAU33748.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
Length = 121
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|50309757|ref|XP_454891.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|15072878|emb|CAC48005.1| hypothetical protein [Kluyveromyces lactis]
gi|49644026|emb|CAG99978.1| KLLA0E20813p [Kluyveromyces lactis]
Length = 183
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + G+ + VELKN + GTL VD ++N+ L N V + L + +
Sbjct: 1 MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNVTHVASGE---TLKLPSF 57
Query: 61 FIRGSVVRYVQLPPDGVD 78
+++GS ++YV L D +D
Sbjct: 58 YLKGSFIKYVNLQDDIID 75
>gi|452837704|gb|EME39646.1| hypothetical protein DOTSEDRAFT_66594 [Dothistroma septosporum
NZE10]
Length = 91
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE+T+ + K + + F+RG+
Sbjct: 22 FLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDTKEYVEGKLRR--NYGDAFVRGN 79
Query: 66 VVRYVQ 71
V Y+
Sbjct: 80 NVMYIS 85
>gi|154281585|ref|XP_001541605.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411784|gb|EDN07172.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225563163|gb|EEH11442.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces capsulatus
G186AR]
Length = 123
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTAKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|183234262|ref|XP_001913982.1| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|183237106|ref|XP_655345.2| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|169799375|gb|EAL49955.2| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|169801178|gb|EDS89240.1| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702378|gb|EMD43029.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 107
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELK+ + GT+ VD Y+N+ L+ ++ + K P +++
Sbjct: 1 MKLVRFLMRLTNEVVTIELKSGAVLTGTIVGVDNYMNVHLKVVKMTQKGKNP--INLDQS 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREARGG 93
+RG+ +R + LP +D L+ D R + +
Sbjct: 59 TVRGNTIRNIILPESLNLDTYLVDDTPRLKVKAA 92
>gi|91084013|ref|XP_975325.1| PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA
associated [Tribolium castaneum]
Length = 163
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++Y+++P
Sbjct: 29 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE---CYIRGSTIKYLRIPD 85
Query: 75 DGVDV 79
+ +D+
Sbjct: 86 EVIDM 90
>gi|189028859|sp|A1CE19.2|LSM6_ASPCL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 78
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE ++ K S + FIRG
Sbjct: 13 AFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR--SYGDAFIRG 70
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 71 NNVLYI 76
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C++RG+ ++Y+++P + +D
Sbjct: 59 -CYVRGNTIKYLRVPDEVID 77
>gi|389747560|gb|EIM88738.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 123
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P S+ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPS--SLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + +++
Sbjct: 59 SIRGNNIRYFVL-PDSLPLDTLLVDDAPKPKSK 90
>gi|260943870|ref|XP_002616233.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
gi|238849882|gb|EEQ39346.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
Length = 115
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + VTVELKN ++ G + S +N+ ++N +++ + P ++ N I
Sbjct: 6 FLMTLPSATNQPVTVELKNGNSVNGQILSCSPSMNLSMKNIKLIQPHQDPQLMQFMN--I 63
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RG+ +R + L PD ++++ L + + +G
Sbjct: 64 RGNQIRQILL-PDDLNIESLLSRSTVKMKG 92
>gi|156336212|ref|XP_001619663.1| hypothetical protein NEMVEDRAFT_v1g223956 [Nematostella
vectensis]
gi|156203311|gb|EDO27563.1| predicted protein [Nematostella vectensis]
Length = 128
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L+ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREP--MQLESL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|38047763|gb|AAR09784.1| similar to Drosophila melanogaster CG17768, partial [Drosophila
yakuba]
Length = 152
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCF 61
S K + VELKN G L S D ++NI L + D D++ M C+
Sbjct: 2 LSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE---CY 58
Query: 62 IRGSVVRYVQLPPDGVDV 79
IRGS ++Y+++P + +D+
Sbjct: 59 IRGSTIKYLRIPDEVIDM 76
>gi|448515600|ref|XP_003867370.1| Smx3 protein [Candida orthopsilosis Co 90-125]
gi|380351709|emb|CCG21932.1| Smx3 protein [Candida orthopsilosis]
Length = 130
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 6 YFKDLVGREVTVELK-NDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
+ K L+G++V V LK N RG L S D YLN++L+NT + D + P ++ + FI
Sbjct: 12 FMKSLIGKQVVVRLKWNKTEYRGQLISTDNYLNLQLDNTFEIIYDNEDKPREEAIGSIFI 71
Query: 63 RGSVVRYV 70
R + V ++
Sbjct: 72 RCNNVLFI 79
>gi|307111075|gb|EFN59310.1| hypothetical protein CHLNCDRAFT_29459 [Chlorella variabilis]
Length = 115
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ L +V +ELKN + GT+ VD +N L+ ++V + + P ++V I
Sbjct: 4 LVRFLMKLANEKVQIELKNGTVVYGTITGVDVAMNTHLKTVKLVPKGQNP--ITVAQMSI 61
Query: 63 RGSVVRYVQLPPDGVDVDLL 82
RG+ +RY L PD +++D L
Sbjct: 62 RGNNIRYYIL-PDSLNLDTL 80
>gi|348571487|ref|XP_003471527.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Cavia
porcellus]
Length = 123
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ G + +VD ++NI+L +V D+ H + + + FI G
Sbjct: 21 LQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRRGHQVELDDLFITGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|167377383|ref|XP_001734381.1| small nuclear ribonucleoprotein sm D1 [Entamoeba dispar SAW760]
gi|165904137|gb|EDR29468.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba dispar
SAW760]
Length = 107
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELK+ + + GT+ VD Y+N+ L+ ++ + K P + +
Sbjct: 1 MKLVRFLMRLTNEVVTIELKSGVILTGTIVGVDNYMNVHLKVVKMTQKGKNP--IDLDQS 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREARGG 93
+RG+ +R + LP +D L+ D R + +
Sbjct: 59 TVRGNTIRNIILPESLNLDTYLVDDTPRLKVKAA 92
>gi|123485483|ref|XP_001324496.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121907380|gb|EAY12273.1| hypothetical protein TVAG_160790 [Trichomonas vaginalis G3]
Length = 111
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR-- 58
M + + LV VTVELK++ I+GT+ VD +N L + K P R
Sbjct: 1 MKLVHFLRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLRLVHI----KAPGQEEKRLE 56
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLL 82
N IRG+ +RYV L PD +++D L
Sbjct: 57 NLTIRGASIRYVIL-PDVLNLDTL 79
>gi|392591224|gb|EIW80552.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 127
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L D D++ ++
Sbjct: 1 MLPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P +DV
Sbjct: 58 ECYIRGSTIKYLRVPDQLLDV 78
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
Query: 59 NCFIRGSVVRYVQLPPD---GVD 78
C+IRG+ ++Y+++P + GVD
Sbjct: 58 ECYIRGNTIKYLRVPDEVCNGVD 80
>gi|396483691|ref|XP_003841766.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
gi|312218341|emb|CBX98287.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
Length = 222
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VTVELKN + GT+ SV +N+ L + + + +++ + +RGS +RYV L P
Sbjct: 106 VTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSR--DTVALDSMTVRGSTIRYVIL-P 162
Query: 75 DGVDVD--LLHDATRREARG 92
D + +D L+ DA + + +
Sbjct: 163 DSLPLDTLLIDDAPKPKNKA 182
>gi|281343535|gb|EFB19119.1| hypothetical protein PANDA_000549 [Ailuropoda melanoleuca]
Length = 96
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE---CYIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EIIDM 64
>gi|139948936|ref|NP_001077250.1| U7 snRNA-associated Sm-like protein LSm10 [Bos taurus]
gi|426215182|ref|XP_004001853.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Ovis aries]
gi|134024772|gb|AAI34670.1| LSM10 protein [Bos taurus]
gi|296488939|tpg|DAA31052.1| TPA: LSM10, U7 small nuclear RNA associated [Bos taurus]
gi|440908593|gb|ELR58596.1| U7 snRNA-associated Sm-like protein LSm10 [Bos grunniens mutus]
Length = 122
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRL--AQVTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PD V++
Sbjct: 79 VRYVHI-PDNVNI 90
>gi|409048487|gb|EKM57965.1| hypothetical protein PHACADRAFT_251891 [Phanerochaete carnosa
HHB-10118-sp]
Length = 122
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P S+ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDP--TSLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + + R
Sbjct: 59 SIRGNNIRYFVL-PDALPLDTLLVDDAPKPKNR 90
>gi|407040985|gb|EKE40459.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 107
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELK+ + GT+ VD Y+N+ L+ ++ + K P +++
Sbjct: 1 MKLVRFLMRLTNEVVTIELKSGAILTGTIVGVDNYMNVHLKVVKMTQKGKNP--INLDQS 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREARGG 93
+RG+ +R + LP +D L+ D R + +
Sbjct: 59 TVRGNTIRNIILPESLNLDTYLVDDTPRLKVKAA 92
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+ RG+ ++Y+++P + +D
Sbjct: 59 -CYXRGNTIKYLRVPDEVID 77
>gi|156086674|ref|XP_001610746.1| small nuclear ribonucleoprotein Sm subunit [Babesia bovis T2Bo]
gi|154797999|gb|EDO07178.1| small nuclear ribonucleoprotein Sm subunit, putative [Babesia
bovis]
Length = 125
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD----KYPHMLS 56
M + L VTVELKN + GT+ VD +N L+N ++V++D P+ +
Sbjct: 1 MKLVRFLMKLANESVTVELKNGTVLTGTVIGVDISMNTHLKNVKIVNKDSGSGSEPNYIL 60
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVD-LLHDATRRE 89
+ + +RG+ +RY L D + +D LL D T ++
Sbjct: 61 LDHLTVRGNNIRYFIL-SDSLPLDTLLIDDTPKQ 93
>gi|145344169|ref|XP_001416610.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576836|gb|ABO94903.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 123
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVDQDKYPHMLSVRNCFIR 63
+ + LVG V +E ++D+A+RG L D+ ++ L N RV + H + F+R
Sbjct: 14 CFIQALVGTTVVIECRDDVALRGHLEQCDEGMHCTLTNAIRVTPEG---HKTKLERVFVR 70
Query: 64 GSVVRYVQLPP 74
++RYV P
Sbjct: 71 ARMIRYVHFAP 81
>gi|170041265|ref|XP_001848390.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
gi|167864864|gb|EDS28247.1| small nuclear ribonucleoprotein sm [Culex quinquefasciatus]
Length = 156
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++Y+++P
Sbjct: 4 VELKNGETYNGHLVSCDTWMNINLREVICTSKDGDKFWRMPE---CYIRGSTIKYLRIPD 60
Query: 75 DGVDV 79
+ +D+
Sbjct: 61 EVIDM 65
>gi|406603457|emb|CCH45013.1| putative U6 snRNA-associated Sm-like protein LSm4
[Wickerhamomyces ciferrii]
Length = 112
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN I+GT+ SV +NI L+ ++ +++ P +L N
Sbjct: 1 MKLVRFLMKLNNETVQIELKNQTIIQGTIISVSPNMNIILKKVKMNIKNRDPQLLDYIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+++R V L PD +++D+L
Sbjct: 60 -IRGNMIRDVIL-PDSLNLDVL 79
>gi|348673931|gb|EGZ13750.1| hypothetical protein PHYSODRAFT_347058 [Phytophthora sojae]
Length = 153
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S K G + VELKN G L + D ++N+ L +D + C+
Sbjct: 4 LPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDG-DRFWKMPECY 62
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
IRG+ ++Y+++P + +D+ D ++R+ +
Sbjct: 63 IRGNTIKYIRVPNEILDMVNEEDFSKRDRQA 93
>gi|300176808|emb|CBK25377.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L VT+ELKN I GT+ VD +N L+ ++ + + P +S+ + +RGS +RY
Sbjct: 3 LSNETVTIELKNGTIIVGTITGVDVAMNTHLKAVKMTIKGRNP--VSLDSMSVRGSNIRY 60
Query: 70 VQLPPDGVDVD 80
V L PD +++D
Sbjct: 61 VIL-PDSINLD 70
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+L S K G+ + VELKN A G L + D ++N+ + + + +D +
Sbjct: 2 VLPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDG-DRFWKLAEA 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
+IRG+ ++Y+++ PDGV VD++ + R R
Sbjct: 61 YIRGNHIKYLRI-PDGV-VDMVQEDAIRLQR 89
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis
subvermispora B]
Length = 132
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L + D++ ++
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSAEGDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRGS ++Y+++P D L DA + E
Sbjct: 58 ECYIRGSTIKYLRVP------DTLLDAVKEE 82
>gi|392577177|gb|EIW70307.1| hypothetical protein TREMEDRAFT_29897 [Tremella mesenterica DSM
1558]
Length = 126
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHM--LSVRNCFIRGSVVRYVQL 72
VT+ELKN I GT+ SVD + L++ ++ + P +S+ + IRG+ +RY L
Sbjct: 8 VTMELKNGTVIHGTITSVDPAMTTHLKSVKMTLRSSPPGTPPISLDSIAIRGNNIRYYVL 67
Query: 73 PPDGVDVD--LLHDATRREAR 91
PD + +D L+ DA R + R
Sbjct: 68 -PDSLPLDTLLVDDAPRAKKR 87
>gi|448080879|ref|XP_004194749.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359376171|emb|CCE86753.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 130
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + + VELKN + G L + D ++N+ L N V ++ + L + C
Sbjct: 1 MLPLYLLTSAKNQPILVELKNGETLNGELVNCDSWMNLTLNNVVQVSENG-TNFLKLPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
++RG+ ++Y++LP + +D
Sbjct: 60 YVRGNHIKYMRLPEELMD 77
>gi|256083180|ref|XP_002577827.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
gi|360044788|emb|CCD82336.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
Length = 142
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + K + VELK+ G L + D ++NI L+ +D + C
Sbjct: 1 MLPVTLLKAATNLPMLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDG-DRFWKMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRGS+++Y+++P D +D
Sbjct: 60 YIRGSIIKYLRIPDDVID 77
>gi|294654851|ref|XP_456936.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
gi|199429198|emb|CAG84914.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
Length = 131
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + +TVELKN +I G + S +N+ ++N ++ + P +L N I
Sbjct: 6 FLMNLPNATNQPITVELKNGNSINGQILSCSPSMNLSMKNIKLSQPHQDPQLLQFIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVD 80
RG+ +R + L PD ++VD
Sbjct: 64 RGNQIRQILL-PDELNVD 80
>gi|156369567|ref|XP_001628047.1| predicted protein [Nematostella vectensis]
gi|156215013|gb|EDO35984.1| predicted protein [Nematostella vectensis]
Length = 120
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L+ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREP--MQLESL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV-----DQDKYPHMLS 56
L S K G + VELKN G L S D ++NI L D D++ M
Sbjct: 2 LPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRM-- 59
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
C+IRG+ ++Y+++ PD V +D + + T+R R
Sbjct: 60 -PECYIRGNTIKYLRV-PDEV-IDKVQEETKRSDR 91
>gi|126345432|ref|XP_001373339.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm4-like, partial
[Monodelphis domestica]
Length = 124
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++Y+++P
Sbjct: 2 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE---CYIRGSTIKYLRIPD 58
Query: 75 DGVDV 79
+ +D+
Sbjct: 59 EIIDM 63
>gi|68473251|ref|XP_719431.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|46441248|gb|EAL00547.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|238880442|gb|EEQ44080.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 116
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + +TVELKN I GTL S + +N+ L+N R+ + P +L N I
Sbjct: 6 FLMNIPNSTNQPITVELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPILLQYIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RG+ VR + L PD ++++ + + + +G
Sbjct: 64 RGNQVRQILL-PDELNIESVLAKSETKIKG 92
>gi|321252513|ref|XP_003192431.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|317458899|gb|ADV20644.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
Length = 121
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVV 67
L VT+ELKN I GT+ SVD +N L++ ++ Q LS+ + IRG+ +
Sbjct: 3 LNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGNNI 62
Query: 68 RYVQLPPDGVDVDLL 82
RY L PD + +D L
Sbjct: 63 RYFIL-PDSLPLDTL 76
>gi|255722764|ref|XP_002546316.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240130833|gb|EER30395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 129
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + VTVELKN I GT+ S + +N+ L+N ++ + P +L N I
Sbjct: 6 FLMNIPNSTNQPVTVELKNGNVISGTMLSCNPSMNLNLKNVKLQQPLQDPILLDFIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RG+ VR + L PD ++++ + + + +G
Sbjct: 64 RGNQVRQIIL-PDELNIESVLSKSETKIKG 92
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
+L S K G+ + VELKN A G L + D ++N+ + + + +D +
Sbjct: 2 VLPMSLLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDG-DRFWKLAEA 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
+IRG+ ++Y+++ PDGV VD++ + R R
Sbjct: 61 YIRGNHIKYLRI-PDGV-VDMVQEDAIRLQR 89
>gi|58262702|ref|XP_568761.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108736|ref|XP_777021.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259704|gb|EAL22374.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223411|gb|AAW41454.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 121
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVV 67
L VT+ELKN I GT+ SVD +N L++ ++ Q LS+ + IRG+ +
Sbjct: 3 LNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGNNI 62
Query: 68 RYVQLPPDGVDVDLL 82
RY L PD + +D L
Sbjct: 63 RYFIL-PDSLPLDTL 76
>gi|428171321|gb|EKX40239.1| hypothetical protein GUITHDRAFT_43352, partial [Guillardia theta
CCMP2712]
Length = 70
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ DL G V V+LK + +G L S D Y+NI+LENT+ +D++ L IR +
Sbjct: 7 FLADLTGLSVVVKLKWGMEYKGVLKSTDNYMNIQLENTQEFIEDQFQGDLG--EVLIRCN 64
Query: 66 VVRYVQ 71
V YV+
Sbjct: 65 NVLYVR 70
>gi|409044160|gb|EKM53642.1| hypothetical protein PHACADRAFT_260106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 130
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L + DK+ ++
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P +DV
Sbjct: 58 ECYIRGSTIKYLRVPDQLLDV 78
>gi|209881474|ref|XP_002142175.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557781|gb|EEA07826.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 126
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+G +++E+K+ RGTL V+ +N L+ V +D P L++ C++RGS +R+
Sbjct: 14 LGHIISIEMKSGDLYRGTLAHVEDNMNCMLDTVNVTMKDGRP--LALEQCYLRGSQIRFF 71
Query: 71 QLPPDGVDVDLLHDA 85
LP D+L +A
Sbjct: 72 ILP------DMLKNA 80
>gi|407921547|gb|EKG14689.1| hypothetical protein MPH_08162 [Macrophomina phaseolina MS6]
Length = 80
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
+ +++G VTV+L + + +G L SVD Y+NI LE T+ + K + + F+RG
Sbjct: 13 GFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQTKEYVEGKLRR--NYGDAFVRG 70
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 71 NNVMYIS 77
>gi|430813206|emb|CCJ29431.1| unnamed protein product [Pneumocystis jirovecii]
Length = 639
Score = 43.1 bits (100), Expect = 0.022, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G + VELKN G + S D ++N+ L+ + D + C+IRGS ++Y++
Sbjct: 521 GYPMLVELKNGETYNGHMVSCDTWMNLILKEVIQTNADG-DRFFRLSECYIRGSTIKYLR 579
Query: 72 LPPDGVDVDLLHDATRREAR 91
+P + +++ L + R+ R
Sbjct: 580 IPDEIINIVKLQNEQNRDNR 599
>gi|149235059|ref|XP_001523408.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452817|gb|EDK47073.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 125
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + +TVELKN + GTL S + +N+ L+N ++ + P +L N I
Sbjct: 6 FLMNVPNSTNQPITVELKNGNIVNGTLLSANPQMNLNLKNVKLQQLYQDPILLQYIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVDLLHDATRREARG 92
RG+ +R + L PD +++D + + ++ + +G
Sbjct: 64 RGNQIRQILL-PDDLNIDGVLEKSQTKIKG 92
>gi|393212701|gb|EJC98200.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 119
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P S+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTMRNRDPQ--SLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ DA + + R
Sbjct: 59 SIRGNNIRYFVL-PDALPLDTLLVDDAPKPKNR 90
>gi|223974607|gb|ACN31491.1| unknown [Zea mays]
Length = 146
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VE KN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVEPKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>gi|355477275|ref|NP_001239058.1| U6 snRNA-associated Sm-like protein LSm4 isoform 2 [Homo sapiens]
gi|395750752|ref|XP_003779150.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pongo abelii]
gi|397493883|ref|XP_003817825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Pan paniscus]
gi|402904784|ref|XP_003915220.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Papio anubis]
gi|426387788|ref|XP_004060344.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4 isoform 2
[Gorilla gorilla gorilla]
gi|431922013|gb|ELK19186.1| U6 snRNA-associated Sm-like protein LSm4 [Pteropus alecto]
Length = 125
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L D DK+ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE---CYIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EIIDM 64
>gi|254578406|ref|XP_002495189.1| ZYRO0B05456p [Zygosaccharomyces rouxii]
gi|238938079|emb|CAR26256.1| ZYRO0B05456p [Zygosaccharomyces rouxii]
Length = 143
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 23/103 (22%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV--------------- 45
M ++ K L +VTVELKN + GTL +V +N L + R+
Sbjct: 3 MKLVNFLKKLRNEQVTVELKNGTTVWGTLQTVSPQMNATLTDVRLSLPRSTSNSSTLASV 62
Query: 46 ------VDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLL 82
+ Q++ P S++ IRGS +R + L PD +++D L
Sbjct: 63 YLSDGSLSQNE-PSTTSLQYINIRGSTIRQIIL-PDSLNIDSL 103
>gi|189028850|sp|A1DM27.2|LSM6_NEOFI RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + RG L SVD Y+NI LE + K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRR--SYGDAFIRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELK+ G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP--- 57
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
+C+IRG+ ++Y+++P + +D
Sbjct: 58 DCYIRGNTIKYLRVPDEVID 77
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + G + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLRTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++Y+++P + +D
Sbjct: 60 YIRGNTIKYLRVPDEVID 77
>gi|168068658|ref|XP_001786159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662031|gb|EDQ49029.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 111
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L V++ELKN + GT+ VD +N L++ ++ + K P +S+ + IRG+
Sbjct: 2 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLKGKVP--VSLDHLSIRGN 59
Query: 66 VVRYVQLPPDGVDVD--LLHDATRREAR 91
+RY L PD +++D L+ D R +A+
Sbjct: 60 NIRYYIL-PDSLNLDTLLVDDTPRVKAK 86
>gi|410910972|ref|XP_003968964.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Takifugu
rubripes]
Length = 119
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTPKNREPTQL--ESL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|358379099|gb|EHK16780.1| hypothetical protein TRIVIDRAFT_184162 [Trichoderma virens
Gv29-8]
Length = 83
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR---NCF 61
S+ D++G V V+L + + +G L SVD Y+NI LE T +Y + + R + F
Sbjct: 16 SFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKTA-----EYVNGVKRREYGDTF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>gi|195339803|ref|XP_002036506.1| GM11687 [Drosophila sechellia]
gi|194130386|gb|EDW52429.1| GM11687 [Drosophila sechellia]
Length = 140
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L + D D++ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE---CYIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EVIDM 64
>gi|409080918|gb|EKM81278.1| hypothetical protein AGABI1DRAFT_112946 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197836|gb|EKV47763.1| hypothetical protein AGABI2DRAFT_192916 [Agaricus bisporus var.
bisporus H97]
Length = 131
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L D D++ ++
Sbjct: 1 MLPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA----RGG 93
C+IRGS ++Y+++P +D REA RGG
Sbjct: 58 ECYIRGSTIKYLRVPDTLLDQVKEEQNRAREANRNSRGG 96
>gi|198470479|ref|XP_002133476.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
gi|198145470|gb|EDY72104.1| GA22792 [Drosophila pseudoobscura pseudoobscura]
Length = 137
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L + D D++ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE---CYIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EVIDM 64
>gi|353238410|emb|CCA70357.1| probable small nuclear ribonucleoprotein SNRPD1 [Piriformospora
indica DSM 11827]
Length = 123
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ R+ +++ P L +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVRLTARNRDPQPLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDALPLDTL 79
>gi|367020370|ref|XP_003659470.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
gi|347006737|gb|AEO54225.1| hypothetical protein MYCTH_2115074 [Myceliophthora thermophila
ATCC 42464]
Length = 83
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR---NCF 61
S+ +++G VTV+L + + +G L SVD Y+NI LE T ++Y + R + F
Sbjct: 17 SFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEYVNGTKRRTYGDTF 71
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 72 VRGNNVMYIS 81
>gi|301108373|ref|XP_002903268.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
gi|262097640|gb|EEY55692.1| U6 snRNA-associated Sm-like protein LSm4, putative [Phytophthora
infestans T30-4]
Length = 79
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++N+ L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDG-DRFWKMPEC 59
Query: 61 FIRGSVVRYVQLP 73
+IRG+ ++Y+++P
Sbjct: 60 YIRGNTIKYIRVP 72
>gi|156084564|ref|XP_001609765.1| small nuclear ribonucleoprotein (snRNP) [Babesia bovis T2Bo]
gi|154797017|gb|EDO06197.1| small nuclear ribonucleoprotein (snRNP), putative [Babesia bovis]
Length = 110
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
F + +G VTVE++N RGTL +V+ +N LE +V +D L++ F+RG+
Sbjct: 10 FYEGIGHIVTVEMQNSQLYRGTLVNVEDNMNCLLEGVTMVMKDG--KTLALEQVFLRGAQ 67
Query: 67 VRYVQLP 73
+R+V P
Sbjct: 68 IRFVIFP 74
>gi|440634891|gb|ELR04810.1| U6 snRNA-associated Sm-like protein LSm6 [Geomyces destructans
20631-21]
Length = 83
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN-TRVVDQDKYPHMLSVRNCFIR 63
+ +++ VTV+L + + +G+L SVD Y+NI LEN T VD + S + FIR
Sbjct: 17 GFLGEIINSAVTVKLNSGVVYKGSLQSVDGYMNIALENCTEHVDGAR---RRSYGDAFIR 73
Query: 64 GSVVRYVQ 71
G+ V Y+
Sbjct: 74 GNNVMYIS 81
>gi|440804582|gb|ELR25459.1| small nuclear ribonucleoprotein Sm D1, putative [Acanthamoeba
castellanii str. Neff]
Length = 125
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++
Sbjct: 1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNP--INLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRR 88
IRG+ +RY L PD +++D LL D T R
Sbjct: 59 SIRGNNIRYYLL-PDTLNLDTLLVDDTPR 86
>gi|358391553|gb|EHK40957.1| hypothetical protein TRIATDRAFT_301687 [Trichoderma atroviride
IMI 206040]
Length = 120
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N+ L ++ + + L N
Sbjct: 1 MKLVRFLMKCSNETVTVELKNGTIVHGTISSVSPQMNVALRTVKMTARGQDSLALDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|170291130|ref|YP_001737946.1| like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175210|gb|ACB08263.1| Like-Sm ribonucleoprotein core [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 78
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S+ K G EVTV LKN I G L D+ +N+ L++ R VD SV F
Sbjct: 7 LPLSHLKKSHGAEVTVRLKNGSQIVGKLIVYDEMMNLVLDSAREVDPASGEVKRSVGTLF 66
Query: 62 IRGSVVRYVQL 72
IRG+ V +V L
Sbjct: 67 IRGNNVLFVTL 77
>gi|299742717|ref|XP_001832694.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
gi|298405314|gb|EAU89114.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
Length = 136
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ L VT+ELKN + GT+ VD +N L+ ++ +++ P S+ IRG
Sbjct: 21 AFLMKLNNETVTIELKNGAVVHGTITGVDMQMNTFLKTVKMTMRNREPT--SLDTLSIRG 78
Query: 65 SVVRYVQLPPDGVDVD--LLHDATRREAR 91
+ +RY L PD + +D L+ DA + + R
Sbjct: 79 NNIRYFIL-PDALPLDTLLVDDAPKPKHR 106
>gi|301108303|ref|XP_002903233.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
gi|262097605|gb|EEY55657.1| U6 snRNA-associated Sm-like protein [Phytophthora infestans
T30-4]
Length = 82
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K G + VELKN G L + D ++N+ L +D + C
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGDTYNGHLVNCDTWMNVNLREVICTSKDG-DRFWKMPEC 59
Query: 61 FIRGSVVRYVQLP 73
+IRG+ ++Y+++P
Sbjct: 60 YIRGNTIKYIRVP 72
>gi|224082027|ref|XP_002198423.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TVEL+++ A G + SVD ++N++L D+ L F+ G
Sbjct: 21 LQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRQGAVSQLD--ELFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
+RYV + PD VD+
Sbjct: 79 IRYVHI-PDEVDI 90
>gi|367043476|ref|XP_003652118.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
gi|346999380|gb|AEO65782.1| hypothetical protein THITE_2170099 [Thielavia terrestris NRRL
8126]
Length = 82
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVDQDKYPHMLSVRNCFIR 63
+ +++G VTV+L + + +G L SVD Y+NI LE T VD K S + F+R
Sbjct: 16 GFLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGVK---RRSYGDAFVR 72
Query: 64 GSVVRYVQ 71
G+ V Y+
Sbjct: 73 GNNVMYIS 80
>gi|341892180|gb|EGT48115.1| hypothetical protein CAEBREN_25098 [Caenorhabditis brenneri]
gi|341901485|gb|EGT57420.1| CBN-SNR-3 protein [Caenorhabditis brenneri]
Length = 126
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L + ++K P + +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEP--VKLDTL 58
Query: 61 FIRGSVVRYVQLP-PDGVDVDLLHDATRRE 89
IRG+ +RY+ LP P +D L+ D R++
Sbjct: 59 SIRGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|308502654|ref|XP_003113511.1| CRE-SNR-3 protein [Caenorhabditis remanei]
gi|308263470|gb|EFP07423.1| CRE-SNR-3 protein [Caenorhabditis remanei]
Length = 127
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L + ++K P + +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEP--VKLDTL 58
Query: 61 FIRGSVVRYVQLP-PDGVDVDLLHDATRRE 89
IRG+ +RY+ LP P +D L+ D R++
Sbjct: 59 SIRGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|17536583|ref|NP_495306.1| Protein SNR-3 [Caenorhabditis elegans]
gi|2833218|sp|Q10013.1|SMD1_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|351064345|emb|CCD72707.1| Protein SNR-3 [Caenorhabditis elegans]
Length = 126
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L + ++K P + +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEP--VKLDTL 58
Query: 61 FIRGSVVRYVQLP-PDGVDVDLLHDATRRE 89
IRG+ +RY+ LP P +D L+ D R++
Sbjct: 59 SIRGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|401826734|ref|XP_003887460.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|395459978|gb|AFM98479.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 71
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ VGR V V++ + RGT ++D YLNI LE+ + + P S + FI+GS
Sbjct: 6 YTAFVGRAVKVKICDSSEFRGTSVAIDAYLNISLESVSYIQNGQEPRYYS--SLFIKGSY 63
Query: 67 VRYVQL 72
+ ++ L
Sbjct: 64 IDHIAL 69
>gi|358378050|gb|EHK15733.1| hypothetical protein TRIVIDRAFT_64379 [Trichoderma virens Gv29-8]
Length = 120
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N+ L ++ + + L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTISSVTPQMNVALRTVKMTARGQDSIALDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|146322817|ref|XP_749642.2| small nuclear ribonucleoprotein SmD1 [Aspergillus fumigatus
Af293]
gi|129556817|gb|EAL87604.2| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus Af293]
gi|159129049|gb|EDP54163.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus A1163]
Length = 120
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ +V +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|125540070|gb|EAY86465.1| hypothetical protein OsI_07847 [Oryza sativa Indica Group]
Length = 114
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ D R +A+
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETLLVEDTPRVKAK 90
>gi|119480211|ref|XP_001260134.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
gi|119408288|gb|EAW18237.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
Length = 121
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ +V +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYYIL-PDSLPLDTL 79
>gi|196003304|ref|XP_002111519.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
gi|190585418|gb|EDV25486.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
Length = 130
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ VD +N L++ ++ +++ P +++ IRG+ +RY LP
Sbjct: 15 VTIELKNGTVVHGTVWGVDMSMNTHLKSVKMTVKNREP--VTLDTLAIRGNNIRYFILPD 72
Query: 75 D-GVDVDLLHDATRREAR 91
+ +D L+ D+ + +A+
Sbjct: 73 NLALDQLLVDDSPKMKAK 90
>gi|348677781|gb|EGZ17598.1| hypothetical protein PHYSODRAFT_499052 [Phytophthora sojae]
Length = 84
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L N + +G L +D ++NI +E T+ + +CFIRG+
Sbjct: 18 FLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYSNGQLKAQYG--DCFIRGN 75
Query: 66 VVRYV 70
V Y+
Sbjct: 76 NVLYI 80
>gi|259484712|tpe|CBF81168.1| TPA: U6 snRNA-associated Sm-like protein LSm6, putative
(AFU_orthologue; AFUA_6G06325) [Aspergillus nidulans
FGSC A4]
Length = 80
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE ++ + S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSQEFVSGQLTR--SYGDAFIRG 71
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 72 NNVLYI 77
>gi|148700925|gb|EDL32872.1| mCG50614 [Mus musculus]
Length = 104
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFIR 63
+ K ++GR V V+L + + RG L +D Y+NI LE T V Q K + R+ FIR
Sbjct: 11 FLKQIIGRPVVVKLNSGVGYRGVLVCLDGYMNIALEQTEEYVNGQLKNKY----RDAFIR 66
Query: 64 GSVVRYVQLPPDGVDV 79
G+ V Y+ DV
Sbjct: 67 GNNVLYISTQKRRADV 82
>gi|156030963|ref|XP_001584807.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980]
gi|154700653|gb|EDO00392.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 136
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN I GT+ SV +N L ++ ++ LS+
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNG--ASLSLDTI 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 59 NLRGSTIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|336372413|gb|EGO00752.1| hypothetical protein SERLA73DRAFT_121184 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385171|gb|EGO26318.1| hypothetical protein SERLADRAFT_367910 [Serpula lacrymans var.
lacrymans S7.9]
Length = 115
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L + D++ +R
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRF---WKLR 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRGS ++Y+++P D L DA + E
Sbjct: 58 ECYIRGSTIKYLRVP------DTLLDAVKDE 82
>gi|242207126|ref|XP_002469417.1| predicted protein [Postia placenta Mad-698-R]
gi|220731446|gb|EED85290.1| predicted protein [Postia placenta Mad-698-R]
Length = 106
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S + + VELKN G L + D ++NI L + D ++ C+
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADG-DRFWKLKECY 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRRE 89
IRGS ++Y+++P D L DA + E
Sbjct: 61 IRGSTIKYLRVP------DTLLDAVKEE 82
>gi|380090691|emb|CCC04861.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 82
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CF 61
+ +++G VTV+L + + +G L SVD Y+NI LE T ++Y + + R+ F
Sbjct: 16 GFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEYINGVKRRSYGDAF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>gi|358054612|dbj|GAA99538.1| hypothetical protein E5Q_06239 [Mixia osmundae IAM 14324]
Length = 160
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN ++ GT+ VD +N+ L+ ++ ++ P S+
Sbjct: 1 MQLTRFLMKLNNETVSIELKNGTSVGGTITGVDVAMNMHLKAVKMTVKNNEPQ--SLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RYV L PD + +D L
Sbjct: 59 SIRGNNIRYVIL-PDSLPLDTL 79
>gi|159486837|ref|XP_001701443.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
gi|158271625|gb|EDO97440.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
Length = 114
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L V +ELKN I+GT+ VD +N L+ ++ + K P +S+ + +RG+
Sbjct: 2 FLMKLANETVQIELKNGTVIQGTIAGVDIAMNTHLKAVKLTARGKNP--VSMDHLSVRGN 59
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD +++D L
Sbjct: 60 NIRYYIL-PDSLNLDTL 75
>gi|195473653|ref|XP_002089107.1| GE25987 [Drosophila yakuba]
gi|194175208|gb|EDW88819.1| GE25987 [Drosophila yakuba]
Length = 140
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L + D D++ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE---CYIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EVIDM 64
>gi|408398664|gb|EKJ77793.1| hypothetical protein FPSE_02027 [Fusarium pseudograminearum
CS3096]
Length = 82
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G VTV+L + + +G L SVD Y+NI LE T V Q + + + F+
Sbjct: 16 SFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTSEYVNGQKRREY----GDAFV 71
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 72 RGNNVMYIS 80
>gi|291243481|ref|XP_002741624.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 1 [Saccoglossus kowalevskii]
Length = 118
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN +RGT+ VD +N L+ ++ ++K P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTLVRGTITGVDVSMNTHLKAVKMTVRNKDP--VQIDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|301101082|ref|XP_002899630.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
gi|262103938|gb|EEY61990.1| U6 snRNA-associated Sm-like protein LSm6, putative [Phytophthora
infestans T30-4]
Length = 83
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L N + +G L +D ++NI +E T+ + +CFIRG+
Sbjct: 17 FLKGVLGRPVDVKLNNGVEYKGVLACLDGFMNIAMEQTQEYQNGQLKAQYG--DCFIRGN 74
Query: 66 VVRYV 70
V Y+
Sbjct: 75 NVLYI 79
>gi|149626991|ref|XP_001507555.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Ornithorhynchus anatinus]
Length = 125
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLS 56
M + L VT+ELKN + G + VD +N L+N ++V++ K P+ +
Sbjct: 1 MKLVRFLMKLANESVTIELKNGTVLTGIVLGVDISMNTHLKNVKIVNKTKAASKGPNFIL 60
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVD-LLHDATRRE 89
+ + IRG+ +RY L D + +D LL D T ++
Sbjct: 61 LDHLTIRGNSIRYFIL-SDSLPLDTLLIDDTPKQ 93
>gi|452980522|gb|EME80283.1| hypothetical protein MYCFIDRAFT_189882 [Pseudocercospora
fijiensis CIRAD86]
Length = 90
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE+++ K + + FIRG+
Sbjct: 22 FLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEDSKEFVDGKLRR--NYGDAFIRGN 79
Query: 66 VVRYVQ 71
V Y+
Sbjct: 80 NVMYIS 85
>gi|449269384|gb|EMC80160.1| Small nuclear ribonucleoprotein Sm D1, partial [Columba livia]
Length = 117
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + L VT+ELKN + GT+ VD +N L+ ++ +++ P + + I
Sbjct: 1 IFRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSI 58
Query: 63 RGSVVRYVQLPPDGVDVDLL 82
RG+ +RY L PD + +D L
Sbjct: 59 RGNNIRYFIL-PDSLPLDTL 77
>gi|167392342|ref|XP_001740112.1| small nuclear ribonucleoprotein sm D1 [Entamoeba dispar SAW760]
gi|165895904|gb|EDR23487.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba dispar
SAW760]
Length = 100
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
L VT+ELK+ + + GT+ VD Y+N+ L+ ++ + K P + + +RG+ +R
Sbjct: 3 LTNEVVTIELKSGMILTGTIVGVDNYMNVHLKVVKMTQKGKNP--IDLDQSTVRGNTIRN 60
Query: 70 VQLPPD-GVDVDLLHDATRREARGG 93
+ LP +D L+ D R + +
Sbjct: 61 IILPESLNLDTYLVDDTPRLKVKAA 85
>gi|19074364|ref|NP_585870.1| U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN
[Encephalitozoon cuniculi GB-M1]
gi|19069006|emb|CAD25474.1| U6-snRNA ASSOCIATED SMALL NUCLEAR RIBONUCLEOPROTEIN
[Encephalitozoon cuniculi GB-M1]
gi|449329505|gb|AGE95777.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon cuniculi]
Length = 71
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
S + +GR V V++ + RGT ++D YLNI LE+ + + P S + FI+G
Sbjct: 4 SVYAAFIGRTVKVKICDSSEFRGTSVAIDAYLNISLESASYLQDGQEPRYYS--SLFIKG 61
Query: 65 SVVRYVQL 72
S + ++ L
Sbjct: 62 SYIDHIAL 69
>gi|255932631|ref|XP_002557872.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582491|emb|CAP80678.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDPVSLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -VRGSTIRYYIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|171680313|ref|XP_001905102.1| hypothetical protein [Podospora anserina S mat+]
gi|170939783|emb|CAP65009.1| unnamed protein product [Podospora anserina S mat+]
Length = 82
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVDQDKYPHMLSVRNCFIR 63
+ +++G VTV+L + + +G L SVD Y+NI LE T V+ K S + F+R
Sbjct: 16 GWLSEIIGHPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAK---RRSYGDAFVR 72
Query: 64 GSVVRYV 70
G+ V Y+
Sbjct: 73 GNNVMYI 79
>gi|121710142|ref|XP_001272687.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
gi|119400837|gb|EAW11261.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
Length = 123
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + P L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIISVSPQMNTALRTVKMTPKGRDPISLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RGS +RY L PD + +D L
Sbjct: 60 -VRGSTIRYFIL-PDSLPLDTL 79
>gi|169617530|ref|XP_001802179.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
gi|111059239|gb|EAT80359.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
Length = 137
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N+ L + + + +++ +
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGSIVNGTITSVSPLMNVALRTVKYTPKSR--DTVTLDSM 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDA------TRREARGG 93
+RGS +RY+ L PD + +D L+ DA R+EA G
Sbjct: 59 TVRGSTIRYIIL-PDSLPLDTLLIDDAPKPKNKARKEADRG 98
>gi|297602887|ref|NP_001053049.2| Os04g0470200 [Oryza sativa Japonica Group]
gi|38344744|emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa Japonica Group]
gi|116310018|emb|CAH67043.1| OSIGBa0124N08.5 [Oryza sativa Indica Group]
gi|222629031|gb|EEE61163.1| hypothetical protein OsJ_15131 [Oryza sativa Japonica Group]
gi|255675540|dbj|BAF14963.2| Os04g0470200 [Oryza sativa Japonica Group]
Length = 114
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ D R +A+
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETLLVEDTPRVKAK 90
>gi|241959636|ref|XP_002422537.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223645882|emb|CAX40545.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 126
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + +TVELKN I GTL S + +N+ L+N ++ + P +L N I
Sbjct: 6 FLMNIPNSTTQPITVELKNGNIISGTLLSCNPPMNLNLKNVKLQQPLQDPILLQYIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVD--LLHDATRREARGG 93
RG+ VR + L PD ++++ L+ T+ + G
Sbjct: 64 RGNQVRQILL-PDELNIESVLVKSETKIKGNGA 95
>gi|189194007|ref|XP_001933342.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330928710|ref|XP_003302375.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
gi|187978906|gb|EDU45532.1| LSM domain containing protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311322339|gb|EFQ89540.1| hypothetical protein PTT_14152 [Pyrenophora teres f. teres 0-1]
Length = 89
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE + V + + F+RG+
Sbjct: 22 FLSEIIGAPVTVKLNSGIIYKGDLQSVDGYMNIALERCKEVADGRVTRNWG--DAFVRGN 79
Query: 66 VVRYV 70
V Y+
Sbjct: 80 NVTYI 84
>gi|391339536|ref|XP_003744104.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ--DKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L + DK+ +
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSREGDKF---WRIP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRG+ +R++++P + +++
Sbjct: 58 ECYIRGNTIRFLRIPDEVIEM 78
>gi|242212742|ref|XP_002472203.1| predicted protein [Postia placenta Mad-698-R]
gi|220728761|gb|EED82649.1| predicted protein [Postia placenta Mad-698-R]
Length = 96
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S + + VELKN G L + D ++NI L + D ++ C+
Sbjct: 2 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADG-DRFWKLKECY 60
Query: 62 IRGSVVRYVQLPPDGVDVDLLHDATRRE 89
IRGS ++Y+++P D L DA + E
Sbjct: 61 IRGSTIKYLRVP------DTLLDAVKEE 82
>gi|412985751|emb|CCO16951.1| predicted protein [Bathycoccus prasinos]
Length = 158
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L VT+ELKN GT+ VD +N L++ ++ + + P L +
Sbjct: 37 MKLVKFLQKLNNETVTIELKNGTTCSGTILGVDISMNTHLKSVKLTVKGRNPQTLD--HL 94
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L P+ +++D L
Sbjct: 95 SIRGNTIRYYIL-PESLNLDAL 115
>gi|189028863|sp|Q2HAN0.2|LSM6_CHAGB RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 82
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CF 61
+ +++G VTV+L + + +G L SVD Y+NI LE T ++Y + R+ F
Sbjct: 16 GFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEYVNGAKRRSYGDAF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>gi|440492342|gb|ELQ74917.1| Small nuclear ribonucleoprotein SMD1 [Trachipleistophora hominis]
Length = 88
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + + L + +T+E K I+GTL +D+ +NI L N + H V +
Sbjct: 1 MQIIQFLRTLKTKRLTIETKEKTIIKGTLTKIDKKMNIYLTNATI-------HNEPVDSY 53
Query: 61 FIRGSVVRYV 70
FIRG+ VRYV
Sbjct: 54 FIRGTQVRYV 63
>gi|346322201|gb|EGX91800.1| U6 snRNA-associated Sm-like protein LSm6, putative [Cordyceps
militaris CM01]
Length = 81
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRV----VDQDKYPHMLSVRNC 60
S+ D++G V V+L + + +G L SVD Y+NI LE T+ V + +Y +
Sbjct: 14 SFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQEFVNGVKRKEYG------DA 67
Query: 61 FIRGSVVRYVQ 71
F+RG+ V Y+
Sbjct: 68 FVRGNNVMYIS 78
>gi|189028860|sp|Q4WNI0.2|LSM6_ASPFU RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE + K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKR--SYGDAFIRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|390599258|gb|EIN08655.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 144
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 3 FFS---YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN 59
FF+ + L VT+ELKN + GT+ VD +N L+ ++ +++ P +S+
Sbjct: 24 FFAPDRFLMKLNNESVTIELKNGSVVHGTITGVDMQMNTHLKTVKMSMRNREP--VSLDT 81
Query: 60 CFIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 82 LSIRGNNIRYFVL-PDALPLDTL 103
>gi|47028291|gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiella natans]
Length = 120
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN ++GT+ VD +N L+ ++ + K P + +
Sbjct: 1 MKLVKFLMRLNNETVTVELKNGTVVQGTISGVDMSMNTHLKIVKMTLKGKNP--VHLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD +++D L
Sbjct: 59 SIRGNNIRYFIL-PDSLNLDAL 79
>gi|429859869|gb|ELA34627.1| small nuclear ribonucleoprotein sm d1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 177
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + L N
Sbjct: 56 MKLVRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMN- 114
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 115 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 146
>gi|358391711|gb|EHK41115.1| hypothetical protein TRIATDRAFT_206714 [Trichoderma atroviride
IMI 206040]
Length = 83
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
S+ D++G V V+L + + +G L SVD Y+NI LE T V+ + F+RG
Sbjct: 16 SFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKT--VEYVNGAKRREYGDTFVRG 73
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 74 NNVMYIS 80
>gi|407917344|gb|EKG10658.1| hypothetical protein MPH_12237 [Macrophomina phaseolina MS6]
Length = 122
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ +++ L N
Sbjct: 1 MKLVRFLMKCQNETVTIELKNGTVVNGTIASVSPTMNTALRTVKMTPKNRETMTLDTIN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSNIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|195435704|ref|XP_002065819.1| GK18761 [Drosophila willistoni]
gi|194161904|gb|EDW76805.1| GK18761 [Drosophila willistoni]
Length = 124
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L++ R+ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIRNRDP--VHLESL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ VRY LP
Sbjct: 59 SIRGNNVRYFILP 71
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML + GR + VELKN G L + D Y+N+ L + D DK+ +
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKF---FRLP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRG+ ++Y+++ + + A +RE
Sbjct: 58 ECYIRGNNIKYLRIQDEVLSQVAKQQAQQRE 88
>gi|198464926|ref|XP_001353417.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
gi|198149939|gb|EAL30924.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
Length = 125
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L++ R+ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDP--VHLESL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|452004429|gb|EMD96885.1| hypothetical protein COCHEDRAFT_1163040 [Cochliobolus
heterostrophus C5]
Length = 130
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N+ L + + + +++
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSR--DTVALDTM 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY+ L PD + +D L+ DA + + +
Sbjct: 59 TVRGSTIRYIIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|451855386|gb|EMD68678.1| hypothetical protein COCSADRAFT_157089 [Cochliobolus sativus
ND90Pr]
Length = 131
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N+ L + + + +++
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSR--DTVALDTM 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY+ L PD + +D L+ DA + + +
Sbjct: 59 TVRGSTIRYIIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|328854944|gb|EGG04073.1| hypothetical protein MELLADRAFT_72433 [Melampsora larici-populina
98AG31]
Length = 93
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHML---SVRNCFI 62
+ K +VG EV V L + + RG L +D Y+NI LENT ++Y + + S + F+
Sbjct: 27 FLKQVVGHEVVVRLNSGVDYRGILSCLDGYMNIALENT-----EEYVNGIKRNSYGDAFV 81
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 82 RGNNVLYIS 90
>gi|224082029|ref|XP_002198421.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TVEL+++ A G + SVD ++N++L D+ L F+ G
Sbjct: 21 LQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRRGAVSQLD--ELFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
+RYV + PD VD+
Sbjct: 79 IRYVHI-PDEVDI 90
>gi|403157835|ref|XP_003307220.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163571|gb|EFP74214.2| small nuclear ribonucleoprotein [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 96
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHML---SVRNCFI 62
+ K +VG +VTV L + + RG L +D Y+NI LENT ++Y + + S + F+
Sbjct: 30 FLKQVVGHQVTVRLNSGVDYRGILSCLDGYMNIALENT-----EEYVNGIKRNSYGDAFL 84
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 85 RGNNVLYIS 93
>gi|448085360|ref|XP_004195840.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359377262|emb|CCE85645.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 126
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + + VELKN + G L + D ++N+ L N V + + L + C
Sbjct: 1 MLPLYLLTSAKNQPILVELKNGETLNGELVNCDSWMNLTLNNVIQVSANG-TNFLKLPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
++RG+ ++Y++LP + +D
Sbjct: 60 YVRGNHIKYMRLPEELMD 77
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---P 57
Query: 59 NCFIRGSVVRYVQLP 73
C+IRG+ ++Y+++P
Sbjct: 58 ECYIRGNTIKYLRVP 72
>gi|299750975|ref|XP_001829959.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
gi|298409160|gb|EAU91881.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
Length = 129
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L + D++ ++
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRGS ++Y+++P D L DA + E
Sbjct: 58 ECYIRGSTIKYLRVP------DQLLDAVKEE 82
>gi|322698480|gb|EFY90250.1| U6 snRNA-associated protein LSm6 [Metarhizium acridum CQMa 102]
Length = 86
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
S+ D++G V V+L + + +G L SVD Y+NI LE T K + F+RG
Sbjct: 19 SFLSDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGK--KRRDYGDAFVRG 76
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 77 NNVMYIS 83
>gi|124804217|ref|XP_001347937.1| small nuclear ribonucleoprotein D1, putative [Plasmodium
falciparum 3D7]
gi|23496190|gb|AAN35850.1|AE014839_59 small nuclear ribonucleoprotein D1, putative [Plasmodium
falciparum 3D7]
Length = 126
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M + L VT+ELKN I G + +VD +N ++N +VV ++K
Sbjct: 1 MKLVHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVDLLHDATRRE 89
LS+ + IRG+ +RY LP D + L+ D T ++
Sbjct: 61 QFLSLEHVTIRGNNIRYFILSDSLPLDSL---LVEDTTPKK 98
>gi|366989241|ref|XP_003674388.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS
4309]
gi|342300251|emb|CCC68009.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS
4309]
Length = 182
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT---RVVDQDKYPHMLSV 57
ML + G+++ VELKN + G L +VD ++N+ L N + D P V
Sbjct: 1 MLPLYLLTNAKGQQMRVELKNGEIVEGKLTNVDNWMNLTLSNVSEYKSSDTIATPQTEVV 60
Query: 58 RNC--FIRGSVVRYVQLPPDGVDV 79
++ ++RG+ ++Y+ L D +D+
Sbjct: 61 KSTEIYVRGTFIKYINLQDDIIDI 84
>gi|330943683|ref|XP_003306243.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
gi|311316316|gb|EFQ85673.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
Length = 132
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N+ L + + + +++
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSR--DTVALDTM 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY+ L PD + +D L+ DA + + +
Sbjct: 59 TVRGSTIRYIIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|189200737|ref|XP_001936705.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983804|gb|EDU49292.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 132
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N+ L + + + +++
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSR--DTVALDTM 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY+ L PD + +D L+ DA + + +
Sbjct: 59 TVRGSTIRYIIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|156036426|ref|XP_001586324.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980]
gi|154698307|gb|EDN98045.1| hypothetical protein SS1G_12902 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 95
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ D++G V V+L N L +G L SVD Y+NI LE V + K H + F+
Sbjct: 16 SFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 63 RGS 65
RG+
Sbjct: 72 RGN 74
>gi|444323153|ref|XP_004182217.1| hypothetical protein TBLA_0I00350 [Tetrapisispora blattae CBS
6284]
gi|387515264|emb|CCH62698.1| hypothetical protein TBLA_0I00350 [Tetrapisispora blattae CBS
6284]
Length = 196
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY---PHMLSV 57
ML ++ G+++T+ELKN + G L +VD ++N+ L N + + P + V
Sbjct: 1 MLPLYLLTNVKGQKMTIELKNGEVVEGELTNVDNWMNLTLTNVSQHNGSDFISGPQVEVV 60
Query: 58 RN--CFIRGSVVRYVQLPPDGVD 78
++ ++RG+ ++Y+ L D +D
Sbjct: 61 KSKEIYLRGTYIKYISLQKDIID 83
>gi|226372462|gb|ACO51856.1| U6 snRNA-associated Sm-like protein LSm6 [Rana catesbeiana]
Length = 80
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
++K ++GR V VEL + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FWKQIIGRPVVVELNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ--DKYPHMLSVR 58
+L + + G + VELKN G L + D ++N+ + N + DK+ +
Sbjct: 2 VLPLTLLRTAQGHPMLVELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKF---WKIN 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARG 92
CF+RG+ ++ V+L PD V +L + +RRE G
Sbjct: 59 ECFVRGNNLKSVRL-PDQV-ANLAEEESRREQLG 90
>gi|390981143|pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
gi|390981144|pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
gi|390981145|pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
gi|390981146|pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
gi|390981147|pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
gi|390981148|pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
gi|390981149|pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
gi|390981150|pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
gi|390981151|pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
gi|390981152|pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
gi|390981153|pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
gi|390981154|pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
gi|390981155|pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
gi|390981156|pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
gi|390981157|pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
gi|390981158|pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
gi|390981159|pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
gi|390981160|pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
gi|390981161|pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
gi|390981162|pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
gi|390981163|pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
gi|390981164|pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
gi|390981165|pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
gi|390981166|pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
Length = 105
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVRNCFIRGSVVRY 69
GR + VELKN G L + D Y N+ L D DK+ + C+IRG+ ++Y
Sbjct: 26 GRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKF---FRLPECYIRGNNIKY 82
Query: 70 VQLPPDGVDVDLLHDATRREARG 92
+++ + + A +RE RG
Sbjct: 83 LRIQDEVLSQVAKQQAQQRENRG 105
>gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus
anophagefferens]
Length = 114
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN ++GT+ VD +N L+N + + K + +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGK--NGVKYDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRRE 89
+RGS VRY L PD +++D LL D T ++
Sbjct: 59 SVRGSNVRYYIL-PDSLNLDTLLIDDTPKQ 87
>gi|255073675|ref|XP_002500512.1| predicted protein [Micromonas sp. RCC299]
gi|226515775|gb|ACO61770.1| predicted protein [Micromonas sp. RCC299]
Length = 159
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNC 60
+ + LVG V +E ++D+ RGTL VD+ +N LE + V+Q
Sbjct: 30 LLCFVQALVGHLVVIETRDDVTTRGTLVEVDERMNCTLEGAQRVTVEQALEKKNSKFDRM 89
Query: 61 FIRGSVVRYVQLP 73
F+R ++RYV +P
Sbjct: 90 FVRARLIRYVHVP 102
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 42.0 bits (97), Expect = 0.046, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRN 59
L S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 3656 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRM---PE 3712
Query: 60 CFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 3713 CYIRGNTIKYLRVPDEVID 3731
>gi|380495060|emb|CCF32683.1| small nuclear ribonucleoprotein Sm D1 [Colletotrichum
higginsianum]
Length = 124
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|310793785|gb|EFQ29246.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 124
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV +N L ++ + + L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|194761808|ref|XP_001963115.1| GF14101 [Drosophila ananassae]
gi|190616812|gb|EDV32336.1| GF14101 [Drosophila ananassae]
Length = 140
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L S D ++NI L + D D++ M C+IRGS ++Y+++P
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPE---CYIRGSTIKYLRIPD 59
Query: 75 DGVDV 79
+ +D+
Sbjct: 60 EVIDM 64
>gi|391332718|ref|XP_003740777.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Metaseiulus occidentalis]
Length = 79
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K LVGR V V+L + L RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKQLVGRPVVVKLNSGLDYRGVLSCLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYVQ 71
V Y+
Sbjct: 68 NVLYIS 73
>gi|268531626|ref|XP_002630940.1| C. briggsae CBR-SNR-3 protein [Caenorhabditis briggsae]
Length = 127
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L + ++K P + +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKDP--VKLDTL 58
Query: 61 FIRGSVVRYVQLP-PDGVDVDLLHDATRRE 89
IRG+ +RY+ LP P +D L+ D R++
Sbjct: 59 SIRGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|164657680|ref|XP_001729966.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
gi|159103860|gb|EDP42752.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
Length = 120
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L+ ++ + P +S+
Sbjct: 1 MKLVRFLMKLNNESVTIELKNGTVIHGTVTGVDVQMNTHLKAVKMTVRGGEP--ISLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ RY L PD + +D L+ DA R + +
Sbjct: 59 SIRGNNTRYWIL-PDALPLDTLLVDDAPRPKGK 90
>gi|1401208|gb|AAD05369.1| small nucleolar ribonucleoprotein E homolog [Bigelowiella natans]
Length = 71
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
K + E+ ++LKN L ++GTL DQ+LNI LE + + Y +L VR
Sbjct: 10 LKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSYSKESNYFDILIVR 61
>gi|315045632|ref|XP_003172191.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|327304531|ref|XP_003236957.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|311342577|gb|EFR01780.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|326459955|gb|EGD85408.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton rubrum CBS
118892]
gi|326472909|gb|EGD96918.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton tonsurans
CBS 112818]
Length = 80
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ ++ G VTV+L + + +G L SVD Y+NI LE T K S + F+RG
Sbjct: 14 AFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRR--SYGDAFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|161899457|ref|XP_001712962.1| mRNA splicing factor snRNPG [Bigelowiella natans]
gi|75756457|gb|ABA27350.1| mRNA splicing factor snRNPG [Bigelowiella natans]
Length = 71
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR 58
K + E+ ++LKN L ++GTL DQ+LNI LE + + Y +L VR
Sbjct: 10 LKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKSSYSKESNYFDILIVR 61
>gi|17864386|ref|NP_524774.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|194747611|ref|XP_001956245.1| GF25112 [Drosophila ananassae]
gi|195327205|ref|XP_002030312.1| GM24635 [Drosophila sechellia]
gi|195493908|ref|XP_002094615.1| GE20102 [Drosophila yakuba]
gi|195589894|ref|XP_002084684.1| GD12704 [Drosophila simulans]
gi|33112453|sp|Q9VU02.1|SMD1_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|7294552|gb|AAF49893.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|189181777|gb|ACD81665.1| FI02845p [Drosophila melanogaster]
gi|190623527|gb|EDV39051.1| GF25112 [Drosophila ananassae]
gi|194119255|gb|EDW41298.1| GM24635 [Drosophila sechellia]
gi|194180716|gb|EDW94327.1| GE20102 [Drosophila yakuba]
gi|194196693|gb|EDX10269.1| GD12704 [Drosophila simulans]
Length = 124
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L++ R+ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDP--VHLETL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|194870009|ref|XP_001972567.1| GG13810 [Drosophila erecta]
gi|190654350|gb|EDV51593.1| GG13810 [Drosophila erecta]
Length = 124
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L++ R+ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDP--VHLETL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|126459670|ref|YP_001055948.1| like-Sm ribonucleoprotein, core [Pyrobaculum calidifontis JCM
11548]
gi|126249391|gb|ABO08482.1| Like-Sm ribonucleoprotein, core [Pyrobaculum calidifontis JCM
11548]
Length = 144
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY 51
F + L+GREV V L N +G LH+VD LNI L N D+Y
Sbjct: 12 FVAELNSLIGREVQVVLSNGEVYKGVLHAVDSQLNILLANATAKSGDRY 60
>gi|403221309|dbj|BAM39442.1| small ribonucleoprotein D1 [Theileria orientalis strain Shintoku]
Length = 125
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK----YPHMLS 56
M + L VTVELKN + GT+ +D +N L+N +VV+++ P+++
Sbjct: 1 MKLVRFLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKNSDGKDGPNVVL 60
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVDLL 82
+ + +RG+ +RY L D + +D L
Sbjct: 61 LDHLTVRGNNIRYFIL-SDSIPLDTL 85
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S K G + VELKN G L + D ++NI L +D + C+
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG-DRFWRMPECY 60
Query: 62 IRGSVVRYVQLPPDGVD 78
IRG+ ++Y+++P + +D
Sbjct: 61 IRGNTIKYLRVPDEVID 77
>gi|326477395|gb|EGE01405.1| U6 snRNA-associated Sm-like protein LSm6 [Trichophyton equinum
CBS 127.97]
Length = 80
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ ++ G VTV+L + + +G L SVD Y+NI LE T K S + F+RG
Sbjct: 14 AFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRR--SYGDAFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|115446977|ref|NP_001047268.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|46806276|dbj|BAD17484.1| putative small nuclear ribonucleoprotein D1 polypeptide 16kDa;
snRNP core protein D1; Sm-D autoantigen [Oryza sativa
Japonica Group]
gi|113536799|dbj|BAF09182.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|125582674|gb|EAZ23605.1| hypothetical protein OsJ_07305 [Oryza sativa Japonica Group]
Length = 114
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P ++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNP--VTFDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ D R +A+
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETLLVEDTPRVKAK 90
>gi|400603112|gb|EJP70710.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 81
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR---NCF 61
S+ D++G V V+L + + +G L SVD Y+NI LE T+ ++ + + R + F
Sbjct: 14 SFLGDIIGNPVIVKLNSGVVYKGELQSVDGYMNIALEKTQ-----EFVNGVKRREYGDAF 68
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 69 VRGNNVMYIS 78
>gi|296805353|ref|XP_002843501.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238844803|gb|EEQ34465.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 80
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ ++ G VTV+L + + +G L SVD Y+NI LE T K S + F+RG
Sbjct: 14 AFLGEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGKMRR--SYGDAFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|432882999|ref|XP_004074183.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oryzias latipes]
gi|432883001|ref|XP_004074184.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oryzias latipes]
Length = 134
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+++ + RG + +VD ++NI+L++ V+ D+ +++ FI G
Sbjct: 33 LQGLQGEVTTVDLRDESSARGLVLNVDAFMNIRLKD--VLFLDRRGQTAQLQDLFITGRN 90
Query: 67 VRYVQLPPDGVDV 79
VRYV + PD VD+
Sbjct: 91 VRYVHI-PDHVDI 102
>gi|70949535|ref|XP_744168.1| small nuclear ribonucleoprotein D1 [Plasmodium chabaudi chabaudi]
gi|56524010|emb|CAH81021.1| small nuclear ribonucleoprotein D1, putative [Plasmodium chabaudi
chabaudi]
Length = 123
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M ++ L VT+ELKN I G + VD +N ++N +VV ++K
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVD 80
LS+ + IRG+ +RY LP D + VD
Sbjct: 61 QFLSLDHVTIRGNNIRYYILSDSLPLDTLLVD 92
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S + + VELKN G L S D ++NI L D DK+ +
Sbjct: 2 VLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSRDGDKF---WKIP 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C++RGS ++Y+++P + +D+
Sbjct: 59 ECYVRGSNIKYLRIPDEVIDM 79
>gi|405955862|gb|EKC22801.1| U7 snRNA-associated Sm-like protein LSm10 [Crassostrea gigas]
Length = 148
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
S K + G TVEL+N+ A+ G + +VD ++NI +E+ H S + F+
Sbjct: 14 LISLLKAVEGMVTTVELRNENAVTGLIQNVDPFMNIVMEDVVFKSYRGISHNFS--SFFV 71
Query: 63 RGSVVRYVQLPPDGVDV 79
+G +RYV + PD +D+
Sbjct: 72 QGMNIRYVHI-PDEIDM 87
>gi|291394184|ref|XP_002713641.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 236
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 118 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 176
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 177 -IRGNNIRYFIL-PDSLPLDTL 196
>gi|339244427|ref|XP_003378139.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316972974|gb|EFV56616.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 373
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K L+G+ V V+L + L RG L +D YLN+ LE T + + FIRG+
Sbjct: 304 FLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYG--DAFIRGN 361
Query: 66 VVRYV 70
V Y+
Sbjct: 362 NVLYI 366
>gi|302681117|ref|XP_003030240.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
gi|300103931|gb|EFI95337.1| hypothetical protein SCHCODRAFT_57519 [Schizophyllum commune
H4-8]
Length = 129
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+ + VELKN G L + D ++NI L D DK+ ++ C+IRGS ++Y+
Sbjct: 13 KPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNADGDKF---WKLKECYIRGSTIKYL 69
Query: 71 QLPPDGVD 78
++P + +D
Sbjct: 70 RIPDELLD 77
>gi|154278836|ref|XP_001540231.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|189028837|sp|A6R363.1|LSM6_AJECN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|150412174|gb|EDN07561.1| hypothetical protein HCAG_04071 [Ajellomyces capsulatus NAm1]
gi|225554344|gb|EEH02643.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 80
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ ++ G VTV+L + + +G L SVD Y+NI LE T K S + F+RG
Sbjct: 14 AFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRR--SYGDAFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|68063885|ref|XP_673938.1| small nuclear ribonucleoprotein D1 [Plasmodium berghei strain
ANKA]
gi|56492149|emb|CAH95780.1| small nuclear ribonucleoprotein D1, putative [Plasmodium berghei]
Length = 123
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M ++ L VT+ELKN I G + VD +N ++N +VV ++K
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVD 80
LS+ + IRG+ +RY LP D + VD
Sbjct: 61 QFLSLDHVTIRGNNIRYYILSDSLPLDTLLVD 92
>gi|449018375|dbj|BAM81777.1| U6 snRNA-associated Sm-like protein LSm6 [Cyanidioschyzon merolae
strain 10D]
Length = 99
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ + ++GR V V+L N RGTL +D YLNI LEN+ + + +RGS
Sbjct: 32 FLRKVLGRPVVVKLNNGTEYRGTLVCLDGYLNIVLENSAEFLNGELKRRYG--DTLLRGS 89
Query: 66 VVRYVQLPPD 75
V YV PD
Sbjct: 90 NVLYVGTIPD 99
>gi|27545253|ref|NP_775359.1| small nuclear ribonucleoprotein Sm D1 [Danio rerio]
gi|21105451|gb|AAM34669.1|AF506225_1 small nuclear ribonucleoprotein D1 [Danio rerio]
gi|47938075|gb|AAH71543.1| Snrpd1 protein [Danio rerio]
Length = 119
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQL--ESL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|328862497|gb|EGG11598.1| hypothetical protein MELLADRAFT_31042 [Melampsora larici-populina
98AG31]
Length = 108
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G+ + VELKN G L D ++N+ + + D + C+IRG+ ++Y++
Sbjct: 11 GKPMLVELKNGETFNGHLIQSDNFMNLTMREVYLTSSDG-EKFWKLSECYIRGNTIKYIR 69
Query: 72 LPPDGVD-VDLLHDATR---REARGG 93
+ + +D V D+ R R ARGG
Sbjct: 70 VTDNVIDIVKQQEDSYRQQNRSARGG 95
>gi|56757161|gb|AAW26752.1| SJCHGC06377 protein [Schistosoma japonicum]
gi|226490214|emb|CAX69349.1| putative U6 snRNA-associated Sm-like protein LSm4 [Schistosoma
japonicum]
Length = 128
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDG 76
VELK+ G L + D ++NI L+ +D + C+IRGS+++Y+++P D
Sbjct: 3 VELKSGETYNGHLVACDDWMNIHLKEVICTSRDG-DRFWKMPECYIRGSIIKYLRIPDDV 61
Query: 77 VD 78
+D
Sbjct: 62 ID 63
>gi|83315254|ref|XP_730713.1| small nuclear riboprotein Sm-D1 [Plasmodium yoelii yoelii 17XNL]
gi|23490523|gb|EAA22278.1| small nuclear riboprotein Sm-D1-like protein [Plasmodium yoelii
yoelii]
Length = 123
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M ++ L VT+ELKN I G + VD +N ++N +VV ++K
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVD 80
LS+ + IRG+ +RY LP D + VD
Sbjct: 61 QFLSLDHVTIRGNNIRYYILSDSLPLDTLLVD 92
>gi|348513171|ref|XP_003444116.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Oreochromis niloticus]
gi|432883312|ref|XP_004074261.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Oryzias
latipes]
Length = 119
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQL--ESL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|345567352|gb|EGX50284.1| hypothetical protein AOL_s00076g48 [Arthrobotrys oligospora ATCC
24927]
Length = 86
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
S+ ++ G +TV+L + + +G L SVD Y+NI LENT + + + FIRG
Sbjct: 19 SFLSEIHGAPITVKLNSGVEYKGELQSVDGYMNIALENTEEYVNGERKNRYG--DVFIRG 76
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 77 NNVLYIS 83
>gi|169606003|ref|XP_001796422.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
gi|111065978|gb|EAT87098.1| hypothetical protein SNOG_06034 [Phaeosphaeria nodorum SN15]
Length = 187
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVRNCF 61
+ G + VELK+ + G L + D ++N+ L D DK+ + + +
Sbjct: 64 YGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKF---MRLPEIY 120
Query: 62 IRGSVVRYVQLPPDGVDV---DLLHDATRREARGG 93
+RGS ++Y+++P + VDV + D R RGG
Sbjct: 121 VRGSTIKYLRVPDEIVDVVKDQQVKDQANRGGRGG 155
>gi|390362890|ref|XP_003730251.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 151
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S + + VELKN G L + D ++NI L D D++ M
Sbjct: 28 VLPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRM---P 84
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 85 ECYIRGSTIKYLRIPDEVIDM 105
>gi|156377251|ref|XP_001630770.1| predicted protein [Nematostella vectensis]
gi|156217797|gb|EDO38707.1| predicted protein [Nematostella vectensis]
Length = 114
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV----DQDKYPHMLSVRNCFI 62
K + G TVEL+N+ + G + VD ++NIK+++ + V + D P M F+
Sbjct: 17 IKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVDNLPAM------FV 70
Query: 63 RGSVVRYVQLPPD 75
G+ +RYV +P +
Sbjct: 71 VGTQIRYVHIPDE 83
>gi|405973300|gb|EKC38022.1| Small nuclear ribonucleoprotein Sm D1 [Crassostrea gigas]
Length = 688
Score = 41.6 bits (96), Expect = 0.064, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN + GT+ VD +N L+ ++ ++K P + V IRG+
Sbjct: 573 FLMKLSHETVTIELKNGTQVHGTVTGVDVCMNTHLKAVKMTIKNKDP--VQVDTLSIRGN 630
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD + +D L
Sbjct: 631 NIRYYIL-PDSLPLDTL 646
>gi|344303431|gb|EGW33680.1| hypothetical protein SPAPADRAFT_59049 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + + +TVELKN I GTL S +N+ L+N ++ + +L N I
Sbjct: 6 FLMNIPNSTNQPLTVELKNGTTINGTLMSCSPSMNLSLKNVKLQQPLQDATLLQFIN--I 63
Query: 63 RGSVVRYVQLPPDGVDVD--LLHDATRREARGG 93
RG+ +R + L PD +++D L T+ + +G
Sbjct: 64 RGNQIRQILL-PDELNIDSILAKSVTKIKKQGA 95
>gi|119184466|ref|XP_001243137.1| hypothetical protein CIMG_07033 [Coccidioides immitis RS]
gi|303320391|ref|XP_003070195.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|121931667|sp|Q1DRN0.1|LSM6_COCIM RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|240109881|gb|EER28050.1| U6 snRNA-associated Sm-like protein LSm6, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320041261|gb|EFW23194.1| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides posadasii
str. Silveira]
gi|392866021|gb|EAS31886.2| U6 snRNA-associated Sm-like protein LSm6 [Coccidioides immitis
RS]
Length = 80
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ + G VTV+L + + +G L S+D Y+NI LE T+ K S + F+RG
Sbjct: 14 AFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRK--SYGDVFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|378731678|gb|EHY58137.1| small nuclear ribonucleoprotein D1 [Exophiala dermatitidis
NIH/UT8656]
Length = 130
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYP-----HMLS 56
+ + + VT+ELKN + GT+ SV +N L ++ +++ +S
Sbjct: 1 MSYRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRAVKMTTKNRSSPSAPGETIS 60
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVDLL 82
+ IRGS +RY L PD + +D L
Sbjct: 61 LDTINIRGSTIRYFIL-PDSLPLDTL 85
>gi|402902787|ref|XP_003914277.1| PREDICTED: uncharacterized protein LOC101001281 [Papio anubis]
Length = 266
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 109 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 167
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 168 -IRGNNIRYFIL-PDSLPLDTL 187
>gi|52345462|ref|NP_001004780.1| small nuclear ribonucleoprotein Sm D1 [Xenopus (Silurana)
tropicalis]
gi|148227202|ref|NP_001085322.1| small nuclear ribonucleoprotein Sm D1 [Xenopus laevis]
gi|49250837|gb|AAH74514.1| MGC69276 protein [Xenopus (Silurana) tropicalis]
gi|49255946|gb|AAH71069.1| MGC78968 protein [Xenopus laevis]
gi|76779906|gb|AAI06262.1| MGC78968 protein [Xenopus laevis]
gi|118835457|gb|AAI28954.1| MGC78968 protein [Xenopus laevis]
Length = 119
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|396081585|gb|AFN83201.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon romaleae SJ-2008]
Length = 71
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ +GR V V++ + RGT +VD YLNI LE+ + + P S + FI+GS
Sbjct: 6 YTAFIGRVVKVKICDSSEFRGTSVAVDAYLNISLESVSYIQSGQEPRHYS--SLFIKGSY 63
Query: 67 VRYVQL 72
+ ++ L
Sbjct: 64 IDHIAL 69
>gi|342889202|gb|EGU88369.1| hypothetical protein FOXB_01168 [Fusarium oxysporum Fo5176]
Length = 77
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT 43
S+ D++G VTV+L + + +G L SVD Y+NI LE T
Sbjct: 16 SFLSDIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT 54
>gi|336274282|ref|XP_003351895.1| hypothetical protein SMAC_00442 [Sordaria macrospora k-hell]
gi|380096178|emb|CCC06225.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 123
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV ++ L N ++ + + L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTL 79
>gi|443711594|gb|ELU05300.1| hypothetical protein CAPTEDRAFT_181174 [Capitella teleta]
Length = 144
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ VGR T+EL+ND +I GT+ VD +N+ L +T + K + ++
Sbjct: 16 LLCLLQGCVGRCTTIELRNDDSILGTIDHVDIQMNVFL-STITFTRAKTGQQSQLDKLYV 74
Query: 63 RGSVVRYVQLPPD 75
+G +RYV +P D
Sbjct: 75 QGKNIRYVHIPDD 87
>gi|355721054|gb|AES07137.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Mustela
putorius furo]
Length = 139
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 21 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 78
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 79 SIRGNNIRYFIL-PDSLPLDTL 99
>gi|344301854|gb|EGW32159.1| hypothetical protein SPAPADRAFT_61242 [Spathaspora passalidarum
NRRL Y-27907]
Length = 117
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 6 YFKDLVGREVTVELK-NDLAIRGTLHSVDQYLNIKLENT-----RVVDQDKYPHMLSVRN 59
+ K L+G++V V LK N RGTL S+D Y+N++L+ T V D ++ S+
Sbjct: 12 FLKSLIGKQVIVRLKWNKTEYRGTLISIDNYMNLQLDQTYEIIYEVEDGNETKKEESIGE 71
Query: 60 CFIRGSVVRYV 70
FIR + V +V
Sbjct: 72 IFIRCNNVLFV 82
>gi|358057300|dbj|GAA96649.1| hypothetical protein E5Q_03320 [Mixia osmundae IAM 14324]
Length = 114
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +D VG+ V V LK + RG L S+D Y+N++L NT D+ S+ FIR +
Sbjct: 11 FLQDRVGKPVQVRLKWGMEYRGYLVSIDNYMNLQLANTEEYQNDQ--PAGSLGEVFIRCN 68
Query: 66 VVRYVQLPPDGV----DVDLLHDATRREARGG 93
V Y+ P + L RR R G
Sbjct: 69 NVLYMYETPRASTSENSLTSLQTGNRRVERPG 100
>gi|71018117|ref|XP_759289.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
gi|46099139|gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
Length = 192
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + + +++
Sbjct: 68 MKLVRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGR--PAVTLDTL 125
Query: 61 FIRGSVVRYVQLPPDGVDVDLL------------HDATRREARGG 93
IRG+ +RY L PD + +D+L D R ARGG
Sbjct: 126 SIRGNNIRYWIL-PDALPLDMLLVDDAPKPKGKRKDPVARGARGG 169
>gi|388580904|gb|EIM21216.1| small nuclear ribonucleo protein SmF [Wallemia sebi CBS 633.66]
Length = 90
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ DL G+ V V LK L +G L SVD Y+N++L NT DK L FIR +
Sbjct: 11 FLNDLTGKAVQVRLKWGLDYKGYLVSVDNYMNLQLANTEEFQNDKSNGALG--EVFIRCN 68
Query: 66 VVRYVQLPPD 75
V +++ D
Sbjct: 69 NVLWLKQSDD 78
>gi|339244381|ref|XP_003378116.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
gi|316973000|gb|EFV56639.1| small nuclear ribonucleoprotein F [Trichinella spiralis]
Length = 327
Score = 41.2 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K L+G+ V V+L + L RG L +D YLN+ LE T + + FIRG+
Sbjct: 258 FLKQLIGKPVMVKLNSGLDYRGILACLDGYLNVALEQTEEYANGQLKQKYG--DAFIRGN 315
Query: 66 VVRYV 70
V Y+
Sbjct: 316 NVLYI 320
>gi|195126373|ref|XP_002007645.1| GI12268 [Drosophila mojavensis]
gi|193919254|gb|EDW18121.1| GI12268 [Drosophila mojavensis]
Length = 124
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN I GT+ VD +N L++ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDP--VHLESL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|302692404|ref|XP_003035881.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
gi|300109577|gb|EFJ00979.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
Length = 121
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTHLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD + +D L+ DA + + +
Sbjct: 59 SLRGNTIRYFIL-PDALPLDTLLVDDAPKPKGK 90
>gi|195019728|ref|XP_001985042.1| GH14721 [Drosophila grimshawi]
gi|193898524|gb|EDV97390.1| GH14721 [Drosophila grimshawi]
Length = 124
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN I GT+ VD +N L++ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDP--VHLESL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>gi|168034120|ref|XP_001769561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679103|gb|EDQ65554.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N +++ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHMKSVKLTLKGKVP--VALDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRR 88
IRG+ +RY L PD +++D LL D T R
Sbjct: 59 SIRGNNIRYYIL-PDSLNLDTLLVDDTPR 86
>gi|452978143|gb|EME77907.1| hypothetical protein MYCFIDRAFT_57424 [Pseudocercospora fijiensis
CIRAD86]
Length = 129
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELK ++GT+ SV +N L N ++ K +S+ +
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMT--PKGGSQISLDHI 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ DA + + +
Sbjct: 59 SVRGSEIRYYIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|340513813|gb|EGR44094.1| predicted protein [Trichoderma reesei QM6a]
Length = 120
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN GT+ SV +N+ L ++ + + L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIAHGTISSVTPQMNVALRTVKMTARGQDSIALDTMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTLLIDDAPKPKNKA 91
>gi|321461493|gb|EFX72525.1| hypothetical protein DAPPUDRAFT_59069 [Daphnia pulex]
Length = 79
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L N + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKQIIGRPVVVKLNNGVDYRGVLACLDGYMNIALEQTEEYSNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V ++
Sbjct: 68 NVLFI 72
>gi|85112250|ref|XP_964309.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
gi|28926086|gb|EAA35073.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
Length = 123
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELKN + GT+ SV ++ L N ++ + + L N
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 60 -IRGSTIRYFIL-PDSLPLDTL 79
>gi|389609361|dbj|BAM18292.1| small ribonucleoprotein particle protein SmD1 [Papilio xuthus]
Length = 125
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ +V ++K L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNK--EELQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATR-REARGG 93
IRG+ +RY L PD + ++ LL DA + R R G
Sbjct: 59 SIRGNNIRYYLL-PDSLPIETLLLDDAPKGRGKREG 93
>gi|449672414|ref|XP_002167952.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Hydra
magnipapillata]
Length = 128
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELKN G L + D ++NI L D D++ M C+IRGS ++Y+++P
Sbjct: 18 VELKNGETYNGHLVTCDNWMNINLREVICTSRDGDRFWRM---SQCYIRGSTIKYLRIPD 74
Query: 75 DGVDV 79
+ +D+
Sbjct: 75 EVIDM 79
>gi|156098711|ref|XP_001615371.1| small nuclear ribonucleoprotein Sm D1 [Plasmodium vivax Sal-1]
gi|148804245|gb|EDL45644.1| small nuclear ribonucleoprotein Sm D1, putative [Plasmodium
vivax]
Length = 127
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M ++ L VT+ELKN + G + VD +N ++N +VV ++K
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLVTGIITGVDIKMNTHMKNVKVVIKNKNVGEYNVNTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVD 80
LS+ + IRG+ +RY LP D + VD
Sbjct: 61 QFLSLDHVTIRGNNIRYFILSDSLPLDTLLVD 92
>gi|432105433|gb|ELK31648.1| Small nuclear ribonucleoprotein Sm D1 [Myotis davidii]
Length = 221
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 103 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS- 161
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 162 -IRGNNIRYFIL-PDSLPLDTL 181
>gi|281212453|gb|EFA86613.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 140
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR 63
+ L VT+ELKN I GT+ VD +N L+ ++ + K P +++ + IR
Sbjct: 1 MKFLMKLHNETVTIELKNGTIIHGTISGVDVSMNTHLKTVKLTLKGKNP--INLDSLSIR 58
Query: 64 GSVVRYVQLPPD 75
G+ +RY LP
Sbjct: 59 GNNIRYFILPES 70
>gi|237839011|ref|XP_002368803.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211966467|gb|EEB01663.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221481300|gb|EEE19694.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221502024|gb|EEE27770.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 121
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L + +ELKN I GT+ VD +N L+N ++ + P S+ +
Sbjct: 1 MKLVRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNP--TSLEHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDAT--RREAR 91
IRG+ +RY L PD + +D LL D T +R AR
Sbjct: 59 TIRGNNIRYFIL-PDSLPLDTLLIDDTPLQRPAR 91
>gi|330793030|ref|XP_003284589.1| hypothetical protein DICPUDRAFT_22541 [Dictyostelium purpureum]
gi|325085503|gb|EGC38909.1| hypothetical protein DICPUDRAFT_22541 [Dictyostelium purpureum]
Length = 116
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 10/76 (13%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD---QDKYPHMLSVRNCFIR 63
F L G ++T++L+++ I GT+ +VD++LNI+L + + + +DKY +L ++
Sbjct: 22 FLALKGTQITIQLRSNCEIYGTIENVDRHLNIELIDATITNRFGKDKYELLL------VQ 75
Query: 64 GSVVRYVQLPPDGVDV 79
+RY+ + PD +D+
Sbjct: 76 SRNIRYIHI-PDKIDL 90
>gi|189028851|sp|A7UXE4.2|LSM6_NEUCR RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|350296721|gb|EGZ77698.1| U6 snRNA-associated Sm-like protein LSm6 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CFI 62
+ +++G VTV+L + + +G L SVD Y+NI LE T +++ + + R+ F+
Sbjct: 17 FLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEFINGVKRRSYGDAFV 71
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 72 RGNNVMYIS 80
>gi|453080718|gb|EMF08768.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 132
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELK ++GT+ SV +N L N ++ K +S+ +
Sbjct: 1 MKLVRFLMKCSNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMT--PKGGSQISLDHV 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 59 SIRGSEIRYYIL-PDSLPLDTL 79
>gi|429965752|gb|ELA47749.1| hypothetical protein VCUG_00710 [Vavraia culicis 'floridensis']
Length = 90
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 14 EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73
++TVEL N + + G L +D +N+ L++ VV + H + V +RGS+++++ LP
Sbjct: 17 QLTVELDNGVKVTGKLMQMDDLMNLTLDD--VVLTEANGHNIKVERMMVRGSLIQFIVLP 74
Query: 74 P 74
P
Sbjct: 75 P 75
>gi|401885054|gb|EJT49185.1| mRNA processing-related protein [Trichosporon asahii var. asahii
CBS 2479]
Length = 129
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +DL G+ VTV+LK L RG L S D Y N++L ++ K L FIR +
Sbjct: 12 FLQDLTGKTVTVKLKWGLEYRGFLVSTDGYFNLQLTGAEEMENGKSNGQLG--EVFIRCN 69
Query: 66 VVRYVQL 72
V Y+++
Sbjct: 70 NVLYIRM 76
>gi|440903491|gb|ELR54142.1| Small nuclear ribonucleoprotein Sm D1, partial [Bos grunniens
mutus]
Length = 117
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ + L VT+ELKN + GT+ VD +N L+ ++ +++ P + + I
Sbjct: 1 LYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSI 58
Query: 63 RGSVVRYVQLPPDGVDVDLL 82
RG+ +RY L PD + +D L
Sbjct: 59 RGNNIRYFIL-PDSLPLDTL 77
>gi|390335655|ref|XP_783129.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Strongylocentrotus purpuratus]
Length = 161
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S + + VELKN G L + D ++NI L D D++ M
Sbjct: 28 VLPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRM---P 84
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 85 ECYIRGSTIKYLRIPDEVIDM 105
>gi|452837979|gb|EME39920.1| hypothetical protein DOTSEDRAFT_74704 [Dothistroma septosporum
NZE10]
Length = 131
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELK ++GT+ SV +N L N ++ K +S+ +
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGTIVQGTVASVSPQMNTNLRNAKMT--PKGGSQISLDHI 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 59 SIRGSEIRYYIL-PDSLPLDTL 79
>gi|254578266|ref|XP_002495119.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
gi|238938009|emb|CAR26186.1| ZYRO0B03762p [Zygosaccharomyces rouxii]
Length = 173
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ-------DKYPH 53
ML + G+++++ELKN + G L +VD ++N+ L N D
Sbjct: 1 MLPLYLLTNAKGQQMSIELKNGEIVEGELINVDNWMNVTLSNASQFDNIGTTVSVGPSKE 60
Query: 54 MLSVRNCFIRGSVVRYVQLPPDGVD 78
++ + +IRG+ ++Y++L + +D
Sbjct: 61 VVKAKEVYIRGTYIKYIRLQDEIID 85
>gi|388854781|emb|CCF51674.1| related to small nuclear ribonucleoprotein sm d3 [Ustilago
hordei]
Length = 134
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRNCFIRGSVV 67
+ VG +TVELK RGTL+ + N+ +++ D K H+ N +IRG+++
Sbjct: 13 EAVGHVITVELKGGACYRGTLYDAEDSFNVAMKDVTATAPDGKQSHL---ENIYIRGNML 69
Query: 68 RYVQLPPDGVDVDLLHDA 85
R++ +P D+L A
Sbjct: 70 RFIIVP------DMLQQA 81
>gi|154308522|ref|XP_001553597.1| hypothetical protein BC1G_08321 [Botryotinia fuckeliana B05.10]
Length = 80
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G +V V+L N L +G L SVD Y+NI LE V + K H + F+
Sbjct: 16 SFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 63 RGS 65
RG+
Sbjct: 72 RGN 74
>gi|367011739|ref|XP_003680370.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
gi|359748029|emb|CCE91159.1| hypothetical protein TDEL_0C02700 [Torulaspora delbrueckii]
Length = 175
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK---------Y 51
ML + G++V+VELKN + G L +VD ++N+ L N V QD
Sbjct: 1 MLPLYLLTNAKGQQVSVELKNGEIVEGELTNVDNWMNLTLSN--VSQQDTIGNSGNIAFQ 58
Query: 52 PHMLSVRNCFIRGSVVRYVQLPPDGVD 78
++ + ++RG+ ++Y++L + +D
Sbjct: 59 KEIVKSQEVYLRGTYIKYIKLQDNVID 85
>gi|344269970|ref|XP_003406820.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Loxodonta
africana]
Length = 133
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ + L VT+ELKN + GT+ VD +N L+ ++ +++ P L + I
Sbjct: 17 LYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLS--I 74
Query: 63 RGSVVRYVQLPPDGVDVDLL 82
RG+ +RY L PD + +D L
Sbjct: 75 RGNNIRYFIL-PDSLPLDTL 93
>gi|355701859|gb|EHH29212.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca mulatta]
gi|355754930|gb|EHH58797.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca
fascicularis]
Length = 119
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
+ + L VT+ELKN + GT+ VD +N L+ ++ +++ P + + I
Sbjct: 3 IYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSI 60
Query: 63 RGSVVRYVQLPPDGVDVDLL 82
RG+ +RY L PD + +D L
Sbjct: 61 RGNNIRYFIL-PDSLPLDTL 79
>gi|168013855|ref|XP_001759481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689411|gb|EDQ75783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L++ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLKGKVP--VALDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRR 88
+RG+ +RY L PD +++D LL D T R
Sbjct: 59 SVRGNNIRYYIL-PDSLNLDTLLVDDTPR 86
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + + VELKN G L D Y+NI + + + +D + C
Sbjct: 1 MLPLSLLRAASNHMMLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDG-DRFWKMPEC 59
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ ++++++P + +D
Sbjct: 60 YIRGNNIKFLRIPDEVID 77
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML + GR + VELKN G L D Y+N+ L+ + + DK+ +
Sbjct: 1 MLPLTLLNAAQGRPILVELKNGETFNGHLEKCDNYMNLTLQEVIQTMPEGDKF---FRMP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRG+ ++Y+++ + V+ + RE
Sbjct: 58 ECYIRGNNIKYLRVQDELVEQVAKQQSQHRE 88
>gi|357017089|gb|AET50573.1| hypothetical protein [Eimeria tenella]
Length = 125
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L + +ELKN + GT+ VD +N L+N ++ + P +S+ +
Sbjct: 1 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNP--VSMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 59 TIRGSNIRYFIL-PDSLPLDTL 79
>gi|302770463|ref|XP_002968650.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
gi|302816441|ref|XP_002989899.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300142210|gb|EFJ08912.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300163155|gb|EFJ29766.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
Length = 114
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++V + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVNGTITGVDISMNTHLKAVKLVLKGKNP--VTMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDATRR 88
IRG+ +RY L PD ++++ LL D T R
Sbjct: 59 SIRGNNIRYYIL-PDSLNLETLLVDDTPR 86
>gi|148691046|gb|EDL22993.1| mCG14669, isoform CRA_b [Mus musculus]
Length = 134
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 16 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 73
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 74 SIRGNNIRYFIL-PDSLPLDTL 94
>gi|5902102|ref|NP_008869.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
gi|6678055|ref|NP_033252.1| small nuclear ribonucleoprotein Sm D1 [Mus musculus]
gi|78050059|ref|NP_001030237.1| small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|157818069|ref|NP_001099633.1| small nuclear ribonucleoprotein Sm D1 [Rattus norvegicus]
gi|350535747|ref|NP_001232444.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|386780612|ref|NP_001247758.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|57089749|ref|XP_537302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Canis lupus
familiaris]
gi|114672526|ref|XP_512054.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan
troglodytes]
gi|126321779|ref|XP_001363297.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Monodelphis domestica]
gi|296222369|ref|XP_002757161.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Callithrix
jacchus]
gi|297702359|ref|XP_002828147.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pongo abelii]
gi|301785950|ref|XP_002928390.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Ailuropoda
melanoleuca]
gi|311259030|ref|XP_003127902.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Sus
scrofa]
gi|327282141|ref|XP_003225802.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Anolis
carolinensis]
gi|348576770|ref|XP_003474159.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cavia
porcellus]
gi|354481732|ref|XP_003503055.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cricetulus
griseus]
gi|395511627|ref|XP_003760058.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Sarcophilus
harrisii]
gi|395823105|ref|XP_003784837.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Otolemur
garnettii]
gi|397489347|ref|XP_003815691.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan paniscus]
gi|403265201|ref|XP_003924835.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403265203|ref|XP_003924836.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410977436|ref|XP_003995111.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Felis catus]
gi|426253705|ref|XP_004020533.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Ovis aries]
gi|51338665|sp|P62314.1|SMD1_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|60413325|sp|P62315.1|SMD1_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|75076018|sp|Q4R5F6.1|SMD1_MACFA RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|109894869|sp|Q3ZC10.1|SMD1_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|6980598|pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734042|pdb|3CW1|B Chain B, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734051|pdb|3CW1|M Chain M, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734060|pdb|3CW1|N Chain N, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734069|pdb|3CW1|O Chain O, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583602|pdb|3PGW|X Chain X, Crystal Structure Of Human U1 Snrnp
gi|315583611|pdb|3PGW|U Chain U, Crystal Structure Of Human U1 Snrnp
gi|332639434|pdb|2Y9A|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639441|pdb|2Y9A|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639448|pdb|2Y9A|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639458|pdb|2Y9B|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639465|pdb|2Y9B|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639472|pdb|2Y9B|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639482|pdb|2Y9C|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639489|pdb|2Y9C|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639496|pdb|2Y9C|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639506|pdb|2Y9D|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639513|pdb|2Y9D|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639520|pdb|2Y9D|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781210|pdb|3S6N|A Chain A, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302196|pdb|4F7U|A Chain A, Macromolecular Machine 6
gi|444302198|pdb|4F7U|C Chain C, Macromolecular Machine 6
gi|453055422|pdb|1VU2|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055430|pdb|1VU2|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055438|pdb|1VU2|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055446|pdb|1VU2|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055454|pdb|1VU2|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055462|pdb|1VU2|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453055474|pdb|1VU2|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|453055478|pdb|1VU3|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055486|pdb|1VU3|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055494|pdb|1VU3|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055502|pdb|1VU3|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055510|pdb|1VU3|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055518|pdb|1VU3|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056010|pdb|4F77|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453056018|pdb|4F77|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453056026|pdb|4F77|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453056034|pdb|4F77|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453056042|pdb|4F77|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453056050|pdb|4F77|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056062|pdb|4F77|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|338265|gb|AAA36620.1| small nuclear riboprotein Sm-D [Homo sapiens]
gi|705366|gb|AAA85339.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|1256741|gb|AAA96493.1| Sm-D autoantigen [Mus musculus]
gi|12804599|gb|AAH01721.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|12838127|dbj|BAB24092.1| unnamed protein product [Mus musculus]
gi|12841366|dbj|BAB25178.1| unnamed protein product [Mus musculus]
gi|12847588|dbj|BAB27628.1| unnamed protein product [Mus musculus]
gi|12850214|dbj|BAB28635.1| unnamed protein product [Mus musculus]
gi|19354162|gb|AAH24875.1| Small nuclear ribonucleoprotein D1 [Mus musculus]
gi|48734707|gb|AAH72427.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|49457472|emb|CAG47035.1| SNRPD1 [Homo sapiens]
gi|67970653|dbj|BAE01669.1| unnamed protein product [Macaca fascicularis]
gi|73586929|gb|AAI02988.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Bos taurus]
gi|74144965|dbj|BAE22192.1| unnamed protein product [Mus musculus]
gi|74193588|dbj|BAE22759.1| unnamed protein product [Mus musculus]
gi|119621535|gb|EAX01130.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|149031722|gb|EDL86672.1| small nuclear ribonucleoprotein D1 (predicted) [Rattus
norvegicus]
gi|187469818|gb|AAI67095.1| Small nuclear ribonucleoprotein D1 [Rattus norvegicus]
gi|197127450|gb|ACH43948.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197127451|gb|ACH43949.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197129948|gb|ACH46446.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197692155|dbj|BAG70041.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|197692401|dbj|BAG70164.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|208967432|dbj|BAG73730.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
gi|296473819|tpg|DAA15934.1| TPA: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|344251470|gb|EGW07574.1| Small nuclear ribonucleoprotein Sm D1 [Cricetulus griseus]
gi|380815842|gb|AFE79795.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|383420995|gb|AFH33711.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|384948966|gb|AFI38088.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|410215894|gb|JAA05166.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410253718|gb|JAA14826.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410297902|gb|JAA27551.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410328399|gb|JAA33146.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
Length = 119
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|392592920|gb|EIW82246.1| small nuclear ribo protein F, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 77
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
+ +DL G+ V V LK L +G L S D Y+N++L NT K L FIR
Sbjct: 8 PFLQDLTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALG--EVFIRC 65
Query: 65 SVVRYV-QLPPD 75
+ V Y+ + PP+
Sbjct: 66 NNVLYIREAPPE 77
>gi|317145212|ref|XP_003189687.1| U6 snRNA-associated Sm-like protein LSm6 [Aspergillus oryzae
RIB40]
Length = 80
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L + + +G L SVD Y+NI LE + K S + F+RG+
Sbjct: 15 FLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEYVNGKLRR--SYGDAFVRGN 72
Query: 66 VVRYVQ 71
V Y+
Sbjct: 73 NVLYIS 78
>gi|157135921|ref|XP_001663620.1| hypothetical protein AaeL_AAEL013425 [Aedes aegypti]
gi|403183364|gb|EJY58040.1| AAEL013425-PB [Aedes aegypti]
Length = 141
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRY 69
LV R + ++L+N+ ++ G + +VD ++NI +EN ++DQ + I VRY
Sbjct: 24 LVNRNILIDLRNESSVAGKITNVDGFMNISMENVVLIDQ--LGKHFRMEEFMIYPRYVRY 81
Query: 70 VQLPPDGVDVDLLHDATRREA 90
+ +P V L + +RE
Sbjct: 82 IHIPESIEIVPALEEHIKRET 102
>gi|393222663|gb|EJD08147.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 130
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML + R + VELKN G L + D ++NI L D D++ +
Sbjct: 1 MLPLTLLNAAQNRPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADADRF---WKLT 57
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRGS ++Y+++P +D
Sbjct: 58 ECYIRGSTIKYLRVPDKLLD 77
>gi|357149831|ref|XP_003575247.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Brachypodium distachyon]
Length = 114
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|219111981|ref|XP_002177742.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410627|gb|EEC50556.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 66
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVD---QDKYPHMLSVRNCF 61
+ K ++GR V V+L + + RG L +D YLNI +E T VD Q KY +CF
Sbjct: 8 FLKSVLGRPVQVKLNSGIEYRGILACLDGYLNIAMEQTEEYVDGQLQAKYG------DCF 61
Query: 62 IRGS 65
IRG+
Sbjct: 62 IRGN 65
>gi|393239356|gb|EJD46888.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + + VELKN G L + D ++NI L + D++ ++
Sbjct: 1 MLPLSLLNAAQSKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRGS ++Y+++P D L D ++E
Sbjct: 58 ECYIRGSTIKYLRVP------DQLLDTVKQE 82
>gi|336464624|gb|EGO52864.1| hypothetical protein NEUTE1DRAFT_96889 [Neurospora tetrasperma
FGSC 2508]
Length = 82
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CF 61
+ +++G VTV+L + + +G L SVD Y+NI LE T +++ + + R+ F
Sbjct: 16 GFLGEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEFINGVKRRSYGDAF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV-----DQDKYPHMLS 56
L S K G + VELKN G L S D ++NI L D D++ M
Sbjct: 2 LPLSLLKTAHGHPMLVELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRM-- 59
Query: 57 VRNCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + D
Sbjct: 60 -PECYIRGNTIKYLRVPDEVSD 80
>gi|340504873|gb|EGR31279.1| small nuclear ribonucleoprotein sm d1, putative [Ichthyophthirius
multifiliis]
Length = 110
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L + VT+ELKN I G++ VD +N L ++ + K P +S+ +
Sbjct: 1 MKLVRFLMKLKNQTVTIELKNGTQITGSIIGVDIRMNTHLSKVKLTIKGKNP--VSLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L P+ + +D L
Sbjct: 59 TIRGNNIRYFLL-PEALPIDTL 79
>gi|170584340|ref|XP_001896959.1| Sm protein [Brugia malayi]
gi|158595648|gb|EDP34187.1| Sm protein [Brugia malayi]
Length = 116
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G V VELKN + G L D +NI+++ V D +Y L + +I+G +R+V
Sbjct: 27 GSSVVVELKNYSTVHGILAGCDDAMNIEMKAVTVHDSKRYSAPLHCDSFYIQGKFIRFVH 86
Query: 72 L 72
Sbjct: 87 F 87
>gi|260944226|ref|XP_002616411.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
gi|238850060|gb|EEQ39524.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
Length = 71
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQL 72
E+ VELKN + G L + D ++N+ L N V + +K + +IRGS ++Y++L
Sbjct: 8 EEILVELKNGETVIGKLSNCDSWMNLTLSNV-VHNYNKGEKFNKIEEIYIRGSHIKYLRL 66
Query: 73 P 73
P
Sbjct: 67 P 67
>gi|171684873|ref|XP_001907378.1| hypothetical protein [Podospora anserina S mat+]
gi|170942397|emb|CAP68049.1| unnamed protein product [Podospora anserina S mat+]
Length = 125
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELK I GT+ SV +N L N ++ + + L N
Sbjct: 1 MKLVRFLMKCQNESVTIELKGGTIISGTIASVSPQMNTALRNVKMTPRGQETIQLETLN- 59
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
+RGS +RY L PD + +D L+ D+++ + +
Sbjct: 60 -VRGSTIRYYIL-PDSLPLDSLLIDDSSKPKNKA 91
>gi|389583797|dbj|GAB66531.1| small nuclear ribonucleoprotein Sm D1, partial [Plasmodium
cynomolgi strain B]
Length = 127
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M ++ L VT+ELKN + G + VD +N ++N +VV ++K
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLVTGIITGVDIRMNTHMKNVKVVIKNKNVGEYNVNTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVD 80
LS+ + IRG+ +RY LP D + VD
Sbjct: 61 QFLSLDHITIRGNNIRYFILSDSLPLDTLLVD 92
>gi|60832252|gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
Length = 120
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|158285999|ref|XP_308555.4| AGAP007246-PA [Anopheles gambiae str. PEST]
gi|157020260|gb|EAA04383.5| AGAP007246-PA [Anopheles gambiae str. PEST]
Length = 126
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P +++ +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDP--VTLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + ++ L+ DA + A+
Sbjct: 59 SIRGNNIRYYIL-PDSLPLETLLIDDAPKTRAK 90
>gi|326498561|dbj|BAJ98708.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTMKGKNP--VTLDHI 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ D R +++
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETLLVEDTPRVKSK 90
>gi|171185785|ref|YP_001794704.1| like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
gi|170934997|gb|ACB40258.1| Like-Sm ribonucleoprotein core [Pyrobaculum neutrophilum V24Sta]
Length = 143
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY 51
F + +L+GREV V L N RG LH+VD LNI L N +K+
Sbjct: 12 FVAELNNLIGREVQVVLSNGEVYRGVLHAVDNQLNIVLANAASKAGEKF 60
>gi|414865765|tpg|DAA44322.1| TPA: hypothetical protein ZEAMMB73_746512 [Zea mays]
Length = 126
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG+L + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|195995525|ref|XP_002107631.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190588407|gb|EDV28429.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 96
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K + VELKN G L + D ++NI L +D + C
Sbjct: 1 MLPLSLLKTAQSHPMLVELKNGETYNGHLVNCDNFMNINLREVICTSKDG-DRFWKMPEC 59
Query: 61 FIRGSVVRYVQLPPDG--VDVDLLHDATR 87
++RG++++Y+++P + V V L H R
Sbjct: 60 YLRGNMIKYLRIPDEVYIVTVKLKHHLAR 88
>gi|156844203|ref|XP_001645165.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
gi|189028754|sp|A7TK72.1|LSM6_VANPO RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|156115823|gb|EDO17307.1| hypothetical protein Kpol_1062p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 83
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS--VRNCFIR 63
+ +++G+ V+V+L + + +G L S+D ++N+ L NT + HML + F+R
Sbjct: 15 FLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESN-AHMLKRYENDVFLR 73
Query: 64 GSVVRYVQ 71
G+ V Y+
Sbjct: 74 GTQVMYIS 81
>gi|440302063|gb|ELP94416.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba
invadens IP1]
Length = 111
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L +T+ELK+ + GT+ VD Y+NI L+ ++ + K P +++
Sbjct: 1 MKLTRFLMRLTNEVLTIELKDGSIVTGTVVGVDNYMNIHLKVVQLTPKGKNP--ITLDQS 58
Query: 61 FIRGSVVRYVQLPPD-GVDVDLLHDATRREARG 92
IRG+ +R + LP +D L+ D R + +
Sbjct: 59 TIRGNNIRNIILPETLNLDTYLIDDTPRMKVKA 91
>gi|303389684|ref|XP_003073074.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon intestinalis ATCC 50506]
gi|303302218|gb|ADM11714.1| U6-snRNA associated small nuclear ribonucleoprotein
[Encephalitozoon intestinalis ATCC 50506]
Length = 71
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ +G+ V V++ + RGT ++D YLNI LE+ + + + P S + FI+GS
Sbjct: 6 YTAFIGKAVKVKICDGSEFRGTSAAIDAYLNISLESVFYLQKGQEPRYYS--SLFIKGSY 63
Query: 67 VRYVQL 72
+ ++ L
Sbjct: 64 IDHIAL 69
>gi|346470245|gb|AEO34967.1| hypothetical protein [Amblyomma maculatum]
gi|427785925|gb|JAA58414.1| Putative small nuclear ribonucleoprotein f [Rhipicephalus
pulchellus]
gi|442749057|gb|JAA66688.1| Putative small nuclear ribonucleoprotein f [Ixodes ricinus]
Length = 79
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + L RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKQIIGRPVVVKLNSGLDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVLYI 72
>gi|398389859|ref|XP_003848390.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
gi|339468265|gb|EGP83366.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
Length = 133
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VT+ELK ++GT+ S+ +N L N ++ + +++ +
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGTIVQGTIASISPQMNTNLRNAKMTPRGG--SQIALEHV 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRGS +RY L PD + +D L
Sbjct: 59 SIRGSEIRYYIL-PDSLPLDTL 79
>gi|195160693|ref|XP_002021209.1| GL24936 [Drosophila persimilis]
gi|194118322|gb|EDW40365.1| GL24936 [Drosophila persimilis]
Length = 118
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73
VT+ELKN I GT+ VD +N L++ R+ +++ P + + + IRG+ +RY LP
Sbjct: 8 VTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDP--VHLESLSIRGNNIRYFILP 64
>gi|260819208|ref|XP_002604929.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
gi|229290258|gb|EEN60939.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
Length = 121
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VTVELKN + GT+ VD +N L+ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTIKNREP--VQLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi
strain H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
V VELKN G L D+++N+ ++N +D + C++RG+ V+Y+++
Sbjct: 16 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDG-DKFWKISECYVRGNSVKYIRVQD 74
Query: 75 DGVDVDLLHDATRREAR 91
+ +D + + ++AR
Sbjct: 75 EAID-QAIEETNEQKAR 90
>gi|45200801|ref|NP_986371.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|44985499|gb|AAS54195.1| AGL296Wp [Ashbya gossypii ATCC 10895]
gi|374109616|gb|AEY98521.1| FAGL296Wp [Ashbya gossypii FDAG1]
Length = 168
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + G+++ +ELKN I G L +VD ++N+ L++ D+ L +
Sbjct: 1 MLPLYLLTNAKGQKLFIELKNGETIEGELVNVDNWMNLTLQSVVHAGSDQ---TLQLPEI 57
Query: 61 FIRGSVVRYVQLPPD 75
++RGS ++Y++L D
Sbjct: 58 YVRGSFIKYIRLQDD 72
>gi|149720998|ref|XP_001492698.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Equus
caballus]
Length = 116
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR 63
+ L VT+ELKN + GT+ VD +N L+ ++ +++ P + + IR
Sbjct: 1 MQFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIR 58
Query: 64 GSVVRYVQLPPDGVDVDLL 82
G+ +RY L PD + +D L
Sbjct: 59 GNNIRYFIL-PDSLPLDTL 76
>gi|384489888|gb|EIE81110.1| hypothetical protein RO3G_05815 [Rhizopus delemar RA 99-880]
Length = 129
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S G + VELK+ G L + D ++N+ L + DK+ +
Sbjct: 1 MLPLSLLHTAAGHPMLVELKSGETFNGHLVNCDNWMNLTLREVIQTSPEGDKF---WRLP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
C+IRG+ ++Y+ +P + VD+ ++ R++
Sbjct: 58 ECYIRGNTIKYLNVPEEIVDMVKEEESRTRQS 89
>gi|354547239|emb|CCE43973.1| hypothetical protein CPAR2_501980 [Candida parapsilosis]
Length = 132
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 6 YFKDLVGREVTVELK-NDLAIRGTLHSVDQYLNIKLENTRVV---DQDKYPHMLSVRNCF 61
+ K L+G+EV V LK N RG L S D YLN++L+NT + +DK+ + + F
Sbjct: 12 FIKSLIGQEVVVRLKWNKTEYRGQLMSTDNYLNLQLDNTFEIIYDSEDKFREE-EIGSIF 70
Query: 62 IRGSVVRYVQ 71
IR + V +++
Sbjct: 71 IRCNNVLFIR 80
>gi|195656155|gb|ACG47545.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG+L + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|403214951|emb|CCK69451.1| hypothetical protein KNAG_0C03440 [Kazachstania naganishii CBS
8797]
Length = 186
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN-----TR---VVDQDKYP 52
ML + G+ +++ELKN I G L++VD ++N+ L N TR + K
Sbjct: 1 MLPLYLLTNAKGQRMSIELKNGEIIEGELNNVDNWMNLTLINVTEHKTRDFGEISAGKQV 60
Query: 53 HMLSVRNCFIRGSVVRYVQLPPDGVD 78
M+ ++ +++G ++Y++L D +D
Sbjct: 61 EMIKLQEIYLKGIYIKYIRLQDDIID 86
>gi|344304341|gb|EGW34590.1| U6 snRNA-associated Sm-like protein LSm6 [Spathaspora
passalidarum NRRL Y-27907]
Length = 77
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ D++G V V+L+N + G L ++D Y+N+ L+N + K + FIRG+
Sbjct: 12 FLSDIIGSSVIVKLQNGINYTGNLQTIDGYMNVVLDNAKECSNGKVVR--DYGDVFIRGN 69
Query: 66 VVRYVQ 71
V Y+
Sbjct: 70 NVLYIS 75
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML G + VELK + G L S D Y+NI L+ D DK+ +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKF---FRLP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C++RG+ ++Y+++P + VD
Sbjct: 58 ECYVRGNNIKYLRVPDEVVDA 78
>gi|354544771|emb|CCE41496.1| hypothetical protein CPAR2_800480 [Candida parapsilosis]
Length = 79
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ DL+G V V+L + + RG L ++D Y+N+ LEN + +D + F+RG+
Sbjct: 14 FLGDLIGSPVKVKLYSGVEYRGDLQTIDGYMNVVLENGKEFIKDTMTR--DYGDLFLRGN 71
Query: 66 VVRYV 70
V Y+
Sbjct: 72 TVLYI 76
>gi|443713219|gb|ELU06184.1| hypothetical protein CAPTEDRAFT_162674 [Capitella teleta]
Length = 126
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L++ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTMVHGTITGVDVSMNTHLKSVKMTIKNRDP--IQLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYYLL-PDSLPLDTL 79
>gi|440897495|gb|ELR49167.1| hypothetical protein M91_06507, partial [Bos grunniens mutus]
Length = 121
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+
Sbjct: 1 FLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 58
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD + +D L
Sbjct: 59 NIRYFIL-PDSLPLDTL 74
>gi|401400718|ref|XP_003880841.1| sm protein, related [Neospora caninum Liverpool]
gi|325115253|emb|CBZ50808.1| sm protein, related [Neospora caninum Liverpool]
Length = 121
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L + +ELKN I GT+ VD +N L+N ++ + P S+ +
Sbjct: 1 MKLVRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTLKHGNP--TSLEHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD-LLHDAT--RREAR 91
IRG+ +RY L PD + +D LL D T +R AR
Sbjct: 59 TIRGNNIRYFIL-PDSLPLDTLLIDDTPLQRPAR 91
>gi|146096286|ref|XP_001467757.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania infantum
JPCM5]
gi|398020660|ref|XP_003863493.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania donovani]
gi|134072123|emb|CAM70822.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania infantum
JPCM5]
gi|322501726|emb|CBZ36807.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania donovani]
Length = 197
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
++ G+EV++EL + + GT+ D+ +N+ ++ D S R CFIRG+
Sbjct: 95 LRNCRGKEVSIELADGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKS-RECFIRGAS 153
Query: 67 VRYVQLPPDGVDVDLLHDATRREARG 92
V+ V++ D V + + R+ A G
Sbjct: 154 VKNVRM-TDSALVAVPAPSKRKAAGG 178
>gi|226507836|ref|NP_001151154.1| LOC100284787 [Zea mays]
gi|195644674|gb|ACG41805.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 116
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|226496545|ref|NP_001148353.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195618318|gb|ACG30989.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|414586802|tpg|DAA37373.1| TPA: small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 115
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|242065592|ref|XP_002454085.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|195604664|gb|ACG24162.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|238011798|gb|ACR36934.1| unknown [Zea mays]
gi|241933916|gb|EES07061.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|413922841|gb|AFW62773.1| Small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922842|gb|AFW62774.1| Small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 114
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|189028855|sp|A5DRQ6.2|LSM6_LODEL RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 80
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR-VVDQDKYPHMLSVRNCFIRG 64
+ ++G V V+L N + +G L ++D Y+N+ LEN + V+D H V F+RG
Sbjct: 15 FLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDV---FLRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|344230588|gb|EGV62473.1| hypothetical protein CANTEDRAFT_109388 [Candida tenuis ATCC
10573]
Length = 114
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 62
F + VTVELKN ++ G + S +N+ L+N +++ + L+ N I
Sbjct: 6 FLMHLPGSTSHPVTVELKNGNSVNGQVLSCSPTMNLALKNIKLIQPHQDAQFLNYMN--I 63
Query: 63 RGSVVRYVQLPPD 75
RG+ +R V LP D
Sbjct: 64 RGNQIRQVLLPED 76
>gi|195657699|gb|ACG48317.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|414865766|tpg|DAA44323.1| TPA: small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG+L + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|169601996|ref|XP_001794420.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
gi|111067960|gb|EAT89080.1| hypothetical protein SNOG_03875 [Phaeosphaeria nodorum SN15]
Length = 84
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CF 61
+ +++G VTV+L + + +G L SVD Y+NI LE + V + + +RN F
Sbjct: 21 GFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRV-----IRNWGDAF 75
Query: 62 IRGS 65
+RG+
Sbjct: 76 VRGN 79
>gi|195658123|gb|ACG48529.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG+L + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|393215596|gb|EJD01087.1| small nuclear ribonucleo protein SmF [Fomitiporia mediterranea
MF3/22]
Length = 85
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ ++L G+ V V LK L +G L S D Y+N++L NT + L FIR +
Sbjct: 12 FLQELTGKSVCVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGQSNGALG--EVFIRCN 69
Query: 66 VVRYVQLPPDGVDVD 80
V Y++ P ++ D
Sbjct: 70 NVLYIREAPSDINND 84
>gi|237842601|ref|XP_002370598.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|211968262|gb|EEB03458.1| U6 snRNA associated Sm-like protein LSm4, putative [Toxoplasma
gondii ME49]
gi|221502719|gb|EEE28439.1| small nuclear ribonucleoprotein sm, putative [Toxoplasma gondii
VEG]
Length = 214
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQL 72
R + VELK+ G L S D ++N+ L+++ +D + C+IRG++V+Y++L
Sbjct: 14 RPMMVELKSGETYSGLLASCDGFMNLHLKDSVCTSKDGE-RFWKLSECYIRGNMVKYIRL 72
>gi|425777993|gb|EKV16140.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum Pd1]
gi|425780629|gb|EKV18635.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum PHI26]
Length = 125
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + VTVELKN + GT+ SV +N L ++ + + +S+
Sbjct: 1 MKLVRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGR--DTISLDTI 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREARG 92
IRGS +RY L PD + +D L+ DA + + +
Sbjct: 59 NIRGSTIRYYIL-PDSLPLDTLLVDDAPKPKNKA 91
>gi|332225775|ref|XP_003262059.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nomascus
leucogenys]
Length = 119
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTILGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>gi|328766806|gb|EGF76858.1| hypothetical protein BATDEDRAFT_92275 [Batrachochytrium
dendrobatidis JAM81]
Length = 78
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
+ + ++G+ V V+L + + RG L +D Y+NI LE T+ H +CFIRG
Sbjct: 7 EFLQHVIGQPVVVKLNSGVDYRGILACLDGYMNIALEETKEYVDGVEKH--DYGDCFIRG 64
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 65 NNVLYI 70
>gi|330796086|ref|XP_003286100.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
gi|325083919|gb|EGC37359.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
Length = 126
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN ++GT+ VD +N L+ ++ + K P +++
Sbjct: 1 MKLVRFLMKLHNETVTIELKNGTIVQGTIAGVDVSMNTHLKTVKLTLKGKNP--VNLDTL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYYILP 71
>gi|365761122|gb|EHN02798.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 177
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT------RVVDQDK---Y 51
ML + G+++ +ELKN I+GTL +VD ++N+ L N +D +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSEENAIDSENNADK 60
Query: 52 PHMLSVRNCFIRGSVVRYVQLPPDGVD 78
+ + ++RG+ +++++L + +D
Sbjct: 61 SKAIKLNEIYVRGTFIKFIKLQDNIID 87
>gi|320585945|gb|EFW98624.1| lsm domain containing protein [Grosmannia clavigera kw1407]
Length = 84
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR---NCF 61
++ +++G V V+L + + +G L SVD Y+NI LE T +Y + + R + F
Sbjct: 17 AFLSEIIGSPVVVKLNSGVVYKGELQSVDGYMNIALEKTA-----EYVNGVKRRTYGDAF 71
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 72 VRGNNVMYIS 81
>gi|47028321|gb|AAT09093.1| U6 snRNA-associated Sm like protein [Bigelowiella natans]
Length = 119
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + VG + VEL+N G L S D ++N+ + +D + C
Sbjct: 1 MLPLSLLRTAVGHPMLVELRNGETYNGHLVSCDNWMNLLIRGVICTSRDG-ERFWQMDEC 59
Query: 61 FIRGSVVRYVQLP 73
+I+G+ ++Y+++P
Sbjct: 60 YIKGNTIKYLRIP 72
>gi|321257666|ref|XP_003193669.1| mRNA processing-related protein [Cryptococcus gattii WM276]
gi|317460139|gb|ADV21882.1| mRNA processing-related protein, putative [Cryptococcus gattii
WM276]
Length = 84
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +DL G+ V V LK L RG L S D Y+N++L NT ++ K L IR +
Sbjct: 12 FLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALG--EVLIRCN 69
Query: 66 VVRYVQLPPDGVD 78
V Y++ D
Sbjct: 70 NVLYIRWVATSAD 82
>gi|145510771|ref|XP_001441315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408561|emb|CAK73918.1| unnamed protein product [Paramecium tetraurelia]
Length = 363
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73
VTVELK G + + +N++L+ ++V +D P +S+ ++RGS +R+V +P
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRP--MSLEQVYLRGSQIRFVVIP 74
>gi|443924091|gb|ELU43165.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 81
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ ++L G+ V V LK L +G L S D Y+N++L NT + K L FIR +
Sbjct: 12 FLQELTGKPVFVRLKWGLEYKGYLVSTDSYMNLQLANTEEFEDGKSNGALG--EVFIRCN 69
Query: 66 VVRYVQLPPD 75
V Y++ P
Sbjct: 70 NVLYIREAPS 79
>gi|357623693|gb|EHJ74743.1| small nuclear ribonucleoprotein Sm D1 [Danaus plexippus]
Length = 125
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ +V ++K L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEE--LQLETL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFLLP 71
>gi|384246803|gb|EIE20292.1| hypothetical protein COCSUDRAFT_58002 [Coccomyxa subellipsoidea
C-169]
Length = 144
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC----F 61
+ + L G V VEL ND +RG L S D+ +N+ +++ Y + F
Sbjct: 17 FVQALEGLNVVVELHNDAVVRGMLESADEGMNM------IINGATYEPLQGSAQAMDFLF 70
Query: 62 IRGSVVRYVQLP 73
++G+ +RYV LP
Sbjct: 71 VKGARIRYVHLP 82
>gi|351709761|gb|EHB12680.1| Small nuclear ribonucleoprotein Sm D1, partial [Heterocephalus
glaber]
Length = 115
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+
Sbjct: 2 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 59
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD + +D L
Sbjct: 60 NIRYFIL-PDSLPLDTL 75
>gi|281354424|gb|EFB30008.1| hypothetical protein PANDA_018320 [Ailuropoda melanoleuca]
Length = 90
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+
Sbjct: 2 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 59
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD + +D L
Sbjct: 60 NIRYFIL-PDSLPLDTL 75
>gi|391338956|ref|XP_003743819.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like
[Metaseiulus occidentalis]
Length = 116
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ--DKYPHMLSVR 58
ML S + + VELKN G L S D ++NI L + DK+ +
Sbjct: 1 MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSREGDKF---WRIP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C++RG+ +R++++P + +++
Sbjct: 58 ECYVRGNTIRFLRIPDEVIEM 78
>gi|189028854|sp|Q4PG71.2|LSM6_USTMA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVDQDKYPHMLSVRNCFIRG 64
+ K ++G+ V V L + + RG L +D Y+NI LE T VD K S + FIRG
Sbjct: 18 FLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKN---SYGDAFIRG 74
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 75 NNVMYI 80
>gi|334329130|ref|XP_003341185.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Monodelphis domestica]
Length = 123
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+++ RG + +VD ++NI+L V D+ + + + F+ G
Sbjct: 21 LQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRL--AEVTYTDRQGQQVQLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>gi|384484598|gb|EIE76778.1| small nuclear ribonucleoprotein Sm D1 [Rhizopus delemar RA
99-880]
Length = 115
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V+VE+KN + GT+ VD +N L+ ++ +++ P +S+ +
Sbjct: 1 MKLVRFLMKLNNETVSVEMKNGTVVHGTITGVDMSMNTHLKTVKMTIKNRDP--VSLDSL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +R V L PD + +D L
Sbjct: 59 SIRGNNIRCVIL-PDSLPLDTL 79
>gi|350630884|gb|EHA19256.1| hypothetical protein ASPNIDRAFT_202763 [Aspergillus niger ATCC
1015]
Length = 77
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE + K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEKSEEFVNGKLSR--SYGDAFIRG 71
Query: 65 S 65
+
Sbjct: 72 N 72
>gi|326922125|ref|XP_003207302.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D1-like [Meleagris gallopavo]
Length = 118
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+
Sbjct: 5 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 62
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD + +D L
Sbjct: 63 NIRYFIL-PDSLPLDTL 78
>gi|307109545|gb|EFN57783.1| hypothetical protein CHLNCDRAFT_143127 [Chlorella variabilis]
Length = 126
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD-KYPHMLSVRNCFIRGSVV 67
+ G TVELK+ RG ++ + N++L N + +D K HM + FIRG V
Sbjct: 21 EATGHVCTVELKSGEIYRGEMYEAEDNWNVQLSNVQATGRDGKVTHM---EHIFIRGGRV 77
Query: 68 RYVQLPPDGVDVDLLHDA 85
R+V +P D+L +A
Sbjct: 78 RFVIVP------DMLKNA 89
>gi|361131665|gb|EHL03317.1| putative U6 snRNA-associated Sm-like protein LSm6 [Glarea
lozoyensis 74030]
Length = 106
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR-----N 59
+ +++G +VTV+L + + +G L SVD Y+NI LE T H+ V+ +
Sbjct: 16 GFLSEIIGSQVTVKLNSGVVYKGELQSVDGYMNIALEKTE-------EHVNGVKKRSYGD 68
Query: 60 CFIRGS 65
F+RG+
Sbjct: 69 AFVRGN 74
>gi|403172479|ref|XP_003331594.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375169870|gb|EFP87175.2| small nuclear ribonucleoprotein F [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 121
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +DL G+E V+LK + +G L SVD Y+N++L NT + + S+ FIR +
Sbjct: 12 FLQDLTGKECVVKLKWGMEYKGYLVSVDNYMNLQLANTEEYQNGQ--SVGSLGEVFIRCN 69
Query: 66 VVRY 69
V Y
Sbjct: 70 NVLY 73
>gi|327287168|ref|XP_003228301.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Anolis
carolinensis]
Length = 123
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR VEL+++ G + +VD ++NI+L T D+ L + F+ G
Sbjct: 21 LQGLTGRVTQVELRDESLAVGRVTNVDAFMNIRLGPTTFTDRTGRTSQLE--DLFVAGRS 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PD VD+
Sbjct: 79 VRYVHI-PDEVDI 90
>gi|225462054|ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis
vinifera]
Length = 114
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNP--VTMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSINLETL 79
>gi|440468641|gb|ELQ37792.1| LSM domain-containing protein [Magnaporthe oryzae Y34]
gi|440478854|gb|ELQ59653.1| LSM domain-containing protein [Magnaporthe oryzae P131]
Length = 76
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G VTV+L + + +G L SVD Y+NI LE V Q K S + F+
Sbjct: 16 SFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKR----SYGDAFV 71
Query: 63 RGS 65
RG+
Sbjct: 72 RGN 74
>gi|170064026|ref|XP_001867355.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
gi|167881462|gb|EDS44845.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
Length = 126
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + ++ L+ DA + A+
Sbjct: 59 SIRGNNIRYYIL-PDSLPLETLLIDDAPKTRAK 90
>gi|389613644|dbj|BAM20150.1| unknown unsecreted protein [Papilio xuthus]
Length = 173
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 8 KDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVV 67
K L G+ V V+L+ND + G L +VD ++N+ + V D + N F++ V
Sbjct: 63 KSLQGQYVNVDLRNDSNVCGLLLTVDGFMNLSF--STAVYCDPQGNEFFFENIFVQCRNV 120
Query: 68 RYVQLPPDGVDVDLLHDATRREARG 92
RYV +P ++ + + RE R
Sbjct: 121 RYVHIPEHVSIINNIKNEVAREVRN 145
>gi|431896295|gb|ELK05711.1| Small nuclear ribonucleoprotein Sm D1 [Pteropus alecto]
Length = 122
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+
Sbjct: 9 FLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGN 66
Query: 66 VVRYVQLPPDGVDVDLL 82
+RY L PD + +D L
Sbjct: 67 NIRYFIL-PDSLPLDTL 82
>gi|326511932|dbj|BAJ95947.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|157105264|ref|XP_001648790.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|157118312|ref|XP_001653165.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|108880134|gb|EAT44359.1| AAEL004263-PA [Aedes aegypti]
gi|108883288|gb|EAT47513.1| AAEL001382-PA [Aedes aegypti]
Length = 126
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLD--SL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + ++ L+ DA + A+
Sbjct: 59 SIRGNNIRYYIL-PDSLPLETLLIDDAPKTRAK 90
>gi|154342983|ref|XP_001567437.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064769|emb|CAM42875.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 116
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
++ G+EV++EL + + GT+ D+ +N+ ++ D S R CFIRG+
Sbjct: 14 LRNCRGKEVSIELSDGETVNGTVMRTDRAMNVVIKQCTRTGADGESFWKS-RECFIRGAS 72
Query: 67 VRYVQLPPDGVDVDLLHDATRREA 90
V+ V++ D V + A R+ A
Sbjct: 73 VKNVRM-TDSALVSVPVPAKRKAA 95
>gi|428184458|gb|EKX53313.1| hypothetical protein GUITHDRAFT_84386 [Guillardia theta CCMP2712]
Length = 130
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
+TVELK+ RGTL + +N + N + +D + ++ FIRG ++R+V LP
Sbjct: 18 ITVELKSGELYRGTLQEAEDNMNCNMTNVTMTGRDG--SISTLEQVFIRGGLIRFVILP- 74
Query: 75 DGVDVDLLHDA 85
D+L +A
Sbjct: 75 -----DILKNA 80
>gi|387594121|gb|EIJ89145.1| hypothetical protein NEQG_00964 [Nematocida parisii ERTm3]
gi|387595679|gb|EIJ93302.1| hypothetical protein NEPG_01644 [Nematocida parisii ERTm1]
Length = 83
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G EV +E+K+ GTLH D ++NI ++N ++ + C+I+GS ++ V
Sbjct: 12 GHEVKIEMKSGSVYTGTLHKCDLWMNIHMKNAVKNASEE------IEECYIKGSAIKTVH 65
Query: 72 LPPDGVDVD 80
+ +
Sbjct: 66 CKKKHLSMQ 74
>gi|119467878|ref|XP_001257745.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119405897|gb|EAW15848.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 98
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + RG L SVD Y+NI LE + K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRR--SYGDAFIRG 71
>gi|402216859|gb|EJT96942.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 132
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S + + VELKN + G L + D ++NI L + D++ ++
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETLNGHLVNCDNFMNITLREVYQTSPEGDRF---WKLK 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C++RGS ++Y+++P +D L RE
Sbjct: 58 ECYVRGSTIKYLRVPDQLLDEVQLEQFHARE 88
>gi|189197851|ref|XP_001935263.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187981211|gb|EDU47837.1| hypothetical protein PTRG_04930 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML G + VELK+ + G L + D ++N+ L D DK+ + +
Sbjct: 1 MLPLGLLTAATGHPMLVELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKF---MKLP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
++RGS ++Y+++P + VDV
Sbjct: 58 EIYVRGSTIKYLRVPDEIVDV 78
>gi|72005990|ref|XP_785584.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Strongylocentrotus purpuratus]
Length = 132
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L++ ++ +++ L +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKSVKLTPKNRETQQL--ESL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYYIL-PDSLPLDQL 79
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S K V VELKN G L D ++N+ L +D +
Sbjct: 1 MLPLSLLKTAQRHGVLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQ-RFFKMPEA 59
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
+IRG+ ++Y+ +P + VD + R E R
Sbjct: 60 YIRGNTIKYISVPEEVVDKVQEENLRRDEKR 90
>gi|171690156|ref|XP_001910003.1| hypothetical protein [Podospora anserina S mat+]
gi|170945026|emb|CAP71137.1| unnamed protein product [Podospora anserina S mat+]
Length = 91
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 6 YFKDLVGREVTVELK-NDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
+ +DLV ++V V LK N+ +G L S+D Y+NI+L NT + K+ L IR
Sbjct: 12 FLQDLVNKDVIVRLKWNETEYKGRLVSIDSYMNIQLANTEEFIEQKFTGTLG--QVLIRC 69
Query: 65 SVVRYVQLPPDG 76
+ V YV+ G
Sbjct: 70 NNVLYVRGAEGG 81
>gi|145495655|ref|XP_001433820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145545630|ref|XP_001458499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400940|emb|CAK66423.1| unnamed protein product [Paramecium tetraurelia]
gi|124426319|emb|CAK91102.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73
VTVELK G + + +N++L+ ++V +D P +S+ ++RGS +R+V +P
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRP--MSLEQVYLRGSQIRFVVIP 74
>gi|353229657|emb|CCD75828.1| Mername-AA168 protein (M67 family) [Schistosoma mansoni]
Length = 509
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV---DQDKYPHMLSVRNCFIRGSV 66
L+G+ VTV L ++ I G L S D +N++L++ ++ D D+ ++ V I G
Sbjct: 337 LIGKPVTVILLDETRITGRLCSCDGLMNLQLDSGVIIRKPDSDRLNAVIVVETIMIFGKR 396
Query: 67 VRYVQLP 73
+RYV +P
Sbjct: 397 IRYVTVP 403
>gi|256083438|ref|XP_002577951.1| Mername-AA168 protein (M67 family) [Schistosoma mansoni]
Length = 850
Score = 40.0 bits (92), Expect = 0.19, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV---DQDKYPHMLSVRNCFIRGSV 66
L+G+ VTV L ++ I G L S D +N++L++ ++ D D+ ++ V I G
Sbjct: 337 LIGKPVTVILLDETRITGRLCSCDGLMNLQLDSGVIIRKPDSDRLNAVIVVETIMIFGKR 396
Query: 67 VRYVQLP 73
+RYV +P
Sbjct: 397 IRYVTVP 403
>gi|340520476|gb|EGR50712.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT 43
S+ D++G V V+L + + +G L SVD Y+NI LE T
Sbjct: 16 SFLSDIIGNSVVVKLNSGVVYKGELQSVDGYMNIALEKT 54
>gi|212543325|ref|XP_002151817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
gi|210066724|gb|EEA20817.1| U6 snRNA-associated Sm-like protein LSm6, putative [Talaromyces
marneffei ATCC 18224]
Length = 80
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ ++ G VTV+L + + +G L SVD Y+NI LE T + S + F+RG
Sbjct: 14 TFLSEITGAPVTVKLNSGVVYQGELQSVDGYMNIALEKTEEYVNGQLRR--SYGDAFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>gi|223975955|gb|ACN32165.1| unknown [Zea mays]
gi|413935154|gb|AFW69705.1| hypothetical protein ZEAMMB73_559735 [Zea mays]
Length = 125
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG++ + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|226505392|ref|NP_001152085.1| LOC100285722 [Zea mays]
gi|194699166|gb|ACF83667.1| unknown [Zea mays]
gi|195652485|gb|ACG45710.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413935155|gb|AFW69706.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG++ + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|391333356|ref|XP_003741082.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Metaseiulus occidentalis]
Length = 120
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+N ++ ++ +S+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTVTGVDVAMNTHLKNVKMTLKN-AAEPVSLETL 59
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 60 SIRGNNIRYYILP 72
>gi|392560868|gb|EIW54050.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 161
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVRN 59
L S + + VELKN G L + D ++NI L + D++ ++
Sbjct: 32 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREAYQTSAEGDRF---WKLKE 88
Query: 60 CFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRGS ++Y+++P D L DA + E
Sbjct: 89 CYIRGSTIKYLRVP------DTLLDAVKDE 112
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML + G+ + VELKN G L D ++N+ + + + C
Sbjct: 100 MLPLALLHGAQGKPMLVELKNGETFNGHLIQCDNFMNLTMREVYQTSANG-EQFWKLPEC 158
Query: 61 FIRGSVVRYVQLPPDGVD-VDLLHDATR---REARGG 93
+IRG+ ++Y+++ + +D V DA R R +RGG
Sbjct: 159 YIRGNTIKYIRVTDNVIDQVKQQEDAYRQQNRSSRGG 195
>gi|145493031|ref|XP_001432512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399624|emb|CAK65115.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73
VTVELK G + + +N++L+ ++V +D P +S+ ++RGS +R+V +P
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRP--MSLEQVYLRGSQIRFVVIP 74
>gi|19172997|ref|NP_597548.1| U6 snRNA ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|19168664|emb|CAD26183.1| U6 snRNA ASSOCIATED SM-LIKE PROTEIN [Encephalitozoon cuniculi
GB-M1]
gi|449329730|gb|AGE96000.1| U6 snRNA associated sm-like protein [Encephalitozoon cuniculi]
Length = 88
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
R V +ELKN+ +RG LH D +N+ L++ + +D + + C+++G+ +R V+
Sbjct: 12 NRIVELELKNNDQLRGLLHKCDMAMNLHLKSVTIQKEDGSS--IFINECYLKGTSIRLVK 69
Query: 72 LPP 74
L
Sbjct: 70 LES 72
>gi|307110699|gb|EFN58935.1| hypothetical protein CHLNCDRAFT_34269 [Chlorella variabilis]
Length = 85
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K + G+ V V+L + + RG L +D Y+NI +E T + + +CFIRG+
Sbjct: 17 FLKSIKGKPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYG--DCFIRGN 74
Query: 66 VVRYVQ 71
V Y+
Sbjct: 75 NVLYIS 80
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML G + VELKN + G L + D Y+N+ L+ + DK+ +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKF---FRLP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C++RG+ ++Y+++P + VD+
Sbjct: 58 ECYVRGNNIKYLRVPDEIVDI 78
>gi|343426809|emb|CBQ70337.1| probable U6 snRNA-associated Sm-like protein LSm6 [Sporisorium
reilianum SRZ2]
Length = 80
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++G+ V V L + + RG L +D Y+NI LE T V+ S + FIRG+
Sbjct: 13 FLKGVIGKSVNVRLNSGIDYRGVLSCLDGYMNIALEQT--VEYVDGVQKNSYGDAFIRGN 70
Query: 66 VVRYV 70
V Y+
Sbjct: 71 NVMYI 75
>gi|224000756|ref|XP_002290050.1| hypothetical protein THAPSDRAFT_262381 [Thalassiosira pseudonana
CCMP1335]
gi|220973472|gb|EED91802.1| hypothetical protein THAPSDRAFT_262381, partial [Thalassiosira
pseudonana CCMP1335]
Length = 75
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVD---QDKYPHMLSVRNCF 61
+ K ++GR V V L RG L +D Y+NI +E T VD + KY +CF
Sbjct: 8 FLKAVLGRPVNVRLNTGTDYRGVLACLDGYMNIAMEQTEEYVDGQLKSKYG------DCF 61
Query: 62 IRGSVVRYV 70
IRG+ V Y+
Sbjct: 62 IRGNNVMYI 70
>gi|170578381|ref|XP_001894384.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Brugia malayi]
gi|158599053|gb|EDP36777.1| Probable U6 snRNA-associated Sm-like protein LSm4, putative [Brugia
malayi]
Length = 163
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 61
L S + + VELKN G L + D ++NI L + +D L ++ +
Sbjct: 34 LPLSLLRTAQNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDG-DRFLKMQEVY 92
Query: 62 IRGSVVRYVQLPPDGVDV 79
+RGS ++Y+++P D V++
Sbjct: 93 VRGSTIKYLRIPDDVVEL 110
>gi|149250230|ref|XP_001481216.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Mus musculus]
gi|309264642|ref|XP_003086326.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Mus
musculus]
Length = 119
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
I+G+ +RY L PD + +D L
Sbjct: 59 SIQGTNIRYFIL-PDSLPLDTL 79
>gi|148674280|gb|EDL06227.1| mCG21971 [Mus musculus]
Length = 134
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 16 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 73
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
I+G+ +RY L PD + +D L
Sbjct: 74 SIQGTNIRYFIL-PDSLPLDTL 94
>gi|219110787|ref|XP_002177145.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411680|gb|EEC51608.1| predicted protein, partial [Phaeodactylum tricornutum CCAP
1055/1]
Length = 87
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G ++TVE+KN RG L + +N+ L + V+ + + + N ++RGS +R++
Sbjct: 16 GMKITVEMKNGEIYRGLLVGAEDTMNVSLSD--VLRTARNGKITKMPNVYLRGSSIRFIA 73
Query: 72 LPPDGVDVDLLHDA 85
LP DLL A
Sbjct: 74 LP------DLLKSA 81
>gi|395526532|ref|XP_003765416.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Sarcophilus
harrisii]
Length = 123
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G TV+L+++ RG + +VD ++NI+L V D+ + + + F+ G
Sbjct: 21 LQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRL--AEVTYTDRQGQQVQLDDLFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PD VD+
Sbjct: 79 VRYVHI-PDEVDI 90
>gi|324523014|gb|ADY48174.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 166
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S + + VELKN G L S D ++NI L + D D++ M V
Sbjct: 38 VLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEV- 96
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
++RGS ++Y+++P D V++
Sbjct: 97 --YVRGSTIKYLRIPDDVVEL 115
>gi|226507464|ref|NP_001150683.1| LOC100284316 [Zea mays]
gi|194696928|gb|ACF82548.1| unknown [Zea mays]
gi|195619600|gb|ACG31630.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|195641042|gb|ACG39989.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413956400|gb|AFW89049.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG++ + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|396487975|ref|XP_003842766.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
gi|312219343|emb|CBX99287.1| hypothetical protein LEMA_P085260.1 [Leptosphaeria maculans JN3]
Length = 114
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 17 VELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VELK+ + G L + D ++N+ L D DK+ + + ++RGS ++Y+++P
Sbjct: 3 VELKSGETLNGLLINCDTWMNLTLREVVQTSADGDKFMRLPEI---YVRGSTIKYLRVPD 59
Query: 75 DGVDVDLLHDATRREARGG 93
+ VDV A + RGG
Sbjct: 60 EIVDVVKEQQAKDQANRGG 78
>gi|358410942|ref|XP_001254398.4| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|359063093|ref|XP_002685437.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
Length = 118
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
I+G+ +RY L PD + +D L
Sbjct: 59 SIQGNNIRYFIL-PDSLPLDTL 79
>gi|300122633|emb|CBK23201.2| unnamed protein product [Blastocystis hominis]
Length = 152
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
ML S + E+ VEL N G L S D Y+N+ L N ++ + C
Sbjct: 18 MLPLSLLRAARDNEILVELTNGETYNGKLVSCDSYMNLVL-NDAILTTKTGSRFFHLSEC 76
Query: 61 FIRGSVVRYVQLPPDGVD 78
+IRG+ V+ ++L D ++
Sbjct: 77 YIRGATVKCIRLSKDVIN 94
>gi|296490547|tpg|DAA32660.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 134
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
I+G+ +RY L PD + +D L
Sbjct: 59 SIQGNNIRYFIL-PDSLPLDTL 79
>gi|58266046|ref|XP_570179.1| mRNA processing-related protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134110882|ref|XP_775905.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258571|gb|EAL21258.1| hypothetical protein CNBD3130 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226412|gb|AAW42872.1| mRNA processing-related protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 87
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +DL G+ V V LK L RG L S D Y+N++L NT ++ K L IR +
Sbjct: 12 FLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALG--EVLIRCN 69
Query: 66 VVRYVQ 71
V Y++
Sbjct: 70 NVLYIR 75
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
V VELKN G L D+++N+ ++N +D + C++RG+ V+Y+++
Sbjct: 16 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDG-DKFWKISECYVRGNSVKYIRVQD 74
Query: 75 DGVDVDLLHDATRREARG 92
+D + + ++AR
Sbjct: 75 QAID-QAIEETNEQKARN 91
>gi|345486422|ref|XP_003425472.1| PREDICTED: 5'-nucleotidase domain-containing protein 1-like
[Nasonia vitripennis]
Length = 560
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ--DKYPHMLSVRNCFIRG 64
K + G +V+L+N+ +I GT+ D Y+NI +++ D D + + + F++
Sbjct: 23 LKAVEGERTSVDLRNEASIYGTVEQADGYMNIVMKDCIFTDPRGDSFKYEI----FFVQA 78
Query: 65 SVVRYVQLPP 74
+RYV +PP
Sbjct: 79 RNIRYVHIPP 88
>gi|221056240|ref|XP_002259258.1| small nuclear ribonucleoprotein d1 [Plasmodium knowlesi strain H]
gi|193809329|emb|CAQ40031.1| small nuclear ribonucleoprotein d1, putative [Plasmodium knowlesi
strain H]
Length = 127
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK--------YP 52
M ++ L VT+ELKN + G + VD +N ++N +VV +++
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLVTGIITGVDIRMNTHMKNVKVVIKNRNVGEYNVNTK 60
Query: 53 HMLSVRNCFIRGSVVRYV----QLPPDGVDVD 80
LS+ + IRG+ +RY LP D + VD
Sbjct: 61 QFLSLDHVTIRGNNIRYFILSDSLPLDTLLVD 92
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNI------KLENTRVVDQDKYPHML-----SVRNCFIR 63
V V+L+ND +RG LHS DQ+LN+ ++ R VD++ Y ++ SV F+R
Sbjct: 41 VYVKLRNDRELRGKLHSYDQHLNMLLGEVEEITTIREVDEETYEEIIKSNKRSVPYLFVR 100
Query: 64 GSVVRYV 70
G V +
Sbjct: 101 GDAVTLI 107
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
V VELKN G L D+++N+ ++N +D + C++RG+ V+Y+++
Sbjct: 43 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDG-DKFWKISECYVRGNSVKYIRVQD 101
Query: 75 DGVDVDLLHDATRREAR 91
+D + + ++AR
Sbjct: 102 QAID-QAIEETNEQKAR 117
>gi|379003135|ref|YP_005258807.1| Small nuclear ribonucleoprotein (snRNP)-like protein [Pyrobaculum
oguniense TE7]
gi|375158588|gb|AFA38200.1| Small nuclear ribonucleoprotein (snRNP)-like protein [Pyrobaculum
oguniense TE7]
Length = 143
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY 51
F + +L+GREV V L N RG LH+VD LNI L N +KY
Sbjct: 12 FVAELNNLLGREVRVVLHNGEIYRGVLHAVDNQLNIVLANATNNAGEKY 60
>gi|448079823|ref|XP_004194473.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
gi|359375895|emb|CCE86477.1| Piso0_004969 [Millerozyma farinosa CBS 7064]
Length = 89
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +++G VTV+L N + G L S+D Y+NI L+ T+ V + + F+RG+
Sbjct: 20 FLSEIIGNAVTVKLHNGVEYLGKLQSIDGYMNIVLDETKEVINGNIGR--TYGDVFLRGN 77
Query: 66 VVRYVQ 71
+Y+Q
Sbjct: 78 NGKYLQ 83
>gi|121709856|ref|XP_001272544.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119400694|gb|EAW11118.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 108
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE ++ K S + FIRG
Sbjct: 13 AFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR--SYGDAFIRG 70
>gi|388516873|gb|AFK46498.1| unknown [Lotus japonicus]
Length = 115
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ +A R +++
Sbjct: 59 SVRGTNIRYYIL-PDSLNLETLLVEEAPRVKSK 90
>gi|294463522|gb|ADE77290.1| unknown [Picea sitchensis]
Length = 114
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKIP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ D R + +
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETLLVEDTPRIKPK 90
>gi|402224280|gb|EJU04343.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 127
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+G +TVELK RG L + LNI L + V +D L + +IRGS+VR+
Sbjct: 16 LGHVITVELKTGQTYRGKLADAEDSLNISLRDITVTGRDGRVSQLD--SVYIRGSMVRFF 73
Query: 71 QLPPDGVDVDLLHDA 85
+P D+L +A
Sbjct: 74 IVP------DMLQNA 82
>gi|427786235|gb|JAA58569.1| Putative small nuclear ribonucleoprotein d1 [Rhipicephalus
pulchellus]
Length = 120
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREP--VQLDSL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYYLLP 71
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
V VELKN G L D+++N+ ++N +D + C++RGS V+Y+++
Sbjct: 14 VMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDG-DKFWKISECYVRGSSVKYIRVQD 72
Query: 75 DGVDVDLLHDATRR 88
++ + A ++
Sbjct: 73 QAIENAIEETAEQK 86
>gi|443703278|gb|ELU00915.1| hypothetical protein CAPTEDRAFT_152822 [Capitella teleta]
Length = 79
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE+T + + + FIRG+
Sbjct: 10 FLKQIIGRTVVVKLNSGVDYRGVLACLDGYMNIALEHTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVLYI 72
>gi|442757617|gb|JAA70967.1| Putative small nuclear ribonucleoprotein d1 [Ixodes ricinus]
Length = 118
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREP--VQLDSL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYYLLP 71
>gi|392577030|gb|EIW70160.1| hypothetical protein TREMEDRAFT_38820 [Tremella mesenterica DSM
1558]
Length = 124
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
+G VTVELK RG L + LNI L++ V +D + + +IRGS++R+V
Sbjct: 15 LGHVVTVELKTGEMYRGKLMEAEDNLNIALKDITVTARDGRVSQMDM--VYIRGSMIRFV 72
Query: 71 QLPPDGVDVDLLHDA 85
+P DLL A
Sbjct: 73 IVP------DLLSSA 81
>gi|225712226|gb|ACO11959.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
gi|225712252|gb|ACO11972.1| U6 snRNA-associated Sm-like protein LSm6 [Lepeophtheirus
salmonis]
Length = 85
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + RG L +D ++NI LE T + + + +CF+RG+
Sbjct: 13 FLKQILGRPVLVKLNSGSDYRGVLSCLDGHMNIALEQTEEYCEGQLKNKYG--DCFLRGN 70
Query: 66 VVRYV 70
V Y+
Sbjct: 71 NVLYI 75
>gi|189028856|sp|Q6BR90.2|LSM6_DEBHA RecName: Full=U6 snRNA-associated Sm-like protein LSm6
Length = 85
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR-VVDQDKYPHMLSVRNCFIRG 64
+ +++G VTV L N + G L S+D Y+NI L+ T+ V D+ + V FIRG
Sbjct: 20 FLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDV---FIRG 76
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 77 NNVLYIS 83
>gi|46107150|ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1]
Length = 106
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT 43
S+ +++G VTV+L + + +G L SVD Y+NI LE T
Sbjct: 16 SFLGNIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT 54
>gi|401626033|gb|EJS44001.1| lsm4p [Saccharomyces arboricola H-6]
Length = 179
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN-------TRVVDQDKYPH 53
ML + G+++ +ELKN I+GTL +VD ++N+ L N + + ++ +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSGESAINSENNAEN 60
Query: 54 MLSVR--NCFIRGSVVRYVQLPPDGVD 78
+V+ ++RG+ +++++L + +D
Sbjct: 61 NKAVKLNEIYVRGTFIKFIKLQDNIID 87
>gi|299747331|ref|XP_001836960.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
gi|298407471|gb|EAU84577.2| small nuclear riboprotein F [Coprinopsis cinerea okayama7#130]
Length = 81
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ ++L G+ V V LK L +G L S D Y+N++L NT K L FIR +
Sbjct: 11 FLQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALG--EVFIRCN 68
Query: 66 VVRYV-QLPPD 75
V Y+ + PP+
Sbjct: 69 NVLYIREAPPE 79
>gi|444723132|gb|ELW63794.1| Small nuclear ribonucleoprotein Sm D1 [Tupaia chinensis]
Length = 124
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+ +RY L P
Sbjct: 8 VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGNNIRYFIL-P 64
Query: 75 DGVDVDLL 82
D + +D L
Sbjct: 65 DSLPLDTL 72
>gi|221484764|gb|EEE23058.1| hypothetical protein TGGT1_039230 [Toxoplasma gondii GT1]
Length = 117
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR 44
+ L GR+V V+LK + +G L S D+Y+N++L+NT
Sbjct: 42 FLTSLTGRQVMVKLKWGIEYKGYLKSFDEYMNLQLQNTE 80
>gi|198437112|ref|XP_002129287.1| PREDICTED: similar to AGAP007246-PA isoform 1 [Ciona
intestinalis]
gi|198437114|ref|XP_002129303.1| PREDICTED: similar to AGAP007246-PA isoform 2 [Ciona
intestinalis]
Length = 121
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L++ ++ +++ P +++
Sbjct: 1 MKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNRDP--VNLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYYIL-PDSLPLDTL 79
>gi|198429171|ref|XP_002120650.1| PREDICTED: similar to conserved hypothetical protein [Ciona
intestinalis]
Length = 82
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVFYI 72
>gi|145592146|ref|YP_001154148.1| like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
gi|145283914|gb|ABP51496.1| Like-Sm ribonucleoprotein, core [Pyrobaculum arsenaticum DSM
13514]
Length = 143
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY 51
F + +L+GREV V L N RG LH+VD LNI L N +KY
Sbjct: 12 FVAELNNLLGREVRVVLHNGEIYRGILHAVDNQLNIVLANATNNAGEKY 60
>gi|388851890|emb|CCF54484.1| probable Small nuclear ribonucleoprotein F [Ustilago hordei]
Length = 82
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV 70
G+ V V LK + +G L S D Y+N++L NT + + K ML FIR + V Y+
Sbjct: 17 TGKPVLVRLKWGMEYKGFLVSTDSYMNLQLANTEELQEGKSNGMLG--EVFIRCNNVLYL 74
Query: 71 QLPPD 75
+ PD
Sbjct: 75 RELPD 79
>gi|324507721|gb|ADY43268.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 130
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S + + VELKN G L S D ++NI L + D D++ M V
Sbjct: 2 VLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEV- 60
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
++RGS ++Y+++P D V++
Sbjct: 61 --YVRGSTIKYLRIPDDVVEL 79
>gi|260791583|ref|XP_002590808.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
gi|229276005|gb|EEN46819.1| hypothetical protein BRAFLDRAFT_125735 [Branchiostoma floridae]
Length = 81
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVLYI 72
>gi|401426861|ref|XP_003877914.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494161|emb|CBZ29458.1| U6 snRNA-associated Sm-like protein LSm4p [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 190
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
++ G+EV++EL + + GT+ D+ +N+ ++ D R CF+RG+
Sbjct: 88 LRNCRGKEVSIELADGETVNGTVMRTDRAMNVVIKQCTRTGADGE-SFWKARECFVRGAS 146
Query: 67 VRYVQLPPDGVDVDLLHD--ATRREARGG 93
V+ V++ D L+ ++R+A GG
Sbjct: 147 VKNVRM----TDSALVAAPVPSKRKAAGG 171
>gi|313228903|emb|CBY18055.1| unnamed protein product [Oikopleura dioica]
Length = 124
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
+T E RG L ++++NI++++ ++ L+ N +IRG+ ++++ LP
Sbjct: 18 ITCETSTGEVFRGKLVEAEEHMNIQMQDVTATYRNGSTAQLA--NIYIRGTQIKFMILPE 75
Query: 75 DGVDVDLLHDATRREARG 92
+ +L ATR +A+G
Sbjct: 76 MLKNAPMLKVATRNQAQG 93
>gi|405120174|gb|AFR94945.1| small nuclear riboprotein F [Cryptococcus neoformans var. grubii
H99]
Length = 84
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ +DL G+ V V LK L RG L S D Y+N++L NT ++ K L IR +
Sbjct: 12 FLQDLTGKVVYVRLKWGLEYRGYLVSTDGYMNLQLANTEEIENGKSNGALG--EVLIRCN 69
Query: 66 VVRYVQ 71
V Y++
Sbjct: 70 NVLYIR 75
>gi|393234430|gb|EJD41993.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 123
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L+ ++ +++ P +S+
Sbjct: 1 MKLVRFLMKLNNETVQIELKNGSVVNGTITGVDVQMNTHLKTVKLSTRNRDP--VSLDTL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREA 90
IRG+ +RY L PD + +D L+ DA + ++
Sbjct: 59 SIRGNNIRYFVL-PDALPLDTLLVDDAPKPKS 89
>gi|341883036|gb|EGT38971.1| hypothetical protein CAEBREN_02711 [Caenorhabditis brenneri]
gi|341889446|gb|EGT45381.1| hypothetical protein CAEBREN_13550 [Caenorhabditis brenneri]
Length = 77
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD----QDKYPHMLSVRNCF 61
+ K ++G+ V V+L + + RG L +D Y+NI LE T Q+KY + F
Sbjct: 10 FLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG------DAF 63
Query: 62 IRGSVVRYV 70
IRG+ V Y+
Sbjct: 64 IRGNNVLYI 72
>gi|323305273|gb|EGA59020.1| Lsm4p [Saccharomyces cerevisiae FostersB]
Length = 187
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN-------TRVVDQDKYPH 53
ML + G+++ +ELKN I+G L +VD ++N+ L N + + +D
Sbjct: 1 MLPLYLLTNAXGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 54 MLSVR--NCFIRGSVVRYVQLPPDGVD 78
+V+ +IRG+ +++++L + +D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQDNIID 87
>gi|302907735|ref|XP_003049712.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730648|gb|EEU43999.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 89
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 7 FKDLVGREVTVELK-NDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+DLV R V V LK ++ +GTL SVD Y+N++L T DK S+ IR +
Sbjct: 12 LQDLVSRTVLVRLKWGEVEYKGTLVSVDSYMNLQLSGTEEYIADKPTG--SLGQVLIRCN 69
Query: 66 VVRYVQLPPDGVDVD 80
V +V+ +G D D
Sbjct: 70 NVLWVRGADEGKDAD 84
>gi|429965512|gb|ELA47509.1| hypothetical protein VCUG_01041 [Vavraia culicis 'floridensis']
Length = 70
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIR 63
F +K + R + V+L ++ +I G L S+D YLN+ L++ ++ + + +C ++
Sbjct: 2 FDLYKSFIRRRIKVKLNDNSSIEGDLISIDGYLNLALQHVLFYEEGIAEPFVFI-SCLVK 60
Query: 64 GSVVRYVQL 72
GS V Y+ L
Sbjct: 61 GSNVDYIAL 69
>gi|336373399|gb|EGO01737.1| hypothetical protein SERLA73DRAFT_132214 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386230|gb|EGO27376.1| hypothetical protein SERLADRAFT_382079 [Serpula lacrymans var.
lacrymans S7.9]
Length = 80
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ ++L G+ V V LK L +G L S D Y+N++L NT K L FIR +
Sbjct: 12 FMQELTGKPVYVRLKWGLEYKGFLVSTDGYMNLQLANTEEFQDGKSNGALG--EVFIRCN 69
Query: 66 VVRYV-QLPPD 75
V Y+ + PP+
Sbjct: 70 NVLYIREAPPE 80
>gi|387914462|gb|AFK10840.1| U6 snRNA-associated Sm-like protein LSm6 [Callorhinchus milii]
Length = 80
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>gi|328873443|gb|EGG21810.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 185
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ L VT+ELKN I GT+ VD +N L+ ++ + K P +++ IRG+
Sbjct: 39 FLMKLHNETVTIELKNGTIIHGTIVGVDVSMNTHLKTVKLTLKGKNP--INLDTLSIRGN 96
Query: 66 VVRYVQLP 73
+RY LP
Sbjct: 97 NIRYYILP 104
>gi|224066521|ref|XP_002302121.1| predicted protein [Populus trichocarpa]
gi|118482633|gb|ABK93236.1| unknown [Populus trichocarpa]
gi|118488779|gb|ABK96200.1| unknown [Populus trichocarpa]
gi|222843847|gb|EEE81394.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|5901998|ref|NP_009011.1| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|148234781|ref|NP_001087318.1| Sm protein F [Xenopus laevis]
gi|167583548|ref|NP_001107991.1| U6 snRNA-associated Sm-like protein LSm6 [Bos taurus]
gi|186910275|ref|NP_001119557.1| U6 snRNA-associated Sm-like protein LSm6 [Rattus norvegicus]
gi|284172395|ref|NP_001165068.1| Sm protein F [Xenopus (Silurana) tropicalis]
gi|300797601|ref|NP_001177933.1| U6 snRNA-associated Sm-like protein LSm6 [Mus musculus]
gi|350536543|ref|NP_001232484.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|388454641|ref|NP_001253894.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|118089868|ref|XP_420431.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gallus gallus]
gi|149637763|ref|XP_001510547.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Ornithorhynchus anatinus]
gi|291401158|ref|XP_002716966.1| PREDICTED: Sm protein F [Oryctolagus cuniculus]
gi|293352714|ref|XP_002728048.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|296195455|ref|XP_002745354.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Callithrix jacchus]
gi|297674437|ref|XP_002815234.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pongo
abelii]
gi|301761728|ref|XP_002916283.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
1 [Ailuropoda melanoleuca]
gi|301761730|ref|XP_002916284.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Ailuropoda melanoleuca]
gi|326918386|ref|XP_003205470.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like
[Meleagris gallopavo]
gi|327273948|ref|XP_003221741.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Anolis
carolinensis]
gi|332217354|ref|XP_003257824.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Nomascus leucogenys]
gi|332217356|ref|XP_003257825.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Nomascus leucogenys]
gi|332217358|ref|XP_003257826.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Nomascus leucogenys]
gi|332820272|ref|XP_003310523.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Pan troglodytes]
gi|332820274|ref|XP_003339112.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|332820276|ref|XP_003310524.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Pan troglodytes]
gi|332820278|ref|XP_003310526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Pan troglodytes]
gi|332820280|ref|XP_003310527.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Pan troglodytes]
gi|335293789|ref|XP_003357054.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Sus
scrofa]
gi|338722510|ref|XP_003364554.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm6-like [Equus
caballus]
gi|344291754|ref|XP_003417595.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Loxodonta africana]
gi|345781166|ref|XP_855162.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Canis lupus familiaris]
gi|345781168|ref|XP_003432092.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Canis lupus familiaris]
gi|348582250|ref|XP_003476889.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Cavia
porcellus]
gi|354477192|ref|XP_003500806.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like
[Cricetulus griseus]
gi|390460377|ref|XP_003732476.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like isoform
2 [Callithrix jacchus]
gi|392332759|ref|XP_003752686.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6-like [Rattus
norvegicus]
gi|395542575|ref|XP_003773202.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Sarcophilus
harrisii]
gi|395834523|ref|XP_003790249.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Otolemur
garnettii]
gi|397489777|ref|XP_003815894.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
paniscus]
gi|402870580|ref|XP_003899290.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Papio anubis]
gi|402870582|ref|XP_003899291.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Papio anubis]
gi|410038770|ref|XP_003950473.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410038772|ref|XP_003950474.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Pan
troglodytes]
gi|410956783|ref|XP_003985017.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Felis catus]
gi|426246981|ref|XP_004017265.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Ovis aries]
gi|426345621|ref|XP_004040503.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 1
[Gorilla gorilla gorilla]
gi|426345623|ref|XP_004040504.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 2
[Gorilla gorilla gorilla]
gi|426345625|ref|XP_004040505.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 3
[Gorilla gorilla gorilla]
gi|426345627|ref|XP_004040506.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 4
[Gorilla gorilla gorilla]
gi|426345629|ref|XP_004040507.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 5
[Gorilla gorilla gorilla]
gi|426345631|ref|XP_004040508.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 isoform 6
[Gorilla gorilla gorilla]
gi|441619228|ref|XP_004088560.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Nomascus
leucogenys]
gi|61227727|sp|P62312.1|LSM6_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|61227728|sp|P62313.1|LSM6_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm6
gi|5919153|gb|AAD56230.1|AF182292_1 U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens]
gi|5262862|emb|CAB45869.1| Lsm6 protein [Homo sapiens]
gi|12859166|dbj|BAB31555.1| unnamed protein product [Mus musculus]
gi|16359118|gb|AAH16026.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|20987896|gb|AAH30427.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|26347205|dbj|BAC37251.1| unnamed protein product [Mus musculus]
gi|51593502|gb|AAH78551.1| MGC85411 protein [Xenopus laevis]
gi|63995242|gb|AAY41032.1| unknown [Homo sapiens]
gi|67514294|gb|AAH98230.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|68534470|gb|AAH99484.1| Lsm6 protein [Mus musculus]
gi|74179952|dbj|BAE36530.1| unnamed protein product [Mus musculus]
gi|74196623|dbj|BAE34418.1| unnamed protein product [Mus musculus]
gi|74202626|dbj|BAE24870.1| unnamed protein product [Mus musculus]
gi|109939818|gb|AAI18349.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|110645766|gb|AAI18890.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|119226360|gb|AAI28976.1| MGC85411 protein [Xenopus laevis]
gi|119625434|gb|EAX05029.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625435|gb|EAX05030.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119625436|gb|EAX05031.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123983026|gb|ABM83254.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|148678915|gb|EDL10862.1| mCG7981, isoform CRA_a [Mus musculus]
gi|148678917|gb|EDL10864.1| mCG7981, isoform CRA_a [Mus musculus]
gi|149037959|gb|EDL92319.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037960|gb|EDL92320.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149037961|gb|EDL92321.1| rCG51654, isoform CRA_a [Rattus norvegicus]
gi|149058701|gb|EDM09858.1| rCG63582, isoform CRA_b [Rattus norvegicus]
gi|157928024|gb|ABW03308.1| LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|163916395|gb|AAI57145.1| MGC147213 protein [Xenopus (Silurana) tropicalis]
gi|189053256|dbj|BAG35062.1| unnamed protein product [Homo sapiens]
gi|197127464|gb|ACH43962.1| putative LSM6 homolog U6 small nuclear RNA associated
[Taeniopygia guttata]
gi|261860094|dbj|BAI46569.1| U6 snRNA-associated Sm-like protein LSm6 [synthetic construct]
gi|296478782|tpg|DAA20897.1| TPA: Sm protein F [Bos taurus]
gi|344244120|gb|EGW00224.1| U6 snRNA-associated Sm-like protein LSm6 [Cricetulus griseus]
gi|351714530|gb|EHB17449.1| U6 snRNA-associated Sm-like protein LSm6 [Heterocephalus glaber]
gi|355687640|gb|EHH26224.1| hypothetical protein EGK_16139 [Macaca mulatta]
gi|355762049|gb|EHH61876.1| hypothetical protein EGM_20027 [Macaca fascicularis]
gi|380783335|gb|AFE63543.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|384945050|gb|AFI36130.1| U6 snRNA-associated Sm-like protein LSm6 [Macaca mulatta]
gi|410287906|gb|JAA22553.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410287908|gb|JAA22554.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410349693|gb|JAA41450.1| LSM6 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395471|gb|JAA44792.1| Putative small nuclear ribonucleoprotein f [Desmodus rotundus]
gi|431918291|gb|ELK17518.1| U6 snRNA-associated Sm-like protein LSm6 [Pteropus alecto]
gi|449271295|gb|EMC81755.1| U6 snRNA-associated Sm-like protein LSm6 [Columba livia]
Length = 80
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>gi|363730104|ref|XP_001235936.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Gallus gallus]
Length = 112
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 15 VTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74
VT+ELKN + GT+ VD +N L+ ++ +++ P + + IRG+ +RY L P
Sbjct: 8 VTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGNNIRYFIL-P 64
Query: 75 DGVDVDLL 82
D + +D L
Sbjct: 65 DSLPLDTL 72
>gi|392580438|gb|EIW73565.1| hypothetical protein TREMEDRAFT_67422 [Tremella mesenterica DSM
1558]
Length = 86
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ ++L G+ V V+LK L RG L S D Y+N++L NT ++ K L FIR +
Sbjct: 12 FLQELTGKIVDVKLKWGLEYRGYLVSTDGYMNLQLANTEEMENGKSNGTLG--EVFIRCN 69
Query: 66 VVRYVQLPPDGVDVD 80
V Y+ D +D
Sbjct: 70 NVLYLGEAKDTPKMD 84
>gi|365766129|gb|EHN07630.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 187
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN-------TRVVDQDKYPH 53
ML + G+++ +ELKN I+G L +VD ++N+ L N + + +D
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 54 MLSVRN--CFIRGSVVRYVQLPPDGVD 78
+V++ +IRG+ +++++L + +D
Sbjct: 61 SKAVKSNEIYIRGTFIKFIKLQDNIID 87
>gi|17510579|ref|NP_490883.1| Protein LSM-6 [Caenorhabditis elegans]
gi|373219432|emb|CCD67971.1| Protein LSM-6 [Caenorhabditis elegans]
Length = 77
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD----QDKYPHMLSVRNCF 61
+ K ++G+ V V+L + + RG L +D Y+NI LE T Q+KY + F
Sbjct: 10 FLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG------DAF 63
Query: 62 IRGSVVRYV 70
IRG+ V Y+
Sbjct: 64 IRGNNVLYI 72
>gi|388508844|gb|AFK42488.1| unknown [Medicago truncatula]
Length = 115
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ +A R + +
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETLLVEEAPRVKPK 90
>gi|83272157|gb|ABC00745.1| putative small nuclear ribonucleoprotein D1 [Brassica napus]
Length = 118
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNP--VTMDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
+RG+ +RY L PD ++++ L+ D R + +
Sbjct: 59 SLRGNNIRYYIL-PDSLNLETLLVEDTPRLKPK 90
>gi|302811572|ref|XP_002987475.1| hypothetical protein SELMODRAFT_183167 [Selaginella
moellendorffii]
gi|300144881|gb|EFJ11562.1| hypothetical protein SELMODRAFT_183167 [Selaginella
moellendorffii]
Length = 135
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G VTVELK+ RGTL + N +LEN +D L + F+RGS VR++
Sbjct: 17 GHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQLE--HVFVRGSKVRFMI 74
Query: 72 LPPDGVDVDLLHDA 85
+P D+L +A
Sbjct: 75 IP------DMLKNA 82
>gi|242041599|ref|XP_002468194.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
gi|241922048|gb|EER95192.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
Length = 132
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVR 68
+ G VTVELK RG + + N +LEN +D L + FIRGS VR
Sbjct: 14 EAAGHVVTVELKTGEVYRGAMVECEDNWNCQLENITFTAKDGKVSQLE--HVFIRGSRVR 71
Query: 69 YVQLPPDGVDVDLLHDA---TRREAR 91
++ +P D+L +A R EAR
Sbjct: 72 FMIIP------DMLKNAPMFKRLEAR 91
>gi|224082616|ref|XP_002306766.1| predicted protein [Populus trichocarpa]
gi|222856215|gb|EEE93762.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNP--VTLDHL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
+RG+ +RY L PD ++++ L
Sbjct: 59 SVRGNNIRYYIL-PDSLNLETL 79
>gi|405968751|gb|EKC33791.1| U6 snRNA-associated Sm-like protein LSm6 [Crassostrea gigas]
Length = 79
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 10 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 67
Query: 66 VVRYV 70
V Y+
Sbjct: 68 NVLYI 72
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,410,879,099
Number of Sequences: 23463169
Number of extensions: 48356640
Number of successful extensions: 166461
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 1012
Number of HSP's that attempted gapping in prelim test: 165300
Number of HSP's gapped (non-prelim): 1692
length of query: 93
length of database: 8,064,228,071
effective HSP length: 63
effective length of query: 30
effective length of database: 6,586,048,424
effective search space: 197581452720
effective search space used: 197581452720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 69 (31.2 bits)