BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034490
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2
PE=3 SV=1
Length = 95
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2
PE=1 SV=1
Length = 95
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 76/90 (84%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGSVVRYVQLP D VD LL DA R+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2
OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 78/91 (85%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREAR 91
FIRGSVVRYV LP + VDV+ L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1
SV=1
Length = 95
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 70/90 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRREA 90
FIRGS VRYV L + VD +LL DATRRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRREV 90
>sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm2 PE=3 SV=1
Length = 96
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 69/89 (77%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+S+FK L+ EVTVELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 61 FIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
FIRGSVVRYV + VD LL DA RR+
Sbjct: 61 FIRGSVVRYVHMSSAYVDTILLADACRRD 89
>sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2
OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3
SV=1
Length = 97
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLS 56
MLFF YFK + E+ V LKND++I G L +VD +LNIK+EN + +++ + +
Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITN 60
Query: 57 VRNCFIRGSVVRYVQLPPDGVDVDLLHDATR 87
++ C IRGS ++ V+L +G++ ++ +ATR
Sbjct: 61 IQLCSIRGSAIKSVELKKNGLEEHMV-EATR 90
>sp|Q8SQK1|LSM2_ENCCU Probable U6 snRNA-associated Sm-like protein LSm2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=LSM2 PE=3
SV=1
Length = 94
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
MLF+ +F+ +G V+V LK + + G L +D YLN+ L + R++ +P + S+ C
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSS--HPGLSSISVC 58
Query: 61 FIRGSVVRYVQLPPDG 76
IRGS ++Y+ + D
Sbjct: 59 SIRGSSIKYILVDKDA 74
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus
GN=Lsm10 PE=1 SV=1
Length = 122
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L G+ TV+L+++ RG + +VD ++NI+L N V D++ H + + + F+ G
Sbjct: 21 LQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLAN--VTYTDRWGHQVELDDLFVTGRN 78
Query: 67 VRYVQLPPDGVDV 79
VRYV + PDGVD+
Sbjct: 79 VRYVHI-PDGVDI 90
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML S + G ++ VELKN G L + D ++NI L+N D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKF---WKIQ 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRR 88
+C+IRG+ ++Y+ +P + +D+ + T R
Sbjct: 58 SCYIRGNTIKYISVPDEIIDLVAEEEQTLR 87
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRREARGG 93
C+IRGS ++Y+++P + +D+ + +A + RGG
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM-VREEAAKGRGRGG 91
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K + VELKN G L S D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
C+IRGS ++Y+++P + +D+
Sbjct: 59 -CYIRGSTIKYLRIPDEIIDM 78
>sp|A4RQ29|LSM6_MAGO7 U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LSM6 PE=3
SV=1
Length = 83
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G VTV+L + + +G L SVD Y+NI LE V Q K S + F+
Sbjct: 16 SFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKK----RSYGDAFV 71
Query: 63 RGSVVRYVQLPP 74
RG+ V Y+ P
Sbjct: 72 RGNNVMYIAASP 83
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens
GN=LSM10 PE=1 SV=1
Length = 123
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSV 66
+ L GR TV+L+++ G + +VD ++NI+L +V D++ H + + + F+ G
Sbjct: 21 LQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRL--AKVTYTDRWGHQVKLDDLFVTGRN 78
Query: 67 VRYVQLPPD 75
VRYV +P D
Sbjct: 79 VRYVHIPDD 87
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6
PE=3 SV=2
Length = 85
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ D++G V V+L N L +G L SVD Y+NI LE V + K H + F+
Sbjct: 16 SFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 72 RGNNVMYIS 80
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR--NCF 61
F++FK +GR V V+L N + RG L VD +NI +E T ++ L + +CF
Sbjct: 18 FNFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQT----EEYLNGQLKTKYGDCF 73
Query: 62 IRGSVVRYVQLPP 74
+RG+ V Y+ P
Sbjct: 74 LRGNNVLYISAQP 86
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D DK+ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C+IRG+ ++Y+++P + +D
Sbjct: 59 -CYIRGNTIKYLRVPDEVID 77
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR--VVDQDKYPHMLSVRNCFI 62
S+ +++G +V V+L N L +G L SVD Y+NI LE V + K H + F+
Sbjct: 16 SFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVH----GDAFV 71
Query: 63 RGSVVRYV 70
RG+ V Y+
Sbjct: 72 RGNNVMYI 79
>sp|O42661|SMD1_SCHPO Small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd1 PE=1 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V++ELKN + GT+ SVD +N L+ ++ + + P + V
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREP--VPVETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVD--LLHDATRREAR 91
IRG+ +RY L PD + +D L+ D+T+ + +
Sbjct: 59 SIRGNNIRYYIL-PDSLPLDTLLIDDSTKPKQK 90
>sp|Q54F84|Y1015_DICDI Putative uncharacterized protein DDB_G0291015 OS=Dictyostelium
discoideum GN=DDB_G0291015 PE=4 SV=1
Length = 137
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS--VRNCFIRG 64
F L G ++T++L+++ I GT+ +VD YLNI+L + ++ + +Y + V+ I+
Sbjct: 35 FTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTN-TRYKNKRDEHVQEILIQS 93
Query: 65 SVVRYVQLPPDGVDVDLL 82
+R++Q+ PD +D++ L
Sbjct: 94 RNIRFIQI-PDKIDLNSL 110
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=LSM6 PE=3
SV=2
Length = 89
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CFI 62
+ +++G VTV+L + + +G L SVD Y+NI LE + V + + +RN F+
Sbjct: 22 FLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCKEVAEGRV-----IRNWGDAFV 76
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 77 RGNNVTYIS 85
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=lsm6 PE=3 SV=2
Length = 78
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE ++ K S + FIRG
Sbjct: 13 AFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRR--SYGDAFIRG 70
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 71 NNVLYI 76
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELKN G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPE-- 58
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
C++RG+ ++Y+++P + +D
Sbjct: 59 -CYVRGNTIKYLRVPDEVID 77
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=lsm6 PE=3 SV=2
Length = 80
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + RG L SVD Y+NI LE + K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRR--SYGDAFIRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
ML S K G + VELK+ G L + D ++NI L D D++ M
Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP--- 57
Query: 59 NCFIRGSVVRYVQLPPDGVD 78
+C+IRG+ ++Y+++P + +D
Sbjct: 58 DCYIRGNTIKYLRVPDEVID 77
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis
elegans GN=snr-3 PE=3 SV=1
Length = 126
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L V +ELKN + GT+ VD +N L + ++K P + +
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEP--VKLDTL 58
Query: 61 FIRGSVVRYVQLP-PDGVDVDLLHDATRRE 89
IRG+ +RY+ LP P +D L+ D R++
Sbjct: 59 SIRGNNIRYIILPDPLALDTLLIDDEPRKK 88
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=LSM6 PE=3 SV=2
Length = 82
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CF 61
+ +++G VTV+L + + +G L SVD Y+NI LE T ++Y + R+ F
Sbjct: 16 GFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEYVNGAKRRSYGDAF 70
Query: 62 IRGSVVRYVQ 71
+RG+ V Y+
Sbjct: 71 VRGNNVMYIS 80
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC
A1100) GN=lsm6 PE=3 SV=2
Length = 80
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ +++G VTV+L + + +G L SVD Y+NI LE + K S + FIRG
Sbjct: 14 AFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKR--SYGDAFIRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 58
ML + GR + VELKN G L + D Y+N+ L + D DK+ +
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKF---FRLP 57
Query: 59 NCFIRGSVVRYVQLPPDGVDVDLLHDATRRE 89
C+IRG+ ++Y+++ + + A +RE
Sbjct: 58 ECYIRGNNIKYLRIQDEVLSQVAKQQAQQRE 88
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila
melanogaster GN=SmD1 PE=1 SV=1
Length = 124
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN I GT+ VD +N L++ R+ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDP--VHLETL 58
Query: 61 FIRGSVVRYVQLP 73
IRG+ +RY LP
Sbjct: 59 SIRGNNIRYFILP 71
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ ++ G VTV+L + + +G L SVD Y+NI LE T K S + F+RG
Sbjct: 14 AFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRR--SYGDAFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides immitis
(strain RS) GN=LSM6 PE=3 SV=1
Length = 80
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64
++ + G VTV+L + + +G L S+D Y+NI LE T+ K S + F+RG
Sbjct: 14 AFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRK--SYGDVFVRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=lsm-6 PE=3 SV=2
Length = 82
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 8/69 (11%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRN---CFI 62
+ +++G VTV+L + + +G L SVD Y+NI LE T +++ + + R+ F+
Sbjct: 17 FLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKT-----EEFINGVKRRSYGDAFV 71
Query: 63 RGSVVRYVQ 71
RG+ V Y+
Sbjct: 72 RGNNVMYIS 80
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1
PE=2 SV=1
Length = 119
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1
PE=1 SV=1
Length = 119
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1
PE=3 SV=1
Length = 119
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
M + L VT+ELKN + GT+ VD +N L+ ++ +++ P + +
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETL 58
Query: 61 FIRGSVVRYVQLPPDGVDVDLL 82
IRG+ +RY L PD + +D L
Sbjct: 59 SIRGNNIRYFIL-PDSLPLDTL 79
>sp|A7TK72|LSM6_VANPO U6 snRNA-associated Sm-like protein LSm6 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=LSM6 PE=3
SV=1
Length = 83
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLS--VRNCFIR 63
+ +++G+ V+V+L + + +G L S+D ++N+ L NT + HML + F+R
Sbjct: 15 FLANIIGKPVSVKLYSGMMYKGKLESIDGFMNVALSNTSEHFESN-AHMLKRYENDVFLR 73
Query: 64 GSVVRYVQ 71
G+ V Y+
Sbjct: 74 GTQVMYIS 81
>sp|A5DRQ6|LSM6_LODEL U6 snRNA-associated Sm-like protein LSm6 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=LSM6 PE=3 SV=2
Length = 80
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR-VVDQDKYPHMLSVRNCFIRG 64
+ ++G V V+L N + +G L ++D Y+N+ LEN + V+D H V F+RG
Sbjct: 15 FLGGIIGSSVKVKLHNGVEYQGDLQTIDGYMNVALENGKEVIDNKVTKHYGDV---FLRG 71
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 72 NNVLYIS 78
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=LSM6 PE=3 SV=2
Length = 85
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT-RVVDQDKYPHMLSVRNCFIRG 64
+ K ++G+ V V L + + RG L +D Y+NI LE T VD K S + FIRG
Sbjct: 18 FLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKN---SYGDAFIRG 74
Query: 65 SVVRYV 70
+ V Y+
Sbjct: 75 NNVMYI 80
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR-VVDQDKYPHMLSVRNCFIRG 64
+ +++G VTV L N + G L S+D Y+NI L+ T+ V D+ + V FIRG
Sbjct: 20 FLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDV---FIRG 76
Query: 65 SVVRYVQ 71
+ V Y+
Sbjct: 77 NNVLYIS 83
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus GN=Lsm6
PE=3 SV=1
Length = 80
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens GN=LSM6
PE=1 SV=1
Length = 80
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65
+ K ++GR V V+L + + RG L +D Y+NI LE T + + + FIRG+
Sbjct: 11 FLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYG--DAFIRGN 68
Query: 66 VVRYV 70
V Y+
Sbjct: 69 NVLYI 73
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN-------TRVVDQDKYPH 53
ML + G+++ +ELKN I+G L +VD ++N+ L N + + +D
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 54 MLSVR--NCFIRGSVVRYVQLPPDGVD 78
+V+ +IRG+ +++++L + +D
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQDNIID 87
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV--DQDKYPHMLSVR 58
+L S K + VELKN G L + D ++NI L + D DK+ M
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKM---S 58
Query: 59 NCFIRGSVVRYVQLPPDGVDV 79
++RGS ++Y+++P VD+
Sbjct: 59 EAYVRGSTIKYLRIPETVVDL 79
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=LSM6 PE=3 SV=1
Length = 99
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVR--NCFIR 63
+ K +VG+ V V L + + RG L +D Y+NI LE T ++ +++ R + FIR
Sbjct: 31 FLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQT----EEHVNGVVTNRYGDAFIR 86
Query: 64 GSVVRYVQ 71
G+ V Y+
Sbjct: 87 GNNVLYIS 94
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71
G VT+E RG L + +N +L T V +D H L N FIRG+ +R++
Sbjct: 16 GHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLD--NVFIRGNKIRFMI 73
Query: 72 LPPDGVDVDLLHDA 85
LP D+L +A
Sbjct: 74 LP------DMLKNA 81
>sp|O59734|RUXF_SCHPO Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1
Length = 78
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR 44
+ + L+G+ V V LK +GTL SVD Y+N++L N
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAE 49
>sp|Q75BR7|LSM6_ASHGO U6 snRNA-associated Sm-like protein LSm6 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=LSM6 PE=3 SV=1
Length = 85
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKL-ENTRVVDQDKYPHMLSVRN-CFI 62
++ +++G+ V V+L + + +GTL S+D ++N+ L + + + ++ P + + F+
Sbjct: 15 TFLSNIIGKPVNVKLHSGMLYQGTLESIDGFMNVALVDASEYYESEQNPVIHRYESDVFL 74
Query: 63 RGSVVRYV 70
RG+ V Y+
Sbjct: 75 RGTQVMYI 82
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 6 YFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTR 44
+ +L G+ V V+LK + +G L SVD Y+N++L NT
Sbjct: 11 FLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTE 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.142 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,934,321
Number of Sequences: 539616
Number of extensions: 1175068
Number of successful extensions: 3264
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3183
Number of HSP's gapped (non-prelim): 129
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)