Query 034490
Match_columns 93
No_of_seqs 117 out of 1028
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 04:59:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emh_A Probable U6 snRNA-assoc 100.0 7.8E-30 2.7E-34 162.4 9.6 91 1-92 15-105 (105)
2 1b34_A Protein (small nuclear 100.0 1E-28 3.4E-33 160.2 10.7 86 1-88 1-87 (119)
3 2y9a_D Small nuclear ribonucle 100.0 5.5E-28 1.9E-32 158.2 12.0 86 1-88 4-89 (126)
4 1d3b_A Protein (small nuclear 100.0 1.6E-27 5.6E-32 143.4 10.8 72 1-74 4-75 (75)
5 1ljo_A Archaeal SM-like protei 99.9 9.1E-26 3.1E-30 136.1 9.8 73 1-75 4-77 (77)
6 1i4k_A Putative snRNP SM-like 99.9 2.8E-25 9.7E-30 133.7 9.9 73 1-75 3-75 (77)
7 1h64_1 SnRNP SM-like protein; 99.9 3.8E-25 1.3E-29 132.7 9.7 73 1-75 3-75 (75)
8 3s6n_F Small nuclear ribonucle 99.9 1.1E-24 3.7E-29 134.1 9.4 74 2-77 6-79 (86)
9 1n9r_A SMF, small nuclear ribo 99.9 9.4E-25 3.2E-29 136.2 8.0 72 1-74 20-92 (93)
10 1th7_A SnRNP-2, small nuclear 99.9 3.5E-24 1.2E-28 130.3 10.1 72 2-75 9-80 (81)
11 4emk_B U6 snRNA-associated SM- 99.9 1.1E-24 3.8E-29 130.8 7.4 72 1-74 3-74 (75)
12 1m5q_A SMAP3, small nuclear ri 99.9 3.5E-24 1.2E-28 140.7 10.3 83 4-92 2-84 (130)
13 1i8f_A Putative snRNP SM-like 99.9 8.1E-24 2.8E-28 128.7 9.6 71 1-74 10-80 (81)
14 1mgq_A SM-like protein; LSM, R 99.9 1.3E-23 4.3E-28 128.4 9.3 69 1-71 14-82 (83)
15 4emk_A U6 snRNA-associated SM- 99.9 3.1E-23 1.1E-27 129.6 11.1 72 1-74 19-91 (94)
16 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.5E-23 1.2E-27 129.6 9.7 79 2-80 10-93 (96)
17 3s6n_G Small nuclear ribonucle 99.9 3.2E-23 1.1E-27 124.8 8.2 71 3-75 5-75 (76)
18 4emg_A Probable U6 snRNA-assoc 99.9 9.2E-22 3.1E-26 122.6 10.5 73 2-74 9-92 (93)
19 3s6n_E Small nuclear ribonucle 99.9 3.4E-22 1.2E-26 124.4 7.7 73 1-74 15-91 (92)
20 1d3b_B Protein (small nuclear 99.9 2.4E-22 8.1E-27 124.3 6.9 74 2-75 4-85 (91)
21 4emk_C U6 snRNA-associated SM- 99.9 2E-21 6.7E-26 125.0 10.1 81 3-83 24-111 (113)
22 2fwk_A U6 snRNA-associated SM- 99.9 4E-22 1.4E-26 129.4 6.0 75 1-75 27-114 (121)
23 1b34_B Protein (small nuclear 99.9 3.7E-21 1.3E-25 124.3 9.5 75 1-75 26-114 (118)
24 3pgw_B SM B; protein-RNA compl 99.8 1.8E-19 6.2E-24 127.5 9.7 73 3-75 5-85 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.2 3.6E-10 1.2E-14 69.2 9.1 63 5-75 10-73 (86)
26 2ylb_A Protein HFQ; RNA-bindin 97.2 0.00048 1.7E-08 40.7 4.0 55 5-74 12-68 (74)
27 2vxe_A CG10686-PA; EDC3, CAR-1 97.1 0.0078 2.7E-07 36.6 9.2 66 9-74 10-83 (88)
28 1kq1_A HFQ, HOST factor for Q 97.1 0.00098 3.4E-08 39.7 5.0 37 5-41 10-48 (77)
29 3ahu_A Protein HFQ; SM-like mo 97.1 0.00086 2.9E-08 40.0 4.4 36 5-40 14-51 (78)
30 1y96_B Gemin7, SIP3, GEM-assoc 97.0 0.0088 3E-07 36.1 8.4 64 3-73 20-84 (85)
31 1u1s_A HFQ protein; SM-like ba 96.9 0.0012 4.2E-08 39.7 4.3 36 5-40 10-47 (82)
32 3sb2_A Protein HFQ; SM-like, R 96.9 0.0013 4.6E-08 39.3 4.0 56 5-75 11-68 (79)
33 2qtx_A Uncharacterized protein 96.8 0.0031 1E-07 37.0 5.1 32 11-42 24-55 (71)
34 4a53_A EDC3; RNA binding prote 96.7 0.0024 8E-08 41.1 4.7 55 7-74 7-63 (125)
35 2y90_A Protein HFQ; RNA-bindin 96.5 0.0023 7.8E-08 40.1 3.6 36 5-40 12-49 (104)
36 2fb7_A SM-like protein, LSM-14 96.5 0.0094 3.2E-07 36.7 6.1 68 7-74 14-89 (95)
37 3hfo_A SSR3341 protein; HFQ, S 96.0 0.013 4.4E-07 34.2 4.7 37 4-40 11-49 (70)
38 2vc8_A Enhancer of mRNA-decapp 96.0 0.016 5.6E-07 34.8 5.2 61 8-73 5-67 (84)
39 3hfn_A ASL2047 protein; HFQ, S 95.6 0.021 7.2E-07 33.4 4.4 37 4-40 13-51 (72)
40 1ycy_A Conserved hypothetical 94.8 0.15 5.2E-06 29.2 6.2 61 5-72 9-69 (71)
41 3rux_A BIRA bifunctional prote 90.9 0.44 1.5E-05 33.7 5.3 34 10-43 222-255 (270)
42 1ib8_A Conserved protein SP14. 90.1 0.29 1E-05 32.4 3.5 30 6-35 98-131 (164)
43 2rm4_A CG6311-PB, DM EDC3; enh 87.3 3.6 0.00012 25.2 8.4 62 8-73 8-70 (103)
44 1bia_A BIRA bifunctional prote 84.7 2.6 8.9E-05 30.1 6.2 49 9-64 270-318 (321)
45 2eay_A Biotin [acetyl-COA-carb 83.9 1 3.5E-05 31.0 3.5 48 9-64 185-232 (233)
46 2e12_A SM-like motif, hypothet 81.6 1.5 5.3E-05 26.6 3.2 19 12-30 28-46 (101)
47 2ej9_A Putative biotin ligase; 81.5 3.1 0.00011 28.6 5.3 32 10-42 190-221 (237)
48 4hcz_A PHD finger protein 1; p 78.7 3.8 0.00013 22.8 4.0 25 11-35 6-30 (58)
49 2dxu_A Biotin--[acetyl-COA-car 74.1 2.9 9.8E-05 28.8 3.3 30 11-42 188-217 (235)
50 3rkx_A Biotin-[acetyl-COA-carb 69.1 7.3 0.00025 28.0 4.6 32 10-42 277-308 (323)
51 1sg5_A ORF, hypothetical prote 68.5 2.4 8.1E-05 25.2 1.6 25 6-30 19-43 (86)
52 3by7_A Uncharacterized protein 67.2 19 0.00064 22.0 6.7 57 16-74 7-76 (100)
53 2eqj_A Metal-response element- 67.0 10 0.00034 21.5 4.0 25 11-35 16-40 (66)
54 3bfm_A Biotin protein ligase-l 66.1 10 0.00035 25.8 4.7 29 9-42 191-219 (235)
55 2xk0_A Polycomb protein PCL; t 65.4 12 0.0004 21.4 4.1 24 10-33 17-40 (69)
56 3uby_A DNA-3-methyladenine gly 62.5 12 0.00042 25.8 4.5 32 5-36 18-49 (219)
57 2e5p_A Protein PHF1, PHD finge 60.8 15 0.00053 20.8 4.0 25 11-35 12-36 (68)
58 2m0o_A PHD finger protein 1; t 59.4 4.9 0.00017 23.6 1.8 26 10-35 28-53 (79)
59 2qqr_A JMJC domain-containing 56.3 16 0.00054 22.9 3.9 33 10-42 7-41 (118)
60 3fb9_A Uncharacterized protein 56.1 19 0.00065 21.6 4.0 29 5-33 18-50 (90)
61 2e5q_A PHD finger protein 19; 49.8 17 0.00059 20.4 2.9 25 11-35 10-34 (63)
62 1zq1_A Glutamyl-tRNA(Gln) amid 43.5 17 0.0006 27.4 3.0 31 1-31 1-37 (438)
63 4a8c_A Periplasmic PH-dependen 42.4 40 0.0014 24.9 4.8 31 13-43 88-118 (436)
64 1ky9_A Protease DO, DEGP, HTRA 42.0 40 0.0014 25.1 4.8 32 13-44 111-142 (448)
65 3kl9_A PEPA, glutamyl aminopep 40.3 24 0.00084 25.5 3.3 24 8-31 95-118 (355)
66 3tee_A Flagella basal BODY P-r 36.1 25 0.00084 23.9 2.6 23 9-31 168-190 (219)
67 3stj_A Protease DEGQ; serine p 36.0 50 0.0017 23.6 4.4 31 13-43 88-118 (345)
68 2qs8_A XAA-Pro dipeptidase; am 34.2 96 0.0033 21.7 5.6 42 30-72 1-42 (418)
69 3sti_A Protease DEGQ; serine p 33.7 50 0.0017 22.4 3.9 31 13-43 88-118 (245)
70 3tjo_A Serine protease HTRA1; 31.2 76 0.0026 21.0 4.5 33 12-44 86-118 (231)
71 3lgi_A Protease DEGS; stress-s 30.7 78 0.0027 20.9 4.5 31 13-43 77-107 (237)
72 3pv2_A DEGQ; trypsin fold, PDZ 30.5 52 0.0018 24.5 3.8 31 13-43 102-132 (451)
73 2p5z_X Type VI secretion syste 29.6 70 0.0024 23.7 4.4 28 7-34 58-96 (491)
74 1lcy_A HTRA2 serine protease; 29.1 80 0.0027 22.1 4.5 31 13-43 71-101 (325)
75 3kdf_A Replication protein A 1 28.9 67 0.0023 19.8 3.6 21 5-33 15-35 (121)
76 3frn_A Flagellar protein FLGA; 27.8 46 0.0016 23.8 2.9 23 9-31 237-260 (278)
77 3dgp_B RNA polymerase II trans 27.3 26 0.0009 20.0 1.3 13 24-36 3-15 (71)
78 1y8t_A Hypothetical protein RV 26.7 87 0.003 21.7 4.3 31 13-43 64-94 (324)
79 1te0_A Protease DEGS; two doma 26.6 92 0.0031 21.6 4.4 31 13-43 66-96 (318)
80 4gop_A Putative uncharacterize 25.7 97 0.0033 18.8 3.9 22 5-34 11-32 (114)
81 2pi2_E Replication protein A 1 25.1 1.3E+02 0.0046 19.0 4.6 14 5-18 36-49 (142)
82 2equ_A PHD finger protein 20-l 24.7 1E+02 0.0035 17.3 4.1 25 11-35 12-36 (74)
83 3num_A Serine protease HTRA1; 24.3 1.3E+02 0.0046 20.9 4.9 32 12-43 69-100 (332)
84 2dir_A Thump domain-containing 24.3 71 0.0024 18.4 3.0 23 12-34 74-96 (98)
85 3qo6_A Protease DO-like 1, chl 24.0 1.1E+02 0.0038 21.6 4.5 31 13-43 77-107 (348)
86 2d6f_A Glutamyl-tRNA(Gln) amid 23.7 58 0.002 24.6 3.0 38 5-43 9-54 (435)
87 2xdp_A Lysine-specific demethy 22.2 1.2E+02 0.0042 18.9 3.9 24 10-33 66-89 (123)
88 2w5e_A Putative serine proteas 21.9 1.6E+02 0.0055 18.6 4.8 29 12-42 42-70 (163)
89 3j21_c 50S ribosomal protein L 20.5 74 0.0025 18.8 2.4 33 7-39 35-67 (87)
90 3fso_A Integrin beta-4, GP150; 20.3 61 0.0021 19.7 2.1 33 12-44 70-103 (123)
No 1
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.96 E-value=7.8e-30 Score=162.44 Aligned_cols=91 Identities=29% Similarity=0.531 Sum_probs=55.7
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCCCcchh
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVD 80 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~~~d~~ 80 (93)
+.|++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..++. ....++.+||||++|+||++|++++|++
T Consensus 15 ~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~-~~~~lg~v~IRG~nI~~I~~pd~l~d~p 93 (105)
T 4emh_A 15 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGD-KFFRLPECYIRGNNIKYLRIQDEVLSQV 93 (105)
T ss_dssp -----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC-EEEEEEEEEECGGGEEEEEC--------
T ss_pred CcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCc-eeeEcCeEEEeCCeEEEEecCHHHhhhh
Confidence 469999999999999999999999999999999999999999999876553 2478999999999999999999999999
Q ss_pred hhhHhhhhhhcC
Q 034490 81 LLHDATRREARG 92 (93)
Q Consensus 81 ~~~~~~~~~~~~ 92 (93)
+|+....+++||
T Consensus 94 ~~~~~~~~~~~~ 105 (105)
T 4emh_A 94 AKQQAQQRENRG 105 (105)
T ss_dssp ------------
T ss_pred hhhhhccccCCC
Confidence 999988888887
No 2
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.96 E-value=1e-28 Score=160.23 Aligned_cols=86 Identities=28% Similarity=0.465 Sum_probs=74.2
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCCC-cch
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDG-VDV 79 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~~-~d~ 79 (93)
|+|++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+..+++. .+++.+||||++|+||++|+++ +|+
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~--~~lg~v~IRG~nI~~I~~pd~l~~d~ 78 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP--VQLETLSIRGNNIRYFILPDSLPLDT 78 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCC--EEEEEEEECGGGEEEEECCTTCCHHH
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCce--eEcceEEEcCCeEEEEEeccccccch
Confidence 9999999999999999999999999999999999999999999999766543 7899999999999999999995 888
Q ss_pred hhhhHhhhh
Q 034490 80 DLLHDATRR 88 (93)
Q Consensus 80 ~~~~~~~~~ 88 (93)
.+.++++|+
T Consensus 79 ~l~~~~pK~ 87 (119)
T 1b34_A 79 LLVDVEPKV 87 (119)
T ss_dssp HTC------
T ss_pred hHhhhcccc
Confidence 888888873
No 3
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.95 E-value=5.5e-28 Score=158.17 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=78.6
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCCCcchh
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVD 80 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~~~d~~ 80 (93)
|.|++||++++|++|+|+|+||++|+|+|.+||.|||++|+||+++..++. ..+++.+||||++|+||++|+++.+++
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~--~~~l~~v~IRGnnI~~I~lpd~l~~~~ 81 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR--VAQLEQVYIRGSKIRFLILPDMLKNAP 81 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC--CEEEEEEEECGGGEEEEECCSSCSSSS
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc--EeecccEEEeCCEEEEEEccccccchH
Confidence 579999999999999999999999999999999999999999999976654 378999999999999999999998888
Q ss_pred hhhHhhhh
Q 034490 81 LLHDATRR 88 (93)
Q Consensus 81 ~~~~~~~~ 88 (93)
+|++..++
T Consensus 82 ~l~~~~~k 89 (126)
T 2y9a_D 82 MLKSMKNK 89 (126)
T ss_dssp HHHHHHHH
T ss_pred Hhhhhhhc
Confidence 88866553
No 4
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.95 E-value=1.6e-27 Score=143.43 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=67.8
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
|.|++||++++|++|+|+|++|++|+|+|.+||+|||++|+||+++.+++. ..+++.+||||++|+||++||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~--~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR--VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC--EEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc--EEEcCeEEEeCCEEEEEEcCC
Confidence 679999999999999999999999999999999999999999999986654 478999999999999999996
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.93 E-value=9.1e-26 Score=136.07 Aligned_cols=73 Identities=27% Similarity=0.437 Sum_probs=66.7
Q ss_pred CchhHHHhhcCCCEEEEEEcCC-cEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 1 MLFFSYFKDLVGREVTVELKND-LAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g-~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
|.|+++|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..++. ..++|.++|||++|++|+.|++
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEK--VRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCc--EeECCeEEEeCCeEEEEEeCCC
Confidence 6899999999999999999999 99999999999999999999999876543 4789999999999999999874
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.93 E-value=2.8e-25 Score=133.73 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=67.1
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
+.|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+.. .+++|.++|||++|++|+.|+.
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEV--VRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEECC-
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCc--EeECCEEEECCCEEEEEEeCCC
Confidence 469999999999999999999999999999999999999999999876543 4789999999999999999874
No 7
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.92 E-value=3.8e-25 Score=132.67 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=65.9
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
+.|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+.. ..++|.++|||++|++|+.+++
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEV--VKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCc--eeECCEEEECCCEEEEEEeCCC
Confidence 359999999999999999999999999999999999999999999876543 4789999999999999998863
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.92 E-value=1.1e-24 Score=134.13 Aligned_cols=74 Identities=27% Similarity=0.343 Sum_probs=65.9
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCCCc
Q 034490 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGV 77 (93)
Q Consensus 2 ~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~~~ 77 (93)
.|++||++++||+|+|+|+||++|+|+|.+||+|||++|+||++...+.. ...++.++|||++|+||+.|++..
T Consensus 6 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~--~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 6 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL--SGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp CHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEESSEEECGGGEEEEEECC---
T ss_pred CcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCce--eeEccEEEEeCCeEEEEEeCCccc
Confidence 69999999999999999999999999999999999999999998765432 468999999999999999998643
No 9
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.91 E-value=9.4e-25 Score=136.23 Aligned_cols=72 Identities=31% Similarity=0.403 Sum_probs=61.3
Q ss_pred CchhHHHhhcCCCEEEEEEcCC-cEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 1 MLFFSYFKDLVGREVTVELKND-LAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g-~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
|.|+++|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..++. ..++|.+||||++|+||..++
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~--~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVS--HGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEE--EEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCe--EeEcCEEEEcCCeEEEEEeCC
Confidence 5799999999999999999999 99999999999999999999999865443 478999999999999999886
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.91 E-value=3.5e-24 Score=130.28 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=65.8
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 2 ~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
.|+++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+.. ...+|.++|||++|++|+.+++
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGS--GKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSC--EEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCc--eeECCEEEECCCEEEEEEecCC
Confidence 58999999999999999999999999999999999999999999986654 4789999999999999998873
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.91 E-value=1.1e-24 Score=130.81 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=65.0
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
+.|+++|++++||+|+|+|+||++|+|+|.+||+|||++|+||++...+.. ..++|.++|||++|+||+..+
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKK--TNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEE--EEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCc--ccEecEEEEcCCeEEEEEecC
Confidence 469999999999999999999999999999999999999999999875443 478999999999999998654
No 12
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.91 E-value=3.5e-24 Score=140.73 Aligned_cols=83 Identities=27% Similarity=0.353 Sum_probs=76.8
Q ss_pred hHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCCCcchhhhh
Q 034490 4 FSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDVDLLH 83 (93)
Q Consensus 4 ~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~~~d~~~~~ 83 (93)
+++|++++||+|+|+|+||++|+|+|.+||+|||++|+||+++.. .++|.++|||++|++|+.+++.+|++.|+
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~~------~~lg~v~IRG~nI~~I~~~d~~~d~~~f~ 75 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAG------EKFNRVFIMYRYIVHIDSTERRIDMREFA 75 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTTC------CEEEEEEECGGGEEEEEECCCCCCHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEcC------CEeceEEEeCCeEEEEEcCCcccCHHHHH
Confidence 689999999999999999999999999999999999999999841 46899999999999999999999999999
Q ss_pred HhhhhhhcC
Q 034490 84 DATRREARG 92 (93)
Q Consensus 84 ~~~~~~~~~ 92 (93)
++.+++++|
T Consensus 76 ~~~~r~~pg 84 (130)
T 1m5q_A 76 KQAEKIFPG 84 (130)
T ss_dssp HHHHHHSTT
T ss_pred HHHhhcCCC
Confidence 999887544
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.91 E-value=8.1e-24 Score=128.70 Aligned_cols=71 Identities=28% Similarity=0.472 Sum_probs=65.2
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
+.|+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+ ++. ..+.+|.++|||++|++|+.++
T Consensus 10 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~--~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDG--NVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETT--EEEEEEEEEECGGGEEEEEECC
T ss_pred cchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCC--cccCCCEEEECCCEEEEEEeCC
Confidence 3699999999999999999999999999999999999999999999 333 2478999999999999999886
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.90 E-value=1.3e-23 Score=128.44 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=64.2
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEE
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQ 71 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~ 71 (93)
+.|+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+..+.. ...+|.++|||++|++|+
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~--~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEV--TRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEE--EEEEEEEEECGGGEEEEE
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCc--ccCCCEEEECCCEEEEEE
Confidence 479999999999999999999999999999999999999999999876543 478999999999999997
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.90 E-value=3.1e-23 Score=129.60 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=64.9
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEc-CCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD-QDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~-~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
+.|+.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+. ++.. ...+|.++|||++|++|+...
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~--~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGV--TEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCC--EEEEEEEEECSTTEEEEEECC
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCc--EeEcCEEEEcCCEEEEEEeCC
Confidence 47999999999999999999999999999999999999999999987 4333 478999999999999998653
No 16
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.5e-23 Score=129.63 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=65.7
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCC-----CCceEeeeeEEEecCeEEEEEcCCCC
Q 034490 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK-----YPHMLSVRNCFIRGSVVRYVQLPPDG 76 (93)
Q Consensus 2 ~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~-----~~~~~~~~~~~IRG~~I~~I~~~~~~ 76 (93)
-|+.+|++++||+|+|+|+||++|.|+|.+||+|||++|+||+|..... ....+.+|.++|||++|.+|..+++.
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 4899999999999999999999999999999999999999999975321 12347899999999999999999876
Q ss_pred cchh
Q 034490 77 VDVD 80 (93)
Q Consensus 77 ~d~~ 80 (93)
.|..
T Consensus 90 ~d~~ 93 (96)
T 3bw1_A 90 DDGA 93 (96)
T ss_dssp ---C
T ss_pred cccc
Confidence 6643
No 17
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.89 E-value=3.2e-23 Score=124.79 Aligned_cols=71 Identities=13% Similarity=0.290 Sum_probs=53.0
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 3 p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
|.++|++++|++|+|+|+||++|+|+|.+||+|||++|+||+|+..++. ...+|.++|||++|++|+..|.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~--~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ--QNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCc--EeEcCEEEECCCeEEEEEeccC
Confidence 5789999999999999999999999999999999999999999876544 3689999999999999997653
No 18
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.87 E-value=9.2e-22 Score=122.60 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=64.3
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCC----CC-------CceEeeeeEEEecCeEEEE
Q 034490 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD----KY-------PHMLSVRNCFIRGSVVRYV 70 (93)
Q Consensus 2 ~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~----~~-------~~~~~~~~~~IRG~~I~~I 70 (93)
.|+.+|+.++|++|+|+|++|++|+|+|.+||.|||++|+||+|+... +. ...+.+|.+||||++|.+|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 699999999999999999999999999999999999999999997542 11 2357899999999999999
Q ss_pred EcCC
Q 034490 71 QLPP 74 (93)
Q Consensus 71 ~~~~ 74 (93)
+.|.
T Consensus 89 ~p~~ 92 (93)
T 4emg_A 89 APPR 92 (93)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9763
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.87 E-value=3.4e-22 Score=124.41 Aligned_cols=73 Identities=11% Similarity=0.287 Sum_probs=65.3
Q ss_pred CchhHHHhhcCCCEEEEEE----cCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 1 MLFFSYFKDLVGREVTVEL----KNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L----~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
+.|+.||.++++++|+|++ ++|++|+|+|.+||+|||++|+||+|+..+... ..++|.++|||++|.+|+.++
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~-~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKS-RKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCC-EEEEEEEEECGGGEEEEEEC-
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCc-eeEcCeEEEeCCEEEEEEeCC
Confidence 3699999999999999999 999999999999999999999999998744332 478999999999999999765
No 20
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.87 E-value=2.4e-22 Score=124.34 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=62.4
Q ss_pred chhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcC---C-----CCCceEeeeeEEEecCeEEEEEcC
Q 034490 2 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ---D-----KYPHMLSVRNCFIRGSVVRYVQLP 73 (93)
Q Consensus 2 ~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~---~-----~~~~~~~~~~~~IRG~~I~~I~~~ 73 (93)
-|.++|++++|++|+|+|+||++|.|+|.+||.|||++|+||+|+.. . .....+.+|.++|||++|.+|+++
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 36789999999999999999999999999999999999999999631 1 111357899999999999999988
Q ss_pred CC
Q 034490 74 PD 75 (93)
Q Consensus 74 ~~ 75 (93)
+.
T Consensus 84 ~~ 85 (91)
T 1d3b_B 84 GP 85 (91)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 21
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.86 E-value=2e-21 Score=124.95 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=56.4
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCC-----CCceEeeeeEEEecCeEEEEEcCCC--
Q 034490 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK-----YPHMLSVRNCFIRGSVVRYVQLPPD-- 75 (93)
Q Consensus 3 p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~-----~~~~~~~~~~~IRG~~I~~I~~~~~-- 75 (93)
|...|.+++|++|+|+|+||++|.|+|.+||.||||+|+||+|+..+. ....+.+|.++|||++|.+|+.++.
T Consensus 24 ~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~e 103 (113)
T 4emk_C 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSE 103 (113)
T ss_dssp --------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC---
T ss_pred hHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccc
Confidence 467899999999999999999999999999999999999999986431 1135789999999999999998875
Q ss_pred Ccchhhhh
Q 034490 76 GVDVDLLH 83 (93)
Q Consensus 76 ~~d~~~~~ 83 (93)
.++.++.+
T Consensus 104 e~~~p~~~ 111 (113)
T 4emk_C 104 EIPNPFVQ 111 (113)
T ss_dssp --------
T ss_pred cccCcccc
Confidence 36666654
No 22
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.86 E-value=4e-22 Score=129.40 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=64.8
Q ss_pred CchhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCC---------CCC----ceEeeeeEEEecCeE
Q 034490 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQD---------KYP----HMLSVRNCFIRGSVV 67 (93)
Q Consensus 1 m~p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~---------~~~----~~~~~~~~~IRG~~I 67 (93)
+.|+.||+.++|++|+|+|+||++|+|+|.+||.||||+|+||+|+..+ +.. ..+.+|.+||||++|
T Consensus 27 ~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV 106 (121)
T 2fwk_A 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV 106 (121)
T ss_dssp CCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred cCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence 4799999999999999999999999999999999999999999997632 110 036799999999999
Q ss_pred EEEEcCCC
Q 034490 68 RYVQLPPD 75 (93)
Q Consensus 68 ~~I~~~~~ 75 (93)
.+|...++
T Consensus 107 v~I~~~~~ 114 (121)
T 2fwk_A 107 AMLVPGGD 114 (121)
T ss_dssp EEEESSSC
T ss_pred EEEEecCC
Confidence 99997763
No 23
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.85 E-value=3.7e-21 Score=124.33 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=63.2
Q ss_pred CchhHHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCC------C------CceEeeeeEEEecCe
Q 034490 1 MLFFSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDK------Y------PHMLSVRNCFIRGSV 66 (93)
Q Consensus 1 m~p~~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~------~------~~~~~~~~~~IRG~~ 66 (93)
+.|+.+|+.++ |++|.|+|+||+.|.|+|.+||.|||++|+||+++.... . ...+.+|.+||||++
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 46999999999 599999999999999999999999999999999975211 0 013569999999999
Q ss_pred EEEEEcCCC
Q 034490 67 VRYVQLPPD 75 (93)
Q Consensus 67 I~~I~~~~~ 75 (93)
|.+|+.++.
T Consensus 106 Vv~I~~~~~ 114 (118)
T 1b34_B 106 VIVVLRNPL 114 (118)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCch
Confidence 999998875
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.80 E-value=1.8e-19 Score=127.46 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=63.8
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcC----C----CCCceEeeeeEEEecCeEEEEEcCC
Q 034490 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ----D----KYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 3 p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~----~----~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
+-.+|++++||+|+|+|+||++|+|+|.+||.||||+|+||+|+.. + ...+.+.++.+||||+||.+|++++
T Consensus 5 k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred chHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 4678999999999999999999999999999999999999999742 1 0113588999999999999999876
Q ss_pred C
Q 034490 75 D 75 (93)
Q Consensus 75 ~ 75 (93)
.
T Consensus 85 p 85 (231)
T 3pgw_B 85 P 85 (231)
T ss_pred C
Confidence 4
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.15 E-value=3.6e-10 Score=69.17 Aligned_cols=63 Identities=25% Similarity=0.227 Sum_probs=54.4
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEec-cccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 5 SYFKDLVGREVTVELKNDLAIRGTLHSVD-QYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 5 ~~L~~~~gk~V~V~L~~g~~~~G~L~~~D-~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
..|++++||+|.|.|.||++|+|.|.+|| ...|++|.|+ ..+. ....++|.|..|..|.+.++
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~~~~-----~~~~~iI~G~aI~eI~v~~~ 73 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---LEDG-----SMSVTGIMGHAVQTVETMNE 73 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---CTTS-----CEEEEEECGGGEEEEEEEEC
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---ccCC-----eEEEEEEecceEEEEEEecc
Confidence 47899999999999999999999999999 8999999999 2222 24689999999999976653
No 26
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.17 E-value=0.00048 Score=40.70 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=40.6
Q ss_pred HHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 5 SYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 5 ~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
.||+.+. +.+|+|.|.||..++|++.+||.|+=+.-.+ . ..+|-=..|.+|....
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~--------~-------~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT--------V-------SQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS--------S-------EEEEEGGGEEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC--------c-------eEEEEeeeEEEEeEcc
Confidence 4666666 8899999999999999999999998655421 1 2345556777776443
No 27
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.14 E-value=0.0078 Score=36.56 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=52.5
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEecc-ccceEEeeEEEEcCCCC-------CceEeeeeEEEecCeEEEEEcCC
Q 034490 9 DLVGREVTVELKNDLAIRGTLHSVDQ-YLNIKLENTRVVDQDKY-------PHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 9 ~~~gk~V~V~L~~g~~~~G~L~~~D~-~mNl~L~~~~~~~~~~~-------~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
.++|+++.+.-+.+..|+|+|..+|. .--+.|+||..+-.++. +...-++.+.-||+.|.-+++-+
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 46899999999999999999999995 56899999998642210 11234578999999999998765
No 28
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.12 E-value=0.00098 Score=39.66 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEe
Q 034490 5 SYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLE 41 (93)
Q Consensus 5 ~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~ 41 (93)
.||+.+. ..+|.|.|.||..++|.+.+||.|+=+.-.
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~ 48 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS 48 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE
Confidence 4677776 899999999999999999999999866643
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.07 E-value=0.00086 Score=40.02 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=31.1
Q ss_pred HHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 034490 5 SYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKL 40 (93)
Q Consensus 5 ~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L 40 (93)
.||+.+. +.+|+|-|.||..++|.+.+||.|+=+.-
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 4666666 89999999999999999999999986654
No 30
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.0088 Score=36.11 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=51.8
Q ss_pred hhHHHhhcCCCEEEEEEcCCcEEEEEEEEecc-ccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcC
Q 034490 3 FFSYFKDLVGREVTVELKNDLAIRGTLHSVDQ-YLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73 (93)
Q Consensus 3 p~~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~-~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~ 73 (93)
.+.+|.++.|++|.+.|..+.++.|+..++|. ..|+..++-. +.- --+++..+|++-|..+++.
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-TPi------Gv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-TPI------GVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-CTT------CCEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-CCc------ccchhhhhhcCCEEEEEec
Confidence 36788999999999999999999999999995 5587776643 111 1257899999999999874
No 31
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.94 E-value=0.0012 Score=39.67 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=30.6
Q ss_pred HHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 034490 5 SYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKL 40 (93)
Q Consensus 5 ~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L 40 (93)
.||+.+. +.+|+|-|.||..++|.+.+||.|+=+.-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 4566555 88999999999999999999999986653
No 32
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.86 E-value=0.0013 Score=39.26 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=40.1
Q ss_pred HHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCCC
Q 034490 5 SYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 75 (93)
Q Consensus 5 ~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~~ 75 (93)
.||+.+. ..+|.|.|.||..++|.+.+||+|+=+. + .++ ..+|-=..|.+|.....
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~------~g~--------~qLIYKhAISTI~P~~~ 68 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R------NTV--------TQMVYKHAISTVVPARA 68 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E------SSS--------EEEEEGGGEEEEEESSC
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E------CCc--------eEEEEeeeEEEEeecCc
Confidence 3555554 6679999999999999999999998665 2 111 12456667888875543
No 33
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.78 E-value=0.0031 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccccceEEee
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLEN 42 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~ 42 (93)
.+.+|+|-|.||..++|.+.+||.|+=+.-.+
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 38899999999999999999999999766543
No 34
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.73 E-value=0.0024 Score=41.12 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=42.0
Q ss_pred HhhcCCCEEEEEEcCCcEEEEEEEEeccccceEE--eeEEEEcCCCCCceEeeeeEEEecCeEEEEEcCC
Q 034490 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKL--ENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 7 L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L--~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
+..++|..|.|+|+||..++|++..+|. -+|+| ++|... ..-|+.+.|.-+.+-+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s------------~~~I~asdI~DLkVl~ 63 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDS------------TKSIVTKDIKDLRILP 63 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTE------------EEEEEGGGEEEEEECC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccccc------------cceeecccccceeeee
Confidence 3567899999999999999999999984 45666 888321 1268888887776554
No 35
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.55 E-value=0.0023 Score=40.07 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=30.3
Q ss_pred HHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 034490 5 SYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKL 40 (93)
Q Consensus 5 ~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L 40 (93)
.||+.+. ..+|.|.|.||..++|++.+||.|+=++-
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 4666666 45999999999999999999999986654
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.51 E-value=0.0094 Score=36.67 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=52.2
Q ss_pred HhhcCCCEEEEEEcCCcEEEEEEEEecc-ccceEEeeEEEEcCCCC-------CceEeeeeEEEecCeEEEEEcCC
Q 034490 7 FKDLVGREVTVELKNDLAIRGTLHSVDQ-YLNIKLENTRVVDQDKY-------PHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 7 L~~~~gk~V~V~L~~g~~~~G~L~~~D~-~mNl~L~~~~~~~~~~~-------~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
-..++|+++.+.-+.+..|.|+|..+|. .--+.|+||..+-.++. +...-++.+.-||+.|.-+.+-+
T Consensus 14 ~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 14 GTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp --CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred cCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 4578999999999999999999999994 66889999987632110 11234578999999999998754
No 37
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=96.03 E-value=0.013 Score=34.17 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=31.0
Q ss_pred hHHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 034490 4 FSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKL 40 (93)
Q Consensus 4 ~~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L 40 (93)
+..||.++ ..+|.|+|.+|..++|.+.-+|+++=+.-
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 45666666 78999999999999999999999875543
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.02 E-value=0.016 Score=34.83 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=47.2
Q ss_pred hhcCCCEEEEEEcCCc-EEEEEEEEeccc-cceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcC
Q 034490 8 KDLVGREVTVELKNDL-AIRGTLHSVDQY-LNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73 (93)
Q Consensus 8 ~~~~gk~V~V~L~~g~-~~~G~L~~~D~~-mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~ 73 (93)
.+++|+.|.+..+++. .|+|.|..+|.. -+|.|.++. .++- + ....++.+++.-|.-+.+.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f--~NG~-~--~~s~eVtls~~DI~~L~ii 67 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF--HNGV-K--CLVPEVTFRAGDITELKIL 67 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE--ETTE-E--CSSSEEEEEGGGCSEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh--hCCC-C--CCCcEEEEEecChhheEEE
Confidence 4689999999999999 999999999965 589999994 2221 1 2335788999877666543
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.59 E-value=0.021 Score=33.43 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=31.0
Q ss_pred hHHHhhcC--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 034490 4 FSYFKDLV--GREVTVELKNDLAIRGTLHSVDQYLNIKL 40 (93)
Q Consensus 4 ~~~L~~~~--gk~V~V~L~~g~~~~G~L~~~D~~mNl~L 40 (93)
++.||.++ ..+|.|+|.+|..++|++.-.|+++=..-
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~ 51 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIA 51 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEE
Confidence 46677776 77899999999999999999999875444
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.77 E-value=0.15 Score=29.15 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=43.5
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEc
Q 034490 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQL 72 (93)
Q Consensus 5 ~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~ 72 (93)
.-|..-.|++|-+..-....++|+|..||.-. +.|+|++....++ -..+.++=+.|.+|-+
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~GNk------~k~liv~idDinWimL 69 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIGNR------GKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTEEE------EEEEEEEGGGEEEEEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhccc------cceeEEEeccceEEEe
Confidence 45777889999999999999999999999864 7789999875432 2355677667766654
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=90.89 E-value=0.44 Score=33.68 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.6
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..|++|.|.+.++..++|+..++|+.-.|.++..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 4699999999889999999999999999998753
No 42
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=90.08 E-value=0.29 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHhhcCCCEEEEEEc----CCcEEEEEEEEeccc
Q 034490 6 YFKDLVGREVTVELK----NDLAIRGTLHSVDQY 35 (93)
Q Consensus 6 ~L~~~~gk~V~V~L~----~g~~~~G~L~~~D~~ 35 (93)
-+..++|+.|.|+|+ +.+.++|+|.++|..
T Consensus 98 df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 98 AVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 356789999999994 459999999999975
No 43
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=87.29 E-value=3.6 Score=25.24 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=46.3
Q ss_pred hhcCCCEEEEEEcCCc-EEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEcC
Q 034490 8 KDLVGREVTVELKNDL-AIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP 73 (93)
Q Consensus 8 ~~~~gk~V~V~L~~g~-~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~~ 73 (93)
++.+|+.|.|.-.+.- .|+|.+..+|. -++.|.++....- +-.....++.++..-|..+.+-
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrNGi---plk~~~~EVtLsa~DI~~L~II 70 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRNGV---PLRKQNAEVVLKCTDIRSIDLI 70 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEETTE---ECSCSSSCEEEETTTEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhcCc---CcCCCCceEEEEecchhheeee
Confidence 3689999999999996 99999999995 4499988876321 0002346788888888777653
No 44
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=84.75 E-value=2.6 Score=30.12 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=34.8
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEec
Q 034490 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64 (93)
Q Consensus 9 ~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG 64 (93)
...|++|.|...+ ..++|+..++|+.-.|.+...... +....|++.+|+
T Consensus 270 ~~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~~g~------~~~~~Gev~~r~ 318 (321)
T 1bia_A 270 NFINRPVKLIIGD-KEIFGISRGIDKQGALLLEQDGII------KPWMGGEISLRS 318 (321)
T ss_dssp TTTTSEEEEEETT-EEEEEEEEEECTTSCEEEEETTEE------EEESSCEEEEC-
T ss_pred hhcCCEEEEEECC-cEEEEEEEEECCCCeEEEEECCCE------EEEEeeeEEEec
Confidence 3469999998765 579999999999999998643211 123346777764
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=83.88 E-value=1 Score=30.98 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=33.9
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEeeEEEEcCCCCCceEeeeeEEEec
Q 034490 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRG 64 (93)
Q Consensus 9 ~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG 64 (93)
...|++|.+...++ ++|+..++|+.-.|.+...... +....|++.+|+
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G~------~~~~~Gev~~r~ 232 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEGI------KEILSGEFSLRR 232 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEECTTSCEEEEETTEE------EEECSCCEEEC-
T ss_pred cccCCEEEEEECCe--EEEEEEEECCCCeEEEEECCCe------EEEEEeEEEEec
Confidence 34699999987665 9999999999999999643211 113346777764
No 46
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=81.62 E-value=1.5 Score=26.56 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.9
Q ss_pred CCEEEEEEcCCcEEEEEEE
Q 034490 12 GREVTVELKNDLAIRGTLH 30 (93)
Q Consensus 12 gk~V~V~L~~g~~~~G~L~ 30 (93)
..+|.++|.||+.+.||+.
T Consensus 28 q~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp TCEEEEEETTSCEEEEEES
T ss_pred eeEEEEEEcCCCeEeeeec
Confidence 4689999999999999974
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=81.49 E-value=3.1 Score=28.55 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.5
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccccceEEee
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN 42 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~ 42 (93)
..|++|.|...++..++|+..++|+.-.|. .+
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 479999999988877999999999999998 53
No 48
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=78.72 E-value=3.8 Score=22.77 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQY 35 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~ 35 (93)
.|..|.+.-.||+.|-|++..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4889999999999999999999865
No 49
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=74.14 E-value=2.9 Score=28.80 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccccceEEee
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQYLNIKLEN 42 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~ 42 (93)
.|++|.|...++ ++|+..++|+.-.|.+.+
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998776 999999999999999964
No 50
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=69.12 E-value=7.3 Score=27.99 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.9
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccccceEEee
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN 42 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~ 42 (93)
..|++|.|... +..++|+..++|+.-.|.+.+
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 56999999864 567999999999999999864
No 51
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=68.53 E-value=2.4 Score=25.23 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHhhcCCCEEEEEEcCCcEEEEEEE
Q 034490 6 YFKDLVGREVTVELKNDLAIRGTLH 30 (93)
Q Consensus 6 ~L~~~~gk~V~V~L~~g~~~~G~L~ 30 (93)
.+..+.+.+|.|+|+||.++.|+..
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESSC
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEEE
Confidence 3556779999999999999998644
No 52
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=67.16 E-value=19 Score=21.98 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=41.9
Q ss_pred EEEEcCCcEEEEEEEEeccccceEEeeEEEEcC---C-C------C---CceEeeeeEEEecCeEEEEEcCC
Q 034490 16 TVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ---D-K------Y---PHMLSVRNCFIRGSVVRYVQLPP 74 (93)
Q Consensus 16 ~V~L~~g~~~~G~L~~~D~~mNl~L~~~~~~~~---~-~------~---~~~~~~~~~~IRG~~I~~I~~~~ 74 (93)
.|+|++|.++.|.+..-|.. +.++|...... + + + .+...-..+.||-++|.++.-+.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 47999999999999977764 88899887532 1 0 0 01234578999999999998664
No 53
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=67.02 E-value=10 Score=21.55 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQY 35 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~ 35 (93)
+|..|+-.-.||..|.|++..++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 4888999999999999999999964
No 54
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=66.06 E-value=10 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.9
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEEeccccceEEee
Q 034490 9 DLVGREVTVELKNDLAIRGTLHSVDQYLNIKLEN 42 (93)
Q Consensus 9 ~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~ 42 (93)
...|++|.| ++ ++|+..++|..-.|.+..
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 356999999 45 999999999999999864
No 55
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=65.37 E-value=12 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.2
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEec
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVD 33 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D 33 (93)
-+|.-|.++-.||..|-|+++...
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecC
Confidence 358999999999999999995433
No 56
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=62.53 E-value=12 Score=25.83 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=28.0
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEecccc
Q 034490 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQYL 36 (93)
Q Consensus 5 ~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~~m 36 (93)
.+=++|+||.+.-++.+|..+.|.|++...|+
T Consensus 18 ~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 18 PLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 44467999999999999999999999998886
No 57
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.83 E-value=15 Score=20.85 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQY 35 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~ 35 (93)
.|.-|..+=.||..|-|++..+|..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 4889999999999999999999954
No 58
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=59.44 E-value=4.9 Score=23.58 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.2
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEeccc
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVDQY 35 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D~~ 35 (93)
-.|.-|.+.-+||+.|-|++..+|..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccC
Confidence 35889999999999999999999864
No 59
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=56.27 E-value=16 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.291 Sum_probs=25.4
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEecc--ccceEEee
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVDQ--YLNIKLEN 42 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D~--~mNl~L~~ 42 (93)
.+|.+|..+-+||+.|+|++.+... |-.+..+|
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~D 41 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDD 41 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETT
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCC
Confidence 3699999999999999999998763 33444433
No 60
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=56.07 E-value=19 Score=21.55 Aligned_cols=29 Identities=28% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHhhcCCCEEEEEEcCCc----EEEEEEEEec
Q 034490 5 SYFKDLVGREVTVELKNDL----AIRGTLHSVD 33 (93)
Q Consensus 5 ~~L~~~~gk~V~V~L~~g~----~~~G~L~~~D 33 (93)
.-|.+.+|++|.+....|+ +-.|+|...=
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~etY 50 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVY 50 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEEC
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEec
Confidence 4578899999999999994 6789998754
No 61
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.82 E-value=17 Score=20.35 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQY 35 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~ 35 (93)
+|.-|..+=+||..|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 4888999999999999999999964
No 62
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=43.48 E-value=17 Score=27.43 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=24.6
Q ss_pred CchhHHHhhcC---CCEEEEEEcCC---cEEEEEEEE
Q 034490 1 MLFFSYFKDLV---GREVTVELKND---LAIRGTLHS 31 (93)
Q Consensus 1 m~p~~~L~~~~---gk~V~V~L~~g---~~~~G~L~~ 31 (93)
|--..||..+- |.+|+|+.++| .+|+|+|+-
T Consensus 1 ~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~ 37 (438)
T 1zq1_A 1 MRVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMP 37 (438)
T ss_dssp -CHHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECC
T ss_pred CchHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEec
Confidence 33456777665 99999999998 899999993
No 63
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=42.45 E-value=40 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.5
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.+|+.+.+++.+.|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999998876555
No 64
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=42.02 E-value=40 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=27.7
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeEE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENTR 44 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~ 44 (93)
..+.|.+.+|+.+.+++.+.|...+|-+=...
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 47899999999999999999999998765543
No 65
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=40.33 E-value=24 Score=25.50 Aligned_cols=24 Identities=8% Similarity=-0.029 Sum_probs=20.2
Q ss_pred hhcCCCEEEEEEcCCcEEEEEEEE
Q 034490 8 KDLVGREVTVELKNDLAIRGTLHS 31 (93)
Q Consensus 8 ~~~~gk~V~V~L~~g~~~~G~L~~ 31 (93)
+.+.|++|+|..++|..+.|++-.
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC-
T ss_pred cccCCCEEEEEcCCCCEEEEEEeC
Confidence 457799999999999999998854
No 66
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=36.14 E-value=25 Score=23.94 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=17.2
Q ss_pred hcCCCEEEEEEcCCcEEEEEEEE
Q 034490 9 DLVGREVTVELKNDLAIRGTLHS 31 (93)
Q Consensus 9 ~~~gk~V~V~L~~g~~~~G~L~~ 31 (93)
...|..|+|.+.+|++++|++.+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 45678888888888888887654
No 67
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=35.96 E-value=50 Score=23.59 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=26.7
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.+|+.+.+++.+.|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4788999999999999999999988876544
No 68
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=34.16 E-value=96 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred EEeccccceEEeeEEEEcCCCCCceEeeeeEEEecCeEEEEEc
Q 034490 30 HSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQL 72 (93)
Q Consensus 30 ~~~D~~mNl~L~~~~~~~~~~~~~~~~~~~~~IRG~~I~~I~~ 72 (93)
+++|..|.+++.++.....+... ...-+.+.|+|..|..|.-
T Consensus 1 ~~~~~~~~~li~n~~v~~~~~~~-~~~~~~v~I~~g~I~~vg~ 42 (418)
T 2qs8_A 1 MSLDVDSKTLIHAGKLIDGKSDQ-VQSRISIVIDGNIISDIKK 42 (418)
T ss_dssp ------CCEEEEEEEECCSSCSS-CEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCccEEEEeeEEEeCCCCc-cccCcEEEEECCEEEEEeC
Confidence 36788889999999887654421 1233689999999999963
No 69
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=33.74 E-value=50 Score=22.42 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=26.3
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
.++.|.+.+|+.+.+.+...|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4688999999999999999999888876544
No 70
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=31.19 E-value=76 Score=21.03 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEeeEE
Q 034490 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENTR 44 (93)
Q Consensus 12 gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~~ 44 (93)
...+.|.+.+|..+.+.+..+|...+|-|=...
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 357899999999999999999998888764443
No 71
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=30.73 E-value=78 Score=20.94 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=26.6
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.+|..+.+.+..+|...+|-|=..
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999888766443
No 72
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=30.48 E-value=52 Score=24.46 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=27.1
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.+|+.+.+++.+.|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4689999999999999999999998877554
No 73
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=29.56 E-value=70 Score=23.69 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=22.3
Q ss_pred HhhcCCCEEEEEEcC----------C-cEEEEEEEEecc
Q 034490 7 FKDLVGREVTVELKN----------D-LAIRGTLHSVDQ 34 (93)
Q Consensus 7 L~~~~gk~V~V~L~~----------g-~~~~G~L~~~D~ 34 (93)
+..++|+++.|.+.. . +.+.|++.++..
T Consensus 58 l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 58 PESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp GGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred HHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 467899999999952 2 789999988864
No 74
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=29.15 E-value=80 Score=22.10 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.6
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.+|..+.+++.++|...+|-|=..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 5789999999999999999999888876544
No 75
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=28.92 E-value=67 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=16.4
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEec
Q 034490 5 SYFKDLVGREVTVELKNDLAIRGTLHSVD 33 (93)
Q Consensus 5 ~~L~~~~gk~V~V~L~~g~~~~G~L~~~D 33 (93)
++|..++||+|++. |++.+++
T Consensus 15 s~L~~fvgk~Vriv--------GkV~~~~ 35 (121)
T 3kdf_A 15 GMLAQFIDKPVCFV--------GRLEKIH 35 (121)
T ss_dssp GGGGGGTTCEEEEE--------EEEEEEC
T ss_pred HHHHhhCCCeEEEE--------EEEEEEc
Confidence 68999999999876 5555554
No 76
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=27.84 E-value=46 Score=23.76 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=18.1
Q ss_pred hcCCCEEEEE-EcCCcEEEEEEEE
Q 034490 9 DLVGREVTVE-LKNDLAIRGTLHS 31 (93)
Q Consensus 9 ~~~gk~V~V~-L~~g~~~~G~L~~ 31 (93)
...|..|+|+ +.+|++++|++.+
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEec
Confidence 4679999999 9999999998763
No 77
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=27.27 E-value=26 Score=19.96 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=10.9
Q ss_pred EEEEEEEEecccc
Q 034490 24 AIRGTLHSVDQYL 36 (93)
Q Consensus 24 ~~~G~L~~~D~~m 36 (93)
-++|+|..||..|
T Consensus 3 A~kGvLi~CDpa~ 15 (71)
T 3dgp_B 3 ARKGALVQCDPSI 15 (71)
T ss_dssp EEEEEEEECCHHH
T ss_pred ceeEEEEEcCHHH
Confidence 4689999999866
No 78
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=26.68 E-value=87 Score=21.74 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=26.7
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.++..+.+++..+|...+|-|=..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4899999999999999999999888876444
No 79
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=26.57 E-value=92 Score=21.64 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=26.5
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.+|..+.+.+..+|...+|-|=..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 4688999999999999999999888877544
No 80
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=25.71 E-value=97 Score=18.76 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=17.5
Q ss_pred HHHhhcCCCEEEEEEcCCcEEEEEEEEecc
Q 034490 5 SYFKDLVGREVTVELKNDLAIRGTLHSVDQ 34 (93)
Q Consensus 5 ~~L~~~~gk~V~V~L~~g~~~~G~L~~~D~ 34 (93)
+.|.+++|++|++. |++.++|.
T Consensus 11 ~~L~~~~g~~Vriv--------GkV~~~~g 32 (114)
T 4gop_A 11 SMLGQYVGQTVRIV--------GKVHKVTG 32 (114)
T ss_dssp TTGGGGTTSEEEEE--------EEEEEEET
T ss_pred HHHHhhCCCeEEEE--------EEEeeeCC
Confidence 57899999999876 66777775
No 81
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=25.12 E-value=1.3e+02 Score=19.00 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHhhcCCCEEEEE
Q 034490 5 SYFKDLVGREVTVE 18 (93)
Q Consensus 5 ~~L~~~~gk~V~V~ 18 (93)
++|.+++||+|++.
T Consensus 36 s~L~~fvGk~VriV 49 (142)
T 2pi2_E 36 GMLAQFIDKPVCFV 49 (142)
T ss_dssp GGGGGSTTCEEEEE
T ss_pred HHHHhhCCCEEEEE
Confidence 67899999999886
No 82
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.66 E-value=1e+02 Score=17.35 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=21.4
Q ss_pred CCCEEEEEEcCCcEEEEEEEEeccc
Q 034490 11 VGREVTVELKNDLAIRGTLHSVDQY 35 (93)
Q Consensus 11 ~gk~V~V~L~~g~~~~G~L~~~D~~ 35 (93)
+|..+.-.-.||..|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 4778887778999999999999864
No 83
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=24.30 E-value=1.3e+02 Score=20.91 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 12 gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
...+.|.+.+|..+.+.+..+|...+|-|=..
T Consensus 69 ~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 69 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp TSEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 35789999999999999999999888876444
No 84
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=24.29 E-value=71 Score=18.42 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.5
Q ss_pred CCEEEEEEcCCcEEEEEEEEecc
Q 034490 12 GREVTVELKNDLAIRGTLHSVDQ 34 (93)
Q Consensus 12 gk~V~V~L~~g~~~~G~L~~~D~ 34 (93)
+..|.|++.++..+.|.+..|..
T Consensus 74 d~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 74 QYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp SEEEEEEEETTEEEEEEEECCCT
T ss_pred CEEEEEEEeCCEEEEEEcccccc
Confidence 45789999999999999987754
No 85
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=24.01 E-value=1.1e+02 Score=21.57 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=26.7
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEeeE
Q 034490 13 REVTVELKNDLAIRGTLHSVDQYLNIKLENT 43 (93)
Q Consensus 13 k~V~V~L~~g~~~~G~L~~~D~~mNl~L~~~ 43 (93)
..+.|.+.++..+.+.+..+|...+|-|=..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 5789999999999999999999888876444
No 86
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.73 E-value=58 Score=24.55 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=26.3
Q ss_pred HHHhhcC---CCEEEEEEcCCcEEEEEEEE-ec----cccceEEeeE
Q 034490 5 SYFKDLV---GREVTVELKNDLAIRGTLHS-VD----QYLNIKLENT 43 (93)
Q Consensus 5 ~~L~~~~---gk~V~V~L~~g~~~~G~L~~-~D----~~mNl~L~~~ 43 (93)
.+|..+- |.+|+|+.++ .+|+|+|+- .+ ++.=|.|+|-
T Consensus 9 ~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~~g 54 (435)
T 2d6f_A 9 KFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLENG 54 (435)
T ss_dssp HHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECTTS
T ss_pred HHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEccCc
Confidence 4566555 9999999876 999999993 33 4444444443
No 87
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=22.23 E-value=1.2e+02 Score=18.88 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.1
Q ss_pred cCCCEEEEEEcCCcEEEEEEEEec
Q 034490 10 LVGREVTVELKNDLAIRGTLHSVD 33 (93)
Q Consensus 10 ~~gk~V~V~L~~g~~~~G~L~~~D 33 (93)
..|..|.|.-.||..|.|+..+.-
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEeEEEeeee
Confidence 358999999999999999998863
No 88
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=21.86 E-value=1.6e+02 Score=18.62 Aligned_cols=29 Identities=14% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEee
Q 034490 12 GREVTVELKNDLAIRGTLHSVDQYLNIKLEN 42 (93)
Q Consensus 12 gk~V~V~L~~g~~~~G~L~~~D~~mNl~L~~ 42 (93)
...+.|.+ +|+.+..++. .|...+|-|=.
T Consensus 42 ~~~i~V~~-dg~~~~a~vv-~d~~~DlAlLk 70 (163)
T 2w5e_A 42 NTFVNVCY-EGLMYEAKVR-YMPEKDIAFIT 70 (163)
T ss_dssp CSEEEEEE-TTEEEEEEEE-ECCSSSEEEEE
T ss_pred CceEEEEE-CCEEEEEEEE-EECCCCEEEEE
Confidence 35788888 9999999999 88887776543
No 89
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=20.52 E-value=74 Score=18.81 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=25.8
Q ss_pred HhhcCCCEEEEEEcCCcEEEEEEEEeccccceE
Q 034490 7 FKDLVGREVTVELKNDLAIRGTLHSVDQYLNIK 39 (93)
Q Consensus 7 L~~~~gk~V~V~L~~g~~~~G~L~~~D~~mNl~ 39 (93)
-+-++||+|.-..++|+.+-|++..--..-.++
T Consensus 35 a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvV 67 (87)
T 3j21_c 35 ASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAV 67 (87)
T ss_dssp HGGGTTCEEEECCSSSCCEEEEEEEECCSSSCE
T ss_pred HHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeE
Confidence 356889999999999999999988766554444
No 90
>3fso_A Integrin beta-4, GP150; immunoglobulin fold, cell adhesion, alternative splicing, disease mutation, epidermolysis bullosa, glycoprotein, membrane; 1.41A {Homo sapiens} SCOP: b.1.27.0 PDB: 3fq4_A 3h6a_A
Probab=20.25 E-value=61 Score=19.68 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=18.3
Q ss_pred CCEEEEEEcCCcEEEEEEEE-eccccceEEeeEE
Q 034490 12 GREVTVELKNDLAIRGTLHS-VDQYLNIKLENTR 44 (93)
Q Consensus 12 gk~V~V~L~~g~~~~G~L~~-~D~~mNl~L~~~~ 44 (93)
-|.+.|.+.++..+.+.+.+ =|..+.+.|++..
T Consensus 70 ~k~i~V~I~dD~~~E~~~e~~~~E~F~v~L~~p~ 103 (123)
T 3fso_A 70 WKELQVKLLELQEVDSLLRGRQVRRFHVQLSNPK 103 (123)
T ss_dssp EEEEEEEBCCC---------CCEEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCchhccccCCCeEEEEEEeCCC
Confidence 36788888888777775554 3778888888775
Done!