BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034491
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin
          And Group-1 Pollen Allergen From Maize
          Length = 245

 Score = 28.9 bits (63), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 32 FIRSRAAHY--PNSDEQGTDSGACGFGSFGATINGGDVSAAS-GLYRNGLGCGACYQVH 87
          ++ +RA  Y  PN      + GACG  +       G  +  +  ++++G GCG+CY+V 
Sbjct: 19 WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77


>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
 pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
 pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
           Inhibitor
 pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh And
           Inhibitor
          Length = 376

 Score = 25.4 bits (54), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 52  ACGFGS-FGATINGGDVSAASGLYRNGLGC 80
            CGF S +GA IN   V+  S     GLGC
Sbjct: 177 GCGFSSGYGAAINTAKVTPGSTCAVFGLGC 206


>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
           Complex With Nadh
 pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
           Complex With Nadh
          Length = 376

 Score = 25.4 bits (54), Expect = 8.2,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 52  ACGFGS-FGATINGGDVSAASGLYRNGLGC 80
            CGF S +GA IN   V+  S     GLGC
Sbjct: 177 GCGFSSGYGAAINTAKVTPGSTCAVFGLGC 206


>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass
          Pollen Allergen
 pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass
          Pollen Allergen
          Length = 241

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 11/71 (15%)

Query: 30 DCFIRSRAAHY--PNSDEQGTDSGACGFGSFGATINGGDVSAASG-----LYRNGLGCGA 82
          D ++ +++  Y  P       + GACG+      ++    S  +G     ++++G GCG+
Sbjct: 17 DKWLDAKSTWYGKPTGAGPKDNGGACGY----KDVDKPPFSGMTGCGNTPIFKSGRGCGS 72

Query: 83 CYQVHISNQNA 93
          C+++  +   A
Sbjct: 73 CFEIKCTKPEA 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,433,657
Number of Sequences: 62578
Number of extensions: 86413
Number of successful extensions: 164
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)