Query 034491
Match_columns 93
No_of_seqs 100 out of 538
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03023 Expansin-like B1; Pro 99.9 9.6E-28 2.1E-32 183.5 7.6 66 26-92 20-85 (247)
2 PLN00193 expansin-A; Provision 99.9 5E-24 1.1E-28 163.8 9.2 62 28-89 26-88 (256)
3 PLN00050 expansin A; Provision 99.9 1.2E-23 2.7E-28 160.9 6.9 64 28-91 21-85 (247)
4 PLN03024 Putative EG45-like do 99.7 2.2E-16 4.7E-21 110.6 7.0 50 33-91 22-72 (125)
5 PF03330 DPBB_1: Rare lipoprot 97.5 3.7E-05 7.9E-10 48.5 0.9 22 67-88 1-23 (78)
6 PF07249 Cerato-platanin: Cera 80.7 2.9 6.3E-05 29.2 3.8 23 65-88 43-67 (119)
7 PF02015 Glyco_hydro_45: Glyco 22.8 31 0.00067 26.3 0.2 24 67-90 70-94 (201)
8 PF15240 Pro-rich: Proline-ric 20.4 61 0.0013 24.3 1.4 11 24-34 15-25 (179)
9 PF00967 Barwin: Barwin family 19.9 60 0.0013 22.9 1.2 12 76-87 56-67 (119)
10 PF15330 SIT: SHP2-interacting 19.5 1E+02 0.0022 20.9 2.2 58 8-66 2-60 (107)
No 1
>PLN03023 Expansin-like B1; Provisional
Probab=99.94 E-value=9.6e-28 Score=183.54 Aligned_cols=66 Identities=53% Similarity=0.947 Sum_probs=60.8
Q ss_pred ccCCCCceeeeEEEcCCCCCCCCCCCcCCCCCCCCCCCCcceeeecccCCCCCCCcceEEEEeCCCC
Q 034491 26 ETCPDCFIRSRAAHYPNSDEQGTDSGACGFGSFGATINGGDVSAASGLYRNGLGCGACYQVHISNQN 92 (93)
Q Consensus 26 ~~~~~~w~~g~AT~Yg~~~~~g~~gGaCGyg~~~~~~~g~~vAA~S~lf~~G~~CGaCyeVrC~~~~ 92 (93)
..|+ +|+++||||||+||+.|+++|||||+++..+.+|.++||+|+|||||++||+||||||++++
T Consensus 20 ~~~~-~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s~Lf~~G~~CGaCy~irC~~~~ 85 (247)
T PLN03023 20 CKSQ-DFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSRLYRNGTGCGACYQVRCKAPN 85 (247)
T ss_pred hhcC-CcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeehhhhcCCchhcccEEeecCCCC
Confidence 3455 49999999999999999999999999999899999999999999999999999999998754
No 2
>PLN00193 expansin-A; Provisional
Probab=99.90 E-value=5e-24 Score=163.79 Aligned_cols=62 Identities=35% Similarity=0.747 Sum_probs=58.8
Q ss_pred CCCCceeeeEEEcCCCCCCCCCCCcCCCCCCCCCCCCcceeeec-ccCCCCCCCcceEEEEeC
Q 034491 28 CPDCFIRSRAAHYPNSDEQGTDSGACGFGSFGATINGGDVSAAS-GLYRNGLGCGACYQVHIS 89 (93)
Q Consensus 28 ~~~~w~~g~AT~Yg~~~~~g~~gGaCGyg~~~~~~~g~~vAA~S-~lf~~G~~CGaCyeVrC~ 89 (93)
-+.+|++++|||||++|+.|+++|||||+++..+++|+++||+| +|||+|++||+||||||.
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~ 88 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCD 88 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECC
Confidence 45579999999999999999999999999999899999999999 999999999999999995
No 3
>PLN00050 expansin A; Provisional
Probab=99.89 E-value=1.2e-23 Score=160.88 Aligned_cols=64 Identities=34% Similarity=0.710 Sum_probs=60.0
Q ss_pred CCCCceeeeEEEcCCCCCCCCCCCcCCCCCCCCCCCCcceeeec-ccCCCCCCCcceEEEEeCCC
Q 034491 28 CPDCFIRSRAAHYPNSDEQGTDSGACGFGSFGATINGGDVSAAS-GLYRNGLGCGACYQVHISNQ 91 (93)
Q Consensus 28 ~~~~w~~g~AT~Yg~~~~~g~~gGaCGyg~~~~~~~g~~vAA~S-~lf~~G~~CGaCyeVrC~~~ 91 (93)
...+|.++||||||++|+.|+++|||||+++..+++|.++||+| +|||+|++||+||||||+++
T Consensus 21 ~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~ 85 (247)
T PLN00050 21 YGSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND 85 (247)
T ss_pred cCCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCC
Confidence 35679999999999999999999999999999899999999999 99999999999999999664
No 4
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.66 E-value=2.2e-16 Score=110.56 Aligned_cols=50 Identities=30% Similarity=0.490 Sum_probs=42.2
Q ss_pred eeeeEEEcCCCCCCCCCCCcCCCCCCCCCCCCcceeeec-ccCCCCCCCcceEEEEeCCC
Q 034491 33 IRSRAAHYPNSDEQGTDSGACGFGSFGATINGGDVSAAS-GLYRNGLGCGACYQVHISNQ 91 (93)
Q Consensus 33 ~~g~AT~Yg~~~~~g~~gGaCGyg~~~~~~~g~~vAA~S-~lf~~G~~CGaCyeVrC~~~ 91 (93)
.+|+||||+++ ..|+| |++ .++|.++||+| +||+||..||+||||||.++
T Consensus 22 ~~G~AT~Y~~~-----~~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~ 72 (125)
T PLN03024 22 TPGIATFYTSY-----TPSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGP 72 (125)
T ss_pred cceEEEEeCCC-----CCccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCC
Confidence 57999999864 33799 554 35789999999 99999999999999999764
No 5
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=97.49 E-value=3.7e-05 Score=48.53 Aligned_cols=22 Identities=50% Similarity=0.960 Sum_probs=18.9
Q ss_pred eeeec-ccCCCCCCCcceEEEEe
Q 034491 67 VSAAS-GLYRNGLGCGACYQVHI 88 (93)
Q Consensus 67 vAA~S-~lf~~G~~CGaCyeVrC 88 (93)
++|++ .+|++|.+||+||+++|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~ 23 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTC 23 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccc
Confidence 57889 99999999999999999
No 6
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=80.73 E-value=2.9 Score=29.24 Aligned_cols=23 Identities=17% Similarity=0.551 Sum_probs=15.0
Q ss_pred cceeeec--ccCCCCCCCcceEEEEe
Q 034491 65 GDVSAAS--GLYRNGLGCGACYQVHI 88 (93)
Q Consensus 65 ~~vAA~S--~lf~~G~~CGaCyeVrC 88 (93)
.+|.+.. +-|| ...||.|||++=
T Consensus 43 p~IGg~~~V~gWn-S~~CGtC~~lty 67 (119)
T PF07249_consen 43 PYIGGAPAVAGWN-SPNCGTCWKLTY 67 (119)
T ss_dssp TSEEEETT--STT--TTTT-EEEEEE
T ss_pred CeeccccccccCC-CCCCCCeEEEEE
Confidence 4566666 5675 579999999974
No 7
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=22.83 E-value=31 Score=26.29 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=12.8
Q ss_pred eeeec-ccCCCCCCCcceEEEEeCC
Q 034491 67 VSAAS-GLYRNGLGCGACYQVHISN 90 (93)
Q Consensus 67 vAA~S-~lf~~G~~CGaCyeVrC~~ 90 (93)
.||++ .=-.+...|++|||+.=.+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~ 94 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTS 94 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-S
T ss_pred eeeeeecCCCCCCcccceEEEEEcC
Confidence 44444 3223337899999997553
No 8
>PF15240 Pro-rich: Proline-rich
Probab=20.42 E-value=61 Score=24.25 Aligned_cols=11 Identities=9% Similarity=0.120 Sum_probs=5.6
Q ss_pred hhccCCCCcee
Q 034491 24 EAETCPDCFIR 34 (93)
Q Consensus 24 ~a~~~~~~w~~ 34 (93)
+|-..|.+...
T Consensus 15 SAQ~~dEdv~~ 25 (179)
T PF15240_consen 15 SAQSTDEDVSQ 25 (179)
T ss_pred hcccccccccc
Confidence 44455665533
No 9
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=19.95 E-value=60 Score=22.90 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=9.0
Q ss_pred CCCCCcceEEEE
Q 034491 76 NGLGCGACYQVH 87 (93)
Q Consensus 76 ~G~~CGaCyeVr 87 (93)
.-..||+|.+|+
T Consensus 56 gq~~CGkClrVT 67 (119)
T PF00967_consen 56 GQDSCGKCLRVT 67 (119)
T ss_dssp SGGGTT-EEEEE
T ss_pred CcccccceEEEE
Confidence 347899999986
No 10
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=19.48 E-value=1e+02 Score=20.89 Aligned_cols=58 Identities=24% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCceeeeEEEcCC-CCCCCCCCCcCCCCCCCCCCCCcc
Q 034491 8 LMLLLATLCIMQALAAEAETCPDCFIRSRAAHYPN-SDEQGTDSGACGFGSFGATINGGD 66 (93)
Q Consensus 8 ~~~~~~~~~~~~~~~~~a~~~~~~w~~g~AT~Yg~-~~~~g~~gGaCGyg~~~~~~~g~~ 66 (93)
++++++.++|+...+++-.++-.-+++.++.-+.. .+...+.+.-| |+|+.....|..
T Consensus 2 ~Ll~il~llLll~l~asl~~wr~~~rq~k~~~~~~~~~~~~~E~~p~-YgNL~~~q~~~~ 60 (107)
T PF15330_consen 2 LLLGILALLLLLSLAASLLAWRMKQRQKKAGQYSERRSEQPTEDDPC-YGNLELQQTGPL 60 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCccccCCCCCCcc-ccccccccCCCC
Done!