BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034492
MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN
FFLAGSYTKQIVWKEQLCLVDKPQATYAMPGKN

High Scoring Gene Products

Symbol, full name Information P value
ZDS
zeta-carotene desaturase 		protein from Arabidopsis thaliana 6.3e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034492
        (93 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114789 - symbol:ZDS "zeta-carotene desaturase...   272  6.3e-23   1


>TAIR|locus:2114789 [details] [associations]
            symbol:ZDS "zeta-carotene desaturase" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0016117 "carotenoid biosynthetic process" evidence=IEA]
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0016719
            "carotene 7,8-desaturase activity" evidence=IEA;IDA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0016120 "carotene biosynthetic process"
            evidence=IDA] UniPathway:UPA00803 InterPro:IPR002937
            InterPro:IPR014103 Pfam:PF01593 InterPro:IPR016040 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.40.50.720
            GO:GO:0009941 EMBL:AC009465 GO:GO:0016117 GO:GO:0009509
            UniGene:At.24092 UniGene:At.71000 eggNOG:COG3349
            HOGENOM:HOG000150110 EMBL:U38550 EMBL:AF121947 EMBL:AY059920
            EMBL:AY072096 EMBL:AY096583 IPI:IPI00541621 RefSeq:NP_187138.1
            RefSeq:NP_974222.1 ProteinModelPortal:Q38893 SMR:Q38893
            STRING:Q38893 PaxDb:Q38893 PRIDE:Q38893 DNASU:819647
            EnsemblPlants:AT3G04870.1 EnsemblPlants:AT3G04870.2 GeneID:819647
            KEGG:ath:AT3G04870 TAIR:At3g04870 InParanoid:Q38893 KO:K00514
            OMA:DGNHIEM PhylomeDB:Q38893 ProtClustDB:PLN02487
            BioCyc:ARA:AT3G04870-MONOMER BioCyc:MetaCyc:AT3G04870-MONOMER
            Genevestigator:Q38893 GO:GO:0052887 GO:GO:0052886 GO:GO:0016719
            GO:GO:0052889 TIGRFAMs:TIGR02732 Uniprot:Q38893
        Length = 558

 Score = 272 (100.8 bits), Expect = 6.3e-23, P = 6.3e-23
 Identities = 53/70 (75%), Positives = 58/70 (82%)

Query:     1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
             M +PND+II +VA QV  LFPSS+GLEV WSS VKI QSL  E PGKDPFR DQKTP+KN
Sbjct:   441 MRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKN 500

Query:    61 FFLAGSYTKQ 70
             FFLAGSYTKQ
Sbjct:   501 FFLAGSYTKQ 510


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.137   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.37    30
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  550 (59 KB)
  Total size of DFA:  118 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.25u 0.20s 9.45t   Elapsed:  00:00:01
  Total cpu time:  9.25u 0.20s 9.45t   Elapsed:  00:00:01
  Start:  Thu May  9 17:12:04 2013   End:  Thu May  9 17:12:05 2013

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