BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034492
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=ZDS PE=1 SV=1
Length = 588
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 65/70 (92%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPLPN+EIIRRV+KQVLALFPSSQGLEV WSS VKIGQSL EGPGKDPFR DQKTPV+N
Sbjct: 464 MPLPNEEIIRRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVEN 523
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 524 FFLAGSYTKQ 533
>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes
erecta PE=2 SV=1
Length = 587
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 64/70 (91%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPLPN+EII RV+KQVLALFPSSQGLEV WSS VKIGQSL EGPGKDPFR DQKTPVKN
Sbjct: 467 MPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKN 526
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 527 FFLAGSYTKQ 536
>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=ZDS1 PE=2 SV=1
Length = 574
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/70 (87%), Positives = 62/70 (88%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPLPND II RV KQVL LFPSSQGLEV+WSS VKIGQSL EGPGKDPFR DQKTPVKN
Sbjct: 449 MPLPNDAIIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKN 508
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 509 FFLAGSYTKQ 518
>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=ZDS PE=2 SV=1
Length = 588
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/70 (85%), Positives = 63/70 (90%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPL NDEII+RV KQVLALFPSSQGLEV WSS +KIGQSL EGPGKDPFR DQKTPV+N
Sbjct: 464 MPLSNDEIIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVEN 523
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 524 FFLAGSYTKQ 533
>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays
GN=ZDS1 PE=2 SV=1
Length = 570
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 60/70 (85%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
MPLPN+EII +V KQV+ LFPSS+GLEV WSS VKIGQSL E PG DPFR DQKTPVKN
Sbjct: 449 MPLPNEEIISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKN 508
Query: 61 FFLAGSYTKQ 70
FFL+GSYTKQ
Sbjct: 509 FFLSGSYTKQ 518
>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3
Length = 558
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 58/70 (82%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
M +PND+II +VA QV LFPSS+GLEV WSS VKI QSL E PGKDPFR DQKTP+KN
Sbjct: 441 MRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKN 500
Query: 61 FFLAGSYTKQ 70
FFLAGSYTKQ
Sbjct: 501 FFLAGSYTKQ 510
>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus
(strain PCC 7942) GN=zds PE=3 SV=1
Length = 481
Score = 91.3 bits (225), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/70 (58%), Positives = 52/70 (74%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
+ + N++I + V KQV LFPSS+ L + WS+ VK+ QSL E PG DPFR DQKTP+ N
Sbjct: 384 IAMKNEDIAQHVLKQVHELFPSSRDLNMTWSNVVKLAQSLYREAPGMDPFRPDQKTPIAN 443
Query: 61 FFLAGSYTKQ 70
FFLAGSYT+Q
Sbjct: 444 FFLAGSYTQQ 453
>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=crtQ PE=3 SV=1
Length = 489
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 46/70 (65%)
Query: 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
M N+ I RV KQV ALFPS+ L + W S +K+ QSL E PG D FR Q TP+ N
Sbjct: 385 MKESNEAIAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIAN 444
Query: 61 FFLAGSYTKQ 70
FFLAGSYT+Q
Sbjct: 445 FFLAGSYTQQ 454
>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=crtQ PE=3 SV=2
Length = 479
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLA 64
N+ I + V KQV LFPSS+ L + W S VK+ QSL E PG D +R +QKTP+ NFFLA
Sbjct: 388 NEAIAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLA 447
Query: 65 GSYTKQ 70
GSYT+Q
Sbjct: 448 GSYTQQ 453
>sp|P80093|PDS_CAPAN 15-cis-phytoene desaturase, chloroplastic/chromoplastic OS=Capsicum
annuum GN=PDS PE=1 SV=1
Length = 582
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ EII K++ LFP + ++ VK +S+ PG +P R Q++PV+
Sbjct: 471 DSEIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRLLQRSPVE 530
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 531 GFYLAGDYTKQ 541
>sp|P28554|CRTI_SOLLC Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum
lycopersicum GN=PDS PE=2 SV=1
Length = 583
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ EII K++ LFP + ++ VK +S+ PG +P R Q++P++
Sbjct: 472 DSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIE 531
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 532 GFYLAGDYTKQ 542
>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus
pseudonarcissus GN=PDS1 PE=1 SV=1
Length = 570
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ EII R K++ LFP + ++ VK +S+ P +P R Q++P++
Sbjct: 458 DSEIIERTMKELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIE 517
Query: 60 NFFLAGSYTKQ 70
F+LAG YT Q
Sbjct: 518 GFYLAGDYTNQ 528
>sp|P29273|CRTI_SYNY3 Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=pds PE=3 SV=2
Length = 472
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 5 NDEIIRRVAKQVLALFP----SSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKN 60
++EI+ ++ LFP ++ S VK +S+ PG+ R DQ+T V N
Sbjct: 364 DEEIVAATMAEIKQLFPQHFNGDNPARLLKSHVVKTPRSVYKATPGRQACRPDQRTSVPN 423
Query: 61 FFLAGSYTKQ 70
F+LAG +T Q
Sbjct: 424 FYLAGDFTMQ 433
>sp|P28553|CRTI_SOYBN Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max
GN=PDS1 PE=2 SV=1
Length = 570
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+D+II+ ++ LFP + ++ VK +S+ P +P R Q++P++
Sbjct: 459 DDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIE 518
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 519 GFYLAGDYTKQ 529
>sp|P49086|CRTI_MAIZE Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays
GN=PDS1 PE=2 SV=1
Length = 571
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ EII +++ LFP + ++ VK +S+ P +P R Q++P++
Sbjct: 457 DTEIIDATMEELAKLFPDEIAADQSKAKILKYHIVKTPRSVYKTVPNCEPCRPLQRSPIE 516
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 517 GFYLAGDYTKQ 527
>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC
7942) GN=pds PE=1 SV=1
Length = 474
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 33 FVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQ 70
VK S+ PG+ +R DQ +P+ NFFL G YT Q
Sbjct: 396 IVKTPLSVYKATPGRQQYRPDQASPIANFFLTGDYTMQ 433
>sp|Q0DUI8|CRTI_ORYSJ Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. japonica GN=PDS PE=2 SV=2
Length = 578
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ EII +++ LFP + ++ VK +S+ P +P R Q++P++
Sbjct: 465 DTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIE 524
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 525 GFYLAGDYTKQ 535
>sp|A2XDA1|CRTI_ORYSI Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa
subsp. indica GN=PDS1 PE=2 SV=2
Length = 578
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ EII +++ LFP + ++ VK +S+ P +P R Q++P++
Sbjct: 465 DTEIIEATMQELAKLFPDEIAADQSKAKILKYHVVKTPRSVYKTIPDCEPCRPLQRSPIE 524
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 525 GFYLAGDYTKQ 535
>sp|Q07356|PDS_ARATH 15-cis-phytoene desaturase, chloroplastic/chromoplastic
OS=Arabidopsis thaliana GN=PDS PE=1 SV=1
Length = 566
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 5 NDEIIRRVAKQVLALFPSSQGLE-----VIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVK 59
+ +II K++ LFP + ++ VK +S+ P +P R Q++P++
Sbjct: 453 DSDIIDATMKELEKLFPDEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIE 512
Query: 60 NFFLAGSYTKQ 70
F+LAG YTKQ
Sbjct: 513 GFYLAGDYTKQ 523
>sp|C3Z724|UBE2S_BRAFL Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae
GN=BRAFLDRAFT_259979 PE=3 SV=1
Length = 213
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 31/95 (32%)
Query: 7 EIIRRVAKQVLAL----------FPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ-- 54
+IIR+VAK+VL L FP+ Q + + ++ EGPG P+ Q
Sbjct: 13 QIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATI---------EGPGGTPYEGGQFK 63
Query: 55 ----------KTPVKNFFLAGSYTKQIVWKEQLCL 79
+TP K FFL + + ++C+
Sbjct: 64 IKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICV 98
>sp|Q39102|FTSH1_ARATH ATP-dependent zinc metalloprotease FTSH 1, chloroplastic
OS=Arabidopsis thaliana GN=FTSH1 PE=1 SV=2
Length = 716
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 9 IRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYT 68
+ RVA+Q++ F S+ KIGQ G GPG +PF Q + K++ +A T
Sbjct: 609 VSRVARQMIERFGFSK----------KIGQVAVG-GPGGNPFMGQQMSSQKDYSMA---T 654
Query: 69 KQIVWKEQLCLVDK 82
IV E LV+K
Sbjct: 655 ADIVDAEVRELVEK 668
>sp|Q91YX0|THMS2_MOUSE Protein THEMIS2 OS=Mus musculus GN=Themis2 PE=1 SV=2
Length = 663
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 30 WSSFVKIGQSLCGEGPGKDPFR-----RDQKTPVKNFFLAGSY 67
W SF++ GQ LC GP +R + +K P + F L+G+Y
Sbjct: 278 WVSFLRKGQRLCIYGPASPSWRVVASSKSRKVP-RYFMLSGAY 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,731,525
Number of Sequences: 539616
Number of extensions: 1416034
Number of successful extensions: 2030
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 24
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)