Query 034492
Match_columns 93
No_of_seqs 116 out of 547
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 99.9 7.7E-23 1.7E-27 165.6 8.1 81 1-81 460-540 (569)
2 TIGR02732 zeta_caro_desat caro 99.9 2E-22 4.4E-27 159.0 8.0 81 1-81 384-464 (474)
3 PLN02612 phytoene desaturase 99.5 1E-14 2.3E-19 117.7 7.2 80 2-81 451-535 (567)
4 TIGR02731 phytoene_desat phyto 99.5 9.1E-14 2E-18 107.8 7.1 80 2-81 360-443 (453)
5 TIGR03467 HpnE squalene-associ 99.3 4.2E-12 9.1E-17 95.7 6.9 80 2-81 329-408 (419)
6 COG3349 Uncharacterized conser 99.1 4.6E-11 1E-15 96.0 4.8 78 2-80 372-449 (485)
7 PRK07233 hypothetical protein; 99.1 2E-10 4.4E-15 87.3 6.8 80 2-81 339-418 (434)
8 PF01593 Amino_oxidase: Flavin 98.4 6.3E-08 1.4E-12 71.3 -0.2 80 2-81 353-440 (450)
9 PLN02268 probable polyamine ox 98.1 3.4E-06 7.3E-11 65.2 3.6 78 2-81 337-421 (435)
10 PRK07208 hypothetical protein; 98.0 2.1E-06 4.6E-11 67.1 1.7 75 2-78 368-445 (479)
11 PRK11883 protoporphyrinogen ox 97.9 9.6E-06 2.1E-10 62.2 3.2 65 2-69 362-430 (451)
12 TIGR00562 proto_IX_ox protopor 97.9 1.1E-05 2.4E-10 62.5 3.5 67 2-70 369-439 (462)
13 PLN02576 protoporphyrinogen ox 97.8 1.4E-05 3E-10 62.8 2.1 69 2-70 393-466 (496)
14 PLN02529 lysine-specific histo 97.6 0.00015 3.3E-09 61.2 6.1 80 2-81 496-585 (738)
15 TIGR02733 desat_CrtD C-3',4' d 97.5 0.00035 7.7E-09 55.1 6.2 73 5-78 393-480 (492)
16 KOG0029 Amine oxidase [Seconda 97.4 0.00019 4.2E-09 58.2 4.7 80 2-81 359-446 (501)
17 TIGR02730 carot_isom carotene 97.3 0.00031 6.8E-09 55.6 4.6 72 5-78 393-480 (493)
18 PRK12416 protoporphyrinogen ox 97.3 0.00024 5.2E-09 55.5 3.6 68 2-71 370-441 (463)
19 PLN03000 amine oxidase 97.3 0.0007 1.5E-08 58.3 6.3 78 2-81 520-610 (881)
20 TIGR02734 crtI_fam phytoene de 97.2 0.00061 1.3E-08 53.8 5.2 73 5-78 391-480 (502)
21 PLN02976 amine oxidase 97.2 0.00037 8.1E-09 62.9 4.3 80 2-81 1086-1173(1713)
22 PLN02328 lysine-specific histo 97.1 0.0012 2.7E-08 56.4 6.4 80 2-81 576-666 (808)
23 PLN02676 polyamine oxidase 97.1 0.0018 3.8E-08 51.9 6.5 79 2-81 375-460 (487)
24 PLN02568 polyamine oxidase 96.3 0.011 2.3E-07 48.3 5.7 80 2-81 402-522 (539)
25 KOG4254 Phytoene desaturase [C 95.5 0.055 1.2E-06 44.4 6.7 65 5-70 444-526 (561)
26 COG1232 HemY Protoporphyrinoge 95.4 0.0077 1.7E-07 48.5 1.4 74 2-79 355-432 (444)
27 COG1233 Phytoene dehydrogenase 94.7 0.12 2.5E-06 41.5 6.3 68 7-76 386-467 (487)
28 COG3380 Predicted NAD/FAD-depe 86.1 1.1 2.4E-05 34.9 3.7 67 1-71 245-311 (331)
29 COG1231 Monoamine oxidase [Ami 84.9 2.1 4.6E-05 34.9 5.0 81 2-82 348-435 (450)
30 PF01134 GIDA: Glucose inhibit 79.3 3 6.5E-05 33.3 3.9 55 11-70 312-367 (392)
31 KOG0685 Flavin-containing amin 79.2 3.3 7.2E-05 34.1 4.2 77 2-80 384-477 (498)
32 COG3634 AhpF Alkyl hydroperoxi 72.2 2.4 5.3E-05 34.4 1.7 20 54-73 475-494 (520)
33 PRK05335 tRNA (uracil-5-)-meth 70.6 6.6 0.00014 31.8 3.8 55 12-70 287-342 (436)
34 TIGR00137 gid_trmFO tRNA:m(5)U 69.9 4.6 9.9E-05 32.6 2.8 55 12-70 286-341 (433)
35 KOG0404 Thioredoxin reductase 69.4 1.9 4.1E-05 33.1 0.5 28 46-73 270-298 (322)
36 COG0492 TrxB Thioredoxin reduc 64.2 5.2 0.00011 30.6 2.0 22 51-72 258-279 (305)
37 KOG1276 Protoporphyrinogen oxi 61.7 6.7 0.00014 32.3 2.3 76 2-81 401-481 (491)
38 PF07992 Pyr_redox_2: Pyridine 57.8 7.7 0.00017 26.1 1.8 19 51-69 180-198 (201)
39 PRK10262 thioredoxin reductase 56.5 7.8 0.00017 28.7 1.8 19 54-72 275-293 (321)
40 TIGR03765 ICE_PFL_4695 integra 55.4 14 0.0003 24.5 2.6 28 40-67 6-33 (105)
41 TIGR00136 gidA glucose-inhibit 55.0 20 0.00043 30.4 4.1 54 11-69 314-368 (617)
42 TIGR01377 soxA_mon sarcosine o 53.7 73 0.0016 23.7 6.7 59 5-72 283-343 (380)
43 PRK08294 phenol 2-monooxygenas 48.1 37 0.00081 28.3 4.6 22 58-79 339-360 (634)
44 PRK09754 phenylpropionate diox 47.4 14 0.0003 28.4 1.9 22 52-73 261-282 (396)
45 PRK15317 alkyl hydroperoxide r 47.0 15 0.00033 29.5 2.1 21 52-72 470-490 (517)
46 TIGR00551 nadB L-aspartate oxi 45.8 15 0.00033 29.3 2.0 19 52-70 340-358 (488)
47 PF11072 DUF2859: Protein of u 45.6 22 0.00047 24.7 2.5 30 37-66 41-70 (142)
48 TIGR01292 TRX_reduct thioredox 42.9 18 0.00038 25.8 1.8 17 54-70 261-277 (300)
49 TIGR01176 fum_red_Fp fumarate 41.4 19 0.0004 29.8 1.9 24 52-75 364-388 (580)
50 TIGR03140 AhpF alkyl hydropero 40.7 23 0.00049 28.5 2.2 20 53-72 472-491 (515)
51 COG0445 GidA Flavin-dependent 37.7 43 0.00094 28.5 3.5 51 10-67 315-368 (621)
52 PRK07573 sdhA succinate dehydr 37.3 31 0.00067 28.9 2.6 22 53-74 414-435 (640)
53 COG1249 Lpd Pyruvate/2-oxoglut 37.2 24 0.00051 28.6 1.9 19 54-72 298-316 (454)
54 PRK05192 tRNA uridine 5-carbox 36.3 46 0.00099 28.3 3.4 54 11-69 316-370 (618)
55 TIGR01316 gltA glutamate synth 36.2 28 0.00061 27.5 2.1 16 54-69 411-426 (449)
56 PRK06263 sdhA succinate dehydr 36.2 24 0.00053 28.5 1.8 23 53-75 356-378 (543)
57 PRK11259 solA N-methyltryptoph 36.0 1.2E+02 0.0025 22.6 5.3 54 6-69 285-340 (376)
58 PLN02852 ferredoxin-NADP+ redu 35.7 28 0.0006 28.5 2.0 16 55-70 383-398 (491)
59 PRK12831 putative oxidoreducta 35.0 26 0.00056 27.9 1.7 16 54-69 422-437 (464)
60 PF01266 DAO: FAD dependent ox 34.5 15 0.00033 26.5 0.4 52 9-68 288-341 (358)
61 PRK08071 L-aspartate oxidase; 34.3 28 0.0006 28.1 1.8 18 53-70 340-357 (510)
62 PRK07804 L-aspartate oxidase; 34.2 29 0.00062 28.3 1.9 18 53-70 365-382 (541)
63 PRK09231 fumarate reductase fl 34.1 28 0.00061 28.7 1.8 18 53-70 366-383 (582)
64 cd07404 MPP_MS158 Microscilla 34.0 28 0.0006 23.2 1.5 37 56-92 25-64 (166)
65 PRK04965 NADH:flavorubredoxin 33.3 26 0.00056 26.7 1.4 17 54-70 261-277 (377)
66 PRK09077 L-aspartate oxidase; 32.9 31 0.00067 28.0 1.9 19 52-70 360-378 (536)
67 TIGR01424 gluta_reduc_2 glutat 32.6 28 0.00061 27.3 1.6 17 53-69 288-304 (446)
68 TIGR01373 soxB sarcosine oxida 32.5 2.2E+02 0.0048 21.6 6.5 56 5-68 308-364 (407)
69 PRK13984 putative oxidoreducta 32.0 31 0.00066 28.2 1.7 16 54-69 564-579 (604)
70 PRK12810 gltD glutamate syntha 31.9 30 0.00064 27.5 1.6 16 54-69 426-441 (471)
71 PF08491 SE: Squalene epoxidas 31.4 20 0.00042 27.5 0.5 68 5-78 82-149 (276)
72 PRK07512 L-aspartate oxidase; 31.2 31 0.00066 27.9 1.6 19 52-70 348-366 (513)
73 TIGR03197 MnmC_Cterm tRNA U-34 31.2 82 0.0018 23.8 3.9 19 6-24 255-273 (381)
74 TIGR01421 gluta_reduc_1 glutat 31.1 30 0.00064 27.3 1.5 16 54-69 291-306 (450)
75 PRK06116 glutathione reductase 31.1 31 0.00066 27.0 1.5 16 54-69 291-306 (450)
76 PLN02507 glutathione reductase 30.6 34 0.00075 27.5 1.8 18 52-69 324-341 (499)
77 TIGR01317 GOGAT_sm_gam glutama 30.5 28 0.00061 27.9 1.3 16 54-69 440-455 (485)
78 PRK12769 putative oxidoreducta 30.5 32 0.0007 28.6 1.7 16 54-69 613-628 (654)
79 PRK08010 pyridine nucleotide-d 30.4 36 0.00079 26.5 1.9 17 54-70 280-296 (441)
80 PRK07846 mycothione reductase; 30.4 32 0.0007 27.2 1.6 16 54-69 288-303 (451)
81 PRK08275 putative oxidoreducta 29.8 17 0.00037 29.6 -0.1 19 53-71 364-382 (554)
82 PRK08401 L-aspartate oxidase; 29.3 36 0.00078 27.0 1.7 17 53-69 318-334 (466)
83 PRK13748 putative mercuric red 29.2 33 0.00071 27.6 1.5 17 54-70 391-407 (561)
84 TIGR01318 gltD_gamma_fam gluta 28.8 44 0.00096 26.6 2.1 16 54-69 427-442 (467)
85 PRK07395 L-aspartate oxidase; 28.6 37 0.00079 27.9 1.6 19 52-70 354-372 (553)
86 PRK06175 L-aspartate oxidase; 28.5 40 0.00087 26.6 1.8 18 52-69 338-355 (433)
87 cd07388 MPP_Tt1561 Thermus the 28.4 25 0.00054 25.7 0.6 37 57-93 31-72 (224)
88 PF08845 SymE_toxin: Toxin Sym 28.4 36 0.00078 19.9 1.2 17 54-70 19-35 (57)
89 TIGR03452 mycothione_red mycot 27.9 36 0.00077 26.9 1.4 16 54-69 291-306 (452)
90 PRK07845 flavoprotein disulfid 27.8 36 0.00078 26.9 1.4 17 53-69 299-315 (466)
91 PRK05329 anaerobic glycerol-3- 27.8 41 0.00088 26.9 1.8 30 50-79 369-401 (422)
92 PRK13800 putative oxidoreducta 27.4 24 0.00053 30.6 0.5 18 53-70 369-386 (897)
93 PRK08132 FAD-dependent oxidore 27.4 1.8E+02 0.0039 23.4 5.4 22 58-79 298-319 (547)
94 PLN02815 L-aspartate oxidase 27.3 43 0.00092 27.9 1.8 19 52-70 384-402 (594)
95 cd07393 MPP_DR1119 Deinococcus 27.3 23 0.0005 25.4 0.3 32 61-92 45-80 (232)
96 PRK11749 dihydropyrimidine deh 27.1 40 0.00087 26.5 1.6 17 53-69 412-428 (457)
97 PRK06292 dihydrolipoamide dehy 27.0 44 0.00096 26.0 1.8 17 53-69 293-309 (460)
98 cd07392 MPP_PAE1087 Pyrobaculu 26.7 30 0.00064 23.0 0.7 35 58-92 24-61 (188)
99 PF06739 SBBP: Beta-propeller 26.6 46 0.001 17.5 1.3 17 57-73 22-38 (38)
100 TIGR03329 Phn_aa_oxid putative 26.5 2.1E+02 0.0045 22.5 5.5 59 6-72 317-377 (460)
101 TIGR01812 sdhA_frdA_Gneg succi 26.5 37 0.0008 27.5 1.3 15 56-70 357-371 (566)
102 PRK12770 putative glutamate sy 26.2 42 0.00091 25.3 1.5 15 55-69 312-326 (352)
103 PRK05249 soluble pyridine nucl 26.1 38 0.00082 26.4 1.3 16 54-69 298-313 (461)
104 PRK14727 putative mercuric red 26.1 38 0.00082 26.9 1.3 16 54-69 309-324 (479)
105 PRK13512 coenzyme A disulfide 26.1 39 0.00084 26.5 1.3 18 53-70 264-281 (438)
106 TIGR02053 MerA mercuric reduct 26.0 43 0.00092 26.3 1.6 17 54-70 292-308 (463)
107 PRK07117 acyl carrier protein; 26.0 74 0.0016 19.5 2.4 21 3-23 1-21 (79)
108 PRK08641 sdhA succinate dehydr 26.0 41 0.0009 27.7 1.5 23 53-75 363-385 (589)
109 COG1206 Gid NAD(FAD)-utilizing 25.8 36 0.00077 27.6 1.1 53 14-70 293-346 (439)
110 PRK06115 dihydrolipoamide dehy 25.6 39 0.00084 26.7 1.3 17 54-70 301-317 (466)
111 PRK08205 sdhA succinate dehydr 25.5 43 0.00094 27.5 1.6 15 56-70 373-387 (583)
112 COG0654 UbiH 2-polyprenyl-6-me 25.5 1.8E+02 0.0039 22.2 4.9 62 10-79 237-298 (387)
113 PRK06854 adenylylsulfate reduc 25.4 40 0.00086 28.0 1.3 19 52-70 389-407 (608)
114 PRK11340 phosphodiesterase Yae 25.4 35 0.00076 25.1 1.0 34 59-92 82-121 (271)
115 PRK07803 sdhA succinate dehydr 25.4 44 0.00096 27.8 1.6 21 54-74 401-421 (626)
116 PF00890 FAD_binding_2: FAD bi 25.3 22 0.00049 27.1 -0.1 15 54-68 388-402 (417)
117 PRK09564 coenzyme A disulfide 25.0 48 0.001 25.6 1.7 18 53-70 269-286 (444)
118 TIGR01811 sdhA_Bsu succinate d 24.9 49 0.0011 27.4 1.8 24 52-75 377-400 (603)
119 PRK12809 putative oxidoreducta 24.8 45 0.00098 27.7 1.6 16 54-69 596-611 (639)
120 PRK09078 sdhA succinate dehydr 24.7 47 0.001 27.5 1.6 16 55-70 382-397 (598)
121 TIGR02061 aprA adenosine phosp 24.4 44 0.00095 28.0 1.4 20 52-71 400-419 (614)
122 PRK05675 sdhA succinate dehydr 23.8 53 0.0011 27.0 1.8 20 56-75 360-380 (570)
123 TIGR01438 TGR thioredoxin and 23.8 46 0.001 26.7 1.4 16 54-69 306-321 (484)
124 PRK12778 putative bifunctional 23.0 64 0.0014 27.3 2.1 16 54-69 711-726 (752)
125 KOG2755 Oxidoreductase [Genera 22.9 53 0.0012 25.7 1.5 27 51-77 303-329 (334)
126 TIGR01816 sdhA_forward succina 22.8 55 0.0012 26.8 1.7 14 56-69 351-364 (565)
127 PRK06370 mercuric reductase; V 22.8 53 0.0011 25.8 1.5 17 54-70 297-313 (463)
128 PRK07251 pyridine nucleotide-d 22.7 52 0.0011 25.6 1.5 17 53-69 278-294 (438)
129 TIGR01423 trypano_reduc trypan 22.7 51 0.0011 26.5 1.5 18 53-70 313-330 (486)
130 PRK08958 sdhA succinate dehydr 22.6 52 0.0011 27.2 1.5 15 56-70 378-392 (588)
131 PRK14694 putative mercuric red 22.6 50 0.0011 26.0 1.4 17 54-70 298-314 (468)
132 PRK05945 sdhA succinate dehydr 22.4 54 0.0012 26.8 1.6 15 56-70 368-382 (575)
133 PRK12775 putative trifunctiona 22.4 60 0.0013 28.9 1.9 16 54-69 716-731 (1006)
134 TIGR03143 AhpF_homolog putativ 22.3 59 0.0013 26.5 1.7 16 54-69 269-284 (555)
135 PRK06452 sdhA succinate dehydr 22.2 58 0.0012 26.7 1.7 23 53-75 354-378 (566)
136 PRK08773 2-octaprenyl-3-methyl 22.1 1.7E+02 0.0037 22.1 4.2 23 57-79 280-302 (392)
137 PRK07818 dihydrolipoamide dehy 22.1 55 0.0012 25.7 1.5 16 54-69 299-314 (466)
138 PRK06327 dihydrolipoamide dehy 22.0 56 0.0012 25.9 1.5 16 54-69 310-325 (475)
139 TIGR03385 CoA_CoA_reduc CoA-di 21.8 53 0.0012 25.3 1.4 18 54-71 257-274 (427)
140 PRK13625 bis(5'-nucleosyl)-tet 21.5 40 0.00087 24.5 0.6 20 59-79 38-57 (245)
141 PLN00128 Succinate dehydrogena 21.5 62 0.0013 27.1 1.8 19 56-74 421-440 (635)
142 PRK06912 acoL dihydrolipoamide 21.5 51 0.0011 25.9 1.2 16 54-69 293-308 (458)
143 PF08776 VASP_tetra: VASP tetr 21.4 1.3E+02 0.0029 16.6 2.5 12 6-17 25-36 (40)
144 PHA02239 putative protein phos 21.4 46 0.001 24.3 0.9 34 58-92 30-69 (235)
145 PF12768 Rax2: Cortical protei 21.2 73 0.0016 24.2 2.0 32 61-92 1-33 (281)
146 PRK06467 dihydrolipoamide dehy 21.2 56 0.0012 25.9 1.4 16 54-69 300-315 (471)
147 PTZ00058 glutathione reductase 20.5 61 0.0013 26.8 1.5 17 53-69 360-376 (561)
148 PRK12771 putative glutamate sy 20.3 71 0.0015 26.0 1.8 16 54-69 405-420 (564)
149 PRK06416 dihydrolipoamide dehy 20.3 70 0.0015 25.0 1.7 16 54-69 297-312 (462)
150 PRK12814 putative NADPH-depend 20.2 63 0.0014 27.0 1.5 16 54-69 462-477 (652)
151 PRK13605 endoribonuclease SymE 20.0 77 0.0017 21.3 1.6 20 51-70 30-49 (113)
No 1
>PLN02487 zeta-carotene desaturase
Probab=99.88 E-value=7.7e-23 Score=165.62 Aligned_cols=81 Identities=65% Similarity=0.958 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
+.+++|||+++++++|+++||.+..+.+++++|+|+++|+|.+.||++..||.++|+++|||||||||+|+||+|||++|
T Consensus 460 ~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yPat~EgAv 539 (569)
T PLN02487 460 MPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYIDSMEGAT 539 (569)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCcchHHHHH
Confidence 46899999999999999999998778899999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 034492 81 D 81 (93)
Q Consensus 81 ~ 81 (93)
-
T Consensus 540 ~ 540 (569)
T PLN02487 540 L 540 (569)
T ss_pred H
Confidence 4
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.87 E-value=2e-22 Score=159.00 Aligned_cols=81 Identities=58% Similarity=0.841 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
+++++|||+++++++|+++||.+..+++++++|+|+++|+|.+.||++.+||.++|+++|||||||||+|+||+||+++|
T Consensus 384 ~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv 463 (474)
T TIGR02732 384 MPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGAT 463 (474)
T ss_pred cCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHH
Confidence 36899999999999999999987778899999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 034492 81 D 81 (93)
Q Consensus 81 ~ 81 (93)
.
T Consensus 464 ~ 464 (474)
T TIGR02732 464 L 464 (474)
T ss_pred H
Confidence 4
No 3
>PLN02612 phytoene desaturase
Probab=99.55 E-value=1e-14 Score=117.69 Aligned_cols=80 Identities=29% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCC-----CCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccce
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQ-----GLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQ 76 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~-----~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~ 76 (93)
.+++|||++.++++|.++||... .++++.+++++.+++++...||....||.++||++|||||||||.++||++|
T Consensus 451 ~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~~sm 530 (567)
T PLN02612 451 SRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASM 530 (567)
T ss_pred cCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCchhhH
Confidence 57999999999999999999652 3678888999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 034492 77 LCLVD 81 (93)
Q Consensus 77 ~~~~~ 81 (93)
++++-
T Consensus 531 eGAv~ 535 (567)
T PLN02612 531 EGAVL 535 (567)
T ss_pred HHHHH
Confidence 99874
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.48 E-value=9.1e-14 Score=107.85 Aligned_cols=80 Identities=34% Similarity=0.500 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC----CCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCccccee
Q 034492 2 PLPNDEIIRRVAKQVLALFPSS----QGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQL 77 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~----~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~ 77 (93)
.+++||++++++++|.++||.. ....+++.+++++++++|.+.||....+|..++|++|||+||||++++||++|+
T Consensus 360 ~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~e 439 (453)
T TIGR02731 360 GRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASME 439 (453)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCcccccHH
Confidence 5799999999999999999852 244578889999999999999998888999999999999999999999999999
Q ss_pred cccc
Q 034492 78 CLVD 81 (93)
Q Consensus 78 ~~~~ 81 (93)
+++.
T Consensus 440 gAi~ 443 (453)
T TIGR02731 440 GAVL 443 (453)
T ss_pred HHHH
Confidence 9874
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.32 E-value=4.2e-12 Score=95.74 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceecccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
.+++|++++.++++|.++||......+.+.++.+.+++.+...||....+|...++++|||+||||++++||++|++++.
T Consensus 329 ~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~aGd~~~~~~~~~~egA~~ 408 (419)
T TIGR03467 329 DLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVR 408 (419)
T ss_pred cCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCcccccCCCCCCCcCCEEEecccccCCCcchHHHHHH
Confidence 57899999999999999999654456778899999999999999987779988899999999999999999999998864
No 6
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=4.6e-11 Score=95.98 Aligned_cols=78 Identities=33% Similarity=0.433 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceeccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLV 80 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~ 80 (93)
..++++++..+.+++..++|....++ .+++++++.++.....||++.+||.+.|+++||++||||+.+.|-.|||.++
T Consensus 372 ~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~~smE~A~ 449 (485)
T COG3349 372 FESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGAT 449 (485)
T ss_pred ccchhhHHHHHHHHhhhcCCchhccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCcCccchhh
Confidence 45789999999999999999766666 7889999999999999999999999999999999999999999999999875
No 7
>PRK07233 hypothetical protein; Provisional
Probab=99.11 E-value=2e-10 Score=87.25 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceecccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
.+++++++++++++|.+++|......+++.++.|+++|.+.+.||....+|..+++++|||+|||+....++.+|++++.
T Consensus 339 ~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~~~~~~Ai~ 418 (434)
T PRK07233 339 QMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPEDRSINGSVR 418 (434)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccccCchhhcCCCcccCcCCEEEeCCcccCCccCchhHHHH
Confidence 46889999999999999999765567899999999999999999988889999999999999999766677889988763
No 8
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.37 E-value=6.3e-08 Score=71.26 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----ceecCCCCCCC--CCCCCCCCC-CCEEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLCGEGPGKDP--FRRDQKTPV-KNFFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~-----Atf~~~PG~~~--~RP~~~T~~-~nLfLAGDwt~t~~p 73 (93)
.+++|++++.++++|.+++|......+.+..+.+..+ .++.+.++... .+|..++++ +|||+||||++.+|+
T Consensus 353 ~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~ 432 (450)
T PF01593_consen 353 DLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP 432 (450)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST
T ss_pred ccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC
Confidence 5789999999999999999952223333444444333 33333333333 577788888 799999999999999
Q ss_pred cceecccc
Q 034492 74 KEQLCLVD 81 (93)
Q Consensus 74 At~~~~~~ 81 (93)
++|++++.
T Consensus 433 ~~~~gA~~ 440 (450)
T PF01593_consen 433 GGIEGAIL 440 (450)
T ss_dssp TSHHHHHH
T ss_pred CcHHHHHH
Confidence 99987753
No 9
>PLN02268 probable polyamine oxidase
Probab=98.07 E-value=3.4e-06 Score=65.21 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCce-----ec-CCCCC-CCCCCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSL-----CG-EGPGK-DPFRRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~At-----f~-~~PG~-~~~RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.++++++++.++++|.++||.. ..+....+.+....- +. +.||. ...++..+.|+.+||+||++|++.|+.
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~~--~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~g 414 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPDA--TEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFPG 414 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCCC--CCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCcccc
Confidence 4789999999999999999853 345555555433221 11 34564 223445567788999999999999999
Q ss_pred ceecccc
Q 034492 75 EQLCLVD 81 (93)
Q Consensus 75 t~~~~~~ 81 (93)
+|++|+.
T Consensus 415 ~~eGA~~ 421 (435)
T PLN02268 415 SVHGAYS 421 (435)
T ss_pred cHHHHHH
Confidence 9999874
No 10
>PRK07208 hypothetical protein; Provisional
Probab=98.02 E-value=2.1e-06 Score=67.10 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC---CCCCCCCEEEecCccccCcccceec
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD---QKTPVKNFFLAGSYTKQIVWKEQLC 78 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~---~~T~~~nLfLAGDwt~t~~pAt~~~ 78 (93)
.+++|||++++.++|.++.+ .....++.++|.|.+++.+.+.+|.....+. ..++.+|||+||++....| .+|+.
T Consensus 368 ~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~-~~~d~ 445 (479)
T PRK07208 368 NMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY-NNQDH 445 (479)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc-CChhH
Confidence 47899999999999999855 3357799999999999999999988766553 2367899999999876555 45543
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.90 E-value=9.6e-06 Score=62.22 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~ 69 (93)
.++++++++.++++|+++++.. ..+.+..+.|.+.|.+.+.||.... ++.... ++|||+||||+.
T Consensus 362 ~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~ 430 (451)
T PRK11883 362 DATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE 430 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC
Confidence 4679999999999999999742 3455788889999999999987543 233333 779999999986
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.89 E-value=1.1e-05 Score=62.53 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC----CCCCCCCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD----QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~----~~T~~~nLfLAGDwt~t 70 (93)
+++++|+++.+.++|.++++.. ..+.+..|.|.++|.+.+.+|....++. ..+..+||++||||...
T Consensus 369 ~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g 439 (462)
T TIGR00562 369 DLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG 439 (462)
T ss_pred CCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC
Confidence 5789999999999999999743 3477889999999999999997655543 23556899999999863
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=97.75 E-value=1.4e-05 Score=62.77 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC---CC--CCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT---PV--KNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T---~~--~nLfLAGDwt~t 70 (93)
.+++|++++.+.++|+++++......+....+.+.+.|.+.+.+|+....+..+. .. +||++||||+..
T Consensus 393 ~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g 466 (496)
T PLN02576 393 SASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGG 466 (496)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCC
Confidence 4789999999999999999853212344556778889999999998655543333 22 799999999984
No 14
>PLN02529 lysine-specific histone demethylase 1
Probab=97.59 E-value=0.00015 Score=61.25 Aligned_cols=80 Identities=10% Similarity=0.004 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCCceeeEEEEEeCCcee-----cC-CCCCCC-CCCCCCCC-CCCEEEecCccccC
Q 034492 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSFVKIGQSLC-----GE-GPGKDP-FRRDQKTP-VKNFFLAGSYTKQI 71 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~--~~~a~v~~~~Vire~~Atf-----~~-~PG~~~-~RP~~~T~-~~nLfLAGDwt~t~ 71 (93)
.++++++++.++.+|+++|+. .....+....+.+....-| ++ .||... .+.....+ ..+||+|||+|+..
T Consensus 496 ~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~ 575 (738)
T PLN02529 496 NTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQ 575 (738)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCC
Confidence 478899999999999999963 1112444444444332222 21 222111 11111223 46899999999999
Q ss_pred cccceecccc
Q 034492 72 VWKEQLCLVD 81 (93)
Q Consensus 72 ~pAt~~~~~~ 81 (93)
||+||++|+.
T Consensus 576 ~pgtVeGAi~ 585 (738)
T PLN02529 576 YPATMHGAFL 585 (738)
T ss_pred CCeEeHHHHH
Confidence 9999999875
No 15
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.45 E-value=0.00035 Score=55.07 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEE----------eCCceecCCCCCC---CCCCCCCCCCCCEEEecCcccc-
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVK----------IGQSLCGEGPGKD---PFRRDQKTPVKNFFLAGSYTKQ- 70 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vir----------e~~Atf~~~PG~~---~~RP~~~T~~~nLfLAGDwt~t- 70 (93)
.+++.+++++.|.+.+|... ..|+...|.. ..-+.+-...... ..+|..+|+++||||||+||..
T Consensus 393 k~~~~~~il~~le~~~p~l~-~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~~~pG 471 (492)
T TIGR02733 393 KKQYTQTIIERLGHYFDLLE-ENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDSIHPG 471 (492)
T ss_pred HHHHHHHHHHHHHHHCCCcc-ccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCccCCC
Confidence 35688899999999999753 5565555432 1123332222111 1356668999999999999986
Q ss_pred -Ccccceec
Q 034492 71 -IVWKEQLC 78 (93)
Q Consensus 71 -~~pAt~~~ 78 (93)
|+|-.+++
T Consensus 472 ~Gv~g~~~s 480 (492)
T TIGR02733 472 EGTAGVSYS 480 (492)
T ss_pred CcHHHHHHH
Confidence 46655444
No 16
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.44 E-value=0.00019 Score=58.15 Aligned_cols=80 Identities=20% Similarity=0.202 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCC-----ceecC-CCCCCCCC-CCCCCCCCC-EEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQ-----SLCGE-GPGKDPFR-RDQKTPVKN-FFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~-----Atf~~-~PG~~~~R-P~~~T~~~n-LfLAGDwt~t~~p 73 (93)
.+++++++..++..|+++|+.......++..|.+.-. -++.+ .+|....+ .....++.| +|+||++|.+.||
T Consensus 359 ~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~ 438 (501)
T KOG0029|consen 359 TLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP 438 (501)
T ss_pred cCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC
Confidence 4789999999999999999933334445555554322 22222 22332223 445678888 9999999999999
Q ss_pred cceecccc
Q 034492 74 KEQLCLVD 81 (93)
Q Consensus 74 At~~~~~~ 81 (93)
.||.+++.
T Consensus 439 ~tm~GA~~ 446 (501)
T KOG0029|consen 439 GTMHGAYL 446 (501)
T ss_pred CchHHHHH
Confidence 99999875
No 17
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.33 E-value=0.00031 Score=55.61 Aligned_cols=72 Identities=7% Similarity=0.062 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCc--eecCCCC-C---C-------CCC-CCCCCCCCCEEEecCcccc
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQS--LCGEGPG-K---D-------PFR-RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~A--tf~~~PG-~---~-------~~R-P~~~T~~~nLfLAGDwt~t 70 (93)
.+++.++++..|.+.+|... ..|+...+.. |.. .|...+| . . ..+ |..+|+++||||||+||..
T Consensus 393 k~~~~~~il~~l~~~~p~l~-~~I~~~~~~T-P~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~p 470 (493)
T TIGR02730 393 KEADAERIIDRLEKIFPGLD-SAIDYKEVGT-PRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFP 470 (493)
T ss_pred HHHHHHHHHHHHHHHCCChh-hcEEEEEeeC-chhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCC
Confidence 45688999999999999753 5555555432 111 1111111 1 0 112 6678999999999999975
Q ss_pred --Ccccceec
Q 034492 71 --IVWKEQLC 78 (93)
Q Consensus 71 --~~pAt~~~ 78 (93)
|+|..|++
T Consensus 471 G~Gv~g~~~s 480 (493)
T TIGR02730 471 GQGLNAVAFS 480 (493)
T ss_pred CCCHHHHHHH
Confidence 56665454
No 18
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.31 E-value=0.00024 Score=55.47 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCC----CCCCCCCCCCEEEecCccccC
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPF----RRDQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~----RP~~~T~~~nLfLAGDwt~t~ 71 (93)
.+++||+++.++++|+++|+.. ..+...+|.+.+++.+...+|.... ++..+.+.+|||+||||+...
T Consensus 370 ~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~ 441 (463)
T PRK12416 370 NYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGV 441 (463)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccc
Confidence 4689999999999999999743 4677788999888888887774222 122234468999999998754
No 19
>PLN03000 amine oxidase
Probab=97.27 E-value=0.0007 Score=58.30 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCC--CCCCceeeEEEEEeCCceecCCCCCCCC-CCCC--------CCCC--CCEEEecCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPS--SQGLEVIWSSFVKIGQSLCGEGPGKDPF-RRDQ--------KTPV--KNFFLAGSYT 68 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~--~~~a~v~~~~Vire~~Atf~~~PG~~~~-RP~~--------~T~~--~nLfLAGDwt 68 (93)
.++++++++.++.+|+++|+. .....++...+.+....-|.. |++.. .|+. ..|+ .+||+||+.|
T Consensus 520 ~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysr--GSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaT 597 (881)
T PLN03000 520 TMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSL--GSYSNVAVGASGDDYDILAESVGDGRLFFAGEAT 597 (881)
T ss_pred cCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCC--ccccCCCCCCchHHHHHHhCcCCCCcEEEeehHH
Confidence 478999999999999999963 112345556566544433332 33222 2333 2354 3799999999
Q ss_pred ccCcccceecccc
Q 034492 69 KQIVWKEQLCLVD 81 (93)
Q Consensus 69 ~t~~pAt~~~~~~ 81 (93)
...||+||++|+.
T Consensus 598 s~~~~GTVhGAie 610 (881)
T PLN03000 598 TRRYPATMHGAFV 610 (881)
T ss_pred hCCCCeeHHHHHH
Confidence 9999999999874
No 20
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.23 E-value=0.00061 Score=53.77 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCceeeEEEEE----------eCCceecCCCC---CCCCCCC-CCCCCCCEEEecCccc
Q 034492 5 NDEIIRRVAKQVLAL-FPSSQGLEVIWSSFVK----------IGQSLCGEGPG---KDPFRRD-QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 5 deel~~~v~~eL~~~-~P~~~~a~v~~~~Vir----------e~~Atf~~~PG---~~~~RP~-~~T~~~nLfLAGDwt~ 69 (93)
.+++.+++++.|.+. +|... ..|+...+.. ..-+.+-..+. ....||. .+|+++||||||+||.
T Consensus 391 k~~~~~~il~~l~~~~~p~l~-~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~ 469 (502)
T TIGR02734 391 GPRYRDRILAYLEERAIPGLR-DRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTH 469 (502)
T ss_pred HHHHHHHHHHHHHHhcCCChh-HheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCC
Confidence 456889999999997 99763 4555555432 11233322211 1225775 4789999999999998
Q ss_pred c--Ccccceec
Q 034492 70 Q--IVWKEQLC 78 (93)
Q Consensus 70 t--~~pAt~~~ 78 (93)
. |.|..+++
T Consensus 470 pG~Gv~g~~~s 480 (502)
T TIGR02734 470 PGAGVPGVLGS 480 (502)
T ss_pred CCCCHHHHHHH
Confidence 6 57765554
No 21
>PLN02976 amine oxidase
Probab=97.22 E-value=0.00037 Score=62.92 Aligned_cols=80 Identities=15% Similarity=0.076 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceec------CCCCCCC-CCCCCCCCCCC-EEEecCccccCcc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCG------EGPGKDP-FRRDQKTPVKN-FFLAGSYTKQIVW 73 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~------~~PG~~~-~RP~~~T~~~n-LfLAGDwt~t~~p 73 (93)
.++++++++.++.+|+++|+......+....+.+....-|. ..||... .+.....|+.| ||+||+.|...||
T Consensus 1086 sLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~p 1165 (1713)
T PLN02976 1086 SMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHP 1165 (1713)
T ss_pred hCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCc
Confidence 47899999999999999998533345666666654333222 2344322 12222356666 9999999999999
Q ss_pred cceecccc
Q 034492 74 KEQLCLVD 81 (93)
Q Consensus 74 At~~~~~~ 81 (93)
.||.+|+.
T Consensus 1166 GTVHGAIe 1173 (1713)
T PLN02976 1166 DTVGGAMM 1173 (1713)
T ss_pred chHHHHHH
Confidence 99999874
No 22
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.13 E-value=0.0012 Score=56.36 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCC--CCCceeeEEEEEeCCceecC------CCCCCC-CCCCCCCCC--CCEEEecCcccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSS--QGLEVIWSSFVKIGQSLCGE------GPGKDP-FRRDQKTPV--KNFFLAGSYTKQ 70 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~--~~a~v~~~~Vire~~Atf~~------~PG~~~-~RP~~~T~~--~nLfLAGDwt~t 70 (93)
.++++++++.++++|+++|+.. ....+....+.+....-|.. .||... ..+....++ .+||+||++|..
T Consensus 576 ~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~ 655 (808)
T PLN02328 576 TLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNK 655 (808)
T ss_pred cCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhC
Confidence 4789999999999999999631 12345566666655443332 233321 111112233 479999999999
Q ss_pred Ccccceecccc
Q 034492 71 IVWKEQLCLVD 81 (93)
Q Consensus 71 ~~pAt~~~~~~ 81 (93)
.|+++|++|+.
T Consensus 656 ~~~GtVhGAi~ 666 (808)
T PLN02328 656 QYPATMHGAFL 666 (808)
T ss_pred CCCeEhHHHHH
Confidence 99999999864
No 23
>PLN02676 polyamine oxidase
Probab=97.08 E-value=0.0018 Score=51.94 Aligned_cols=79 Identities=11% Similarity=-0.030 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE---eCCce--e-cCCCCCCC-CCCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK---IGQSL--C-GEGPGKDP-FRRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vir---e~~At--f-~~~PG~~~-~RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.+++++.++.++++|+++|+.. ...+....+.. ++.+. + .+.||... .++.-+.|+.+||+||+.|+..|+.
T Consensus 375 ~~s~e~~~~~vl~~L~~~~g~~-~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~g 453 (487)
T PLN02676 375 QQPDSETKAEIMEVLRKMFGPN-IPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYNG 453 (487)
T ss_pred hCCHHHHHHHHHHHHHHHhCCC-CCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEecccccccccc
Confidence 4788999999999999999732 23344443332 22211 1 13455432 2233346778999999999999999
Q ss_pred ceecccc
Q 034492 75 EQLCLVD 81 (93)
Q Consensus 75 t~~~~~~ 81 (93)
+|++|+.
T Consensus 454 ~~eGA~~ 460 (487)
T PLN02676 454 YVHGAYL 460 (487)
T ss_pred chHHHHH
Confidence 9999875
No 24
>PLN02568 polyamine oxidase
Probab=96.25 E-value=0.011 Score=48.28 Aligned_cols=80 Identities=16% Similarity=0.118 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------------------CceeeEEEEEe---CCce--e-cCCCCCCCC-CCC
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQG---------------------LEVIWSSFVKI---GQSL--C-GEGPGKDPF-RRD 53 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~---------------------a~v~~~~Vire---~~At--f-~~~PG~~~~-RP~ 53 (93)
.++++++++.++..|+++|+.... ..+....+.+. +.+. + .+.||+... +-.
T Consensus 402 ~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~ 481 (539)
T PLN02568 402 KLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDR 481 (539)
T ss_pred cCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHH
Confidence 478999999999999999973211 23444433332 2221 1 123454321 111
Q ss_pred CCCCC-------------CCEEEecCccccCcccceecccc
Q 034492 54 QKTPV-------------KNFFLAGSYTKQIVWKEQLCLVD 81 (93)
Q Consensus 54 ~~T~~-------------~nLfLAGDwt~t~~pAt~~~~~~ 81 (93)
-+.|+ .+||+||.-|+..|+.||.+|..
T Consensus 482 La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~ 522 (539)
T PLN02568 482 MAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYF 522 (539)
T ss_pred HhCccccccccccccCCCccEEEeecccCCCccchHHHHHH
Confidence 12233 36999999999999999999864
No 25
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.50 E-value=0.055 Score=44.44 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEE---------EeCC-ceecCCCCC---CCCCCCC-----CCCCCCEEEecC
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFV---------KIGQ-SLCGEGPGK---DPFRRDQ-----KTPVKNFFLAGS 66 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vi---------re~~-Atf~~~PG~---~~~RP~~-----~T~~~nLfLAGD 66 (93)
+++.++++++.+.+++|.+.. .|+...|. ..++ ..|..+-|. +-.||-. +|||+||||+||
T Consensus 444 K~~~ae~~~~~ie~l~Pgfss-sv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs 522 (561)
T KOG4254|consen 444 KEAFAERVFSVIEKLAPGFSS-SVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGS 522 (561)
T ss_pred HHHHHHHHHHHHHHHcCCccc-eEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceEEecC
Confidence 567899999999999998753 34444332 2222 334422232 2348888 999999999999
Q ss_pred cccc
Q 034492 67 YTKQ 70 (93)
Q Consensus 67 wt~t 70 (93)
-+.+
T Consensus 523 ~afP 526 (561)
T KOG4254|consen 523 GAFP 526 (561)
T ss_pred CCCC
Confidence 8765
No 26
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.37 E-value=0.0077 Score=48.46 Aligned_cols=74 Identities=9% Similarity=0.110 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC----CCCEEEecCccccCccccee
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP----VKNFFLAGSYTKQIVWKEQL 77 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~----~~nLfLAGDwt~t~~pAt~~ 77 (93)
.++||||++.++.+|.++++... ..++.+|.|.+++-+.+.+|...++...+.. .+|++++|-|-.- +-..-
T Consensus 355 ~~~dee~~~~~l~~L~~~~~~~~--~~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g--~g~~d 430 (444)
T COG1232 355 TMSDEELVAAVLDDLKKLGGING--DPVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG--VGLPD 430 (444)
T ss_pred ccCHHHHHHHHHHHHHHHcCcCc--chhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC--CCchH
Confidence 46799999999999999999653 2338899999999999999988776544433 3689999976654 44444
Q ss_pred cc
Q 034492 78 CL 79 (93)
Q Consensus 78 ~~ 79 (93)
|.
T Consensus 431 ~I 432 (444)
T COG1232 431 CI 432 (444)
T ss_pred HH
Confidence 44
No 27
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.65 E-value=0.12 Score=41.47 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCceeeEEEEE----eC-----Cc-eec---CCCCCCCCCCCC-CCCCCCEEEecCccccCc
Q 034492 7 EIIRRVAKQVLALFPSSQGLEVIWSSFVK----IG-----QS-LCG---EGPGKDPFRRDQ-KTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 7 el~~~v~~eL~~~~P~~~~a~v~~~~Vir----e~-----~A-tf~---~~PG~~~~RP~~-~T~~~nLfLAGDwt~t~~ 72 (93)
++.+. ..++.+.+|... ..++..++.. |+ +- .+. ........||.. +|+++||||+|++|+.|=
T Consensus 386 ~~~~~-~~~~~~~~p~~~-~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga~t~PG~ 463 (487)
T COG1233 386 SLADA-IDALEELAPGLR-DRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGASTHPGG 463 (487)
T ss_pred HHHHH-HHHHhhcCCCcc-cceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCCcCCCCC
Confidence 34444 447889999764 4555555553 11 00 111 012233457765 599999999999998754
Q ss_pred ccce
Q 034492 73 WKEQ 76 (93)
Q Consensus 73 pAt~ 76 (93)
-=+|
T Consensus 464 Gv~g 467 (487)
T COG1233 464 GVPG 467 (487)
T ss_pred Ccch
Confidence 4433
No 28
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=86.07 E-value=1.1 Score=34.89 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccC
Q 034492 1 MPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 1 ~~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~ 71 (93)
+++++|..+..+...-.++++. ..+.+..+.+.+.+.|.+...-+. -|-...+--+|+.||||...+
T Consensus 245 ~~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~WrYA~P~~~~~~---~~L~ad~~~~l~~cGDwc~Gg 311 (331)
T COG3380 245 LDHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWRYAIPNDAVAG---PPLDADRELPLYACGDWCAGG 311 (331)
T ss_pred hcCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccccccccccccC---CccccCCCCceeeecccccCc
Confidence 3567777776666666666652 225566677788888776654432 222223344699999999874
No 29
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=84.93 E-value=2.1 Score=34.86 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEE------eCCceecCCCCCCCC-CCCCCCCCCCEEEecCccccCccc
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVK------IGQSLCGEGPGKDPF-RRDQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vir------e~~Atf~~~PG~~~~-RP~~~T~~~nLfLAGDwt~t~~pA 74 (93)
.++.++.++.+..++.++||+...........+. ..-.+-...||+... =|...-+...+++||-=+.+.|+.
T Consensus 348 ~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~G 427 (450)
T COG1231 348 ALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFGG 427 (450)
T ss_pred cCCHHHHHHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeecccccccc
Confidence 5788999999999999999953222222212222 122233344554322 244445678899999556668999
Q ss_pred ceeccccC
Q 034492 75 EQLCLVDK 82 (93)
Q Consensus 75 t~~~~~~~ 82 (93)
.|++++..
T Consensus 428 w~eGAi~S 435 (450)
T COG1231 428 WLEGAIRS 435 (450)
T ss_pred hhHHHHHH
Confidence 99998864
No 30
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=79.33 E-value=3 Score=33.26 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecCcccc
Q 034492 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTKQ 70 (93)
Q Consensus 11 ~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~-~~nLfLAGDwt~t 70 (93)
.+..++-+..|....+.++..-+.. +-+|..+|-. .+.-+|. ++|||+||+-+-+
T Consensus 312 ~~Q~~~~r~IpGLe~a~~~r~Gy~~--ey~~v~~~~l---~~~l~~k~~~~lf~AGqi~G~ 367 (392)
T PF01134_consen 312 DVQKRIFRSIPGLENAEILRPGYAH--EYDFVDPPQL---LNTLETKKIPGLFFAGQINGT 367 (392)
T ss_dssp HHHHHHHTTSTTTTT--EEE--EEE--EEEEE-GGGB---BTTSBBSSSBTEEE-GGGGTB
T ss_pred HHHHHHhhcCCChhcChhhheEEee--eeeEEehhhc---ccceEECCCCCceECCCCcch
Confidence 4566777889988778766544433 4466666643 3466776 9999999998764
No 31
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=79.21 E-value=3.3 Score=34.14 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC-----------------CCCCCCCCEEEe
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR-----------------DQKTPVKNFFLA 64 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP-----------------~~~T~~~nLfLA 64 (93)
.++|||+.+.+..-|++++....-+++ .+++|-.=-.--+.=|+|.++. ...++-+.+.+|
T Consensus 384 ~lsdEev~e~~~~~lr~fl~n~~iP~p--~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FA 461 (498)
T KOG0685|consen 384 TLSDEEVLEGLTKLLRKFLKNPEIPKP--KKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFA 461 (498)
T ss_pred hCCHHHHHHHHHHHHHHhcCCCCCCCc--hhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEc
Confidence 479999999999999999985433333 2334311111112224444432 222355678899
Q ss_pred cCccccCcccceeccc
Q 034492 65 GSYTKQIVWKEQLCLV 80 (93)
Q Consensus 65 GDwt~t~~pAt~~~~~ 80 (93)
|.-|+..|..|--+++
T Consensus 462 GEaThr~~YsTthGA~ 477 (498)
T KOG0685|consen 462 GEATHRTFYSTTHGAV 477 (498)
T ss_pred cccccccceehhhhhH
Confidence 9999888887766665
No 32
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.21 E-value=2.4 Score=34.36 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=17.5
Q ss_pred CCCCCCCEEEecCccccCcc
Q 034492 54 QKTPVKNFFLAGSYTKQIVW 73 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t~~p 73 (93)
..|++||+|-|||-|.+.|=
T Consensus 475 g~TsvpGvFAAGD~T~~~yK 494 (520)
T COG3634 475 GETNVPGVFAAGDCTTVPYK 494 (520)
T ss_pred CCcCCCceeecCcccCCccc
Confidence 47899999999999988774
No 33
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=70.60 E-value=6.6 Score=31.85 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecCcccc
Q 034492 12 VAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQ 70 (93)
Q Consensus 12 v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T-~~~nLfLAGDwt~t 70 (93)
+..++-+..|....+.+...-+.. +=+|+..|.. .-+.-++ .++|||+||..+.+
T Consensus 287 ~Q~~~~r~Ipgle~a~~~r~G~~~--~~~~i~~p~~--l~~~l~~k~~~~l~~AGqi~g~ 342 (436)
T PRK05335 287 EQKRVFRMIPGLENAEFVRYGVMH--RNTFINSPKL--LDPTLQLKKRPNLFFAGQITGV 342 (436)
T ss_pred HHHHHHhcccchhceEEEeceEEe--eccccCChhh--CchhccccCCCCEEeeeeecCc
Confidence 445666788887777776655544 4467777765 3445555 57999999998875
No 34
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=69.95 E-value=4.6 Score=32.61 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=38.5
Q ss_pred HHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecCcccc
Q 034492 12 VAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTKQ 70 (93)
Q Consensus 12 v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T-~~~nLfLAGDwt~t 70 (93)
+..++-+..|....++++..-+.. +=+|+.+|-. +.|.-++ .++|||+||=.+-+
T Consensus 286 ~Q~~~~r~ipgle~a~~~r~g~~~--~~~~i~~p~~--L~~~l~~k~~~~lf~AGQi~G~ 341 (433)
T TIGR00137 286 EQKRVFRLIPGLENAEFVRMGVMH--RNTFINSPQL--LTASLHFKDRQTLFFAGQLTGV 341 (433)
T ss_pred HHHHHHhcCcCccceEEeecceEE--eeeeeCCHHH--hhHHhccCCCCCEEECcccccc
Confidence 455667788987777776555543 4577777766 5676666 47999999966643
No 35
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=1.9 Score=33.07 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=21.3
Q ss_pred CCCCCCCCCC-CCCCCEEEecCccccCcc
Q 034492 46 GKDPFRRDQK-TPVKNFFLAGSYTKQIVW 73 (93)
Q Consensus 46 G~~~~RP~~~-T~~~nLfLAGDwt~t~~p 73 (93)
|+-..||+.. |+++|+|-|||.-+..|=
T Consensus 270 GYi~t~pgts~TsvpG~FAAGDVqD~kyR 298 (322)
T KOG0404|consen 270 GYIVTRPGTSLTSVPGVFAAGDVQDKKYR 298 (322)
T ss_pred ceEEeccCcccccccceeeccccchHHHH
Confidence 4444588554 899999999998877663
No 36
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=64.16 E-value=5.2 Score=30.57 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.4
Q ss_pred CCCCCCCCCCEEEecCccccCc
Q 034492 51 RRDQKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 51 RP~~~T~~~nLfLAGDwt~t~~ 72 (93)
....+|++||+|.|||-+...+
T Consensus 258 ~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 258 DEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred CCCcccCCCCEEEeEeeccCcc
Confidence 3458899999999999988765
No 37
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=61.68 E-value=6.7 Score=32.27 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCC-----CCCCCCCEEEecCccccCcccce
Q 034492 2 PLPNDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRD-----QKTPVKNFFLAGSYTKQIVWKEQ 76 (93)
Q Consensus 2 ~~~deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~-----~~T~~~nLfLAGDwt~t~~pAt~ 76 (93)
..+.||+++.+..+|.+.+.-.+. .....|.-.+++.+-+..|.+...=. +..+--+||++|-|... ++=+
T Consensus 401 ~~S~ee~~~~v~~alq~~Lgi~~~--P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G--v~vg 476 (491)
T KOG1276|consen 401 VPSPEELVNAVTSALQKMLGISNK--PVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG--VSVG 476 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCC--cccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCC--CChh
Confidence 357899999999999999976543 34445555568999999998765322 22333589999988875 5555
Q ss_pred ecccc
Q 034492 77 LCLVD 81 (93)
Q Consensus 77 ~~~~~ 81 (93)
-|.++
T Consensus 477 dcI~s 481 (491)
T KOG1276|consen 477 DCIES 481 (491)
T ss_pred HHHHh
Confidence 55544
No 38
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=57.83 E-value=7.7 Score=26.13 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.6
Q ss_pred CCCCCCCCCCEEEecCccc
Q 034492 51 RRDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 51 RP~~~T~~~nLfLAGDwt~ 69 (93)
-+..+|..+|+|.+||-+.
T Consensus 180 d~~~~t~~~~Iya~GD~a~ 198 (201)
T PF07992_consen 180 DENLQTSVPGIYAAGDCAG 198 (201)
T ss_dssp BTTSBBSSTTEEE-GGGBE
T ss_pred ccccccccccccccccccc
Confidence 4566788999999999764
No 39
>PRK10262 thioredoxin reductase; Provisional
Probab=56.49 E-value=7.8 Score=28.71 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=15.5
Q ss_pred CCCCCCCEEEecCccccCc
Q 034492 54 QKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t~~ 72 (93)
.+|+.+|+|.|||-+...+
T Consensus 275 ~~t~~~~VyA~GD~~~~~~ 293 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIY 293 (321)
T ss_pred cccCCCCEEECeeccCCCc
Confidence 5789999999999886443
No 40
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=55.37 E-value=14 Score=24.53 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=22.3
Q ss_pred eecCCCCCCCCCCCCCCCCCCEEEecCc
Q 034492 40 LCGEGPGKDPFRRDQKTPVKNFFLAGSY 67 (93)
Q Consensus 40 tf~~~PG~~~~RP~~~T~~~nLfLAGDw 67 (93)
+..-+||.-..|+-.-+.+..||+.||=
T Consensus 6 S~~ltpG~v~~r~l~~pg~~p~FlIGdD 33 (105)
T TIGR03765 6 SPRLTPGKVQRRPLNLPGLTPLFLIGDD 33 (105)
T ss_pred cCCCCCCccccceecCCCCCceEEEeCC
Confidence 3456788888888877888899999983
No 41
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=55.04 E-value=20 Score=30.38 Aligned_cols=54 Identities=17% Similarity=0.331 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCC-CCCEEEecCccc
Q 034492 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTP-VKNFFLAGSYTK 69 (93)
Q Consensus 11 ~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~-~~nLfLAGDwt~ 69 (93)
.+..++-+..|.+..+.++..-+-. +-.|.. |- ...+.-+|. ++|||+|||..-
T Consensus 314 ~~q~~i~~~ipGle~a~~~r~gy~~--e~~~i~-p~--~l~~~le~k~~~gLf~AGqi~G 368 (617)
T TIGR00136 314 DVQLQIVRSIPGLENAEILRPGYAI--EYDFFD-PR--QLKPTLETKLIQGLFFAGQING 368 (617)
T ss_pred HHHHHHHHcCcCcccceEeccccce--EEeEEC-hh--hCchhheeCCCCCeEEccccCC
Confidence 4556666778877666654311111 112333 43 255666776 899999999554
No 42
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=53.69 E-value=73 Score=23.73 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC--CCCCCCCCEEEecCccccCc
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR--DQKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP--~~~T~~~nLfLAGDwt~t~~ 72 (93)
+++.++.+++.+.+++|......+. .......++|+. .| +.....+|||+|.=+...|+
T Consensus 283 ~~~~~~~l~~~~~~~~P~l~~~~~~------~~~~~~~~t~D~---~piIg~~p~~~~l~va~G~~g~G~ 343 (380)
T TIGR01377 283 DIEDVQILRKFVRDHLPGLNGEPKK------GEVCMYTNTPDE---HFVIDLHPKYDNVVIGAGFSGHGF 343 (380)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCcce------eeEEEeccCCCC---CeeeecCCCCCCEEEEecCCccce
Confidence 3456788899999999986532221 122334456654 44 33446799999875544443
No 43
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=48.13 E-value=37 Score=28.32 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=17.9
Q ss_pred CCCEEEecCccccCcccceecc
Q 034492 58 VKNFFLAGSYTKQIVWKEQLCL 79 (93)
Q Consensus 58 ~~nLfLAGDwt~t~~pAt~~~~ 79 (93)
..++|||||-.++-.|..+.++
T Consensus 339 ~gRVfLaGDAAH~hsP~~GQGm 360 (634)
T PRK08294 339 LPRVFIAGDACHTHSAKAGQGM 360 (634)
T ss_pred cCCEEEEecCccCCCCccccch
Confidence 3689999999999888776554
No 44
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=47.39 E-value=14 Score=28.44 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=17.6
Q ss_pred CCCCCCCCCEEEecCccccCcc
Q 034492 52 RDQKTPVKNFFLAGSYTKQIVW 73 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t~~p 73 (93)
+..+|..+|+|.|||-+...++
T Consensus 261 ~~~~ts~~~IyA~GD~a~~~~~ 282 (396)
T PRK09754 261 EACRTCDPAIFAGGDVAITRLD 282 (396)
T ss_pred CCCccCCCCEEEccceEeeeCC
Confidence 3456889999999999876665
No 45
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=46.97 E-value=15 Score=29.50 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=16.5
Q ss_pred CCCCCCCCCEEEecCccccCc
Q 034492 52 RDQKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t~~ 72 (93)
+..+|..+|+|.|||-+...+
T Consensus 470 ~~l~Ts~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 470 ARGATSVPGVFAAGDCTTVPY 490 (517)
T ss_pred cCCCCCCCCEEECccccCCCC
Confidence 345688999999999987543
No 46
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=45.81 E-value=15 Score=29.27 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEecCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t 70 (93)
...+|+++|||-||+...+
T Consensus 340 ~~~~t~I~GLyAaGE~a~~ 358 (488)
T TIGR00551 340 DHGRTTVPGLYAIGEVACT 358 (488)
T ss_pred CCCcccCCCEEECcccccc
Confidence 4556899999999998754
No 47
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=45.62 E-value=22 Score=24.70 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCceecCCCCCCCCCCCCCCCCCCEEEecC
Q 034492 37 GQSLCGEGPGKDPFRRDQKTPVKNFFLAGS 66 (93)
Q Consensus 37 ~~Atf~~~PG~~~~RP~~~T~~~nLfLAGD 66 (93)
+=.+..-+||.-..|+-..+++.-|||.||
T Consensus 41 PV~S~~ltpG~V~~r~l~~pg~~plFlVGd 70 (142)
T PF11072_consen 41 PVRSPELTPGKVERRPLQLPGLQPLFLVGD 70 (142)
T ss_pred CccCCCcCcCccccceecCCCCCCEEEEcC
Confidence 344566778988889888888999999998
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=42.94 E-value=18 Score=25.83 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.9
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|..+|+|.+||-+..
T Consensus 261 ~~t~~~~vya~GD~~~~ 277 (300)
T TIGR01292 261 MRTSVPGVFAAGDVRDK 277 (300)
T ss_pred CccCCCCEEEeecccCc
Confidence 46788999999997763
No 49
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=41.37 E-value=19 Score=29.76 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=18.2
Q ss_pred CCCCCCCCCEEEecCccccC-cccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQI-VWKE 75 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t~-~pAt 75 (93)
-..+|++||||-||+-..++ +.|+
T Consensus 364 ~~~~t~i~GLyAaGe~a~~G~hGan 388 (580)
T TIGR01176 364 INCETRIKGLFAVGECASVGLHGAN 388 (580)
T ss_pred cCcccccCCeEeeecccccCcCCCc
Confidence 35568999999999987554 5554
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=40.73 E-value=23 Score=28.55 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=15.9
Q ss_pred CCCCCCCCEEEecCccccCc
Q 034492 53 DQKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t~~ 72 (93)
..+|..+|+|.|||-+...+
T Consensus 472 ~~~Ts~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 472 RGRTSVPGIFAAGDVTTVPY 491 (515)
T ss_pred CCCCCCCCEEEcccccCCcc
Confidence 35678999999999887544
No 51
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=37.75 E-value=43 Score=28.49 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCCCCCceeeEEEEEeCCcee-c-CCCCCCCCCCCCCC-CCCCEEEecCc
Q 034492 10 RRVAKQVLALFPSSQGLEVIWSSFVKIGQSLC-G-EGPGKDPFRRDQKT-PVKNFFLAGSY 67 (93)
Q Consensus 10 ~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf-~-~~PG~~~~RP~~~T-~~~nLfLAGDw 67 (93)
..|..++-+-.|.+..+.+ .|--.|.= - +.|-. ..|+-.| -++|||+||-.
T Consensus 315 ~dVQ~~~irsipGlEna~i-----~rpgYAIEYD~v~p~q--L~~tLEtK~I~GLf~AGQI 368 (621)
T COG0445 315 EDVQEQIIRSIPGLENAEI-----LRPGYAIEYDYVDPRQ--LKPTLETKKIKGLFFAGQI 368 (621)
T ss_pred HHHHHHHHHhCccccccee-----eccceeeeecccChhh--cccchhhceecceEEcccc
Confidence 3566777788887655554 44333321 1 22322 6788888 68999999943
No 52
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=37.34 E-value=31 Score=28.88 Aligned_cols=22 Identities=9% Similarity=0.085 Sum_probs=16.9
Q ss_pred CCCCCCCCEEEecCccccCccc
Q 034492 53 DQKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t~~pA 74 (93)
..+|.++|||-||+-....+-|
T Consensus 414 ~~~T~i~GLyAaGE~~~g~HGa 435 (640)
T PRK07573 414 NLMSTIPGLFVIGEANFSDHGA 435 (640)
T ss_pred CCccccCCEEECccccccCCCc
Confidence 4568999999999965445666
No 53
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=37.19 E-value=24 Score=28.60 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.2
Q ss_pred CCCCCCCEEEecCccccCc
Q 034492 54 QKTPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t~~ 72 (93)
.+|.++|+|-+||.+...+
T Consensus 298 ~~Tnvp~IyA~GDV~~~~~ 316 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGPM 316 (454)
T ss_pred cccCCCCEEEeeccCCCcc
Confidence 3466899999999987653
No 54
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=36.29 E-value=46 Score=28.27 Aligned_cols=54 Identities=19% Similarity=0.337 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCC-CCCCEEEecCccc
Q 034492 11 RVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKT-PVKNFFLAGSYTK 69 (93)
Q Consensus 11 ~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T-~~~nLfLAGDwt~ 69 (93)
.+..++-+..|....++++..-...| =.|+. |-. ..|.-+| .++|||+||=..-
T Consensus 316 ~~Q~~~~r~ipGle~a~i~r~gy~ie--yd~i~-p~~--L~~~Le~k~~~~lf~AGQinG 370 (618)
T PRK05192 316 DVQLEMLRSIPGLENAEILRPGYAIE--YDYVD-PRQ--LKPTLETKKIKGLFFAGQING 370 (618)
T ss_pred HHHHHHHhcCcCccceeEeeccccee--ecccC-hhh--cchhheecCCCCeEECcccCC
Confidence 45566777888765555533222211 12333 544 5777777 5799999996554
No 55
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=36.19 E-value=28 Score=27.49 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.8
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.+||-+.
T Consensus 411 ~~Ts~~~VfA~GD~~~ 426 (449)
T TIGR01316 411 QRTSIPGVFAGGDIIL 426 (449)
T ss_pred CccCCCCEEEecCCCC
Confidence 4688999999999875
No 56
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.19 E-value=24 Score=28.54 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=16.6
Q ss_pred CCCCCCCCEEEecCccccCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQIVWKE 75 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t~~pAt 75 (93)
..+|+|+|||-||+-+..-+.++
T Consensus 356 ~~~t~IpGLyAaGE~~gg~hG~~ 378 (543)
T PRK06263 356 DCETNIPGLFACGEVAGGVHGAN 378 (543)
T ss_pred CCcccCCCeEeccccccCCCCCC
Confidence 44589999999999764434443
No 57
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=36.00 E-value=1.2e+02 Score=22.60 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC--CCCCCEEEecCccc
Q 034492 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK--TPVKNFFLAGSYTK 69 (93)
Q Consensus 6 eel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~--T~~~nLfLAGDwt~ 69 (93)
++..+.+++.+.++||.... + .+.....+..+|. ..|-.. ...+|||+|.=+-.
T Consensus 285 ~~~~~~l~~~~~~~~P~~~~--~-----~~~~~g~~~~t~D---~~P~ig~~~~~~gl~~~~G~~g 340 (376)
T PRK11259 285 AEDGAELRPFLRNYLPGVGP--C-----LRGAACTYTNTPD---EHFIIDTLPGHPNVLVASGCSG 340 (376)
T ss_pred HHHHHHHHHHHHHHCCCCCc--c-----ccceEEecccCCC---CCceeecCCCCCCEEEEecccc
Confidence 56788899999999996432 2 2222223334554 355332 23799999864443
No 58
>PLN02852 ferredoxin-NADP+ reductase
Probab=35.66 E-value=28 Score=28.48 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.9
Q ss_pred CCCCCCEEEecCcccc
Q 034492 55 KTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 55 ~T~~~nLfLAGDwt~t 70 (93)
.|+++|+|.|||..+.
T Consensus 383 ~T~ipGvyAaGDi~~G 398 (491)
T PLN02852 383 ADTEPGLYVVGWLKRG 398 (491)
T ss_pred ccCCCCEEEeeeEecC
Confidence 4889999999998874
No 59
>PRK12831 putative oxidoreductase; Provisional
Probab=35.05 E-value=26 Score=27.95 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.9
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.|||-+.
T Consensus 422 ~~Ts~pgVfAaGD~~~ 437 (464)
T PRK12831 422 GLTSKEGVFAGGDAVT 437 (464)
T ss_pred CccCCCCEEEeCCCCC
Confidence 5788999999999875
No 60
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=34.46 E-value=15 Score=26.46 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCC--CCCCCCCCEEEecCcc
Q 034492 9 IRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRR--DQKTPVKNFFLAGSYT 68 (93)
Q Consensus 9 ~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP--~~~T~~~nLfLAGDwt 68 (93)
++.+++.+.+++|......+...++ .....+|+. +| +..+..+|||+|+-+-
T Consensus 288 ~~~l~~~~~~~~p~l~~~~v~~~~~-----g~r~~t~d~---~p~ig~~~~~~~l~~~~g~~ 341 (358)
T PF01266_consen 288 IDELLERLARLLPGLGDAEVVRSWA-----GIRPFTPDG---RPIIGELPGSPNLYLAGGHG 341 (358)
T ss_dssp HHHHHHHHHHHSGGGGGSEEEEEEE-----EEEEEETTS---ECEEEEESSEEEEEEEECET
T ss_pred HHHhHHHHHHHHHHhhhcccccccc-----ceeeeccCC---CeeeeecCCCCCEEEEECCC
Confidence 6789999999999865555543322 222234443 34 2224588999996443
No 61
>PRK08071 L-aspartate oxidase; Provisional
Probab=34.27 E-value=28 Score=28.12 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.7
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|+++|||-||+-..+
T Consensus 340 ~~~t~I~GLyAaGE~a~~ 357 (510)
T PRK08071 340 DGETSIPGLYAIGEVACT 357 (510)
T ss_pred CCcccCCCeEEccccccc
Confidence 445899999999998753
No 62
>PRK07804 L-aspartate oxidase; Provisional
Probab=34.20 E-value=29 Score=28.26 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|+++|||-|||-+.+
T Consensus 365 ~~~t~i~GLyAaGe~~~~ 382 (541)
T PRK07804 365 YGRTSVPGLYAAGEVACT 382 (541)
T ss_pred CCcccCCCeEEccccccc
Confidence 446899999999998753
No 63
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=34.07 E-value=28 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.7
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|+++|||-|||-..+
T Consensus 366 ~~~t~i~GLyAaGe~~~~ 383 (582)
T PRK09231 366 NCETRIKGLFAVGECSSV 383 (582)
T ss_pred CCccccCCEEeccccccc
Confidence 456899999999997653
No 64
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=33.97 E-value=28 Score=23.20 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=21.3
Q ss_pred CCCCCEEEecCccccCccccee---ccccCCcccccCCCC
Q 034492 56 TPVKNFFLAGSYTKQIVWKEQL---CLVDKPQATYAMPGK 92 (93)
Q Consensus 56 T~~~nLfLAGDwt~t~~pAt~~---~~~~~~~~~~~~~~~ 92 (93)
...+-|++|||.+..+-...-. -....+...|.++|.
T Consensus 25 ~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GN 64 (166)
T cd07404 25 PDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGN 64 (166)
T ss_pred CCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEEeCCC
Confidence 3466799999999754332111 122233446777774
No 65
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.33 E-value=26 Score=26.66 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
-+|+.+|+|.|||-...
T Consensus 261 l~ts~~~VyA~GD~a~~ 277 (377)
T PRK04965 261 LQTSAPDIYALGDCAEI 277 (377)
T ss_pred cccCCCCEEEeeecEeE
Confidence 46889999999998763
No 66
>PRK09077 L-aspartate oxidase; Provisional
Probab=32.86 E-value=31 Score=27.99 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=15.2
Q ss_pred CCCCCCCCCEEEecCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t 70 (93)
-..+|+|+|||-||+-..+
T Consensus 360 ~~~~t~I~GLyAaGE~a~~ 378 (536)
T PRK09077 360 LHGRTDLDGLYAIGEVSYT 378 (536)
T ss_pred CCCccccCCEEeccccccc
Confidence 3456899999999998743
No 67
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=32.62 E-value=28 Score=27.27 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=14.5
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|..+|+|.+||-+.
T Consensus 288 ~~~Ts~~~IyA~GD~~~ 304 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTD 304 (446)
T ss_pred CCccCCCCEEEeeccCC
Confidence 45688999999999985
No 68
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=32.55 E-value=2.2e+02 Score=21.58 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCC-CCCCCCEEEecCcc
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQ-KTPVKNFFLAGSYT 68 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~-~T~~~nLfLAGDwt 68 (93)
+.+..+.+.+.+.+++|......+ .+..-.....+|.. .|-. ..+.+|||+|.=+-
T Consensus 308 ~~~~~~~l~~~~~~~~P~l~~~~~-----~~~w~G~~~~t~D~---~PiIg~~~~~gl~~a~G~~ 364 (407)
T TIGR01373 308 NLPTLEHVLAAILEMFPILSRVRM-----LRSWGGIVDVTPDG---SPIIGKTPLPNLYLNCGWG 364 (407)
T ss_pred CHHHHHHHHHHHHHhCCCcCCCCe-----EEEeccccccCCCC---CceeCCCCCCCeEEEeccC
Confidence 355678889999999997654444 33333334455543 4422 12368999986443
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=32.05 E-value=31 Score=28.24 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.9
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.|||-+.
T Consensus 564 ~~Ts~~gVfAaGD~~~ 579 (604)
T PRK13984 564 GQTSIPWLFAGGDIVH 579 (604)
T ss_pred CccCCCCEEEecCcCC
Confidence 4688999999999875
No 70
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=31.91 E-value=30 Score=27.49 Aligned_cols=16 Identities=25% Similarity=0.384 Sum_probs=13.9
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.+||-+.
T Consensus 426 ~~Ts~~gVfa~GD~~~ 441 (471)
T PRK12810 426 YQTSNPKVFAAGDMRR 441 (471)
T ss_pred ccCCCCCEEEccccCC
Confidence 4588999999999886
No 71
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=31.36 E-value=20 Score=27.47 Aligned_cols=68 Identities=12% Similarity=-0.038 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceec
Q 034492 5 NDEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLC 78 (93)
Q Consensus 5 deel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~ 78 (93)
+.++.+-+...+.-.+|+.-...... .+.+ ..+..-|.+ ..|......+|+.+-||-..+.+|-|+-+
T Consensus 82 ~g~l~~yl~~~v~P~LP~~lr~~f~~--al~~--~rirsMPn~--~lp~~~~~~~G~vllGDA~nmrHPLTGgG 149 (276)
T PF08491_consen 82 NGELKEYLREVVAPQLPEELRPSFEK--ALED--GRIRSMPNS--FLPASPNWKPGVVLLGDAANMRHPLTGGG 149 (276)
T ss_pred chHHHHHHHHHHHhhchHHHHHHHHH--Hhcc--CCcceeccc--ccCCCCCCCCCEEEEehhhcCcCCccccc
Confidence 45666666666666666310000000 0111 134456665 57777777799999999999999988754
No 72
>PRK07512 L-aspartate oxidase; Provisional
Probab=31.25 E-value=31 Score=27.90 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.0
Q ss_pred CCCCCCCCCEEEecCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t 70 (93)
...+|+|+|||-||+-..+
T Consensus 348 ~~~~t~I~GLyAaGE~a~~ 366 (513)
T PRK07512 348 ADGRSSLPGLWAAGEVAST 366 (513)
T ss_pred CCCccccCCEEeccccccc
Confidence 3456899999999997643
No 73
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=31.24 E-value=82 Score=23.84 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q 034492 6 DEIIRRVAKQVLALFPSSQ 24 (93)
Q Consensus 6 eel~~~v~~eL~~~~P~~~ 24 (93)
.+.++.+.+.+.+++|...
T Consensus 255 ~~~~~~~~~~~~~~~P~l~ 273 (381)
T TIGR03197 255 EADHAENLERLAECLPALA 273 (381)
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 3446678888999999754
No 74
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=31.15 E-value=30 Score=27.31 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.8
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||.+.
T Consensus 291 ~~T~~p~IyAiGD~~~ 306 (450)
T TIGR01421 291 QNTNVPGIYALGDVVG 306 (450)
T ss_pred CcCCCCCEEEEEecCC
Confidence 5678999999999875
No 75
>PRK06116 glutathione reductase; Validated
Probab=31.07 E-value=31 Score=26.96 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.5
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 291 ~~Ts~~~IyA~GD~~~ 306 (450)
T PRK06116 291 QNTNVPGIYAVGDVTG 306 (450)
T ss_pred CCcCCCCEEEEeecCC
Confidence 3688999999999874
No 76
>PLN02507 glutathione reductase
Probab=30.58 E-value=34 Score=27.51 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=15.1
Q ss_pred CCCCCCCCCEEEecCccc
Q 034492 52 RDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~ 69 (93)
+..+|+.+|+|.+||-+.
T Consensus 324 ~~~~Ts~p~IyAiGDv~~ 341 (499)
T PLN02507 324 EYSRTNIPSIWAIGDVTN 341 (499)
T ss_pred CCCcCCCCCEEEeeEcCC
Confidence 345788999999999985
No 77
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=30.49 E-value=28 Score=27.90 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.7
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.|||-+.
T Consensus 440 ~~Ts~~gVfAaGD~~~ 455 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRR 455 (485)
T ss_pred ceECCCCEEEeeccCC
Confidence 4688999999999864
No 78
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=30.49 E-value=32 Score=28.57 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.8
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.|||-+.
T Consensus 613 ~~Ts~~gVfAaGD~~~ 628 (654)
T PRK12769 613 YQTSNPKIFAGGDAVR 628 (654)
T ss_pred cccCCCCEEEcCCcCC
Confidence 3689999999999875
No 79
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=30.41 E-value=36 Score=26.46 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.4
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|+.+|+|.+||-+..
T Consensus 280 ~~Ts~~~IyA~GD~~~~ 296 (441)
T PRK08010 280 LHTTADNIWAMGDVTGG 296 (441)
T ss_pred cccCCCCEEEeeecCCC
Confidence 46889999999998864
No 80
>PRK07846 mycothione reductase; Reviewed
Probab=30.40 E-value=32 Score=27.17 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.7
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 288 ~~Ts~p~IyA~GD~~~ 303 (451)
T PRK07846 288 QRTSAEGVFALGDVSS 303 (451)
T ss_pred cccCCCCEEEEeecCC
Confidence 4578999999999885
No 81
>PRK08275 putative oxidoreductase; Provisional
Probab=29.81 E-value=17 Score=29.57 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEecCccccC
Q 034492 53 DQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t~ 71 (93)
..+|.++|||.|||-..++
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~ 382 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVP 382 (554)
T ss_pred CCccCCCCEEECcccCCch
Confidence 4578999999999965443
No 82
>PRK08401 L-aspartate oxidase; Provisional
Probab=29.26 E-value=36 Score=27.01 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.3
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|+++|||-||+-+.
T Consensus 318 ~~~t~IpGLyAaGE~a~ 334 (466)
T PRK08401 318 FYRTGIKNLYAIGEAAS 334 (466)
T ss_pred CCcccCCCEEECccccc
Confidence 45689999999999875
No 83
>PRK13748 putative mercuric reductase; Provisional
Probab=29.17 E-value=33 Score=27.55 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|+.+|+|.+||-+..
T Consensus 391 ~~Ts~~~IyA~GD~~~~ 407 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQ 407 (561)
T ss_pred cccCCCCEEEeeecCCC
Confidence 46889999999999753
No 84
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=28.76 E-value=44 Score=26.59 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.6
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 427 ~~T~~~gVfa~GD~~~ 442 (467)
T TIGR01318 427 YQTTNPKIFAGGDAVR 442 (467)
T ss_pred ccCCCCCEEEECCcCC
Confidence 3578999999999875
No 85
>PRK07395 L-aspartate oxidase; Provisional
Probab=28.56 E-value=37 Score=27.88 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCCCCCCCCEEEecCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t 70 (93)
-..+|+++|||-||+-+.+
T Consensus 354 ~~~~t~I~GLyAaGE~a~~ 372 (553)
T PRK07395 354 LNNQTSIPGLYAVGETAST 372 (553)
T ss_pred CCCcccCCCEEECcccccc
Confidence 4556899999999998753
No 86
>PRK06175 L-aspartate oxidase; Provisional
Probab=28.51 E-value=40 Score=26.55 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.8
Q ss_pred CCCCCCCCCEEEecCccc
Q 034492 52 RDQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~ 69 (93)
...+|+++|||-||.-+.
T Consensus 338 ~~~~t~i~gLYAaGE~a~ 355 (433)
T PRK06175 338 LNSKTSMKNLYAFGEVSC 355 (433)
T ss_pred CCccccCCCeEecccccc
Confidence 455599999999999865
No 87
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=28.44 E-value=25 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=21.6
Q ss_pred CCCCEEEecCccccCc-ccce---eccc-cCCcccccCCCCC
Q 034492 57 PVKNFFLAGSYTKQIV-WKEQ---LCLV-DKPQATYAMPGKN 93 (93)
Q Consensus 57 ~~~nLfLAGDwt~t~~-pAt~---~~~~-~~~~~~~~~~~~~ 93 (93)
..+-++++||.+..+- +... +... ....-.|++||.+
T Consensus 31 ~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNh 72 (224)
T cd07388 31 GADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQ 72 (224)
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 3556999999999762 3222 1112 2223468888864
No 88
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=28.41 E-value=36 Score=19.91 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.5
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
..++.|-|-|.|||...
T Consensus 19 ~~~~~p~i~L~G~WL~~ 35 (57)
T PF08845_consen 19 WYRPVPEIRLKGKWLEE 35 (57)
T ss_pred ccccCceEEEchhhhHH
Confidence 34567889999999974
No 89
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=27.86 E-value=36 Score=26.89 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=13.6
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 291 ~~Ts~~~IyA~GD~~~ 306 (452)
T TIGR03452 291 GRTSARGVWALGDVSS 306 (452)
T ss_pred cccCCCCEEEeecccC
Confidence 4588999999999875
No 90
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=27.80 E-value=36 Score=26.94 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.3
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|..+|+|.+||-+.
T Consensus 299 ~~~Ts~~~IyA~GD~~~ 315 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTG 315 (466)
T ss_pred CcccCCCCEEEEeeccC
Confidence 35688999999999885
No 91
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=27.77 E-value=41 Score=26.87 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=21.9
Q ss_pred CCC---CCCCCCCCEEEecCccccCcccceecc
Q 034492 50 FRR---DQKTPVKNFFLAGSYTKQIVWKEQLCL 79 (93)
Q Consensus 50 ~RP---~~~T~~~nLfLAGDwt~t~~pAt~~~~ 79 (93)
.|| ..++.++|||.||+-+...-|+..-|-
T Consensus 369 ~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g 401 (422)
T PRK05329 369 LRPLDSQGGPVIENLYAAGAVLGGYDPIREGCG 401 (422)
T ss_pred cCcccCCCCeeccceEEeeehhcCCchHHhCCC
Confidence 477 233568999999999987767666553
No 92
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.42 E-value=24 Score=30.59 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=14.4
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|.++|||-|||-..+
T Consensus 369 ~~~T~v~GLfAaGE~a~~ 386 (897)
T PRK13800 369 HARTTVPGLYAAGDLACV 386 (897)
T ss_pred CCcccCCCeEechhccCc
Confidence 457899999999995543
No 93
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=27.41 E-value=1.8e+02 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=18.0
Q ss_pred CCCEEEecCccccCcccceecc
Q 034492 58 VKNFFLAGSYTKQIVWKEQLCL 79 (93)
Q Consensus 58 ~~nLfLAGDwt~t~~pAt~~~~ 79 (93)
..++||+||--+.-.|..+.++
T Consensus 298 ~gRV~L~GDAAH~~~P~~GqG~ 319 (547)
T PRK08132 298 HGRVLFAGDAAHQVSPFGARGA 319 (547)
T ss_pred cccEEEEecccccCCCcccccc
Confidence 3589999999998888777654
No 94
>PLN02815 L-aspartate oxidase
Probab=27.27 E-value=43 Score=27.89 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEecCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t 70 (93)
...+|+++|||-||+-..+
T Consensus 384 ~~~~t~IpGLyAaGE~a~~ 402 (594)
T PLN02815 384 LQGETNVQGLYAAGEVACT 402 (594)
T ss_pred CCCceecCCEEeccccccc
Confidence 4556899999999998753
No 95
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=27.26 E-value=23 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=16.5
Q ss_pred EEEecCccccCcccceecc---c-cCCcccccCCCC
Q 034492 61 FFLAGSYTKQIVWKEQLCL---V-DKPQATYAMPGK 92 (93)
Q Consensus 61 LfLAGDwt~t~~pAt~~~~---~-~~~~~~~~~~~~ 92 (93)
|.++||.+...-+...+-. + ..+.-.|++||.
T Consensus 45 viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 45 VLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred EEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 7788888854433322111 1 122336777774
No 96
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.11 E-value=40 Score=26.49 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.1
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|+.+|+|.+||-+.
T Consensus 412 ~~~Ts~~~VfA~GD~~~ 428 (457)
T PRK11749 412 TGRTSLPGVFAGGDIVT 428 (457)
T ss_pred CCccCCCCEEEeCCcCC
Confidence 35688999999999873
No 97
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=26.95 E-value=44 Score=26.05 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.1
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|..+|+|.+||-+.
T Consensus 293 ~~~ts~~~IyA~GD~~~ 309 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNG 309 (460)
T ss_pred CcccCCCCEEEEEecCC
Confidence 34678899999999975
No 98
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=26.70 E-value=30 Score=22.98 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=20.3
Q ss_pred CCCEEEecCccccCcccce---eccccCCcccccCCCC
Q 034492 58 VKNFFLAGSYTKQIVWKEQ---LCLVDKPQATYAMPGK 92 (93)
Q Consensus 58 ~~nLfLAGDwt~t~~pAt~---~~~~~~~~~~~~~~~~ 92 (93)
.+=++++||.+..+.+... ..+...+.-.|.+||.
T Consensus 24 ~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GN 61 (188)
T cd07392 24 ADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGN 61 (188)
T ss_pred CCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4459999999887655321 1112233346777774
No 99
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=26.57 E-value=46 Score=17.53 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=11.7
Q ss_pred CCCCEEEecCccccCcc
Q 034492 57 PVKNFFLAGSYTKQIVW 73 (93)
Q Consensus 57 ~~~nLfLAGDwt~t~~p 73 (93)
+.-|+|++|.--...||
T Consensus 22 ~~GNiYv~G~T~~~~fp 38 (38)
T PF06739_consen 22 SNGNIYVTGYTNGNDFP 38 (38)
T ss_pred CCCCEEEEEeecCCCCC
Confidence 45689999965544554
No 100
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=26.51 E-value=2.1e+02 Score=22.49 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC--CCCCCEEEecCccccCc
Q 034492 6 DEIIRRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK--TPVKNFFLAGSYTKQIV 72 (93)
Q Consensus 6 eel~~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~--T~~~nLfLAGDwt~t~~ 72 (93)
+...+.+.+.+.++||.....++... .......+|.. .|-.- ...+|||+|.=|...|+
T Consensus 317 ~~~~~~l~~~~~~~fP~L~~~~i~~~-----W~G~~~~t~D~---~P~iG~~~~~~gl~~a~G~~G~Gv 377 (460)
T TIGR03329 317 SPYEALLTRSLRKFFPALAEVPIAAS-----WNGPSDRSVTG---LPFFGRLNGQPNVFYGFGYSGNGV 377 (460)
T ss_pred hHHHHHHHHHHHHhCCCcCCCeeeEE-----EeceeCCCCCC---CceeeeecCCCCEEEEeCcCCCCh
Confidence 34567788889999997654444322 23344455543 44222 24689999965555544
No 101
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=26.46 E-value=37 Score=27.53 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=13.0
Q ss_pred CCCCCEEEecCcccc
Q 034492 56 TPVKNFFLAGSYTKQ 70 (93)
Q Consensus 56 T~~~nLfLAGDwt~t 70 (93)
|+|+|||-||+-..+
T Consensus 357 t~I~GLyAaGe~a~~ 371 (566)
T TIGR01812 357 TIVKGLFAAGECACV 371 (566)
T ss_pred cccCCeeeccccccc
Confidence 899999999997653
No 102
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=26.22 E-value=42 Score=25.32 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.6
Q ss_pred CCCCCCEEEecCccc
Q 034492 55 KTPVKNFFLAGSYTK 69 (93)
Q Consensus 55 ~T~~~nLfLAGDwt~ 69 (93)
+|..+|+|.+||-+.
T Consensus 312 ~t~~~~vyaiGD~~~ 326 (352)
T PRK12770 312 MTSREGVFAAGDVVT 326 (352)
T ss_pred ccCCCCEEEEccccc
Confidence 477899999999764
No 103
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=26.13 E-value=38 Score=26.42 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.2
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 298 ~~t~~~~IyAiGD~~~ 313 (461)
T PRK05249 298 YQTAVPHIYAVGDVIG 313 (461)
T ss_pred cccCCCCEEEeeecCC
Confidence 3578999999999763
No 104
>PRK14727 putative mercuric reductase; Provisional
Probab=26.09 E-value=38 Score=26.90 Aligned_cols=16 Identities=19% Similarity=0.432 Sum_probs=13.7
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.+||-+.
T Consensus 309 ~~Ts~~~IyA~GD~~~ 324 (479)
T PRK14727 309 METSAPDIYAAGDCSD 324 (479)
T ss_pred eecCCCCEEEeeecCC
Confidence 4688999999999874
No 105
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=26.06 E-value=39 Score=26.48 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.6
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|+.+|+|.+||-+..
T Consensus 264 ~~~t~~~~IyA~GD~~~~ 281 (438)
T PRK13512 264 KFETNVPNIYAIGDIITS 281 (438)
T ss_pred CcccCCCCEEEeeeeEEe
Confidence 356789999999999863
No 106
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=26.02 E-value=43 Score=26.26 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.2
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|..+|+|.+||-+..
T Consensus 292 ~~Ts~~~VyAiGD~~~~ 308 (463)
T TIGR02053 292 LRTSNPGIYAAGDVTGG 308 (463)
T ss_pred ccCCCCCEEEeeecCCC
Confidence 46889999999998763
No 107
>PRK07117 acyl carrier protein; Validated
Probab=26.02 E-value=74 Score=19.47 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHHHCCCC
Q 034492 3 LPNDEIIRRVAKQVLALFPSS 23 (93)
Q Consensus 3 ~~deel~~~v~~eL~~~~P~~ 23 (93)
|++++|.+++..-|.+.+|+.
T Consensus 1 M~~~ei~~~v~~ii~e~~p~i 21 (79)
T PRK07117 1 MDKQRIFDILVRHIREVLPDL 21 (79)
T ss_pred CCHHHHHHHHHHHHHHHcCCC
Confidence 578899999999999999853
No 108
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.96 E-value=41 Score=27.72 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=16.7
Q ss_pred CCCCCCCCEEEecCccccCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQIVWKE 75 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t~~pAt 75 (93)
...|+++|||-||+-...-+.|+
T Consensus 363 ~~~t~I~GLyAaGE~~~g~hGan 385 (589)
T PRK08641 363 DQMTNIPGLFAAGECDYSYHGAN 385 (589)
T ss_pred CCCeECCCEEECcccccCCCCCC
Confidence 35789999999999654434444
No 109
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=25.78 E-value=36 Score=27.56 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCC-CCCCCEEEecCcccc
Q 034492 14 KQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQK-TPVKNFFLAGSYTKQ 70 (93)
Q Consensus 14 ~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~-T~~~nLfLAGDwt~t 70 (93)
.++-+++|...++.++..-|.. |-||+..|... -+.-+ -.-+|||+||-.|-.
T Consensus 293 krVf~mIPgLeNAefvRyGvmH--RNtfinSP~lL--~~tl~lk~~p~l~fAGQitG~ 346 (439)
T COG1206 293 KRVFRMIPGLENAEFVRYGVMH--RNTFINSPKLL--DPTLQLKKRPNLFFAGQITGV 346 (439)
T ss_pred hhhhhhcCCcchhhhhhcccee--cccccCChhhh--hHHhhcccCCCcEEeeeeecc
Confidence 3455777888788877666655 88999999752 23222 356799999977654
No 110
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=25.59 E-value=39 Score=26.74 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.5
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|+.+|+|.+||-+..
T Consensus 301 ~~Ts~~~IyA~GD~~~~ 317 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSG 317 (466)
T ss_pred eecCCCCEEEeeecCCC
Confidence 46889999999998853
No 111
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.53 E-value=43 Score=27.50 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCCCEEEecCcccc
Q 034492 56 TPVKNFFLAGSYTKQ 70 (93)
Q Consensus 56 T~~~nLfLAGDwt~t 70 (93)
|+++|||-||+-+.+
T Consensus 373 t~IpGLyAaGE~a~~ 387 (583)
T PRK08205 373 TVVPGLYAAGECACV 387 (583)
T ss_pred CCcCCeeeccccccC
Confidence 789999999998763
No 112
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.53 E-value=1.8e+02 Score=22.19 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCCCCceeeEEEEEeCCceecCCCCCCCCCCCCCCCCCCEEEecCccccCcccceecc
Q 034492 10 RRVAKQVLALFPSSQGLEVIWSSFVKIGQSLCGEGPGKDPFRRDQKTPVKNFFLAGSYTKQIVWKEQLCL 79 (93)
Q Consensus 10 ~~v~~eL~~~~P~~~~a~v~~~~Vire~~Atf~~~PG~~~~RP~~~T~~~nLfLAGDwt~t~~pAt~~~~ 79 (93)
+..+.+|.+.+|.... +..........+.+.. . +...+--.++++|+||--++-.|-.+.++
T Consensus 237 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~pl~---~---~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~ 298 (387)
T COG0654 237 EEFLRELQRRLGERDP--LGRVTLVSSRSAFPLS---L---RVAERYRRGRVVLIGDAAHAMHPLAGQGA 298 (387)
T ss_pred HHHHHHHHHhcCcccc--cceEEEcccccccccc---c---hhhhheecCcEEEEeeccccCCCccccch
Confidence 3457788888886422 2222233322222222 1 22122223779999999998888766553
No 113
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=25.43 E-value=40 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.6
Q ss_pred CCCCCCCCCEEEecCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t 70 (93)
...+|.++|||-|||-..+
T Consensus 389 ~~~~T~v~glyA~Ge~~~~ 407 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGG 407 (608)
T ss_pred cccccCCCCEEEeeecCCC
Confidence 4557899999999998754
No 114
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=25.38 E-value=35 Score=25.12 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=19.8
Q ss_pred CCEEEecCccccCcccce------eccccCCcccccCCCC
Q 034492 59 KNFFLAGSYTKQIVWKEQ------LCLVDKPQATYAMPGK 92 (93)
Q Consensus 59 ~nLfLAGDwt~t~~pAt~------~~~~~~~~~~~~~~~~ 92 (93)
.=++++||++..+.+... +....++--.|+.+|.
T Consensus 82 DlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V~GN 121 (271)
T PRK11340 82 DLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFACFGN 121 (271)
T ss_pred CEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEecCC
Confidence 458999999974433321 2222333347888774
No 115
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=25.37 E-value=44 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCCCCCCEEEecCccccCccc
Q 034492 54 QKTPVKNFFLAGSYTKQIVWK 74 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t~~pA 74 (93)
..|+++|||-||+-...-+-|
T Consensus 401 ~~t~IpGLYAaGE~agg~hGa 421 (626)
T PRK07803 401 GAATVPGLFAAGECAGGMHGS 421 (626)
T ss_pred CeeecCCeeEccccccccCcC
Confidence 358999999999975444444
No 116
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=25.27 E-value=22 Score=27.11 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=11.6
Q ss_pred CCCCCCCEEEecCcc
Q 034492 54 QKTPVKNFFLAGSYT 68 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt 68 (93)
..++|+|||.||+-+
T Consensus 388 ~g~pIpGLyAaGe~~ 402 (417)
T PF00890_consen 388 DGQPIPGLYAAGEAA 402 (417)
T ss_dssp TCEEEEEEEE-SCCE
T ss_pred CCCEeCCEEEEEccc
Confidence 334899999999888
No 117
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=25.00 E-value=48 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|..+|+|.+||-+..
T Consensus 269 ~~~t~~~~IyA~GD~~~~ 286 (444)
T PRK09564 269 YGETSIENIYAAGDCATI 286 (444)
T ss_pred CcccCCCCEEEeeeEEEE
Confidence 346789999999999864
No 118
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=24.92 E-value=49 Score=27.44 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=17.2
Q ss_pred CCCCCCCCCEEEecCccccCcccc
Q 034492 52 RDQKTPVKNFFLAGSYTKQIVWKE 75 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t~~pAt 75 (93)
...+|.++|||-||+-...-+-|+
T Consensus 377 ~~~~t~i~gL~a~Ge~~~~~hg~n 400 (603)
T TIGR01811 377 YDQMTNIPGLFAAGECDFSQHGAN 400 (603)
T ss_pred CCCcccCCCEEECcccccCcCCCc
Confidence 455789999999999654445444
No 119
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=24.80 E-value=45 Score=27.71 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.6
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.+||-+.
T Consensus 596 ~~Ts~~gVfA~GD~~~ 611 (639)
T PRK12809 596 TQTHLKKVFAGGDAVH 611 (639)
T ss_pred cccCCCCEEEcCCCCC
Confidence 3688999999999875
No 120
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.73 E-value=47 Score=27.47 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=13.4
Q ss_pred CCCCCCEEEecCcccc
Q 034492 55 KTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 55 ~T~~~nLfLAGDwt~t 70 (93)
.|+|+|||-||+-..+
T Consensus 382 ~t~I~GLyAaGE~a~~ 397 (598)
T PRK09078 382 DAVVPGLMAVGEAACV 397 (598)
T ss_pred CCccCceeeccccccc
Confidence 3789999999998753
No 121
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=24.40 E-value=44 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.3
Q ss_pred CCCCCCCCCEEEecCccccC
Q 034492 52 RDQKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 52 P~~~T~~~nLfLAGDwt~t~ 71 (93)
...+|.++|||-|||-..++
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~ 419 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGAS 419 (614)
T ss_pred cCCccccCCEEeceecccCc
Confidence 34468999999999966544
No 122
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.84 E-value=53 Score=26.98 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=14.8
Q ss_pred CCCCCEEEecCcccc-Ccccc
Q 034492 56 TPVKNFFLAGSYTKQ-IVWKE 75 (93)
Q Consensus 56 T~~~nLfLAGDwt~t-~~pAt 75 (93)
|+|||||-||+-..+ .+-|+
T Consensus 360 t~IpGLYAaGE~a~~g~hGan 380 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGAN 380 (570)
T ss_pred CccCCeeecccccccCCCCcc
Confidence 589999999998753 34443
No 123
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=23.78 E-value=46 Score=26.66 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=13.8
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 306 ~~Ts~p~IyA~GDv~~ 321 (484)
T TIGR01438 306 EQTNVPYIYAVGDILE 321 (484)
T ss_pred cccCCCCEEEEEEecC
Confidence 5588999999999875
No 124
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=23.01 E-value=64 Score=27.33 Aligned_cols=16 Identities=6% Similarity=0.414 Sum_probs=13.7
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.|||-+.
T Consensus 711 ~~Ts~~gVfA~GD~~~ 726 (752)
T PRK12778 711 MQSSIPGIYAGGDIVR 726 (752)
T ss_pred CCCCCCCEEEeCCccC
Confidence 3688999999999875
No 125
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=22.90 E-value=53 Score=25.75 Aligned_cols=27 Identities=19% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCCCCCCCCCEEEecCccccCccccee
Q 034492 51 RRDQKTPVKNFFLAGSYTKQIVWKEQL 77 (93)
Q Consensus 51 RP~~~T~~~nLfLAGDwt~t~~pAt~~ 77 (93)
.=.-+|.++++|-|||--.+.|+.+|+
T Consensus 303 dd~m~tslpdvFa~gDvctt~~~~s~~ 329 (334)
T KOG2755|consen 303 DDAMETSLPDVFAAGDVCTTTWEPSTL 329 (334)
T ss_pred hhhccccccceeeecceeccCCCCchh
Confidence 345578999999999998899998875
No 126
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=22.80 E-value=55 Score=26.80 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=12.6
Q ss_pred CCCCCEEEecCccc
Q 034492 56 TPVKNFFLAGSYTK 69 (93)
Q Consensus 56 T~~~nLfLAGDwt~ 69 (93)
|+|+|||-||+-+.
T Consensus 351 t~IpGLyAaGE~a~ 364 (565)
T TIGR01816 351 QIVPGLYAAGEAAC 364 (565)
T ss_pred CccCCeeecccccc
Confidence 78999999999875
No 127
>PRK06370 mercuric reductase; Validated
Probab=22.78 E-value=53 Score=25.78 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.0
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|..+|+|.+||-+..
T Consensus 297 l~t~~~~IyAiGD~~~~ 313 (463)
T PRK06370 297 LRTTNPGIYAAGDCNGR 313 (463)
T ss_pred CcCCCCCEEEeeecCCC
Confidence 46789999999998753
No 128
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=22.72 E-value=52 Score=25.55 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.9
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|..+|+|.+||-+.
T Consensus 278 ~~~t~~~~IyaiGD~~~ 294 (438)
T PRK07251 278 YCQTSVPGVFAVGDVNG 294 (438)
T ss_pred CcccCCCCEEEeeecCC
Confidence 35688999999999764
No 129
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=22.70 E-value=51 Score=26.53 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.6
Q ss_pred CCCCCCCCEEEecCcccc
Q 034492 53 DQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~t 70 (93)
..+|..+|+|.+||-+..
T Consensus 313 ~l~Ts~~~IyA~GDv~~~ 330 (486)
T TIGR01423 313 FSRTNVPNIYAIGDVTDR 330 (486)
T ss_pred CCcCCCCCEEEeeecCCC
Confidence 346889999999998753
No 130
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.62 E-value=52 Score=27.18 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=13.0
Q ss_pred CCCCCEEEecCcccc
Q 034492 56 TPVKNFFLAGSYTKQ 70 (93)
Q Consensus 56 T~~~nLfLAGDwt~t 70 (93)
|+|+|||-||+-..+
T Consensus 378 t~IpGLYAaGE~a~~ 392 (588)
T PRK08958 378 VVVPGLFAVGEIACV 392 (588)
T ss_pred CccCCeEeccccccc
Confidence 789999999998763
No 131
>PRK14694 putative mercuric reductase; Provisional
Probab=22.58 E-value=50 Score=26.03 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.3
Q ss_pred CCCCCCCEEEecCcccc
Q 034492 54 QKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t 70 (93)
.+|..+|+|.+||-+..
T Consensus 298 ~~Ts~~~IyA~GD~~~~ 314 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQ 314 (468)
T ss_pred cccCCCCEEEEeecCCC
Confidence 46889999999998753
No 132
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.40 E-value=54 Score=26.85 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.9
Q ss_pred CCCCCEEEecCcccc
Q 034492 56 TPVKNFFLAGSYTKQ 70 (93)
Q Consensus 56 T~~~nLfLAGDwt~t 70 (93)
|+|+|||-||+-+.+
T Consensus 368 t~I~GLyAaGE~a~~ 382 (575)
T PRK05945 368 GLVEGFFAAGECACV 382 (575)
T ss_pred CccCCeEeeeccccc
Confidence 589999999998764
No 133
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.38 E-value=60 Score=28.86 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=14.0
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+++|+|.|||.+.
T Consensus 716 ~~Ts~pgVFAaGDv~~ 731 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVT 731 (1006)
T ss_pred cCCCCCCEEEecCcCC
Confidence 4689999999999875
No 134
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.26 E-value=59 Score=26.51 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.2
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.|||-+.
T Consensus 269 ~~Ts~p~IyAaGDv~~ 284 (555)
T TIGR03143 269 METNVPGVYAAGDLRP 284 (555)
T ss_pred cccCCCCEEEceeccC
Confidence 3578999999999764
No 135
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=22.24 E-value=58 Score=26.71 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=16.2
Q ss_pred CCCCC-CCCEEEecCcccc-Ccccc
Q 034492 53 DQKTP-VKNFFLAGSYTKQ-IVWKE 75 (93)
Q Consensus 53 ~~~T~-~~nLfLAGDwt~t-~~pAt 75 (93)
..+|+ ++|||-||+-..+ -+-|+
T Consensus 354 ~~~t~~IpGLyAaGE~a~~g~hGan 378 (566)
T PRK06452 354 DGRNPDIVGLFSAGEAACVSVHGAN 378 (566)
T ss_pred CCCcCCcCCeEecccccccCCCCcc
Confidence 34575 9999999998764 34443
No 136
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=22.10 E-value=1.7e+02 Score=22.06 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=18.6
Q ss_pred CCCCEEEecCccccCcccceecc
Q 034492 57 PVKNFFLAGSYTKQIVWKEQLCL 79 (93)
Q Consensus 57 ~~~nLfLAGDwt~t~~pAt~~~~ 79 (93)
.-.+++|+||-.++-.|..+.++
T Consensus 280 ~~~rv~LiGDAAH~~~P~~GqG~ 302 (392)
T PRK08773 280 VSGRVLTLGDAAHVVHPLAGQGV 302 (392)
T ss_pred cCCcEEEEechhhcCCCchhchh
Confidence 34689999999999888877654
No 137
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=22.06 E-value=55 Score=25.75 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.6
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 299 ~~Ts~p~IyAiGD~~~ 314 (466)
T PRK07818 299 MRTNVPHIYAIGDVTA 314 (466)
T ss_pred cccCCCCEEEEeecCC
Confidence 4578899999999875
No 138
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=22.02 E-value=56 Score=25.88 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.7
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 310 ~~Ts~~~VyA~GD~~~ 325 (475)
T PRK06327 310 CRTNVPNVYAIGDVVR 325 (475)
T ss_pred CccCCCCEEEEEeccC
Confidence 4588999999999875
No 139
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=21.76 E-value=53 Score=25.32 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.7
Q ss_pred CCCCCCCEEEecCccccC
Q 034492 54 QKTPVKNFFLAGSYTKQI 71 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~t~ 71 (93)
.+|..+|+|.+||-+...
T Consensus 257 ~~t~~~~Vya~GD~~~~~ 274 (427)
T TIGR03385 257 FQTSVPNIYAAGDVAESH 274 (427)
T ss_pred cEeCCCCEEEeeeeEEee
Confidence 357899999999998643
No 140
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=21.53 E-value=40 Score=24.52 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=16.2
Q ss_pred CCEEEecCccccCcccceecc
Q 034492 59 KNFFLAGSYTKQIVWKEQLCL 79 (93)
Q Consensus 59 ~nLfLAGDwt~t~~pAt~~~~ 79 (93)
..|++.||+++-| |.|.+|+
T Consensus 38 d~li~lGDliDRG-p~S~~vl 57 (245)
T PRK13625 38 RKLAFVGDLTDRG-PHSLRMI 57 (245)
T ss_pred CEEEEECcccCCC-cChHHHH
Confidence 4699999999954 8887766
No 141
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=21.46 E-value=62 Score=27.14 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=14.4
Q ss_pred CCCCCEEEecCcccc-Cccc
Q 034492 56 TPVKNFFLAGSYTKQ-IVWK 74 (93)
Q Consensus 56 T~~~nLfLAGDwt~t-~~pA 74 (93)
|+|+|||-||+-..+ -+-|
T Consensus 421 t~IpGLYAaGE~a~~g~hGa 440 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGA 440 (635)
T ss_pred CccCceEeeeccccccCCCC
Confidence 789999999998743 3443
No 142
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=21.46 E-value=51 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.330 Sum_probs=13.2
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 293 ~~ts~~~VyA~GD~~~ 308 (458)
T PRK06912 293 MQTNVPHIYACGDVIG 308 (458)
T ss_pred eecCCCCEEEEeecCC
Confidence 3477899999999874
No 143
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.45 E-value=1.3e+02 Score=16.56 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 034492 6 DEIIRRVAKQVL 17 (93)
Q Consensus 6 eel~~~v~~eL~ 17 (93)
+||++.+.++|.
T Consensus 25 ~EIIeA~~~eL~ 36 (40)
T PF08776_consen 25 EEIIEAIRQELS 36 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 144
>PHA02239 putative protein phosphatase
Probab=21.40 E-value=46 Score=24.35 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=20.9
Q ss_pred CCCEEEecCccccCcccceeccc------cCCcccccCCCC
Q 034492 58 VKNFFLAGSYTKQIVWKEQLCLV------DKPQATYAMPGK 92 (93)
Q Consensus 58 ~~nLfLAGDwt~t~~pAt~~~~~------~~~~~~~~~~~~ 92 (93)
...|++.||+++-+ |.+.+++- .++...|.++|.
T Consensus 30 ~d~li~lGD~iDrG-~~s~~v~~~l~~~~~~~~~~~~l~GN 69 (235)
T PHA02239 30 EETIVFLGDYVDRG-KRSKDVVNYIFDLMSNDDNVVTLLGN 69 (235)
T ss_pred CCEEEEecCcCCCC-CChHHHHHHHHHHhhcCCCeEEEECC
Confidence 35599999999964 44443321 334456666664
No 145
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.25 E-value=73 Score=24.20 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=25.2
Q ss_pred EEEecCccccC-cccceeccccCCcccccCCCC
Q 034492 61 FFLAGSYTKQI-VWKEQLCLVDKPQATYAMPGK 92 (93)
Q Consensus 61 LfLAGDwt~t~-~pAt~~~~~~~~~~~~~~~~~ 92 (93)
||++|++...+ ++...+|..|-....+--||.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~ 33 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN 33 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCC
Confidence 58899999876 599999999976666665554
No 146
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.24 E-value=56 Score=25.93 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.6
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 300 ~~t~~p~VyAiGDv~~ 315 (471)
T PRK06467 300 CRTNVPHIFAIGDIVG 315 (471)
T ss_pred cccCCCCEEEehhhcC
Confidence 3688999999999874
No 147
>PTZ00058 glutathione reductase; Provisional
Probab=20.46 E-value=61 Score=26.81 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.8
Q ss_pred CCCCCCCCEEEecCccc
Q 034492 53 DQKTPVKNFFLAGSYTK 69 (93)
Q Consensus 53 ~~~T~~~nLfLAGDwt~ 69 (93)
..+|+.+|+|.+||-+.
T Consensus 360 ~lqTs~p~IYA~GDv~~ 376 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCM 376 (561)
T ss_pred CCccCCCCEEEeEeccC
Confidence 35688999999999987
No 148
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=20.27 E-value=71 Score=25.97 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.5
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
..|..+|+|.+||-+.
T Consensus 405 ~~ts~~~Vfa~GD~~~ 420 (564)
T PRK12771 405 MMTGRPGVFAGGDMVP 420 (564)
T ss_pred ccCCCCCEEeccCcCC
Confidence 4578999999999874
No 149
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=20.26 E-value=70 Score=25.00 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.5
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|..+|+|.+||-+.
T Consensus 297 ~~t~~~~VyAiGD~~~ 312 (462)
T PRK06416 297 LRTNVPNIYAIGDIVG 312 (462)
T ss_pred CccCCCCEEEeeecCC
Confidence 3588999999999874
No 150
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=20.23 E-value=63 Score=27.03 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.7
Q ss_pred CCCCCCCEEEecCccc
Q 034492 54 QKTPVKNFFLAGSYTK 69 (93)
Q Consensus 54 ~~T~~~nLfLAGDwt~ 69 (93)
.+|+.+|+|.+||-+.
T Consensus 462 ~~Ts~pgVfA~GDv~~ 477 (652)
T PRK12814 462 LQTSVAGVFAGGDCVT 477 (652)
T ss_pred CcCCCCCEEEcCCcCC
Confidence 4688999999999874
No 151
>PRK13605 endoribonuclease SymE; Provisional
Probab=20.03 E-value=77 Score=21.30 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=15.3
Q ss_pred CCCCCCCCCCEEEecCcccc
Q 034492 51 RRDQKTPVKNFFLAGSYTKQ 70 (93)
Q Consensus 51 RP~~~T~~~nLfLAGDwt~t 70 (93)
+.+..+++|.+-|.|+|...
T Consensus 30 ~~~~~~~~PaI~LkG~WLee 49 (113)
T PRK13605 30 RYPDYSRIPAITLKGQWLEA 49 (113)
T ss_pred CCCCCCCCCceeECchhHHh
Confidence 33345678999999999975
Done!