BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034493
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
 pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
          Length = 345

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E D    F +Y+ A+FL+ W  + L++ DFQE+++FLQ+L
Sbjct: 253 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W  +++ ++L+ AY     F + P+H
Sbjct: 313 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 342


>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
           Gtpase Bound To Gdp And Alf3
          Length = 410

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 51/74 (68%)

Query: 17  DTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSR 76
           D+      +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT  WT  ++EM+LS 
Sbjct: 335 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSE 394

Query: 77  AYMWHSMFNNCPSH 90
           A++W S++ +  SH
Sbjct: 395 AFIWQSLYKDATSH 408


>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
          Length = 346

 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)

Query: 2   VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
           +L  ++P     RLWDTY +E +    F +Y+ A+FL+ W  + L + DFQ ++M LQ+L
Sbjct: 254 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNL 313

Query: 61  PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
           PT  W ++E+ ++L+ AY    MF + P+H
Sbjct: 314 PTIHWGNEEIGLLLAEAYRLKYMFADAPNH 343


>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
          Length = 396

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 47/66 (71%)

Query: 25  ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMF 84
           +L +F V++ A+FL+ WSD+L + DFQE + FLQ+ PT  WT  ++E +LS A++W S++
Sbjct: 323 SLNEFHVFVCAAFLIKWSDQLXEXDFQETITFLQNPPTKDWTETDIEXLLSEAFIWQSLY 382

Query: 85  NNCPSH 90
            +  SH
Sbjct: 383 KDATSH 388


>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
           Tbc1 Domain Family Member 14
          Length = 334

 Score = 36.6 bits (83), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 7   IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
           +P  L  R+WD +  +G+   +FL       L  + D L K+DF  M  FL  LP
Sbjct: 242 LPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 293


>pdb|2NXF|A Chain A, Crystal Structure Of A Dimetal Phosphatase From Danio
           Rerio Loc 393393
          Length = 322

 Score = 26.2 bits (56), Expect = 5.1,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 11/52 (21%)

Query: 34  FASFLLTWSDKLQKLD--FQEMVMFLQHLPTH---------AWTHQELEMVL 74
           F+   L W D +  L    QE V+   HLP H         AW H+ +  VL
Sbjct: 201 FSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVL 252


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.138    0.469 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,827,968
Number of Sequences: 62578
Number of extensions: 93125
Number of successful extensions: 226
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 9
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)