BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034493
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O59737|GYP1_SCHPO GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=gyp1 PE=3 SV=1
Length = 514
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEG-DALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHL 60
+L ++ + R+WDTY+AEG +F +Y+ A+FL+ WS +LQK++FQ++++FLQ +
Sbjct: 422 LLMRELSISNIIRMWDTYMAEGVQGFSEFHLYVCAAFLVKWSSELQKMEFQDILIFLQSI 481
Query: 61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSHL 91
PT W+ +++E++LS A++W S+++ +HL
Sbjct: 482 PTKDWSTKDIEILLSEAFLWKSLYSGAGAHL 512
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2
Length = 517
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
+L ++P RLWDTY +E D F +Y+ A+FL+ W + L++ DFQE+++FLQ+L
Sbjct: 425 LLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 484
Query: 61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
PT W +++ ++L+ AY F + P+H
Sbjct: 485 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 514
>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3
Length = 516
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
+L ++P RLWDTY +E + F +Y+ A+FL+ W + L++ DFQE+++FLQ+L
Sbjct: 424 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNL 483
Query: 61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
PT W Q++ ++L+ AY F + P+H
Sbjct: 484 PTARWDDQDVSLLLAEAYRLKFAFADAPNH 513
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis
GN=TBC1D22A PE=2 SV=2
Length = 497
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
+L ++P RLWDTY +E + F +Y+ A+FL+ W + L++ DFQE+++FLQ+L
Sbjct: 405 LLMREVPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 464
Query: 61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
PT W +++ ++L+ AY F + P+H
Sbjct: 465 PTAHWDDEDISLLLAEAYRLKFAFADAPNH 494
>sp|Q08484|GYP1_YEAST GTPase-activating protein GYP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GYP1 PE=1 SV=1
Length = 637
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%)
Query: 17 DTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSR 76
D+ +L +F V++ A+FL+ WSD+L ++DFQE + FLQ+ PT WT ++EM+LS
Sbjct: 562 DSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSE 621
Query: 77 AYMWHSMFNNCPSH 90
A++W S++ + SH
Sbjct: 622 AFIWQSLYKDATSH 635
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3
Length = 505
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
+L ++P RLWDTY +E + F +Y+ A+FL+ W + L + DFQ ++M LQ+L
Sbjct: 413 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNL 472
Query: 61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
PT W ++E+ ++L+ AY MF + P+H
Sbjct: 473 PTIHWGNEEIGLLLAEAYRLKYMFADAPNH 502
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B
PE=2 SV=1
Length = 505
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDK-LQKLDFQEMVMFLQHL 60
+L ++P RLWDTY +E + F +Y+ A+FL+ W + L + DFQ ++M LQ+L
Sbjct: 413 LLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNL 472
Query: 61 PTHAWTHQELEMVLSRAYMWHSMFNNCPSH 90
PT W ++E+ ++L+ AY MF + P+H
Sbjct: 473 PTIHWGNEEIGLLLAEAYRLKYMFADAPNH 502
>sp|Q9P2M4|TBC14_HUMAN TBC1 domain family member 14 OS=Homo sapiens GN=TBC1D14 PE=1 SV=3
Length = 693
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L K+DF M FL LP
Sbjct: 595 LPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLP 646
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum
GN=tbc1d5A PE=1 SV=1
Length = 1173
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHL 60
++L P + LWD+ E ++ +FL YI + L+ D++ + D+ E + L H
Sbjct: 707 IILAQVFPLDSLLILWDSIFKE--SVTEFLPYICLTMLIMIKDQIIEKDYSECLQVLFHY 764
Query: 61 PTHAWTHQELEMVLSRAY 78
P Q++ M+L+ AY
Sbjct: 765 P----VTQDMPMLLNTAY 778
>sp|Q80XC3|US6NL_MOUSE USP6 N-terminal-like protein OS=Mus musculus GN=Usp6nl PE=1 SV=2
Length = 819
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 6 QIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQ 58
+ PF L R+WD Y+ EG+ + + Y + L L KL +E+V FLQ
Sbjct: 275 RTPFRLNLRIWDIYIFEGERVLTAMSY---TILKLHKKHLMKLSMEELVEFLQ 324
>sp|Q6A039|TBC12_MOUSE TBC1 domain family member 12 OS=Mus musculus GN=Tbc1d12 PE=1 SV=2
Length = 696
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L ++DF + FL LP
Sbjct: 597 LPLDLACRVWDVFCRDGE---EFLFRTGLGILRLYEDILLQMDFIHIAQFLTKLP 648
>sp|O60347|TBC12_HUMAN TBC1 domain family member 12 OS=Homo sapiens GN=TBC1D12 PE=1 SV=3
Length = 775
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L ++DF + FL LP
Sbjct: 676 LPLDLACRVWDVFCRDGE---EFLFRTGLGILRLYEDILLQMDFIHIAQFLTKLP 727
>sp|Q0IHY4|TBC12_XENTR TBC1 domain family member 12 OS=Xenopus tropicalis GN=tbc1d12 PE=2
SV=1
Length = 684
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L ++DF + FL LP
Sbjct: 586 LPLDLACRVWDVFCRDGE---EFLFRTALGILRLYEDILLQMDFIHIAQFLTKLP 637
>sp|Q5CD77|TBC14_RAT TBC1 domain family member 14 OS=Rattus norvegicus GN=Tbc1d14 PE=2
SV=2
Length = 694
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L ++DF FL LP
Sbjct: 596 LPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTRMDFIHSAQFLTRLP 647
>sp|A6H7I8|TBC14_BOVIN TBC1 domain family member 14 OS=Bos taurus GN=TBC1D14 PE=2 SV=2
Length = 692
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L ++DF + FL LP
Sbjct: 594 LPLDLACRVWDVFCRDGE---EFLFRTALGLLRLFQDVLTRMDFIHVAQFLTRLP 645
>sp|Q92738|US6NL_HUMAN USP6 N-terminal-like protein OS=Homo sapiens GN=USP6NL PE=1 SV=3
Length = 828
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 6 QIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQ 58
+ PF L R+WD Y+ EG+ + + Y + L L KL +E+V F Q
Sbjct: 275 RTPFTLNLRIWDIYIFEGERVLTAMSY---TILKLHKKHLMKLSMEELVEFFQ 324
>sp|Q8CGA2|TBC14_MOUSE TBC1 domain family member 14 OS=Mus musculus GN=Tbc1d14 PE=2 SV=2
Length = 694
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 7 IPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
+P L R+WD + +G+ +FL L + D L ++DF FL LP
Sbjct: 596 LPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTRMDFIHSAQFLTRLP 647
>sp|Q55G97|TBCK_DICDI TBC domain-containing protein kinase-like protein OS=Dictyostelium
discoideum GN=tbck PE=3 SV=1
Length = 1033
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
V + +P + LWD+ L +LP+F I AS ++ + D + K++F++ + + +P
Sbjct: 823 VFAHILPIDKLEILWDSILLCPSSLPNF---IAASMIIQFRDSILKMNFEDGITMMSMIP 879
Query: 62 THAWTHQELEMVLSRAYMWHSMFNNCP 88
+ ++ +S A SMFN P
Sbjct: 880 S-----VDVHKCVSDAL---SMFNKTP 898
>sp|Q9VYY9|Y1727_DROME TBC1 domain family member CG11727 OS=Drosophila melanogaster
GN=CG11727 PE=1 SV=3
Length = 807
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 10 HLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQ-HLP 61
+L R+ D +L+EG +F+ + + LLT D L LD + M+ F Q LP
Sbjct: 287 NLSCRIMDVFLSEG---MEFIFKVALALLLTGKDTLLCLDMEAMLKFFQKELP 336
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 12 VTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLP 61
V R+WD+ A+G+ DFL+ + + L+ ++L + DF + LQ P
Sbjct: 334 VIRIWDSLFADGNRF-DFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYP 382
>sp|A1TLA3|APAH_ACIAC Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Acidovorax
citrulli (strain AAC00-1) GN=apaH PE=3 SV=1
Length = 280
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 22 EGDALPDFLVYIFASFLLTWSDKLQKLD 49
+GDALP+FL ++ + WSD+L +D
Sbjct: 146 QGDALPEFLQAMYGNAPDRWSDELSGMD 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.138 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,319,410
Number of Sequences: 539616
Number of extensions: 1150064
Number of successful extensions: 2615
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2599
Number of HSP's gapped (non-prelim): 23
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)