Query 034493
Match_columns 93
No_of_seqs 100 out of 299
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:02:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfz_A TBC1 domain family memb 99.9 2.1E-24 7.1E-29 162.8 10.6 93 1-93 252-345 (345)
2 1fkm_A Protein (GYP1P), ORF YO 99.9 1.6E-24 5.3E-29 167.5 8.9 91 1-91 239-389 (396)
3 3qwl_A TBC1 domain family memb 99.8 4.7E-20 1.6E-24 138.6 8.9 82 1-90 210-292 (294)
4 3hzj_A Rabgap1L, RAB GTPase-ac 99.6 1.1E-16 3.9E-21 118.9 5.3 77 2-81 198-275 (310)
5 3qye_A TBC1 domain family memb 99.6 8.3E-16 2.8E-20 115.0 7.2 77 2-82 232-309 (331)
6 2qq8_A TBC1 domain family memb 99.6 1.5E-15 5.1E-20 114.5 7.1 76 1-83 236-311 (334)
7 4hl4_A TBC1 domain family memb 99.6 7.1E-15 2.4E-19 108.7 8.5 77 2-86 211-291 (292)
8 2p0t_A UPF0307 protein pspto_4 60.8 18 0.00063 25.0 5.2 44 37-82 107-150 (176)
9 2p58_C Putative type III secre 50.0 31 0.001 22.4 4.6 37 34-76 41-77 (116)
10 2q2k_A Hypothetical protein; p 47.0 19 0.00065 20.9 2.9 20 45-64 31-50 (70)
11 2uwj_G Type III export protein 45.9 31 0.001 22.4 4.1 37 34-76 40-76 (115)
12 2qjx_A Protein BIM1; calponin 37.8 18 0.00061 23.8 2.0 17 43-59 88-104 (127)
13 2oy9_A UPF0223 protein BH2638; 34.8 59 0.002 20.5 4.0 29 59-87 6-35 (98)
14 2qjz_A Microtubule-associated 32.5 25 0.00084 22.8 2.1 17 43-59 84-100 (123)
15 4abo_I MAL3, microtubule integ 31.3 26 0.00089 23.6 2.0 17 43-59 84-100 (145)
16 1wyo_A Protein EB3, microtubul 24.4 29 0.001 23.6 1.3 17 43-59 101-117 (159)
17 2w84_A Peroxisomal membrane pr 22.6 94 0.0032 18.4 3.2 31 44-77 29-59 (70)
18 2yru_A Steroid receptor RNA ac 21.2 69 0.0023 20.5 2.6 47 35-81 62-113 (118)
No 1
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.91 E-value=2.1e-24 Score=162.80 Aligned_cols=93 Identities=35% Similarity=0.811 Sum_probs=80.8
Q ss_pred CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHh-hCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493 1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQ-KLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYM 79 (93)
Q Consensus 1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~-~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~ 79 (93)
.+|+||||+++++||||.+|++++++..+++|||+|+|..+|++|+ .+||++++.+||++|+.+|++.|++.++++|+.
T Consensus 252 ~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~ 331 (345)
T 2qfz_A 252 NLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYR 331 (345)
T ss_dssp TTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHH
T ss_pred HHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHH
Confidence 4789999999999999999999998877999999999999999987 599999999999999999999999999999999
Q ss_pred HHHhccCCcccccC
Q 034493 80 WHSMFNNCPSHLAS 93 (93)
Q Consensus 80 ~~~~~~~~~~~~~~ 93 (93)
++.+|.++|+||.+
T Consensus 332 l~~~~~~~~~h~~~ 345 (345)
T 2qfz_A 332 LKFAFADAPNHYKK 345 (345)
T ss_dssp HHHHC---------
T ss_pred HHHHHHhhHhhccC
Confidence 99999999999863
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.91 E-value=1.6e-24 Score=167.49 Aligned_cols=91 Identities=43% Similarity=0.910 Sum_probs=80.7
Q ss_pred CccccccCchhHHHHHHhhhccC---------------------------------------------------C-----
Q 034493 1 MVLFYQIPFHLVTRLWDTYLAEG---------------------------------------------------D----- 24 (93)
Q Consensus 1 ~ll~rEf~l~~~lrLWDt~la~~---------------------------------------------------~----- 24 (93)
.||+||||+++++||||+||+++ +
T Consensus 239 ~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (396)
T 1fkm_A 239 CLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGK 318 (396)
T ss_dssp TTTGGGSCHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred HHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchh
Confidence 47899999999999999999987 3
Q ss_pred ----CcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhccCCcccc
Q 034493 25 ----ALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHSMFNNCPSHL 91 (93)
Q Consensus 25 ----~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~~~~~~~~~~~ 91 (93)
++.++++|||+|+|..+|++|+++||+++|++||++|+.+|++.|++.++++|+.++++|.++++|-
T Consensus 319 ~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~~~~~~~~~~ 389 (396)
T 1fkm_A 319 MRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDATSHW 389 (396)
T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHHhccHHHH
Confidence 4458999999999999999999999999999999999999999999999999999999999999993
No 3
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.81 E-value=4.7e-20 Score=138.64 Aligned_cols=82 Identities=22% Similarity=0.410 Sum_probs=76.9
Q ss_pred CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCH-HHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 034493 1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDF-QEMVMFLQHLPTHAWTHQELEMVLSRAYM 79 (93)
Q Consensus 1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF-~~~~~~LQ~lp~~~w~~~di~~ll~~A~~ 79 (93)
.+|+||||+++++||||+||+++. ++++|||+|+|+.+|++|+++|| ++++++||++|+.+ ++.++++|+.
T Consensus 210 ~lF~~~~p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~d-----i~~ll~~A~~ 281 (294)
T 3qwl_A 210 RCFAGCLPESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDS-----SDAIVSKAID 281 (294)
T ss_dssp STTTTTSCHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTT-----HHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCccc-----HHHHHHHHHH
Confidence 378999999999999999999543 77999999999999999999999 88899999999987 9999999999
Q ss_pred HHHhccCCccc
Q 034493 80 WHSMFNNCPSH 90 (93)
Q Consensus 80 ~~~~~~~~~~~ 90 (93)
+...|.++|.|
T Consensus 282 l~~~~~~~~~~ 292 (294)
T 3qwl_A 282 LWHKHCGTPVH 292 (294)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHcCCCCcc
Confidence 99999999998
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=118.92 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=71.8
Q ss_pred ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHH
Q 034493 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQ-HLPTHAWTHQELEMVLSRAYMW 80 (93)
Q Consensus 2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ-~lp~~~w~~~di~~ll~~A~~~ 80 (93)
+|+++||++.++||||.++++|. .+++|||+|++...|+.|+++||++++++|| ++|...|++.|++.++++|+.+
T Consensus 198 lF~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l 274 (310)
T 3hzj_A 198 LFTAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNI 274 (310)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHS
T ss_pred HHhccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhc
Confidence 68999999999999999999986 4589999999999999999999999999998 6898888999999999999887
Q ss_pred H
Q 034493 81 H 81 (93)
Q Consensus 81 ~ 81 (93)
+
T Consensus 275 ~ 275 (310)
T 3hzj_A 275 K 275 (310)
T ss_dssp C
T ss_pred C
Confidence 4
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.61 E-value=8.3e-16 Score=115.00 Aligned_cols=77 Identities=14% Similarity=0.296 Sum_probs=69.6
Q ss_pred ccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhC-CHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q 034493 2 VLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKL-DFQEMVMFLQHLPTHAWTHQELEMVLSRAYMW 80 (93)
Q Consensus 2 ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~-dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~ 80 (93)
+|+++||++.++||||.+|++|.. +++|||+|+|...|+.|++. ||++++.+||+.++. |++.|++.++++|+.+
T Consensus 232 lF~~~lp~~~~lrlwD~~l~~g~~---~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~-~~~~di~~li~~A~~l 307 (331)
T 3qye_A 232 MFASQFPLGFVARVFDMIFLQGTE---VIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN-LGLVQMEKTINQVFEM 307 (331)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTC-CCHHHHHHHHHHHHHC
T ss_pred HhhhhCCHHHHHHHHHHHHHCCcH---HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhC
Confidence 789999999999999999999764 69999999999999999886 999999999995543 7899999999999877
Q ss_pred HH
Q 034493 81 HS 82 (93)
Q Consensus 81 ~~ 82 (93)
+.
T Consensus 308 ~~ 309 (331)
T 3qye_A 308 DI 309 (331)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 6
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=114.49 Aligned_cols=76 Identities=26% Similarity=0.501 Sum_probs=68.6
Q ss_pred CccccccCchhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q 034493 1 MVLFYQIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMW 80 (93)
Q Consensus 1 ~ll~rEf~l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~ 80 (93)
.+|+++||++.++||||.+|+++. .+++|||+|+|...++.|+++||++++.+||++|.. .|++.+++.|..+
T Consensus 236 tlF~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~----~d~~~l~~~a~~l 308 (334)
T 2qq8_A 236 TLYSKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPED----LPAEELFASIATI 308 (334)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTT----CCHHHHHHHHHHC
T ss_pred HHhcccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCc----CCHHHHHHHHHHc
Confidence 378999999999999999999874 779999999999999999999999999999999985 2389999999987
Q ss_pred HHh
Q 034493 81 HSM 83 (93)
Q Consensus 81 ~~~ 83 (93)
+-+
T Consensus 309 ~~~ 311 (334)
T 2qq8_A 309 QMQ 311 (334)
T ss_dssp CCE
T ss_pred cCc
Confidence 644
No 7
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.57 E-value=7.1e-15 Score=108.72 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=69.4
Q ss_pred ccccccC-chhHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHhhC--CHHHHHHHhcCCCC-CCCChHHHHHHHHHH
Q 034493 2 VLFYQIP-FHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKL--DFQEMVMFLQHLPT-HAWTHQELEMVLSRA 77 (93)
Q Consensus 2 ll~rEf~-l~~~lrLWDt~la~~~~~~~~~~yvc~A~L~~~r~~L~~~--dF~~~~~~LQ~lp~-~~w~~~di~~ll~~A 77 (93)
+|++++| +++++||||.+++++. .+++|||+|++...|++|++. ||+.++.+||++|. .| ++.++++|
T Consensus 211 lF~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d-----~~~li~~A 282 (292)
T 4hl4_A 211 WFGHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLP-----YETLISRA 282 (292)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCC-----HHHHHHHH
T ss_pred HHhhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCC-----HHHHHHHH
Confidence 6889996 9999999999999975 579999999999999999874 89999999999994 44 99999999
Q ss_pred HHHHHhccC
Q 034493 78 YMWHSMFNN 86 (93)
Q Consensus 78 ~~~~~~~~~ 86 (93)
..+.+.|..
T Consensus 283 ~~l~~~~pp 291 (292)
T 4hl4_A 283 GDLFVQFPP 291 (292)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHHCCC
Confidence 999988764
No 8
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=60.79 E-value=18 Score=24.99 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHH
Q 034493 37 FLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRAYMWHS 82 (93)
Q Consensus 37 ~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A~~~~~ 82 (93)
.+..||++|+..+=+.+-.++..+|..| -..+..+++.|..=++
T Consensus 107 ~lE~wRdrLi~~gd~al~e~~~~~P~~D--rQ~LRqLiR~A~kE~~ 150 (176)
T 2p0t_A 107 NLERWRDRLIAGDDADLEKFVIEYPDAD--RQQLRSLIRQAQHEVA 150 (176)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHSTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHCchhh--HHHHHHHHHHHHHHHH
Confidence 4789999999887788889999999876 4567777888865443
No 9
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.01 E-value=31 Score=22.45 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 034493 34 FASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSR 76 (93)
Q Consensus 34 c~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~ 76 (93)
||++| +..+-..++||++...+++.++.+| ++..++-
T Consensus 41 ~v~lI-R~sSLmNrG~Yq~Al~l~~~~c~pd-----lepw~AL 77 (116)
T 2p58_C 41 AVQLI-RLSSLMNRGDYASALQQGNKLAYPD-----LEPWLAL 77 (116)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHTTSCCGG-----GHHHHHH
T ss_pred HHHHH-HHHHHHcchhHHHHHHhcCCCCCch-----HHHHHHH
Confidence 44444 4555567999999999999999777 7776554
No 10
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=46.97 E-value=19 Score=20.90 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=17.9
Q ss_pred HhhCCHHHHHHHhcCCCCCC
Q 034493 45 LQKLDFQEMVMFLQHLPTHA 64 (93)
Q Consensus 45 L~~~dF~~~~~~LQ~lp~~~ 64 (93)
|.+.||.++..||.|.|...
T Consensus 31 ikkedypqifdflenvprgt 50 (70)
T 2q2k_A 31 IKKEDYPQIFDFLENVPRGT 50 (70)
T ss_dssp EETTTSHHHHHHHTTSCTTC
T ss_pred hhhhhchHHHHHHHcCCCcc
Confidence 46789999999999999876
No 11
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=45.87 E-value=31 Score=22.42 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 034493 34 FASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSR 76 (93)
Q Consensus 34 c~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~ 76 (93)
||++| +.++-..++||++...+++.++.+| ++..++-
T Consensus 40 ~v~lI-R~sSLmNrG~Yq~Al~l~~~~c~pd-----lepw~AL 76 (115)
T 2uwj_G 40 AARLI-RISSLANQGRYQEALAFAHGNPWPA-----LEPWFAL 76 (115)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHGGGTTCCCGG-----GHHHHHH
T ss_pred HHHHH-HHHHHHcchhHHHHHHhcCCCCCch-----HHHHHHH
Confidence 44444 4555567999999999999999777 7776554
No 12
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=37.76 E-value=18 Score=23.76 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=14.7
Q ss_pred HHHhhCCHHHHHHHhcC
Q 034493 43 DKLQKLDFQEMVMFLQH 59 (93)
Q Consensus 43 ~~L~~~dF~~~~~~LQ~ 59 (93)
++|.++.|+++++|||=
T Consensus 88 ~kLvKgrfQDNlEFlQW 104 (127)
T 2qjx_A 88 DKLIRCKFQDNLEFLQW 104 (127)
T ss_dssp HHHTTTCHHHHHHHHHH
T ss_pred HHHhccCchhHHHHHHH
Confidence 56788999999999983
No 13
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=34.85 E-value=59 Score=20.55 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCC-CCCCChHHHHHHHHHHHHHHHhccCC
Q 034493 59 HLP-THAWTHQELEMVLSRAYMWHSMFNNC 87 (93)
Q Consensus 59 ~lp-~~~w~~~di~~ll~~A~~~~~~~~~~ 87 (93)
++| ..+|+..||-.++.-=......|+.+
T Consensus 6 ~YPld~dWSteEii~Vi~F~~~VE~AYE~G 35 (98)
T 2oy9_A 6 TLPISLDWSTEEVIDVVHFFQAIEQAYDQG 35 (98)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 355 67899999999988666666666654
No 14
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=32.45 E-value=25 Score=22.83 Aligned_cols=17 Identities=47% Similarity=0.564 Sum_probs=14.9
Q ss_pred HHHhhCCHHHHHHHhcC
Q 034493 43 DKLQKLDFQEMVMFLQH 59 (93)
Q Consensus 43 ~~L~~~dF~~~~~~LQ~ 59 (93)
++|.++.|+++++|||=
T Consensus 84 ~kLvkgk~qdnleflqW 100 (123)
T 2qjz_A 84 DKLVKGKFQDNFEFVQW 100 (123)
T ss_dssp HHHTTCCHHHHHHHHHH
T ss_pred HHHHcCCchhHHHHHHH
Confidence 57889999999999983
No 15
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=31.26 E-value=26 Score=23.61 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.8
Q ss_pred HHHhhCCHHHHHHHhcC
Q 034493 43 DKLQKLDFQEMVMFLQH 59 (93)
Q Consensus 43 ~~L~~~dF~~~~~~LQ~ 59 (93)
++|.++.|+++++|||=
T Consensus 84 ~kLvKgk~QDNlEFlQW 100 (145)
T 4abo_I 84 ERLSRCKMQDNLEFVQW 100 (145)
T ss_dssp HHHTTTCHHHHHHHHHH
T ss_pred HHHhccchHhHHHHHHH
Confidence 57789999999999984
No 16
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.36 E-value=29 Score=23.57 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=14.8
Q ss_pred HHHhhCCHHHHHHHhcC
Q 034493 43 DKLQKLDFQEMVMFLQH 59 (93)
Q Consensus 43 ~~L~~~dF~~~~~~LQ~ 59 (93)
++|.++.|+++++|||=
T Consensus 101 ~kLvkgk~qdNlEFlqW 117 (159)
T 1wyo_A 101 EKLVKGKFQDNFEFIQW 117 (159)
T ss_dssp HHHTTTCSHHHHHHHHH
T ss_pred HHHhcCCchhHHHHHHH
Confidence 57889999999999983
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=22.64 E-value=94 Score=18.39 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHhhCCHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 034493 44 KLQKLDFQEMVMFLQHLPTHAWTHQELEMVLSRA 77 (93)
Q Consensus 44 ~L~~~dF~~~~~~LQ~lp~~~w~~~di~~ll~~A 77 (93)
.+.....+.=+.||++ .+-++.||+..+++|
T Consensus 29 ~V~~sp~~~K~~FL~s---KGLt~eEI~~Al~ra 59 (70)
T 2w84_A 29 RVRQSPLATRRAFLKK---KGLTDEEIDMAFQQS 59 (70)
T ss_dssp TGGGSCHHHHHHHHHH---TTCCHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHH---cCCCHHHHHHHHHHc
Confidence 3344455555555554 345568888888876
No 18
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.20 E-value=69 Score=20.47 Aligned_cols=47 Identities=6% Similarity=0.005 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhcCCCCCCCChHH-----HHHHHHHHHHHH
Q 034493 35 ASFLLTWSDKLQKLDFQEMVMFLQHLPTHAWTHQE-----LEMVLSRAYMWH 81 (93)
Q Consensus 35 ~A~L~~~r~~L~~~dF~~~~~~LQ~lp~~~w~~~d-----i~~ll~~A~~~~ 81 (93)
++-|..+...|.+.||......-..+-+..|++.- +..+|..|..+.
T Consensus 62 ~~~L~~l~~al~~~dy~~A~~ih~~l~t~~~~E~~~Wm~GlKrLI~~a~~~~ 113 (118)
T 2yru_A 62 KKRMALLVQELLHHQWDAADDIHRSLMVDHVTEVSQWMVGVKRLIAEKKSLS 113 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSTHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCcHHHHHhHHHHHHHHHHHHHHcC
Confidence 45566777888999999999999888888887654 777777775443
Done!