Query 034494
Match_columns 93
No_of_seqs 91 out of 104
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di0_A Activating signal coint 85.1 1.8 6.1E-05 27.7 4.8 38 6-44 14-60 (71)
2 2es9_A Putative cytoplasmic pr 83.8 0.65 2.2E-05 32.3 2.5 38 28-65 55-101 (115)
3 2ozb_B U4/U6 small nuclear rib 76.2 2.5 8.5E-05 32.3 3.7 48 1-48 102-151 (260)
4 1b8z_A Protein (histonelike pr 74.5 4.7 0.00016 25.0 4.1 30 24-53 1-30 (90)
5 1mul_A NS2, HU-2, DNA binding 72.8 6.2 0.00021 24.5 4.4 29 24-52 1-29 (90)
6 3icx_A PRE mRNA splicing prote 70.2 4.2 0.00014 31.1 3.7 47 1-47 88-136 (255)
7 2o97_B NS1, HU-1, DNA-binding 67.9 7.6 0.00026 24.1 4.0 28 24-51 1-28 (90)
8 1owf_A IHF-alpha, integration 67.6 7.8 0.00027 24.5 4.1 30 24-53 3-32 (99)
9 1p71_A DNA-binding protein HU; 67.0 7.5 0.00026 24.3 3.9 28 24-51 1-28 (94)
10 3c4i_A DNA-binding protein HU 66.0 7.9 0.00027 24.6 3.9 29 24-52 1-29 (99)
11 3pkr_A FLIG, flagellar motor s 65.9 28 0.00097 26.6 7.6 62 1-65 112-180 (279)
12 4hw4_A Induced myeloid leukemi 63.8 34 0.0012 23.8 8.1 68 8-86 4-87 (157)
13 2nnw_A NOP5/NOP56 related prot 63.3 6.5 0.00022 31.6 3.7 47 1-47 222-270 (376)
14 2e9x_A DNA replication complex 60.0 4.6 0.00016 27.7 2.0 50 15-66 71-121 (149)
15 1exe_A Transcription factor 1; 59.8 8.3 0.00028 24.5 3.1 29 24-52 1-29 (99)
16 1owf_B IHF-beta, integration H 59.2 15 0.0005 22.9 4.2 28 24-51 1-29 (94)
17 3rhi_A DNA-binding protein HU; 58.6 8.4 0.00029 24.2 3.0 29 23-51 3-31 (93)
18 3pla_A NOP5, PRE mRNA splicing 58.2 9 0.00031 31.1 3.7 50 1-50 221-272 (388)
19 3c18_A Nucleotidyltransferase- 57.3 6.7 0.00023 30.7 2.7 42 37-83 168-209 (290)
20 3doe_B ADP-ribosylation factor 54.5 9.6 0.00033 27.7 3.0 45 6-53 69-116 (165)
21 2kua_A BCL-2-like protein 10; 53.9 24 0.00081 25.0 5.0 37 47-85 50-86 (170)
22 2vof_A BCL-2-related protein A 47.8 45 0.0015 22.8 5.5 40 47-86 45-87 (157)
23 3hjl_A Flagellar motor switch 46.9 62 0.0021 25.1 6.7 63 1-65 167-236 (329)
24 2i2o_A EIF4G-like protein; pro 46.9 48 0.0016 24.0 5.8 48 14-68 129-181 (224)
25 2vso_E Eukaryotic initiation f 46.2 15 0.00053 27.1 3.1 51 26-83 210-270 (284)
26 2np2_A HBB; protein-DNA comple 45.9 22 0.00074 22.9 3.4 29 24-52 9-42 (108)
27 2dii_A TFIIH basal transcripti 44.5 11 0.00038 23.5 1.7 39 49-87 20-59 (61)
28 4fhr_B Flagellar motor switch 44.0 72 0.0025 23.2 6.4 63 1-65 54-123 (216)
29 2hl7_A Cytochrome C-type bioge 41.5 47 0.0016 21.4 4.5 36 3-38 39-74 (84)
30 2iie_A Integration HOST factor 39.8 87 0.003 22.4 6.2 30 24-53 47-76 (204)
31 1o0l_A Apoptosis regulator BCL 39.6 28 0.00097 24.6 3.5 70 6-86 13-95 (188)
32 2w3l_A BCL2-XL, apoptosis regu 37.5 90 0.0031 20.8 7.5 66 10-86 5-79 (144)
33 2kw0_A CCMH protein; oxidoredu 36.5 60 0.0021 21.2 4.5 37 2-38 35-71 (90)
34 3rk6_A Polyadenylate-binding p 36.2 56 0.0019 23.7 4.8 66 12-84 157-228 (234)
35 3e98_A GAF domain of unknown f 36.1 7.6 0.00026 28.9 0.0 12 53-64 41-52 (252)
36 2f4m_B UV excision repair prot 35.9 63 0.0021 19.6 4.2 26 40-65 23-48 (61)
37 2q9q_C DNA replication complex 35.1 17 0.00059 25.8 1.7 51 15-67 71-122 (196)
38 2p6v_A Transcription initiatio 34.0 82 0.0028 21.7 5.0 37 5-41 39-75 (114)
39 1tpx_A Prion protein, major pr 32.2 26 0.0009 24.4 2.3 21 5-25 89-110 (121)
40 1xn7_A Hypothetical protein YH 31.2 58 0.002 20.1 3.6 25 31-55 20-44 (78)
41 3lxp_A Non-receptor tyrosine-p 31.0 50 0.0017 23.1 3.6 25 10-34 278-306 (318)
42 1pve_A HHR23B, UV excision rep 30.4 64 0.0022 20.3 3.7 28 38-65 23-50 (72)
43 1b6c_B TGF-B superfamily recep 30.0 50 0.0017 22.9 3.4 29 7-35 301-333 (342)
44 3qom_A 6-phospho-beta-glucosid 29.4 19 0.00065 29.2 1.3 46 5-65 110-166 (481)
45 2h7b_A Core-binding factor, ML 28.0 1.1E+02 0.0036 20.9 4.7 37 5-41 24-60 (105)
46 4a3y_A Raucaffricine-O-beta-D- 27.3 20 0.00068 29.3 1.1 46 5-65 113-169 (540)
47 1p6r_A Penicillinase repressor 26.9 82 0.0028 18.2 3.6 33 22-54 22-54 (82)
48 1tbx_A ORF F-93, hypothetical 26.9 95 0.0032 18.3 3.9 33 22-54 21-53 (99)
49 3fyr_A Sporulation inhibitor S 26.1 1.1E+02 0.0036 18.1 4.2 33 23-55 5-39 (48)
50 3tuf_A Stage III sporulation p 25.4 33 0.0011 25.5 1.9 33 54-88 80-112 (197)
51 2vkl_A RV0948C/MT0975; helical 25.0 28 0.00096 22.1 1.3 58 8-65 20-83 (90)
52 2keb_A DNA polymerase subunit 24.0 84 0.0029 21.3 3.6 41 10-52 45-89 (101)
53 2k6x_A Sigma-A, RNA polymerase 23.9 1.2E+02 0.0042 18.0 4.5 46 10-55 9-56 (72)
54 3uim_A Brassinosteroid insensi 23.5 97 0.0033 21.4 3.9 39 5-44 274-316 (326)
55 3ta9_A Glycoside hydrolase fam 23.4 33 0.0011 27.6 1.7 37 28-65 110-156 (458)
56 1b0n_B Protein (SINI protein); 23.2 89 0.0031 18.7 3.3 23 14-36 17-39 (57)
57 4e2i_2 DNA polymerase alpha su 22.3 82 0.0028 20.2 3.1 24 10-33 22-45 (78)
58 2k02_A Ferrous iron transport 22.3 83 0.0028 20.0 3.2 26 30-55 19-44 (87)
59 1k78_A Paired box protein PAX5 22.3 1.3E+02 0.0044 19.0 4.1 30 23-53 108-141 (149)
60 1xd7_A YWNA; structural genomi 22.1 82 0.0028 20.6 3.2 26 29-54 25-50 (145)
61 1ni5_A Putative cell cycle pro 22.0 2.5E+02 0.0086 21.7 6.4 43 22-65 157-213 (433)
62 3ed3_A Protein disulfide-isome 21.9 48 0.0017 24.1 2.2 36 24-65 253-288 (298)
63 3l7w_A Putative uncharacterize 21.9 88 0.003 19.4 3.2 31 24-54 23-53 (108)
64 3rmi_A Chorismate mutase prote 21.7 1.2E+02 0.0041 19.8 4.0 16 38-53 74-89 (114)
65 3tqn_A Transcriptional regulat 21.1 1.6E+02 0.0054 18.4 4.3 46 10-55 13-61 (113)
66 1p4o_A Insulin-like growth fac 20.8 84 0.0029 21.6 3.1 38 10-49 267-308 (322)
67 3t8r_A Staphylococcus aureus C 20.3 1E+02 0.0036 20.2 3.5 25 30-54 31-55 (143)
68 2nru_A Interleukin-1 receptor- 20.2 1.2E+02 0.0041 20.6 3.8 30 6-35 270-303 (307)
69 4hz8_A Beta-glucosidase; BGLB, 20.1 37 0.0013 27.2 1.3 38 27-65 101-148 (444)
70 2y75_A HTH-type transcriptiona 20.1 1.1E+02 0.0039 19.1 3.5 26 30-55 29-54 (129)
No 1
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.10 E-value=1.8 Score=27.70 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=31.0
Q ss_pred HHHHHHHHHH--------HHHHHHhh-CCHHHHHHHHHhhcCCChhhH
Q 034494 6 ASYIHLVHHL--------IEECLVFN-MSKEECMEALSKHANIKPVIT 44 (93)
Q Consensus 6 ~~~I~~VQ~L--------IErCLqly-Msk~Evv~~L~~~a~I~P~fT 44 (93)
.+.|..|+.| |.+||..| -|-|.||.+|.+. ++.|...
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~-~LPp~L~ 60 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE-RLAPTLS 60 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT-CCCTTTT
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc-CCCHHHH
Confidence 3567777765 89999999 8999999999985 7877653
No 2
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=83.80 E-value=0.65 Score=32.29 Aligned_cols=38 Identities=29% Similarity=0.546 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCCChhhHHHH--HHHHHH-------hcHHHHHHHHhc
Q 034494 28 ECMEALSKHANIKPVITSTV--WKELEK-------ENKEFFEAYARK 65 (93)
Q Consensus 28 Evv~~L~~~a~I~P~fT~~V--W~~Le~-------eNpeFF~aY~~~ 65 (93)
+-|.+=-.+-|-+|+||..| |.+--+ .|||||..|.+-
T Consensus 55 ~dv~aRg~qegWn~gFT~k~~gWAek~esGer~vIKnPEyFstYM~e 101 (115)
T 2es9_A 55 EVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQE 101 (115)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCCSSGGGSCHHHHH
T ss_pred HHHHHhcccccCChhHHHHHHHHHHHhccCCeeeecChHHHHHHHHH
Confidence 33445556779999999987 543322 799999999765
No 3
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=76.24 E-value=2.5 Score=32.28 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=41.8
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhc-CCChhhHHHHH
Q 034494 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHA-NIKPVITSTVW 48 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a-~I~P~fT~~VW 48 (93)
||.. |..|+..|+.+.++.+.++=-++++.++|..+. .|-|.+|.+|=
T Consensus 102 ~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~~rM~~iAPNLtaLvG 151 (260)
T 2ozb_B 102 QGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIG 151 (260)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhC
Confidence 4553 789999999999999999999999999999864 59999998864
No 4
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=74.52 E-value=4.7 Score=24.97 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~ 53 (93)
||+.|+++.+.++.++.+.-...|++.|-+
T Consensus 1 mtk~eli~~ia~~~~ls~~~~~~~l~~~~~ 30 (90)
T 1b8z_A 1 MNKKELIDRVAKKAGAKKKDVKLILDTILE 30 (90)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 899999999999999988877777665543
No 5
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=72.82 E-value=6.2 Score=24.46 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le 52 (93)
||+.|+++.+.++.++.+.-...|.+.|-
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~~ 29 (90)
T 1mul_A 1 MNKTQLIDVIAEKAELSKTQAKAALESTL 29 (90)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998877776665544
No 6
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=70.18 E-value=4.2 Score=31.14 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=41.4
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC-CChhhHHHH
Q 034494 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHAN-IKPVITSTV 47 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~-I~P~fT~~V 47 (93)
||-. |.+|+..|+.+.++.+.++=.+.++.++|..+.+ |-|.+|.+|
T Consensus 88 ~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLv 136 (255)
T 3icx_A 88 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALV 136 (255)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHh
Confidence 5543 7899999999999999999999999999998655 899998876
No 7
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=67.88 E-value=7.6 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~L 51 (93)
||+.|+++.+.++.++.+.-...|.+.|
T Consensus 1 m~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (90)
T 2o97_B 1 MNKSQLIDKIAAGADISKAAAGRALDAI 28 (90)
T ss_dssp CBHHHHHHHHHHTTC-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999999888887666655544
No 8
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=67.59 E-value=7.8 Score=24.54 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~ 53 (93)
||+.|+++.+.++.++.+.-...|++.|-+
T Consensus 3 m~k~eli~~ia~~~~ls~~~~~~vl~~~~~ 32 (99)
T 1owf_A 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFE 32 (99)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 899999999999999988877777665543
No 9
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=67.02 E-value=7.5 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~L 51 (93)
||+.|+++.+.++.++.+.-...|.+.|
T Consensus 1 M~k~eli~~ia~~~~ls~~~~~~~l~~~ 28 (94)
T 1p71_A 1 MNKGELVDAVAEKASVTKKQADAVLTAA 28 (94)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8999999999998888887666665544
No 10
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=66.01 E-value=7.9 Score=24.58 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le 52 (93)
||+.|+++.+.++.++...-...|.+.|-
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~ 29 (99)
T 3c4i_A 1 MNKAELIDVLTQKLGSDRRQATAAVENVV 29 (99)
T ss_dssp CBHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88999999999988888876666655443
No 11
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=65.89 E-value=28 Score=26.55 Aligned_cols=62 Identities=15% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc
Q 034494 1 MDDSSASYIHLVHHLIEECLVFNMSK-------EECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk-------~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~ 65 (93)
|+.-|.+-++.|-..+++||....+. +.+++-|- ++++..-..|...|++.+|++.+.=..+
T Consensus 112 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN---~~d~~~e~~iL~~L~~~dpelAe~Ir~~ 180 (279)
T 3pkr_A 112 LGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFN---RLGQKSAKTTLARIESVDNKLAGAIKEM 180 (279)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHH---TSCHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHH---cCChHHHHHHHHHHHhhCHHHHHHHHHh
Confidence 45668899999999999999987654 33444443 6778888899999999999999887555
No 12
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=63.79 E-value=34 Score=23.77 Aligned_cols=68 Identities=13% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhC--------------CHHHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc--hhhhhh
Q 034494 8 YIHLVHHLIEECLVFNM--------------SKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK--NAERAT 71 (93)
Q Consensus 8 ~I~~VQ~LIErCLqlyM--------------sk~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~--~~e~~s 71 (93)
-......||-+||.-+. ...+++.+|. .|=.+|++.++.+|+.+-.+ +.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Lr-----------~vgdele~~~~~~f~~m~~~L~it~~~a 72 (157)
T 4hw4_A 4 LYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLR-----------RVGDGVQRNHETAFQGMLRKLDIKNEDD 72 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCSCCCSSHHHHHHHHHHHH-----------HHHHHHHHHTHHHHHHHHHHHCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCCCCCCCCchHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 34566778888888877 3567777777 45678999999999999765 333334
Q ss_pred HHHHHHHHHHHHhcc
Q 034494 72 VMETRERIEKMLANS 86 (93)
Q Consensus 72 e~~~~~~iq~m~s~~ 86 (93)
-..+.+....++++.
T Consensus 73 ~~~F~~Va~elF~dG 87 (157)
T 4hw4_A 73 VKSLSRVMIHVFSDG 87 (157)
T ss_dssp HHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhccC
Confidence 445777777777764
No 13
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=63.31 E-value=6.5 Score=31.62 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhc-CCChhhHHHH
Q 034494 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHA-NIKPVITSTV 47 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a-~I~P~fT~~V 47 (93)
||.. |..|+..|+.+.++.+.++=.++++.++|..+. .|-|.+|.+|
T Consensus 222 ~G~~ls~~dl~~i~~~~~~v~~L~~~R~~l~~yl~~rM~~iAPNLsaLv 270 (376)
T 2nnw_A 222 MGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALV 270 (376)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence 4553 788999999999999999999999999999874 5899999876
No 14
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=59.96 E-value=4.6 Score=27.73 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=36.4
Q ss_pred HHHHHHHhh-CCHHHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhch
Q 034494 15 LIEECLVFN-MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKN 66 (93)
Q Consensus 15 LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~~ 66 (93)
-+-|||.-| +++-+-++.+.-+.+ +.+...++..|-.+-.+||+.|..-.
T Consensus 71 RnKrcLlAYl~~Rl~kI~~~~w~~g--~~L~~~~~~~LS~~E~~f~~~Y~~lL 121 (149)
T 2e9x_A 71 RNRRCTVAYLYDRLLRIRALRWEYG--SVLPNALRFHMAAEEMEWFNNYKRSL 121 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--SSCCHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc--ccCChHHHhcCCHHHHHHHHHHHHHH
Confidence 346899988 467777777776544 23345678888889999999997653
No 15
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=59.76 E-value=8.3 Score=24.55 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le 52 (93)
||+.|+++.+.+..++.+.-...|.+.|-
T Consensus 1 Mtk~eLi~~ia~~~~lsk~~~~~~l~~~~ 29 (99)
T 1exe_A 1 MNKTELIKAIAQDTGLTQVSVSKMLASFE 29 (99)
T ss_dssp CCTTHHHHHHHHHHCSCCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999998877776665543
No 16
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=59.24 E-value=15 Score=22.87 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHhh-cCCChhhHHHHHHHH
Q 034494 24 MSKEECMEALSKH-ANIKPVITSTVWKEL 51 (93)
Q Consensus 24 Msk~Evv~~L~~~-a~I~P~fT~~VW~~L 51 (93)
||+.|+++.+.++ .++.+.-...|.+.|
T Consensus 1 Mtk~eli~~ia~~~~~ls~~~~~~~l~~~ 29 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEM 29 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8999999999998 588887666665544
No 17
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=58.64 E-value=8.4 Score=24.18 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=19.1
Q ss_pred hCCHHHHHHHHHhhcCCChhhHHHHHHHH
Q 034494 23 NMSKEECMEALSKHANIKPVITSTVWKEL 51 (93)
Q Consensus 23 yMsk~Evv~~L~~~a~I~P~fT~~VW~~L 51 (93)
-||+.|+++.+.++.++...-...|.+.|
T Consensus 3 ~mtk~eLi~~ia~~~~lsk~~~~~~v~~~ 31 (93)
T 3rhi_A 3 AMNKTELIKNVAQNAEISQKEATVVVQTV 31 (93)
T ss_dssp ----CHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 38999999999998888776666555443
No 18
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A*
Probab=58.15 E-value=9 Score=31.06 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=42.9
Q ss_pred CCCc-hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC-CChhhHHHHHHH
Q 034494 1 MDDS-SASYIHLVHHLIEECLVFNMSKEECMEALSKHAN-IKPVITSTVWKE 50 (93)
Q Consensus 1 ~~~~-s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~-I~P~fT~~VW~~ 50 (93)
||.. |.+|+..|+.+.++.+.++=.++++.++|..+.+ |-|.+|.+|=..
T Consensus 221 mG~~ls~~dl~~I~~~~~~v~~L~e~R~~L~~Yl~srM~~iAPNLsaLvG~~ 272 (388)
T 3pla_A 221 IGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPA 272 (388)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHhccH
Confidence 5543 7899999999999999999999999999998655 999999877443
No 19
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=57.29 E-value=6.7 Score=30.71 Aligned_cols=42 Identities=17% Similarity=0.398 Sum_probs=28.7
Q ss_pred cCCChhhHHHHHHHHHHhcHHHHHHHHhchhhhhhHHHHHHHHHHHH
Q 034494 37 ANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIEKML 83 (93)
Q Consensus 37 a~I~P~fT~~VW~~Le~eNpeFF~aY~~~~~e~~se~~~~~~iq~m~ 83 (93)
.|.-|.+ +||++...=||+|+|-|..-.. |++...+||+..+
T Consensus 168 ~G~~pe~--tvw~qv~~i~~~iyKLyeEL~~---s~E~lekrielll 209 (290)
T 3c18_A 168 KGAHPEV--VVWEQARLDDPDVYKLYEQLLL---SEETLEQRIHLAL 209 (290)
T ss_dssp TTCCCCT--THHHHHHHHCHHHHHHHHHHHT---CCSCHHHHHHHHH
T ss_pred cCCcCch--hHHHHHHhcCHHHHHHHHHHhc---CcccHHHHHHHHH
Confidence 4777776 6899999999999999965421 2333344555444
No 20
>3doe_B ADP-ribosylation factor-like protein 2-binding protein; binder of ARL2, small GTPase, effector, complex structure, GTP-binding, lipoprotein; HET: GTP; 2.25A {Homo sapiens} PDB: 3dof_B* 2k9a_A 2k0s_A
Probab=54.49 E-value=9.6 Score=27.66 Aligned_cols=45 Identities=27% Similarity=0.409 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHh---hCCHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 034494 6 ASYIHLVHHLIEECLVF---NMSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 6 ~~~I~~VQ~LIErCLql---yMsk~Evv~~L~~~a~I~P~fT~~VW~~Le~ 53 (93)
.+|+.+|-.+||.-|.- ..|.++++.+|+++ ...+...||+.|-.
T Consensus 69 ~eY~~LVE~~Le~~L~e~i~Gfsme~F~~~l~~~---~~e~~~dIfe~Lla 116 (165)
T 3doe_B 69 NEYISLVEKYIEEQLLQRIPEFNMAAFTTTLQHH---KDEVAGDIFDMLLT 116 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHTTT---CC--CCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhc---chhhHHHHHHHHHH
Confidence 46888899999988887 78999999999975 34566666665554
No 21
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=53.87 E-value=24 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.496 Sum_probs=23.5
Q ss_pred HHHHHHHhcHHHHHHHHhchhhhhhHHHHHHHHHHHHhc
Q 034494 47 VWKELEKENKEFFEAYARKNAERATVMETRERIEKMLAN 85 (93)
Q Consensus 47 VW~~Le~eNpeFF~aY~~~~~e~~se~~~~~~iq~m~s~ 85 (93)
|=.+|++.++.||+.+-. .......-+.+.-..++++
T Consensus 50 v~~ele~~~~~~f~~~~~--~~~~a~~~f~~Va~elF~d 86 (170)
T 2kua_A 50 VTRQIQQEHQEFFSSFCE--SRGNRLELVKQMADKLLSK 86 (170)
T ss_dssp HHHHHHHHHHHHHHHHHT--TTSCHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHhhhC--CcchHHHHHHHHHHHHhcc
Confidence 557899999999999972 2222223444555555654
No 22
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=47.82 E-value=45 Score=22.82 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHhcHHHHHHHHhch---hhhhhHHHHHHHHHHHHhcc
Q 034494 47 VWKELEKENKEFFEAYARKN---AERATVMETRERIEKMLANS 86 (93)
Q Consensus 47 VW~~Le~eNpeFF~aY~~~~---~e~~se~~~~~~iq~m~s~~ 86 (93)
|=.+|+.+++++|+.+-.+. .+..+...+.+....++++.
T Consensus 45 ~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~dg 87 (157)
T 2vof_A 45 VAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFEDG 87 (157)
T ss_dssp HHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcCC
Confidence 34567899999999997762 34555555777777888654
No 23
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=46.92 E-value=62 Score=25.08 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=47.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc
Q 034494 1 MDDSSASYIHLVHHLIEECLVFNMSK-------EECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk-------~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~ 65 (93)
|+.-|.+-++.|-..+++||....+. -+.+-.+.+ ++++..-..|...|++.+|++...=..+
T Consensus 167 l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~gG~~~vA~ILN--~~d~~~e~~il~~L~~~dpela~~Ir~~ 236 (329)
T 3hjl_A 167 LENVNVQYVKELAQILLEEISSLGAKEALKLEGTAVAAELLN--TLDKETRELILQSIGQEDPLLEERIREK 236 (329)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH--HSCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHh--cCChHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 46668899999999999999875433 233433333 4677777889999999999998876554
No 24
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=46.91 E-value=48 Score=24.00 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCCH-----HHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhchhh
Q 034494 14 HLIEECLVFNMSK-----EECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAE 68 (93)
Q Consensus 14 ~LIErCLqlyMsk-----~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~~~e 68 (93)
+.|-.|++.-|.. +|-++.|.. +-.+|=..|+..++.....|..+.++
T Consensus 129 ~i~~~cl~~Ll~~~~~p~Ee~lEcl~~-------LL~tvG~~Ld~~~~~~md~~f~~l~~ 181 (224)
T 2i2o_A 129 HPVYDCLFRLAQSDALKNEEEVDCLVL-------QLHRIGDQLEKMNVQLMDELFNLLRD 181 (224)
T ss_dssp HHHHHHHHHHTSHHHHTSHHHHHHHHH-------HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455666665543 566777664 34578899999999999999988555
No 25
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=46.19 E-value=15 Score=27.07 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcCCChhhHHHHHHHHHHhc----------HHHHHHHHhchhhhhhHHHHHHHHHHHH
Q 034494 26 KEECMEALSKHANIKPVITSTVWKELEKEN----------KEFFEAYARKNAERATVMETRERIEKML 83 (93)
Q Consensus 26 k~Evv~~L~~~a~I~P~fT~~VW~~Le~eN----------peFF~aY~~~~~e~~se~~~~~~iq~m~ 83 (93)
.++-|+.|.. +-.+|-..|++.. +...+.|..+...-..+....+|++-||
T Consensus 210 ~e~~iE~l~~-------lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~RirFml 270 (284)
T 2vso_E 210 SEETLESVVE-------LLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIKFKL 270 (284)
T ss_dssp CHHHHHHHHH-------HHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred CHHHHHHHHH-------HHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3566666664 5568999999876 5688888888444333333445555444
No 26
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=45.86 E-value=22 Score=22.87 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCHHHHHHHHH-----hhcCCChhhHHHHHHHHH
Q 034494 24 MSKEECMEALS-----KHANIKPVITSTVWKELE 52 (93)
Q Consensus 24 Msk~Evv~~L~-----~~a~I~P~fT~~VW~~Le 52 (93)
||+.|+++.+. ++.++...-...|.+.|-
T Consensus 9 mtk~eLi~~ia~~~~~~~~~lsk~~~~~vl~~~~ 42 (108)
T 2np2_A 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFF 42 (108)
T ss_dssp EEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHH
Confidence 89999999999 888888877666655443
No 27
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=44.48 E-value=11 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=30.3
Q ss_pred HHHHHhcHHHHHHHHhc-hhhhhhHHHHHHHHHHHHhccc
Q 034494 49 KELEKENKEFFEAYARK-NAERATVMETRERIEKMLANST 87 (93)
Q Consensus 49 ~~Le~eNpeFF~aY~~~-~~e~~se~~~~~~iq~m~s~~~ 87 (93)
++|.++||+-++-|..- ....|++.+|=.--..|+.+++
T Consensus 20 ~rlL~eN~~L~qLyk~LV~s~vIse~eFW~~r~~ll~~~~ 59 (61)
T 2dii_A 20 NRMLQEDPVLFQLYKDLVVSQVISAEEFWANRLNVNSGPS 59 (61)
T ss_dssp HHHHHHCHHHHHHHHHHHTTTSSCHHHHHHHHCSSCCCCC
T ss_pred HHHHHhCHHHHHHHHHHHHhCcCCHHHHHHHHHHhhcCCC
Confidence 46778999999999766 6668899888877666665544
No 28
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=44.01 E-value=72 Score=23.15 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=44.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhCCHHH-------HHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc
Q 034494 1 MDDSSASYIHLVHHLIEECLVFNMSKEE-------CMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 1 ~~~~s~~~I~~VQ~LIErCLqlyMsk~E-------vv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~ 65 (93)
|+.-|.+-++.|-..+++||....+..- .+-.+.+ +.++..-..|...|++.+|++...=..+
T Consensus 54 l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~~gG~~~~A~IlN--~~~~~~e~~il~~L~~~d~ela~~I~~~ 123 (216)
T 4fhr_B 54 LERTSPEVVKEIERNLEKKISGFVSRTFSKVGGIDTAAEIMN--NLDRTTEKKIMDKLVQENPELADEIRRR 123 (216)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCC-------CSHHHHHHHHH--HSCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccccccccCCcHHHHHHHHH--cCChhHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4556788899999999999987766531 2222232 4677777889999999999998766544
No 29
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=41.49 E-value=47 Score=21.37 Aligned_cols=36 Identities=19% Similarity=0.089 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC
Q 034494 3 DSSASYIHLVHHLIEECLVFNMSKEECMEALSKHAN 38 (93)
Q Consensus 3 ~~s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~ 38 (93)
||.+....-...+|-+=|.-..|.+||+++|-.+.|
T Consensus 39 dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 39 DSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 555566666778888889999999999999988776
No 30
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=39.82 E-value=87 Score=22.40 Aligned_cols=30 Identities=13% Similarity=0.066 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELEK 53 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~ 53 (93)
||+.|+++.+.+..++.+.-...|.+.|-+
T Consensus 47 Mtk~eLi~~ia~~~~lsk~da~~vl~~l~~ 76 (204)
T 2iie_A 47 LTKAEMSEYLFDKLGLSKRDAKELVELFFE 76 (204)
T ss_dssp BCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999988877777665543
No 31
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=39.57 E-value=28 Score=24.60 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhh-----------CCHHHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc--hhhhhhH
Q 034494 6 ASYIHLVHHLIEECLVFN-----------MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK--NAERATV 72 (93)
Q Consensus 6 ~~~I~~VQ~LIErCLqly-----------Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~--~~e~~se 72 (93)
.+.-.+|.+-|.-||+.- -+.+++..+|. .+=.+||+.|+++|+..-.+ +......
T Consensus 13 ~~~~~L~~dYi~yrl~~~g~~~~~~~~~~~~~~~v~~~Lr-----------~~gdele~~~~~~f~~~~~~l~i~~~~~~ 81 (188)
T 1o0l_A 13 PDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMR-----------AAGDEFETRFRRTFSDLAAQLHVTPGSAQ 81 (188)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTTCSGGGSCSCSTTHHHHH-----------HHHHHHHHHCSCSHHHHHHHTTTCSSTTH
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCCCChhHHHHHHH-----------HHHHHHHHHhHHHHHHHHHhcCCCCccHH
Confidence 344456777777777631 11222233333 46688999999999998664 4334444
Q ss_pred HHHHHHHHHHHhcc
Q 034494 73 METRERIEKMLANS 86 (93)
Q Consensus 73 ~~~~~~iq~m~s~~ 86 (93)
..+.+....++++.
T Consensus 82 ~~F~~Va~elF~dG 95 (188)
T 1o0l_A 82 QRFTQVSDELFQGG 95 (188)
T ss_dssp HHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhcCC
Confidence 55666667776543
No 32
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=37.48 E-value=90 Score=20.80 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhh-------CCHHHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc--hhhhhhHHHHHHHHH
Q 034494 10 HLVHHLIEECLVFN-------MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK--NAERATVMETRERIE 80 (93)
Q Consensus 10 ~~VQ~LIErCLqly-------Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~--~~e~~se~~~~~~iq 80 (93)
.+|.+-|.-||+.- -...++..+|.. +=.+||+.+|.+|+..-.+ +....+...+.+...
T Consensus 5 ~L~~dyi~~~l~~~g~~~~~~~~p~~~~~~Lr~-----------~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~ 73 (144)
T 2w3l_A 5 EIVMKYIHYKLSQRGYEWDAGADSEVVHKTLRE-----------AGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVE 73 (144)
T ss_dssp HHHHHHHHHHHHHTTCCCCC---CHHHHHHHHH-----------HHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcCCCcccHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHH
Confidence 45666777777632 123455555553 3388999999999999776 334445556666667
Q ss_pred HHHhcc
Q 034494 81 KMLANS 86 (93)
Q Consensus 81 ~m~s~~ 86 (93)
.++++.
T Consensus 74 elF~dG 79 (144)
T 2w3l_A 74 ELFRDG 79 (144)
T ss_dssp HHTTTC
T ss_pred HHhcCC
Confidence 777654
No 33
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=36.50 E-value=60 Score=21.24 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=30.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcC
Q 034494 2 DDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHAN 38 (93)
Q Consensus 2 ~~~s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~ 38 (93)
.||.+....-...+|-+=|.-..|.+||+++|-.+.|
T Consensus 35 ~dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYG 71 (90)
T 2kw0_A 35 ADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYG 71 (90)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred hhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 3555566666778888889999999999999998876
No 34
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=36.20 E-value=56 Score=23.75 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhh--CCHHHHHHHHHhhcCCChhhHHHHHHHHHH----hcHHHHHHHHhchhhhhhHHHHHHHHHHHHh
Q 034494 12 VHHLIEECLVFN--MSKEECMEALSKHANIKPVITSTVWKELEK----ENKEFFEAYARKNAERATVMETRERIEKMLA 84 (93)
Q Consensus 12 VQ~LIErCLqly--Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~----eNpeFF~aY~~~~~e~~se~~~~~~iq~m~s 84 (93)
++..|-++|+.. -..+|-|+.|.. +-.+|=..|++ .++....+|..+.+.-..+....+|++-||.
T Consensus 157 ~~~ci~~Ll~~l~~~p~ee~vE~l~~-------lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~ 228 (234)
T 3rk6_A 157 LQVGLRELLNALFSNPMDDNLICAVK-------LLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLL 228 (234)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHH-------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHH-------HHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 444444444432 234666776664 45578888886 6888999999885543333344566666654
No 35
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=36.12 E-value=7.6 Score=28.86 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=0.0
Q ss_pred HhcHHHHHHHHh
Q 034494 53 KENKEFFEAYAR 64 (93)
Q Consensus 53 ~eNpeFF~aY~~ 64 (93)
.+|||||.-+-.
T Consensus 41 ~~~PdFf~~~~~ 52 (252)
T 3e98_A 41 SQHPEFFVEHDE 52 (252)
T ss_dssp ------------
T ss_pred HhCCHHHhhCHH
Confidence 578999987743
No 36
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=35.91 E-value=63 Score=19.62 Aligned_cols=26 Identities=12% Similarity=0.455 Sum_probs=22.7
Q ss_pred ChhhHHHHHHHHHHhcHHHHHHHHhc
Q 034494 40 KPVITSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 40 ~P~fT~~VW~~Le~eNpeFF~aY~~~ 65 (93)
+|..-..+.+.|.+.||+.++.....
T Consensus 23 NP~~L~~lLqql~~~nP~l~~~I~~n 48 (61)
T 2f4m_B 23 NPSLLPALLQQIGRENPQLLQQISQH 48 (61)
T ss_dssp CGGGHHHHHHHHHHHCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhHCHHHHHHHHHC
Confidence 79999999999999999999876443
No 37
>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}
Probab=35.11 E-value=17 Score=25.81 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHHHHHHhh-CCHHHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhchh
Q 034494 15 LIEECLVFN-MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNA 67 (93)
Q Consensus 15 LIErCLqly-Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~~~ 67 (93)
-+.|||.-| +.+-+-++.+.-+.+ +.....++..|-.+-.+||+.|..-..
T Consensus 71 R~Kr~l~aYlr~Rl~KI~~~~w~~~--~~l~~~~~~~LS~~E~~y~~~y~~ll~ 122 (196)
T 2q9q_C 71 RNRRCTVAYLYDRLLRIRALRWEYG--SILPNALRFHMAAEEMEWFNNYKRSLA 122 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--SSCCHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--ccCCHHHHhhCCHHHHHHHHHHHHHHH
Confidence 346899988 567777777776544 223345678888888999999976533
No 38
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=34.04 E-value=82 Score=21.73 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCh
Q 034494 5 SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKP 41 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P 41 (93)
|.+....|+.||..++-.-++.||--..|++..|-.|
T Consensus 39 spev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 75 (114)
T 2p6v_A 39 STETAANVXELVQNLLDGXIEAEDFTSRLYRELNSSP 75 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCC
T ss_pred ChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHcCCC
Confidence 6788899999999999999999999999998666554
No 39
>1tpx_A Prion protein, major prion protein; antibody, unknown function; 2.56A {Ovis aries} SCOP: d.6.1.1
Probab=32.20 E-value=26 Score=24.39 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHH-HHHHhhCC
Q 034494 5 SASYIHLVHHLIE-ECLVFNMS 25 (93)
Q Consensus 5 s~~~I~~VQ~LIE-rCLqlyMs 25 (93)
+..+++.+..||+ .|.+.||-
T Consensus 89 te~e~rvl~rvi~emC~~qy~~ 110 (121)
T 1tpx_A 89 TETDIKIMERVVEQMCITQYQR 110 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888887 79988873
No 40
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=31.15 E-value=58 Score=20.06 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhc
Q 034494 31 EALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 31 ~~L~~~a~I~P~fT~~VW~~Le~eN 55 (93)
..|.++++|.|..-....++|+++.
T Consensus 20 ~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 20 AQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4466778999998888888888864
No 41
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=30.98 E-value=50 Score=23.09 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHh----hCCHHHHHHHHH
Q 034494 10 HLVHHLIEECLVF----NMSKEECMEALS 34 (93)
Q Consensus 10 ~~VQ~LIErCLql----yMsk~Evv~~L~ 34 (93)
..+.++|.+||+. ..|-+|+++.|.
T Consensus 278 ~~l~~li~~~l~~dP~~Rps~~ell~~L~ 306 (318)
T 3lxp_A 278 AEVYHLMKNCWETEASFRPTFENLIPILK 306 (318)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence 3477899999875 456677777766
No 42
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=30.40 E-value=64 Score=20.28 Aligned_cols=28 Identities=11% Similarity=0.408 Sum_probs=23.4
Q ss_pred CCChhhHHHHHHHHHHhcHHHHHHHHhc
Q 034494 38 NIKPVITSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 38 ~I~P~fT~~VW~~Le~eNpeFF~aY~~~ 65 (93)
.=+|..-..|.+.|.+.||+.++.....
T Consensus 23 qqNP~lL~~lLqqL~~~NPqL~q~I~~n 50 (72)
T 1pve_A 23 QQNPSLLPALLQQIGRENPQLLQQISQH 50 (72)
T ss_dssp TTCGGGHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHCHHHHHHHHHHHHhHCHHHHHHHHHC
Confidence 3489999999999999999999876443
No 43
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=29.97 E-value=50 Score=22.88 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHH----hhCCHHHHHHHHHh
Q 034494 7 SYIHLVHHLIEECLV----FNMSKEECMEALSK 35 (93)
Q Consensus 7 ~~I~~VQ~LIErCLq----lyMsk~Evv~~L~~ 35 (93)
...+.+.+||.+||+ ...|-+|+++.|..
T Consensus 301 ~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~ 333 (342)
T 1b6c_B 301 EALRVMAKIMRECWYANGAARLTALRIKKTLSQ 333 (342)
T ss_dssp HHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence 455678999999995 45677788777764
No 44
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycoside hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus plantarum} SCOP: c.1.8.0 PDB: 4gze_A
Probab=29.39 E-value=19 Score=29.22 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCChhhHHHHH---HHHHH--------hcHHHHHHHHhc
Q 034494 5 SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVW---KELEK--------ENKEFFEAYARK 65 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW---~~Le~--------eNpeFF~aY~~~ 65 (93)
..+-++.-.+||..|+.. ||+|.+|..=| +.|++ +..++|..|-..
T Consensus 110 N~~Gl~fY~~lid~l~~~---------------GIeP~VTL~H~DlP~~L~~~yGGW~nr~~v~~F~~YA~~ 166 (481)
T 3qom_A 110 NEAGLQFYDDLFDECLKN---------------GIQPVVTLAHFEMPYHLVKQYGGWRNRKLIQFYLNFAKV 166 (481)
T ss_dssp CHHHHHHHHHHHHHHHHT---------------TCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC---------------CCeEEEEEccCCCCHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 345566677777776654 99999998655 34543 346678888554
No 45
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=27.96 E-value=1.1e+02 Score=20.88 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCCh
Q 034494 5 SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKP 41 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P 41 (93)
|.+....|..||..++---++.||--..|++..|-.|
T Consensus 24 ~pev~~~Vr~LVq~Ll~~~i~~EeFt~~Lq~~lns~p 60 (105)
T 2h7b_A 24 SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPL 60 (105)
T ss_dssp CHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHSSSSC
T ss_pred ChHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCC
Confidence 5778899999999999999999999999998666554
No 46
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=27.34 E-value=20 Score=29.34 Aligned_cols=46 Identities=30% Similarity=0.410 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCCChhhHHHHH---HHHH--------HhcHHHHHHHHhc
Q 034494 5 SASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVW---KELE--------KENKEFFEAYARK 65 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I~P~fT~~VW---~~Le--------~eNpeFF~aY~~~ 65 (93)
..+-|+.=.+||..|+.. ||+|.+|..=| +-|+ ++..++|..|-..
T Consensus 113 N~~Gl~fY~~lid~l~~~---------------GIeP~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~Ya~~ 169 (540)
T 4a3y_A 113 NKEGINYYNNLIDGLLAN---------------GIKPFVTLFHWDVPQALEDEYGGFLSPRIVDDFCEYAEL 169 (540)
T ss_dssp CHHHHHHHHHHHHHHHHT---------------TCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc---------------CCccceeccCCCCcHHHHhccCCcCChHHHHHHHHHHHH
Confidence 344455666666666543 99999987544 2333 4577888888654
No 47
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=26.93 E-value=82 Score=18.16 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=27.8
Q ss_pred hhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q 034494 22 FNMSKEECMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 22 lyMsk~Evv~~L~~~a~I~P~fT~~VW~~Le~e 54 (93)
-.+|..|+.+.|....++.|.-...+.+.|++.
T Consensus 22 ~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k 54 (82)
T 1p6r_A 22 SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK 54 (82)
T ss_dssp SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC
Confidence 468999999999876678998888888999875
No 48
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=26.88 E-value=95 Score=18.28 Aligned_cols=33 Identities=9% Similarity=-0.006 Sum_probs=28.3
Q ss_pred hhCCHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q 034494 22 FNMSKEECMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 22 lyMsk~Evv~~L~~~a~I~P~fT~~VW~~Le~e 54 (93)
-.++..|+.+.|.+..+|.|.-...+-+.|++.
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~ 53 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE 53 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Confidence 457888888888889999999999999999984
No 49
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=26.12 E-value=1.1e+02 Score=18.09 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=23.6
Q ss_pred hCCHHHHHHHHHh--hcCCChhhHHHHHHHHHHhc
Q 034494 23 NMSKEECMEALSK--HANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 23 yMsk~Evv~~L~~--~a~I~P~fT~~VW~~Le~eN 55 (93)
+||.+-.+++-.+ .-|.+|.|..++-+++++-|
T Consensus 5 ~LSDe~LiesY~~A~el~L~~dFI~LL~~Ei~RR~ 39 (48)
T 3fyr_A 5 KLSDELLIESYFKATEMNLNRDFIELIENEIKRRS 39 (48)
T ss_dssp TSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4566666655443 57899999999988887654
No 50
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=25.43 E-value=33 Score=25.46 Aligned_cols=33 Identities=12% Similarity=0.414 Sum_probs=24.4
Q ss_pred hcHHHHHHHHhchhhhhhHHHHHHHHHHHHhcccc
Q 034494 54 ENKEFFEAYARKNAERATVMETRERIEKMLANSTT 88 (93)
Q Consensus 54 eNpeFF~aY~~~~~e~~se~~~~~~iq~m~s~~~~ 88 (93)
.-.+||..|...|....+ +..+.|+.+|.+...
T Consensus 80 s~~~yFae~RL~REq~Rs--k~~E~L~eII~n~n~ 112 (197)
T 3tuf_A 80 ADDDLFTTYRLDLEDARS--KEREELNAIVSSDDA 112 (197)
T ss_dssp --CCHHHHHHHHHHHHHH--HHHHHHHHHHTCTTS
T ss_pred chHHHHHHHHHHHHHHHH--HHHHHHHHHHcCCCC
Confidence 345799999888777766 677889999976653
No 51
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=25.04 E-value=28 Score=22.06 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHhhcCC---ChhhHHHHHHHHHHhc---HHHHHHHHhc
Q 034494 8 YIHLVHHLIEECLVFNMSKEECMEALSKHANI---KPVITSTVWKELEKEN---KEFFEAYARK 65 (93)
Q Consensus 8 ~I~~VQ~LIErCLqlyMsk~Evv~~L~~~a~I---~P~fT~~VW~~Le~eN---peFF~aY~~~ 65 (93)
.|+.+-.-|=.=|...|.--+=|-.+....|. +|.=-..|...+.+.+ |+|.+..+..
T Consensus 20 ~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~a~~~p~~~e~i~r~ 83 (90)
T 2vkl_A 20 EIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERYSELGPDGKDLAILLLRL 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 34443333333333333333334444433332 4555566666666655 6666665543
No 52
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.04 E-value=84 Score=21.25 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHH----hhcCCChhhHHHHHHHHH
Q 034494 10 HLVHHLIEECLVFNMSKEECMEALS----KHANIKPVITSTVWKELE 52 (93)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~Evv~~L~----~~a~I~P~fT~~VW~~Le 52 (93)
..|..++|-|+....+.+|.|..+- ...|++|-... ...+|
T Consensus 45 ~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~en--L~~FE 89 (101)
T 2keb_A 45 ALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEI--LNSFE 89 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHH--HHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHH--HHHHH
Confidence 5789999999999999999887542 23466665443 34444
No 53
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=23.87 E-value=1.2e+02 Score=18.00 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=33.9
Q ss_pred HHHHHHHHHH-HHhhCCHHHHHHHHHhhcC-CChhhHHHHHHHHHHhc
Q 034494 10 HLVHHLIEEC-LVFNMSKEECMEALSKHAN-IKPVITSTVWKELEKEN 55 (93)
Q Consensus 10 ~~VQ~LIErC-LqlyMsk~Evv~~L~~~a~-I~P~fT~~VW~~Le~eN 55 (93)
..++.||++- =+-|+|-+|+.++|..... ++|.--..+...|++.+
T Consensus 9 ~~~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~g 56 (72)
T 2k6x_A 9 RRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHG 56 (72)
T ss_dssp HHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCC
Confidence 4678888744 4568999999999886544 78877777777776543
No 54
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=23.55 E-value=97 Score=21.38 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHhhcCCChhhH
Q 034494 5 SASYIHLVHHLIEECLVF----NMSKEECMEALSKHANIKPVIT 44 (93)
Q Consensus 5 s~~~I~~VQ~LIErCLql----yMsk~Evv~~L~~~a~I~P~fT 44 (93)
+......+.++|.+||+. ..|-+|+++.|... ++...+.
T Consensus 274 ~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~-~~~~~~~ 316 (326)
T 3uim_A 274 KDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD-GLAERWE 316 (326)
T ss_dssp CHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS-SCSSSCC
T ss_pred CHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc-chhhhhh
Confidence 355667899999999975 67889999999863 4444443
No 55
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=23.35 E-value=33 Score=27.64 Aligned_cols=37 Identities=38% Similarity=0.753 Sum_probs=22.9
Q ss_pred HHHHHHHhhcCCChhhHHHHH---HHHH-------HhcHHHHHHHHhc
Q 034494 28 ECMEALSKHANIKPVITSTVW---KELE-------KENKEFFEAYARK 65 (93)
Q Consensus 28 Evv~~L~~~a~I~P~fT~~VW---~~Le-------~eNpeFF~aY~~~ 65 (93)
.+++.|.+ .||+|.+|..=| +.|+ ++..++|..|-..
T Consensus 110 ~lid~l~~-~GIeP~vTL~H~dlP~~L~~~GGW~nr~~v~~F~~YA~~ 156 (458)
T 3ta9_A 110 RLVDNLLK-ANIRPMITLYHWDLPQALQDKGGWTNRDTAKYFAEYARL 156 (458)
T ss_dssp HHHHHHHH-TTCEEEEEEESSCCBHHHHTTTGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCeEEEEecCCCCCHhHHhcCCCCCHHHHHHHHHHHHH
Confidence 33444443 499999998544 2444 3455778888554
No 56
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=23.22 E-value=89 Score=18.74 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhh
Q 034494 14 HLIEECLVFNMSKEECMEALSKH 36 (93)
Q Consensus 14 ~LIErCLqlyMsk~Evv~~L~~~ 36 (93)
.||.+--.+.||.+||-+.|.-.
T Consensus 17 ~LI~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 17 ELMVEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 48888999999999999998743
No 57
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=22.32 E-value=82 Score=20.21 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHH
Q 034494 10 HLVHHLIEECLVFNMSKEECMEAL 33 (93)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~Evv~~L 33 (93)
..|..|+|-|+....+-+|+|..+
T Consensus 22 ~v~eKl~ElC~~y~~~~~e~V~ew 45 (78)
T 4e2i_2 22 ALIEKLVELCVQYGQNEEGMVGEL 45 (78)
T ss_dssp HHHHHHHTHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 588999999999999999998765
No 58
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=22.31 E-value=83 Score=20.00 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=20.7
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhc
Q 034494 30 MEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 30 v~~L~~~a~I~P~fT~~VW~~Le~eN 55 (93)
+..|.++++|.|.......+.|+++.
T Consensus 19 v~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 19 AKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34567788999998888888888765
No 59
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=22.27 E-value=1.3e+02 Score=19.01 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=19.4
Q ss_pred hCCHHHHHHHHHhhc----CCChhhHHHHHHHHHH
Q 034494 23 NMSKEECMEALSKHA----NIKPVITSTVWKELEK 53 (93)
Q Consensus 23 yMsk~Evv~~L~~~a----~I~P~fT~~VW~~Le~ 53 (93)
.+|..++...|..+. ++.+. ..+||+-|.+
T Consensus 108 ~~s~~~i~~~l~~~~~~~~g~~~S-~sTV~r~L~~ 141 (149)
T 1k78_A 108 TMFAWEIRDRLLAERVCDNDTVPS-VSSINRIIRT 141 (149)
T ss_dssp TCCHHHHHHHHHHTTSSCTTTSCC-HHHHHHHHHC
T ss_pred chhHHHHHHHHHHhcccccCCCcC-HHHHHHHHHH
Confidence 478899998887654 54433 3466666544
No 60
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=22.13 E-value=82 Score=20.57 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHh
Q 034494 29 CMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 29 vv~~L~~~a~I~P~fT~~VW~~Le~e 54 (93)
.++.|++..+|.|.+..-|..+|.+.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 77888899999999999999998874
No 61
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=21.97 E-value=2.5e+02 Score=21.72 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=30.4
Q ss_pred hhCCHHHHHHHHHhhcCCChh---------h-----HHHHHHHHHHhcHHHHHHHHhc
Q 034494 22 FNMSKEECMEALSKHANIKPV---------I-----TSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 22 lyMsk~Evv~~L~~~a~I~P~---------f-----T~~VW~~Le~eNpeFF~aY~~~ 65 (93)
+.++++|+..++..+ ||.+. + ...|...|++.||.|-.+-...
T Consensus 157 l~~~k~eI~~y~~~~-gl~~~~D~sn~~~~~~Rn~iR~~~lp~L~~~~p~~~~~l~r~ 213 (433)
T 1ni5_A 157 LARTRGELVQWARQY-DLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARS 213 (433)
T ss_dssp GSCCHHHHHHHHHHT-TCCCBCCCCGGGTTSHHHHHHHTHHHHHHHHCTTHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-CCCeEECCCCCCcccchHHHHHHHHHHHHHHCchHHHHHHHH
Confidence 368999999888764 66442 2 2357788999999887766544
No 62
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=21.92 E-value=48 Score=24.11 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHhcHHHHHHHHhc
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARK 65 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~eNpeFF~aY~~~ 65 (93)
++++++++.|.++++..|.+..+..++ .|++.|...
T Consensus 253 ~~~~~i~~fi~~~~~~~p~~~~ls~~~------~~~~~~~~~ 288 (298)
T 3ed3_A 253 INKNDISKFLRDTFSITPNEGPFSRRS------EYIAYLKTG 288 (298)
T ss_dssp CCHHHHHHHHHHHHTCCCSSSTTSHHH------HHHHHHHHC
T ss_pred CCHHHHHHHHHhhcCCCCCcCCCchHH------HHHHHHhcC
Confidence 789999999999999999998877443 777777544
No 63
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=21.86 E-value=88 Score=19.42 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhhcCCChhhHHHHHHHHHHh
Q 034494 24 MSKEECMEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 24 Msk~Evv~~L~~~a~I~P~fT~~VW~~Le~e 54 (93)
|.--|++..|.+..+|.|.-...+.+.||++
T Consensus 23 ~~gyel~~~l~~~~~i~~~tly~~L~~Le~~ 53 (108)
T 3l7w_A 23 SYGYDISQTIKLIASIKESTLYPILKKLEKA 53 (108)
T ss_dssp EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhCCCcChHHHHHHHHHHC
Confidence 3445889999888999999999999999984
No 64
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=21.74 E-value=1.2e+02 Score=19.82 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=7.0
Q ss_pred CCChhhHHHHHHHHHH
Q 034494 38 NIKPVITSTVWKELEK 53 (93)
Q Consensus 38 ~I~P~fT~~VW~~Le~ 53 (93)
+++|.+...+|+.+-+
T Consensus 74 ~l~~~~i~~if~~Ii~ 89 (114)
T 3rmi_A 74 HFDPDFAEKFLKFIIK 89 (114)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444433
No 65
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=21.05 E-value=1.6e+02 Score=18.36 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhCCHHH---HHHHHHhhcCCChhhHHHHHHHHHHhc
Q 034494 10 HLVHHLIEECLVFNMSKEE---CMEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 10 ~~VQ~LIErCLqlyMsk~E---vv~~L~~~a~I~P~fT~~VW~~Le~eN 55 (93)
+....+.+.-+...+...+ -...|.+++||.+.--.-+.+.|+.+.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~G 61 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDN 61 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3344444444444565554 457888899999999999999999854
No 66
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=20.81 E-value=84 Score=21.59 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHh----hCCHHHHHHHHHhhcCCChhhHHHHHH
Q 034494 10 HLVHHLIEECLVF----NMSKEECMEALSKHANIKPVITSTVWK 49 (93)
Q Consensus 10 ~~VQ~LIErCLql----yMsk~Evv~~L~~~a~I~P~fT~~VW~ 49 (93)
..+.++|.+||.. ..|-+|++..|.+. +.|.|+..-|.
T Consensus 267 ~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~--~~~~~~~~~~~ 308 (322)
T 1p4o_A 267 DMLFELMRMCWQYNPKMRPSFLEIISSIKEE--MEPGFREVSFY 308 (322)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG--SCTTHHHHCST
T ss_pred HHHHHHHHHHcCCCcccCcCHHHHHHHHHHh--hccCCcccccc
Confidence 3478899999964 57888999988864 45777765544
No 67
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=20.27 E-value=1e+02 Score=20.22 Aligned_cols=25 Identities=8% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHh
Q 034494 30 MEALSKHANIKPVITSTVWKELEKE 54 (93)
Q Consensus 30 v~~L~~~a~I~P~fT~~VW~~Le~e 54 (93)
++.|.+..+|.|.+..-|..+|.+.
T Consensus 31 ~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 31 LKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5677888999999999999999874
No 68
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=20.24 E-value=1.2e+02 Score=20.60 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHh----hCCHHHHHHHHHh
Q 034494 6 ASYIHLVHHLIEECLVF----NMSKEECMEALSK 35 (93)
Q Consensus 6 ~~~I~~VQ~LIErCLql----yMsk~Evv~~L~~ 35 (93)
......+.++|.+||+. ..|-+|+++.|.+
T Consensus 270 ~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~ 303 (307)
T 2nru_A 270 STSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303 (307)
T ss_dssp HHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHH
Confidence 34456788899999976 3455666666553
No 69
>4hz8_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosid barrel, carbohydrate/sugar binding; HET: BGC; 1.14A {Uncultured bacterium} PDB: 4hz7_A* 4hz6_A* 3fj0_A* 3cmj_A 3fiz_A* 3fiy_A*
Probab=20.14 E-value=37 Score=27.25 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCCChhhHHHHH---HHHH-------HhcHHHHHHHHhc
Q 034494 27 EECMEALSKHANIKPVITSTVW---KELE-------KENKEFFEAYARK 65 (93)
Q Consensus 27 ~Evv~~L~~~a~I~P~fT~~VW---~~Le-------~eNpeFF~aY~~~ 65 (93)
+.+|+.|.+ +||+|.+|..=| +.|+ ++..++|..|-..
T Consensus 101 ~~lid~l~~-~GI~p~vtL~H~dlP~~L~~~GGW~nr~~v~~F~~Ya~~ 148 (444)
T 4hz8_A 101 RRLVEGLHK-RDILPMATLYHWDLPQWVEDEGGWLSRESASRFAEYTHA 148 (444)
T ss_dssp HHHHHHHHH-TTCEEEEEEESSCCBHHHHHTTGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCEEEEEeCCCCCCHHHhhCcCCCChHHHHHHHHHHHH
Confidence 344555554 499999987432 1233 4556788888654
No 70
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=20.11 E-value=1.1e+02 Score=19.09 Aligned_cols=26 Identities=8% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhc
Q 034494 30 MEALSKHANIKPVITSTVWKELEKEN 55 (93)
Q Consensus 30 v~~L~~~a~I~P~fT~~VW~~Le~eN 55 (93)
+..|.+..+|.|.+..-+.+.|++..
T Consensus 29 ~~ela~~~~i~~~~v~~il~~L~~~G 54 (129)
T 2y75_A 29 LKSIAQTNNLSEHYLEQLVSPLRNAG 54 (129)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45677788999999999999999853
Done!