BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034496
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSF
NCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL

High Scoring Gene Products

Symbol, full name Information P value
PGR7
AT3G21200 		protein from Arabidopsis thaliana 6.1e-23

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034496
        (93 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2094741 - symbol:PGR7 "AT3G21200" species:3702...   265  6.1e-23   1


>TAIR|locus:2094741 [details] [associations]
            symbol:PGR7 "AT3G21200" species:3702 "Arabidopsis
            thaliana" [GO:0009507 "chloroplast" evidence=IDA] [GO:0009767
            "photosynthetic electron transport chain" evidence=IMP] [GO:0009791
            "post-embryonic development" evidence=IMP] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP]
            [GO:0043495 "protein anchor" evidence=IDA] [GO:0070455 "positive
            regulation of heme biosynthetic process" evidence=IMP]
            InterPro:IPR012349 GO:GO:0009570 EMBL:CP002686 EMBL:AB023045
            GO:GO:0016491 GO:GO:0009791 GO:GO:0043495 GO:GO:0009534
            GO:GO:0010181 GO:GO:0009767 Gene3D:2.30.110.10 SUPFAM:SSF50475
            GO:GO:0033014 GO:GO:0070455 UniGene:At.70384 UniGene:At.8075
            EMBL:AY062654 EMBL:BT002574 IPI:IPI00538821 RefSeq:NP_566678.1
            ProteinModelPortal:Q9LU39 IntAct:Q9LU39 STRING:Q9LU39 PRIDE:Q9LU39
            EnsemblPlants:AT3G21200.1 GeneID:821673 KEGG:ath:AT3G21200
            TAIR:At3g21200 InParanoid:Q9LU39 OMA:AWEVEKS PhylomeDB:Q9LU39
            ProtClustDB:CLSN2688626 ArrayExpress:Q9LU39 Genevestigator:Q9LU39
            Uniprot:Q9LU39
        Length = 317

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/74 (70%), Positives = 61/74 (82%)

Query:    15 VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNY 74
             V E KMIW+DRLGFD+R+  P +G++DVRIPFP EVTDEKGAKSSFN MSQ AWEVEK+Y
Sbjct:   233 VSETKMIWMDRLGFDLRVWSP-RGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSY 291

Query:    75 QSPNFKKVKHLKQI 88
                +F KVK LKQ+
Sbjct:   292 CPADFNKVKLLKQV 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.45    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.51u 0.12s 10.63t   Elapsed:  00:00:00
  Total cpu time:  10.51u 0.12s 10.63t   Elapsed:  00:00:00
  Start:  Thu May  9 17:16:42 2013   End:  Thu May  9 17:16:42 2013

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