BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034496
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L7R|A Chain A, Tyr44phe Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|1JU3|A Chain A, Bacterial Cocaine Esterase Complex With Transition State
Analog
pdb|1JU4|A Chain A, Bacterial Cocaine Esterase Complex With Product
Length = 583
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|1L7Q|A Chain A, Ser117ala Mutant Of Bacterial Cocaine Esterase Coce
Length = 574
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3PUI|A Chain A, Cocaine Esterase With Mutations G4c, S10c
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3I2J|A Chain A, Cocaine Esterase, Wild Type, Without A Ligand
pdb|3I2K|A Chain A, Cocaine Esterase, Wild Type, Bound To A Dtt Adduct
pdb|3PUH|A Chain A, Cocaine Esterase, Wild-Type Biologically Active Dimer
pdb|3PUH|B Chain B, Cocaine Esterase, Wild-Type Biologically Active Dimer
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3I2I|A Chain A, Cocaine Esterase With Mutation T172r, Bound To Dtt Adduct
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3I2H|A Chain A, Cocaine Esterase With Mutation L169k, Bound To Dtt Adduct
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3I2G|A Chain A, Cocaine Esterase With Mutation G173q, Bound To Dtt Adduct
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3I2F|A Chain A, Cocaine Esterase With Mutations T172r G173Q, BOUND TO DTT
ADDUCT
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|3IDA|A Chain A, Thermostable Cocaine Esterase With Mutations L169k And
G173q, Bound To Dtt Adduct
Length = 587
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 9 FQWSKQVLEAKMIWVD--RLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQ 66
F WS Q W++ R G+ V I +GLF F V DE A+ + + + +Q
Sbjct: 50 FAWSTQSTN----WLEFVRDGYAVVIQ-DTRGLFASEGEFVPHVDDEADAEDTLSWILEQ 104
Query: 67 AW 68
AW
Sbjct: 105 AW 106
>pdb|1U4E|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Girk1 Channel
Length = 212
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 5 ILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 64
I K S+Q E + + +D+L DV S LF V P + AKS F +S
Sbjct: 69 IRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVS---PLTICHVIDAKSPFYDLS 125
Query: 65 QQAWEVEK 72
Q++ + E+
Sbjct: 126 QRSMQTEQ 133
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 12 SKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVE 71
S+Q E + + +D+L DV S LF V P + AKS F +SQ++ + E
Sbjct: 182 SRQTPEGEFLPLDQLELDVGFSTGADQLFLVS---PLTICHVIDAKSPFYDLSQRSMQTE 238
Query: 72 K 72
+
Sbjct: 239 Q 239
>pdb|3K6N|A Chain A, Crystal Structure Of The S225e Mutant Kir3.1 Cytoplasmic
Pore Domain
Length = 207
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 5 ILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 64
I K S+Q E + + +D+L DV S LF V P + AKS F +S
Sbjct: 64 IRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVS---PLTICHVIDAKSPFYDLS 120
Query: 65 QQAWEVEK 72
Q++ + E+
Sbjct: 121 QRSMQTEQ 128
>pdb|1N9P|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of G-protein
Activated Inward Rectifier Potassium Channel 1
Length = 207
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 5 ILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 64
I K S+Q E + + +D+L DV S LF V P + AKS F +S
Sbjct: 64 IRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVS---PLTICHVIDAKSPFYDLS 120
Query: 65 QQAWEVEK 72
Q++ + E+
Sbjct: 121 QRSXQTEQ 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,845,631
Number of Sequences: 62578
Number of extensions: 96443
Number of successful extensions: 372
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 15
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)