Query 034496
Match_columns 93
No_of_seqs 105 out of 182
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:06:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2arz_A Hypothetical protein PA 99.5 1.2E-14 4E-19 106.3 5.6 63 4-71 179-241 (247)
2 3gas_A Heme oxygenase; FMN-bin 99.5 2.2E-14 7.6E-19 108.8 7.2 63 4-70 18-81 (259)
3 3swj_A CHUZ, putative uncharac 99.5 5.1E-14 1.7E-18 105.8 5.1 62 4-70 19-81 (251)
4 3dnh_A Uncharacterized protein 99.3 1.4E-12 4.7E-17 97.7 4.7 58 4-70 201-258 (258)
5 1unn_C POL IV, DNA polymerase 70.8 2.4 8.4E-05 27.0 2.2 33 43-75 10-42 (115)
6 3bq0_A POL IV, DBH, DNA polyme 51.9 11 0.00039 28.2 3.2 49 21-73 231-279 (354)
7 3ic8_A Uncharacterized GST-lik 50.9 20 0.00068 25.7 4.2 37 10-48 266-302 (310)
8 4f4y_A POL IV, DNA polymerase 42.3 22 0.00076 27.0 3.5 36 38-73 244-279 (362)
9 1jx4_A DNA polymerase IV (fami 40.5 28 0.00096 26.0 3.8 37 38-74 243-279 (352)
10 2jrw_A Cyclic extended PEP.1; 37.7 9.4 0.00032 19.5 0.5 9 70-78 13-21 (26)
11 2aq4_A DNA repair protein REV1 37.4 49 0.0017 25.7 4.8 36 38-73 317-352 (434)
12 4hu2_A Probable conserved lipo 33.3 12 0.00041 27.2 0.7 22 39-60 115-136 (198)
13 3k9o_B Ubiquitin, UBB+1; E2-25 32.7 48 0.0016 19.7 3.4 35 27-64 1-35 (96)
14 3gqc_A DNA repair protein REV1 31.3 66 0.0023 26.0 4.8 36 38-73 381-416 (504)
15 2v3s_A Serine/threonine-protei 30.6 1E+02 0.0034 20.3 4.8 35 28-62 5-39 (96)
16 2kp7_A Crossover junction endo 30.0 23 0.00079 22.3 1.5 32 60-92 36-67 (87)
17 1qz9_A Kynureninase; kynurenin 27.5 86 0.0029 22.4 4.4 31 39-69 371-401 (416)
18 4dez_A POL IV 1, DNA polymeras 25.1 15 0.00052 27.6 0.0 32 42-73 249-280 (356)
19 2k8q_A Protein SHQ1; beta-sand 25.0 25 0.00087 24.2 1.1 27 23-54 35-61 (134)
20 3nnk_A Ureidoglycine-glyoxylat 24.5 95 0.0032 22.0 4.2 45 26-70 346-390 (411)
21 3tur_A Mycobacteria tuberculos 24.2 27 0.00091 26.5 1.2 23 38-60 45-67 (287)
22 4e1o_A HDC, histidine decarbox 24.1 1.3E+02 0.0046 22.8 5.2 33 38-70 446-478 (481)
23 2w7n_A TRFB transcriptional re 22.5 76 0.0026 20.5 3.1 28 57-84 48-76 (101)
24 1x60_A Sporulation-specific N- 22.3 1.2E+02 0.0041 17.4 4.3 35 27-65 34-68 (79)
25 2hiq_A Hypothetical protein YD 21.8 67 0.0023 21.5 2.7 25 40-66 12-36 (113)
26 4ecq_A DNA polymerase ETA; tra 21.8 90 0.0031 24.3 3.9 36 38-73 320-357 (435)
27 3q3f_A Ribonuclease/ubiquitin 21.6 1.6E+02 0.0054 20.7 4.9 42 19-63 97-138 (189)
28 1sif_A Ubiquitin; hydrophobic 21.2 1.1E+02 0.0038 18.0 3.5 35 26-63 8-42 (88)
29 3k40_A Aromatic-L-amino-acid d 21.1 1.7E+02 0.0057 22.3 5.2 33 38-70 439-471 (475)
30 2qma_A Diaminobutyrate-pyruvat 20.2 1.6E+02 0.0054 22.3 4.9 32 38-69 464-495 (497)
No 1
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1
Probab=99.51 E-value=1.2e-14 Score=106.26 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=56.8
Q ss_pred hhhhhhhcCcccceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHhh
Q 034496 4 TILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVE 71 (93)
Q Consensus 4 ~~~~~~~~~~~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~ 71 (93)
..|++++.|+..+.|+|++||++||||++. ...+||||++|++|.+++|.+|++|+++||+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~iD~~G~~l~~~-----~~~~Ri~F~~~~~~~~~~~~~l~~m~~~a~~~~ 241 (247)
T 2arz_A 179 AHYVELAGLPAHAAAQLAGIDTEGFHLRIG-----QGLHWLPFPAACGNPGAVRQALVQLARAERWPT 241 (247)
T ss_dssp HHHHHHHCCCCSSCCEEEEECSSEEEEEET-----TEEEEEECSSCCCSHHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHhCCCCccceEEEEEccCCCEEEEC-----CEEEEEeCCCcCCCHHHHHHHHHHHHHHhHhhc
Confidence 467889999988889999999999999992 378999999999999999999999999998654
No 2
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=99.51 E-value=2.2e-14 Score=108.83 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=58.0
Q ss_pred hhhhhhhcCcc-cceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496 4 TILMKFQWSKQ-VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 70 (93)
Q Consensus 4 ~~~~~~~~~~~-at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~ 70 (93)
.+|++++.|++ +++|+|++||++||+|++ + +...+||||++|++|++|+|.+||+|+++|+++
T Consensus 18 ~~y~~~~~~~~~~~~a~m~~iD~~G~~l~~---~-~~~~~ri~F~~~~~~~~~~r~~lV~m~~~A~~~ 81 (259)
T 3gas_A 18 KGLLKKFGQVHHAENVAFKSVDSQGIVIGY---N-NNQTLRIEFNHEVKDPKDYKNATIELCQSVEKT 81 (259)
T ss_dssp HHHHHHHHCCCSCCSCEEEEEETTEEEEEE---T-TTEEEEEECSSCCCCGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCceEEEEEecCccEEEE---C-CceEEEEeCCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 46899999995 789999999999999999 2 468999999999999999999999999999976
No 3
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=99.45 E-value=5.1e-14 Score=105.76 Aligned_cols=62 Identities=23% Similarity=0.204 Sum_probs=54.6
Q ss_pred hhhhhhhcCcc-cceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496 4 TILMKFQWSKQ-VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 70 (93)
Q Consensus 4 ~~~~~~~~~~~-at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~ 70 (93)
.+|++++.|+. +++|+|++||++||+|.+ | +...+||||++|+ |++++|.+||+|+++|+..
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~iD~~g~~l~~---~-~~~~~ri~F~~~~-~~~~~r~~lv~m~~~a~~~ 81 (251)
T 3swj_A 19 VDLCKKFGGIEQVQDVFLKSVDFNGLDLVY---N-DKENLRVEFPKKA-DENTIKDTIISLCMSAKSE 81 (251)
T ss_dssp HHHHHHHTCCSCCC-CEEEEEETTEEEEEC-------CEEEEECSSCC-CTTTHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCCCCCCeeEEEEEecccCEEEe---C-CceEEEEeCCCCC-CHHHHHHHHHHHHHhcccc
Confidence 47899999995 889999999999999998 2 4689999999999 9999999999999999876
No 4
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}
Probab=99.30 E-value=1.4e-12 Score=97.71 Aligned_cols=58 Identities=16% Similarity=-0.005 Sum_probs=51.4
Q ss_pred hhhhhhhcCcccceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496 4 TILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 70 (93)
Q Consensus 4 ~~~~~~~~~~~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~ 70 (93)
..|++ +.|+.++.|+|+|||++||||++ +...+||||+ +|.+++|++|++|+++|+++
T Consensus 201 ~~~~~-~~~~~~~~a~~~~vD~~G~dl~~-----~~~~~Ri~F~---~d~~~~r~~lv~m~~~ar~~ 258 (258)
T 3dnh_A 201 SRLAV-LAGAKTGRWKITSIDPDGIDLAS-----ASDLARLWFA---ERVETLKQFEKALAQLLKGS 258 (258)
T ss_dssp HHHHH-HTTCCCSSCEEEEEETTEEEEEC-----SSCEEEEECS---SCCCSHHHHHHHHHHHTC--
T ss_pred HHHHH-hCCCCCCcEEEEEEccCcCEEEE-----CCEEEEeeCC---CCHHHHHHHHHHHHHHhhcC
Confidence 35777 88998899999999999999998 3589999999 99999999999999999864
No 5
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=70.78 E-value=2.4 Score=26.99 Aligned_cols=33 Identities=0% Similarity=-0.050 Sum_probs=29.0
Q ss_pred EecCCcccCChHHHHHHHHHHHHHHHHhhcCCC
Q 034496 43 RIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQ 75 (93)
Q Consensus 43 RIpF~~pvtD~~dar~aLV~M~r~A~e~~r~~~ 75 (93)
--.|+++++|.++++.+|..|+..++++-|.-.
T Consensus 10 e~Tf~~d~~~~~~l~~~l~~l~~~v~~rLr~~~ 42 (115)
T 1unn_C 10 ERTMAEDIHHWSECEAIIERLYPELERRLAKVK 42 (115)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceECCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456899999999999999999999999888644
No 6
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=51.91 E-value=11 Score=28.23 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=39.4
Q ss_pred eeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHhhcC
Q 034496 21 IWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73 (93)
Q Consensus 21 lgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~r~ 73 (93)
.|+|..-+.... . ........|+.+++|.+++...|..|+..+.++-|.
T Consensus 231 ~G~d~~~v~~~~---~-ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~ 279 (354)
T 3bq0_A 231 QNKYSEPVENKS---K-IPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (354)
T ss_dssp TTCCCCCCCSEE---C-CCEEEEEEEEEEECCHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCcCCC---C-ceeEEeEeCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 345555444333 2 568889999999999999999999999999999887
No 7
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=50.87 E-value=20 Score=25.67 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=29.9
Q ss_pred hcCcccceeEEeeeecCccEEEEEcCCCCeeeEEecCCc
Q 034496 10 QWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPT 48 (93)
Q Consensus 10 ~~~~~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~ 48 (93)
..|.+.+.-+++++|+.-.-++.+.++ + .+|||-|||
T Consensus 266 d~g~~~~~g~l~~~~~~~~~~~~~~~~-~-~~~~vh~pr 302 (310)
T 3ic8_A 266 DYGVEAVEGELMFTGREELILRREDNR-A-GVVHVHFPR 302 (310)
T ss_dssp SCGGGCEEEEEEEECSSCEEEEEEETT-T-EEEEEEECS
T ss_pred cCCCCCCceEEEEecCcEEEEEEeCCC-C-CeEEEEcCC
Confidence 346667788999999999999998765 3 389999987
No 8
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=42.33 E-value=22 Score=27.04 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=33.1
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHHhhcC
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~r~ 73 (93)
........|+.+++|.+++...|..|+..+.++-|.
T Consensus 244 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~ 279 (362)
T 4f4y_A 244 KSIGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNG 279 (362)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCSS
T ss_pred cceEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999887
No 9
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=40.45 E-value=28 Score=26.02 Aligned_cols=37 Identities=3% Similarity=-0.060 Sum_probs=33.9
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHHhhcCC
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNY 74 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~r~~ 74 (93)
........|+.+++|.+++...|..|+....++-|.-
T Consensus 243 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rL~~~ 279 (352)
T 1jx4_A 243 KSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKR 279 (352)
T ss_dssp CEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778889999999999999999999999999988865
No 10
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=37.67 E-value=9.4 Score=19.54 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=7.4
Q ss_pred hhcCCCCCC
Q 034496 70 VEKNYQSPN 78 (93)
Q Consensus 70 ~~r~~~p~~ 78 (93)
+||.|+|++
T Consensus 13 serpyhppp 21 (26)
T 2jrw_A 13 SERPYHPPP 21 (26)
T ss_dssp CSSSCCSCS
T ss_pred ccCCCCCCC
Confidence 588999876
No 11
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=37.42 E-value=49 Score=25.71 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=32.7
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHHhhcC
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~r~ 73 (93)
........|+.++++.+++...|..|+....++-|.
T Consensus 317 ksi~~~~tf~~~~~~~~~l~~~l~~l~~~l~~rLr~ 352 (434)
T 2aq4_A 317 KSLSIDINWGIRFKNITQVDLFIERGCQYLLEKLNE 352 (434)
T ss_dssp CCEEEEECSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999888765
No 12
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=33.28 E-value=12 Score=27.25 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=18.2
Q ss_pred eeeEEecCCcccCChHHHHHHH
Q 034496 39 LFDVRIPFPTEVTDEKGAKSSF 60 (93)
Q Consensus 39 ~~~vRIpF~~pvtD~~dar~aL 60 (93)
...|-|-|++|++|+..+.++|
T Consensus 115 g~Pv~v~F~~pV~draave~ai 136 (198)
T 4hu2_A 115 GEPVAIRFDENIADRGAAEKAI 136 (198)
T ss_dssp TCCEEEEESSCCSCHHHHHHTE
T ss_pred CceEEEECCCCCCChHHhhccc
Confidence 4689999999999988876654
No 13
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=32.73 E-value=48 Score=19.66 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHH
Q 034496 27 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 64 (93)
Q Consensus 27 GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~ 64 (93)
||.+.|...++....+.++ |-++..+++..|-...
T Consensus 1 gm~i~vk~~~g~~~~~~v~---~~~TV~~LK~~i~~~~ 35 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDKE 35 (96)
T ss_dssp -CEEEEEETTCCEEEEECC---TTCBHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCEEEEEEC---CCCCHHHHHHHHHhhh
Confidence 7888898754366677665 4556777777776543
No 14
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=31.31 E-value=66 Score=26.01 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=32.5
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHHhhcC
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~r~ 73 (93)
........|+.++++.+++...|..|+...+++.|.
T Consensus 381 KSi~~e~tf~~d~~~~~~l~~~L~~La~~l~~rLr~ 416 (504)
T 3gqc_A 381 KSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEA 416 (504)
T ss_dssp CCEEEEECSSCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeeeeccCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999988764
No 15
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=30.65 E-value=1e+02 Score=20.31 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHH
Q 034496 28 FDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNC 62 (93)
Q Consensus 28 mdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~ 62 (93)
+-||.......-.++|++|..=-.+++.+.++|+.
T Consensus 5 LvLRlRn~~rELnDIrFeF~~g~DTaegiA~ELv~ 39 (96)
T 2v3s_A 5 LVLRLRNSKKELNDIRFEFTPGRDTAEGVSQELIS 39 (96)
T ss_dssp EEEEEECTTSCEEEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEeccccchhcceEEEeecCCCcHHHHHHHHHH
Confidence 34666554447789999999999999999999875
No 16
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=29.95 E-value=23 Score=22.30 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccccccCCC
Q 034496 60 FNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRG 92 (93)
Q Consensus 60 LV~M~r~A~e~~r~~~p~~~~~~~~~~~~~~~~ 92 (93)
...-++.|-++-++| |.++.=..+++++++-|
T Consensus 36 ~~~~Y~KA~~sLk~~-P~~i~s~~e~~~L~giG 67 (87)
T 2kp7_A 36 TRFVFQKALRSLQRY-PLPLRSGKEAKILQHFG 67 (87)
T ss_dssp THHHHHHHHHHHHHC-CSCCCSHHHHHTCTTTC
T ss_pred HHHHHHHHHHHHHhC-CCCCCCHHHHHHhhccc
Confidence 345678888999999 99999999999988754
No 17
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=27.50 E-value=86 Score=22.45 Aligned_cols=31 Identities=10% Similarity=-0.078 Sum_probs=25.1
Q ss_pred eeeEEecCCcccCChHHHHHHHHHHHHHHHH
Q 034496 39 LFDVRIPFPTEVTDEKGAKSSFNCMSQQAWE 69 (93)
Q Consensus 39 ~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e 69 (93)
...+||.|.+...+.+|+...+..|.+...+
T Consensus 371 ~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 371 PRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp TTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 3579999997788999999988888776544
No 18
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=25.09 E-value=15 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEecCCcccCChHHHHHHHHHHHHHHHHhhcC
Q 034496 42 VRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73 (93)
Q Consensus 42 vRIpF~~pvtD~~dar~aLV~M~r~A~e~~r~ 73 (93)
.-..|+++++|.+++...|..|+..+.++.|.
T Consensus 249 ~~~tf~~~~~~~~~l~~~l~~la~~~~~rLr~ 280 (356)
T 4dez_A 249 HVVTFPQDLTERREMDSAVRDLALQTLAEIVE 280 (356)
T ss_dssp --------------------------------
T ss_pred ccccCCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999988887664
No 19
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=24.98 E-value=25 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=18.6
Q ss_pred eecCccEEEEEcCCCCeeeEEecCCcccCChH
Q 034496 23 VDRLGFDVRISCPQKGLFDVRIPFPTEVTDEK 54 (93)
Q Consensus 23 IDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~ 54 (93)
||..=|++++ ..+-+||.||++|.|.+
T Consensus 35 v~~~~F~F~~-----~PYyLRL~LP~~V~e~~ 61 (134)
T 2k8q_A 35 IQENMIIFHL-----SPYYLRLRFPHELIDDE 61 (134)
T ss_dssp ECSSSEEECS-----SSSCEEECCSSCEECCS
T ss_pred EeCCEEEEec-----CCeEEEecCCCeeecCC
Confidence 4444445544 55999999999995544
No 20
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=24.46 E-value=95 Score=22.03 Aligned_cols=45 Identities=9% Similarity=-0.043 Sum_probs=31.3
Q ss_pred CccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496 26 LGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 70 (93)
Q Consensus 26 ~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~ 70 (93)
.|+.++..........+||.|....++.+++...+..|.+...+.
T Consensus 346 ~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 346 FGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp HSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 466665432111335799999888888999999888887776554
No 21
>3tur_A Mycobacteria tuberculosis LD-transpeptidase type; protein-peptidoglycan complex, peptidoglycan binding protein; HET: 0JC DGL 6CL; 1.72A {Mycobacterium tuberculosis} PDB: 3u1p_A 3u1q_A 3vae_A 3tx4_A 4huc_A
Probab=24.15 E-value=27 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=19.2
Q ss_pred CeeeEEecCCcccCChHHHHHHH
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSF 60 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aL 60 (93)
-...|-|.|++|++|++.+.++|
T Consensus 45 v~~pv~~~F~~~v~dr~~ve~~i 67 (287)
T 3tur_A 45 VGEPVAIRFDENIADRGAAEKAI 67 (287)
T ss_dssp TTCCEEEEESSCCSCHHHHHHHE
T ss_pred ecCeEEEECCCCCcchHhhccee
Confidence 34689999999999988877766
No 22
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=24.09 E-value=1.3e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=28.6
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 70 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~ 70 (93)
+...+|+.+..+-++.+|+...+-.+.+.+.+.
T Consensus 446 g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 446 DKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998877654
No 23
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=22.50 E-value=76 Score=20.46 Aligned_cols=28 Identities=11% Similarity=0.365 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHh-hcCCCCCCcccccc
Q 034496 57 KSSFNCMSQQAWEV-EKNYQSPNFKKVKH 84 (93)
Q Consensus 57 r~aLV~M~r~A~e~-~r~~~p~~~~~~~~ 84 (93)
|..+..|.+.|++. +..-.|+.|.+|+-
T Consensus 48 R~~VsrlL~~Ar~~~~~~~~P~g~~rv~v 76 (101)
T 2w7n_A 48 RGAVSQAVHRVWAAFEDKNLPEGYARVTA 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeeEEee
Confidence 56788899999988 23345999998864
No 24
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=22.32 E-value=1.2e+02 Score=17.38 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHH
Q 034496 27 GFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQ 65 (93)
Q Consensus 27 GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r 65 (93)
|+...+...+ +.+.||+. |..|.+++...+..|-+
T Consensus 34 g~~~~i~~~~-~~yRV~vG---pf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 34 GFDSIVLLKD-GLYKVQIG---AFSSKDNADTLAARAKN 68 (79)
T ss_dssp TCCEEEEEET-TEEEEEEE---EESSHHHHHHHHHHHHH
T ss_pred CCCeEEecCC-cEEEEEEC---CcCCHHHHHHHHHHHHH
Confidence 5555555445 67788884 88999999888877744
No 25
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=21.79 E-value=67 Score=21.51 Aligned_cols=25 Identities=4% Similarity=0.218 Sum_probs=20.6
Q ss_pred eeEEecCCcccCChHHHHHHHHHHHHH
Q 034496 40 FDVRIPFPTEVTDEKGAKSSFNCMSQQ 66 (93)
Q Consensus 40 ~~vRIpF~~pvtD~~dar~aLV~M~r~ 66 (93)
--|.+||+.|. .+++...+..+++.
T Consensus 12 lqV~F~~~gP~--geE~~~~f~~lA~s 36 (113)
T 2hiq_A 12 LQLHFAFNGPF--GDAMAEQLKPLAES 36 (113)
T ss_dssp EEEEEECCCCC--HHHHHHHSHHHHHH
T ss_pred EEEEecCCCch--HHHHHHHHHHHHHH
Confidence 45799999997 88888888888765
No 26
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=21.77 E-value=90 Score=24.27 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=31.7
Q ss_pred CeeeEEecCCcc--cCChHHHHHHHHHHHHHHHHhhcC
Q 034496 38 GLFDVRIPFPTE--VTDEKGAKSSFNCMSQQAWEVEKN 73 (93)
Q Consensus 38 ~~~~vRIpF~~p--vtD~~dar~aLV~M~r~A~e~~r~ 73 (93)
........|+++ +++.++++..|..|+..+.++-|.
T Consensus 320 ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~ 357 (435)
T 4ecq_A 320 KTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTK 357 (435)
T ss_dssp SCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 567788899986 899999999999999999888764
No 27
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=21.61 E-value=1.6e+02 Score=20.72 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=31.1
Q ss_pred EEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHH
Q 034496 19 KMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 63 (93)
Q Consensus 19 rMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M 63 (93)
.....|.|.|.+.|....+....+.++ |=++..+++..|-..
T Consensus 97 ~y~T~d~~eMqI~VKtl~Gkt~~l~V~---~s~TV~~LK~kI~~~ 138 (189)
T 3q3f_A 97 IYKTTDHYGGQIFVKTLTGKTITLEVE---PSDTIENVKAKIQDK 138 (189)
T ss_dssp EEEESCCCCEEEEEECTTSCEEEEEEC---TTCBHHHHHHHHHHH
T ss_pred EEEcccccceeeeeecCCCCEEEEEeC---CCCcHHHHHHHHHhc
Confidence 456789999999999855467777776 556677777777654
No 28
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=21.20 E-value=1.1e+02 Score=18.04 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHH
Q 034496 26 LGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCM 63 (93)
Q Consensus 26 ~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M 63 (93)
.||.+.|..-.+....+.++ |-++..+++..|-..
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~---~~~TV~~LK~~I~~~ 42 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEME---PSDTIENLKAKIQDK 42 (88)
T ss_dssp --CEEEEEETTSCEEEEECC---TTSBHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCEEEEEEC---CCChHHHHHHHHHHH
Confidence 58999887755355566555 456777888777654
No 29
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=21.07 E-value=1.7e+02 Score=22.32 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=28.8
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV 70 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~ 70 (93)
+...+|+.+..|-++.+|+...+-.+.+.+.+.
T Consensus 439 g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 439 DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999998877654
No 30
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=20.21 E-value=1.6e+02 Score=22.27 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=26.6
Q ss_pred CeeeEEecCCcccCChHHHHHHHHHHHHHHHH
Q 034496 38 GLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWE 69 (93)
Q Consensus 38 ~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e 69 (93)
+...+||.|..+.++.+|+...+-.|.+.+.+
T Consensus 464 g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 464 GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999888776543
Done!