BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034497
MASKFSNSFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRD
PNTGNWIPESQFNQIDAADLRDQLLPKIKKNDS

High Scoring Gene Products

Symbol, full name Information P value
SAG21
AT4G02380 		protein from Arabidopsis thaliana 6.3e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034497
        (93 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2133279 - symbol:SAG21 "AT4G02380" species:370...    95  6.3e-05   1


>TAIR|locus:2133279 [details] [associations]
            symbol:SAG21 "AT4G02380" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0009409 "response to cold" evidence=IEP;RCA]
            [GO:0006979 "response to oxidative stress" evidence=RCA;IMP]
            [GO:0042631 "cellular response to water deprivation"
            evidence=IEP;RCA] [GO:0000165 "MAPK cascade" evidence=RCA]
            [GO:0006612 "protein targeting to membrane" evidence=RCA]
            [GO:0007154 "cell communication" evidence=RCA] [GO:0009611
            "response to wounding" evidence=RCA] [GO:0009738 "abscisic acid
            mediated signaling pathway" evidence=RCA] [GO:0009862 "systemic
            acquired resistance, salicylic acid mediated signaling pathway"
            evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
            pathway" evidence=RCA] [GO:0010363 "regulation of plant-type
            hypersensitive response" evidence=RCA] [GO:0016036 "cellular
            response to phosphate starvation" evidence=RCA] [GO:0019375
            "galactolipid biosynthetic process" evidence=RCA] [GO:0030968
            "endoplasmic reticulum unfolded protein response" evidence=RCA]
            [GO:0031348 "negative regulation of defense response" evidence=RCA]
            [GO:0043069 "negative regulation of programmed cell death"
            evidence=RCA] [GO:0050832 "defense response to fungus"
            evidence=RCA] InterPro:IPR004926 Pfam:PF03242 EMBL:CP002687
            GO:GO:0009409 GO:GO:0000302 GO:GO:0042631 EMBL:AY039589
            EMBL:AF410301 EMBL:AY052672 EMBL:AY054147 EMBL:AY086267
            EMBL:AY879295 IPI:IPI00541449 RefSeq:NP_567231.1 UniGene:At.24964
            STRING:Q93WF6 PRIDE:Q93WF6 EnsemblPlants:AT4G02380.1 GeneID:828053
            KEGG:ath:AT4G02380 TAIR:At4g02380 InParanoid:Q93WF6 OMA:ERVASSY
            PhylomeDB:Q93WF6 Genevestigator:Q93WF6 Uniprot:Q93WF6
        Length = 97

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query:     1 MASKFSNSFLLLRFCRRSNAVAA--GNV--GGKQPAAAEVMRKMTDMKAESVCGVEKEEF 56
             + S F +  L     RR  A  A  G+V  GG+  A A  + K   ++ ES   +     
Sbjct:    10 IVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVE-ESTQKIS---- 64

Query:    57 WMRDPNTGNWIPESQFNQIDAADLRDQLL 85
             W+ DP TG + PE+  N+IDAA+LR  LL
Sbjct:    65 WVPDPKTGYYRPETGSNEIDAAELRAALL 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.36    30
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  111 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.19u 0.17s 9.36t   Elapsed:  00:00:00
  Total cpu time:  9.19u 0.17s 9.36t   Elapsed:  00:00:00
  Start:  Thu May  9 17:17:01 2013   End:  Thu May  9 17:17:01 2013

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