Query 034497
Match_columns 93
No_of_seqs 99 out of 103
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03242 LEA_3: Late embryogen 100.0 1.1E-38 2.4E-43 216.9 3.8 83 1-86 1-93 (93)
2 PF02736 Myosin_N: Myosin N-te 86.6 0.23 4.9E-06 28.8 0.2 13 54-66 2-14 (42)
3 PF09996 DUF2237: Uncharacteri 70.1 2 4.3E-05 30.8 0.7 10 59-68 14-23 (117)
4 COG3651 Uncharacterized protei 68.7 1.8 3.9E-05 31.1 0.3 10 58-67 20-29 (125)
5 PF10948 DUF2635: Protein of u 58.9 5.4 0.00012 24.2 1.0 15 58-72 9-23 (47)
6 PF10500 SR-25: Nuclear RNA-sp 54.4 3.7 8E-05 32.3 -0.3 37 39-75 156-192 (225)
7 PRK09936 hypothetical protein; 49.9 8.4 0.00018 31.4 1.1 26 60-85 133-159 (296)
8 PF03195 DUF260: Protein of un 37.0 13 0.00028 25.4 0.3 18 53-70 64-81 (101)
9 PF13405 EF-hand_6: EF-hand do 31.3 30 0.00066 17.8 1.1 16 69-84 11-26 (31)
10 TIGR03054 photo_alph_chp1 puta 31.0 28 0.00061 25.2 1.2 26 57-82 108-133 (135)
11 TIGR02697 WPE_wolbac Wolbachia 29.1 25 0.00054 20.5 0.6 11 61-71 3-13 (36)
12 PF07846 Metallothio_Cad: Meta 28.1 28 0.00061 18.1 0.6 8 58-65 11-18 (21)
13 PF09803 DUF2346: Uncharacteri 28.1 16 0.00034 24.2 -0.4 31 57-87 34-64 (80)
14 PF12904 Collagen_bind_2: Puta 26.6 22 0.00048 24.0 0.1 18 53-71 49-66 (93)
15 COG3375 Uncharacterized conser 25.5 42 0.00092 27.1 1.5 13 58-70 178-190 (266)
16 cd02182 GH16_Strep_laminarinas 25.1 30 0.00064 26.2 0.5 28 54-81 109-137 (259)
17 PF11767 SET_assoc: Histone ly 24.8 25 0.00054 22.4 0.0 18 54-71 25-42 (66)
18 PF07886 BA14K: BA14K-like pro 23.8 46 0.001 18.5 1.0 12 60-71 14-25 (31)
19 PF13597 NRDD: Anaerobic ribon 23.7 37 0.0008 29.1 0.9 24 60-83 519-542 (546)
20 PRK13750 replication protein; 22.6 34 0.00074 27.8 0.4 18 52-71 131-148 (285)
21 PF14317 YcxB: YcxB-like prote 22.3 25 0.00055 19.7 -0.3 27 58-84 35-61 (62)
22 cd04711 BAH_Dnmt1_II BAH, or B 22.1 16 0.00035 26.7 -1.3 18 65-82 57-77 (137)
23 PHA00542 putative Cro-like pro 21.4 78 0.0017 20.2 1.9 26 61-88 6-31 (82)
24 PF10848 DUF2655: Protein of u 21.3 41 0.00088 22.5 0.5 14 58-71 14-27 (82)
25 KOG2165 Anaphase-promoting com 20.7 39 0.00085 30.9 0.5 8 56-63 419-426 (765)
26 COG4953 PbpC Membrane carboxyp 20.6 54 0.0012 29.9 1.3 25 62-86 365-390 (733)
27 COG3323 Uncharacterized protei 20.3 38 0.00082 24.0 0.2 21 52-73 35-55 (109)
28 PF08265 YL1_C: YL1 nuclear pr 20.3 48 0.001 18.3 0.6 8 58-65 12-19 (30)
No 1
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=100.00 E-value=1.1e-38 Score=216.88 Aligned_cols=83 Identities=36% Similarity=0.500 Sum_probs=61.4
Q ss_pred Ccccchh---------hhhhhhhhhhhhhHhhhcccCCCchHH-HHHHHhhhhhhhhccccccccccccCCCCccccCCC
Q 034497 1 MASKFSN---------SFLLLRFCRRSNAVAAGNVGGKQPAAA-EVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPES 70 (93)
Q Consensus 1 MArs~sn---------~~lsl~~~RRgYaaAA~~~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~WmpDP~TG~y~Pen 70 (93)
||||||| +.|+++++||||+++++. +.+++.. .+.++. +...+.++..++++|||||||||||||||
T Consensus 1 MArsls~ak~lsal~~~~~s~~~~rRgYaaaA~~--~~~sa~r~g~~~~~-~~~~~~~~~~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 1 MARSLSNAKVLSALVSDAFSSLISRRGYAAAAAA--VRSSAARGGAAGKA-KMASKAGEDSKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHhhcccccccccc-hhhhhcccccccccccccCCCCccccCCC
Confidence 9999999 567888899999999984 2221100 011111 11122233478899999999999999999
Q ss_pred CcCcCCHHHHHHhhCC
Q 034497 71 QFNQIDAADLRDQLLP 86 (93)
Q Consensus 71 ~~~e~D~aeLR~~lL~ 86 (93)
||+|||+||||++||+
T Consensus 78 ~~~EiD~AeLR~~lL~ 93 (93)
T PF03242_consen 78 HFGEIDAAELRAKLLK 93 (93)
T ss_pred CCCCCCHHHHHHHHhC
Confidence 9999999999999996
No 2
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=86.61 E-value=0.23 Score=28.78 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=10.6
Q ss_pred ccccccCCCCccc
Q 034497 54 EEFWMRDPNTGNW 66 (93)
Q Consensus 54 ~~~WmpDP~TG~y 66 (93)
+.-|+|||..||=
T Consensus 2 ~~vWvpD~~egfv 14 (42)
T PF02736_consen 2 KWVWVPDPKEGFV 14 (42)
T ss_dssp TEEEEEESSSSEE
T ss_pred CEEEEeCCcccEE
Confidence 3469999999984
No 3
>PF09996 DUF2237: Uncharacterized protein conserved in bacteria (DUF2237); InterPro: IPR018714 This family of hypothetical proteins has no known function.; PDB: 2LQ3_A 3USH_B.
Probab=70.06 E-value=2 Score=30.78 Aligned_cols=10 Identities=40% Similarity=0.564 Sum_probs=7.6
Q ss_pred cCCCCccccC
Q 034497 59 RDPNTGNWIP 68 (93)
Q Consensus 59 pDP~TG~y~P 68 (93)
-||.|||||=
T Consensus 14 ~~P~TGf~Rd 23 (117)
T PF09996_consen 14 TDPMTGFYRD 23 (117)
T ss_dssp TTTT-STTSS
T ss_pred CCCCcccccC
Confidence 4899999993
No 4
>COG3651 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.69 E-value=1.8 Score=31.10 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=8.8
Q ss_pred ccCCCCcccc
Q 034497 58 MRDPNTGNWI 67 (93)
Q Consensus 58 mpDP~TG~y~ 67 (93)
--||+||+||
T Consensus 20 ~~dPlTGFYR 29 (125)
T COG3651 20 CTDPLTGFYR 29 (125)
T ss_pred cCCcchhhhc
Confidence 3599999998
No 5
>PF10948 DUF2635: Protein of unknown function (DUF2635); InterPro: IPR024400 This family consists of uncharacterised proteins found in bacteria and bacteriophages. It includes protein Gp38 from Enterobacteria phage Mu.
Probab=58.89 E-value=5.4 Score=24.20 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=13.2
Q ss_pred ccCCCCccccCCCCc
Q 034497 58 MRDPNTGNWIPESQF 72 (93)
Q Consensus 58 mpDP~TG~y~Pen~~ 72 (93)
||||.||-+.|+...
T Consensus 9 VrdP~~g~~Lp~eG~ 23 (47)
T PF10948_consen 9 VRDPDTGQLLPAEGE 23 (47)
T ss_pred cCCCCCCCccCcccc
Confidence 899999999998863
No 6
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=54.44 E-value=3.7 Score=32.32 Aligned_cols=37 Identities=22% Similarity=0.096 Sum_probs=25.1
Q ss_pred HhhhhhhhhccccccccccccCCCCccccCCCCcCcC
Q 034497 39 KMTDMKAESVCGVEKEEFWMRDPNTGNWIPESQFNQI 75 (93)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~WmpDP~TG~y~Pen~~~e~ 75 (93)
.|.|...|+=.+-.--+-||=||.||-+|=....+||
T Consensus 156 am~PmTkEEyearQSvIRrVvDpETGRtRLIkGdGEi 192 (225)
T PF10500_consen 156 AMAPMTKEEYEARQSVIRRVVDPETGRTRLIKGDGEI 192 (225)
T ss_pred hcCCCCHHHHHHHHhhheeeecCCCCceeeecccchH
Confidence 3555555552112223559999999999999888886
No 7
>PRK09936 hypothetical protein; Provisional
Probab=49.90 E-value=8.4 Score=31.36 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=16.1
Q ss_pred CCCCccccCCCCcC-cCCHHHHHHhhC
Q 034497 60 DPNTGNWIPESQFN-QIDAADLRDQLL 85 (93)
Q Consensus 60 DP~TG~y~Pen~~~-e~D~aeLR~~lL 85 (93)
=|++|||+|..--. .-..++-|+.|+
T Consensus 133 ~~v~GWYiP~ElDd~~W~~~~rR~~L~ 159 (296)
T PRK09936 133 VPVDGWYLPAELDDLNWRDEARRQPLL 159 (296)
T ss_pred CCCCeEEeeeccchhcccCHHHHHHHH
Confidence 45799999964321 112266677776
No 8
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=36.99 E-value=13 Score=25.43 Aligned_cols=18 Identities=28% Similarity=0.095 Sum_probs=13.7
Q ss_pred cccccccCCCCccccCCC
Q 034497 53 KEEFWMRDPNTGNWIPES 70 (93)
Q Consensus 53 ~~~~WmpDP~TG~y~Pen 70 (93)
|-..|..||+.|.+--..
T Consensus 64 EA~~R~~dPv~Gc~G~i~ 81 (101)
T PF03195_consen 64 EANARARDPVYGCVGIIS 81 (101)
T ss_pred HHHhhccCCCcchHHHHH
Confidence 346699999999875444
No 9
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=31.35 E-value=30 Score=17.81 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=12.7
Q ss_pred CCCcCcCCHHHHHHhh
Q 034497 69 ESQFNQIDAADLRDQL 84 (93)
Q Consensus 69 en~~~e~D~aeLR~~l 84 (93)
.|+.+.||..||+..|
T Consensus 11 ~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 11 KDGDGFIDFEELRAIL 26 (31)
T ss_dssp TTSSSEEEHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHH
Confidence 3566889999999876
No 10
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=30.98 E-value=28 Score=25.23 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=21.8
Q ss_pred cccCCCCccccCCCCcCcCCHHHHHH
Q 034497 57 WMRDPNTGNWIPESQFNQIDAADLRD 82 (93)
Q Consensus 57 WmpDP~TG~y~Pen~~~e~D~aeLR~ 82 (93)
=+-||.||..+.-+.|+....+...+
T Consensus 108 tL~Dp~Tg~~i~L~aFG~dN~aaFa~ 133 (135)
T TIGR03054 108 TLTDPATGWSIELNAFGADNAAAFER 133 (135)
T ss_pred EEEcCCCCcEEEEeecCCchHHHHHh
Confidence 36799999999999999988776543
No 11
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=29.09 E-value=25 Score=20.55 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=9.7
Q ss_pred CCCccccCCCC
Q 034497 61 PNTGNWIPESQ 71 (93)
Q Consensus 61 P~TG~y~Pen~ 71 (93)
||-+||-|||-
T Consensus 3 PV~~hwDp~~l 13 (36)
T TIGR02697 3 PVPRHWDPENL 13 (36)
T ss_pred ccccccCcchh
Confidence 78899999986
No 12
>PF07846 Metallothio_Cad: Metallothionein family; InterPro: IPR012484 The sequence making up family 7 of the metallothionein superfamily are found repeated in metallothionein proteins expressed by two Tetrahymena species. Metallothioneins are low molecular mass, cysteine-rich metal-binding proteins that are thought to be involved in the regulation of levels of trace metals, and detoxification of these metals when present in excess []. Some of the metallothioneins found in this family (for example, Q8T6B3 from SWISSPROT) are known to be induced by cadmium and are thought to be involved in the cellular sequestration of toxic metal ions. The high proportion of cysteine residues allows the metal ions to be bound by the formation of clusters of metal-thiolate complexes []. Tetrahymena spp. metallothioneins differ from other eukaryotic metallothioneins mainly in the length of their sequences and in the cysteine-containing motifs they exhibit. ; GO: 0046870 cadmium ion binding
Probab=28.12 E-value=28 Score=18.15 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=6.3
Q ss_pred ccCCCCcc
Q 034497 58 MRDPNTGN 65 (93)
Q Consensus 58 mpDP~TG~ 65 (93)
--||.|||
T Consensus 11 C~DPnsG~ 18 (21)
T PF07846_consen 11 CTDPNSGC 18 (21)
T ss_pred ccCCCCcc
Confidence 35999997
No 13
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=28.05 E-value=16 Score=24.19 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=23.4
Q ss_pred cccCCCCccccCCCCcCcCCHHHHHHhhCCc
Q 034497 57 WMRDPNTGNWIPESQFNQIDAADLRDQLLPK 87 (93)
Q Consensus 57 WmpDP~TG~y~Pen~~~e~D~aeLR~~lL~~ 87 (93)
||.+-...+|.|++....-...++++.++.+
T Consensus 34 ~v~~~~~~~~ppe~~~~~~ele~~~~~~~~k 64 (80)
T PF09803_consen 34 WVIKRKRELYPPENEEIREELEEFKEELRKK 64 (80)
T ss_pred HhHHHhcccCCCCCcccHHHHHHHHHHHHHH
Confidence 8888888999999876555567777777644
No 14
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=26.63 E-value=22 Score=23.95 Aligned_cols=18 Identities=28% Similarity=0.763 Sum_probs=13.0
Q ss_pred cccccccCCCCccccCCCC
Q 034497 53 KEEFWMRDPNTGNWIPESQ 71 (93)
Q Consensus 53 ~~~~WmpDP~TG~y~Pen~ 71 (93)
.+..|+ ||.||-|.+...
T Consensus 49 ~~a~Wf-dPR~G~~~~~g~ 66 (93)
T PF12904_consen 49 VKAWWF-DPRTGKYTYIGE 66 (93)
T ss_dssp EEEEEE-ETTT-BEEEEEE
T ss_pred eeEEEE-cCCCCCEEEeee
Confidence 467787 999999988643
No 15
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=25.46 E-value=42 Score=27.05 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=11.0
Q ss_pred ccCCCCccccCCC
Q 034497 58 MRDPNTGNWIPES 70 (93)
Q Consensus 58 mpDP~TG~y~Pen 70 (93)
.++++||||||..
T Consensus 178 in~~~~g~~rp~~ 190 (266)
T COG3375 178 INPGGTGYLRPVE 190 (266)
T ss_pred cCCCCcccccccc
Confidence 3469999999988
No 16
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=25.07 E-value=30 Score=26.17 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=16.2
Q ss_pred ccccc-cCCCCccccCCCCcCcCCHHHHH
Q 034497 54 EEFWM-RDPNTGNWIPESQFNQIDAADLR 81 (93)
Q Consensus 54 ~~~Wm-pDP~TG~y~Pen~~~e~D~aeLR 81 (93)
-.||| |++.++.|-+=-..+|||+.|-.
T Consensus 109 PAfWll~~~~~~~~~~WP~~GEIDImE~~ 137 (259)
T cd02182 109 PAFWMLGDSYRGNGTNWPACGELDIMENV 137 (259)
T ss_pred eeeeccCCCccCCCCCCCccceeeeeecc
Confidence 36786 55544222222235899999865
No 17
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=24.76 E-value=25 Score=22.41 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=14.0
Q ss_pred ccccccCCCCccccCCCC
Q 034497 54 EEFWMRDPNTGNWIPESQ 71 (93)
Q Consensus 54 ~~~WmpDP~TG~y~Pen~ 71 (93)
.-.|+.+-.||||+==|-
T Consensus 25 ~~~~I~~d~tGfYIvF~~ 42 (66)
T PF11767_consen 25 RWDRIRDDRTGFYIVFND 42 (66)
T ss_pred CcceEEecCCEEEEEECC
Confidence 345899999999996553
No 18
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=23.84 E-value=46 Score=18.53 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.4
Q ss_pred CCCCccccCCCC
Q 034497 60 DPNTGNWIPESQ 71 (93)
Q Consensus 60 DP~TG~y~Pen~ 71 (93)
||.||.|+|-+.
T Consensus 14 ~p~~~Ty~~~~G 25 (31)
T PF07886_consen 14 DPRDNTYQPYDG 25 (31)
T ss_pred CCCCCcEeCCCC
Confidence 899999999764
No 19
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=23.73 E-value=37 Score=29.08 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=8.1
Q ss_pred CCCCccccCCCCcCcCCHHHHHHh
Q 034497 60 DPNTGNWIPESQFNQIDAADLRDQ 83 (93)
Q Consensus 60 DP~TG~y~Pen~~~e~D~aeLR~~ 83 (93)
.-+||||+|.+++++-=-+|++.+
T Consensus 519 ~Rv~GYl~~v~~~n~gK~~E~~~R 542 (546)
T PF13597_consen 519 SRVTGYLRPVSRWNKGKQAEFKDR 542 (546)
T ss_dssp B-SSSS-BTTS-------------
T ss_pred EEeeccccCccccCHHHHHHHHHh
Confidence 458999999998888777777654
No 20
>PRK13750 replication protein; Provisional
Probab=22.61 E-value=34 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=14.3
Q ss_pred ccccccccCCCCccccCCCC
Q 034497 52 EKEEFWMRDPNTGNWIPESQ 71 (93)
Q Consensus 52 ~~~~~WmpDP~TG~y~Pen~ 71 (93)
.-+..| |+.+|+|+|-..
T Consensus 131 ~cek~w--D~~~g~yiPk~I 148 (285)
T PRK13750 131 TYQTEY--DPLIGCYIPTDI 148 (285)
T ss_pred eeeeec--cchhhcccCcce
Confidence 345668 999999999764
No 21
>PF14317 YcxB: YcxB-like protein
Probab=22.31 E-value=25 Score=19.73 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.8
Q ss_pred ccCCCCccccCCCCcCcCCHHHHHHhh
Q 034497 58 MRDPNTGNWIPESQFNQIDAADLRDQL 84 (93)
Q Consensus 58 mpDP~TG~y~Pen~~~e~D~aeLR~~l 84 (93)
.-++..++.+|-..+.+-|..++++.|
T Consensus 35 ~~~~~~~~~iPk~~f~~~e~~~f~~~l 61 (62)
T PF14317_consen 35 YLGKNQAFIIPKRAFSEEEKEEFREFL 61 (62)
T ss_pred EECCCeEEEEEHHHCCHhHHHHHHHHh
Confidence 358889999999998877888887654
No 22
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=22.10 E-value=16 Score=26.70 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=12.2
Q ss_pred cccCCCCcCcCCH---HHHHH
Q 034497 65 NWIPESQFNQIDA---ADLRD 82 (93)
Q Consensus 65 ~y~Pen~~~e~D~---aeLR~ 82 (93)
||||||..+-... +|+|+
T Consensus 57 fYRPEdi~~g~~~ayhsDire 77 (137)
T cd04711 57 FYRPENTHKGFKATYHADINM 77 (137)
T ss_pred Eecccccccccccccccceee
Confidence 8999998775433 44443
No 23
>PHA00542 putative Cro-like protein
Probab=21.36 E-value=78 Score=20.17 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=17.4
Q ss_pred CCCccccCCCCcCcCCHHHHHHhhCCcc
Q 034497 61 PNTGNWIPESQFNQIDAADLRDQLLPKI 88 (93)
Q Consensus 61 P~TG~y~Pen~~~e~D~aeLR~~lL~~~ 88 (93)
|.+|.|||.-+.. ++.++...+..++
T Consensus 6 ~~~~~~Rp~~~~~--~~~~l~~~l~~~g 31 (82)
T PHA00542 6 PATTPTIPAAYTQ--RPDELVCALIRAG 31 (82)
T ss_pred cccCCcCCcccCc--CHHHHHHHHHHCC
Confidence 5689999997755 3556666655443
No 24
>PF10848 DUF2655: Protein of unknown function (DUF2655); InterPro: IPR020371 This entry contains proteins with no known function.
Probab=21.29 E-value=41 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=10.3
Q ss_pred ccCCCCccccCCCC
Q 034497 58 MRDPNTGNWIPESQ 71 (93)
Q Consensus 58 mpDP~TG~y~Pen~ 71 (93)
..--.||||-||-.
T Consensus 14 ls~kq~g~yspe~~ 27 (82)
T PF10848_consen 14 LSKKQPGHYSPEIF 27 (82)
T ss_pred hcccCCCCcCcccc
Confidence 33456999999864
No 25
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=20.70 E-value=39 Score=30.89 Aligned_cols=8 Identities=50% Similarity=0.999 Sum_probs=6.6
Q ss_pred ccccCCCC
Q 034497 56 FWMRDPNT 63 (93)
Q Consensus 56 ~WmpDP~T 63 (93)
-|||||+-
T Consensus 419 ~W~PdPiD 426 (765)
T KOG2165|consen 419 NWMPDPID 426 (765)
T ss_pred hccCCCcc
Confidence 59999964
No 26
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=20.63 E-value=54 Score=29.92 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=19.5
Q ss_pred CCccccCCCCcCc-CCHHHHHHhhCC
Q 034497 62 NTGNWIPESQFNQ-IDAADLRDQLLP 86 (93)
Q Consensus 62 ~TG~y~Pen~~~e-~D~aeLR~~lL~ 86 (93)
.+|+|+|+|...- ..+.-.|+.|++
T Consensus 365 ~fg~YrP~Nfd~~F~G~VsvreAL~~ 390 (733)
T COG4953 365 RFGDYRPENFDSNFHGPVSVREALIK 390 (733)
T ss_pred cccCcCCccccccccCcchHHHHHHH
Confidence 4699999998554 578888888874
No 27
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.34 E-value=38 Score=24.02 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=14.7
Q ss_pred ccccccccCCCCccccCCCCcC
Q 034497 52 EKEEFWMRDPNTGNWIPESQFN 73 (93)
Q Consensus 52 ~~~~~WmpDP~TG~y~Pen~~~ 73 (93)
...-+|- --.||+|+|...++
T Consensus 35 Y~~C~~~-~~g~G~frP~egAn 55 (109)
T COG3323 35 YDHCTFS-SEGTGQFRPLEGAN 55 (109)
T ss_pred cceEEEE-eeeeEEEeecCCCC
Confidence 4445564 35899999988764
No 28
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=20.25 E-value=48 Score=18.26 Aligned_cols=8 Identities=63% Similarity=0.987 Sum_probs=6.2
Q ss_pred ccCCCCcc
Q 034497 58 MRDPNTGN 65 (93)
Q Consensus 58 mpDP~TG~ 65 (93)
-.||+||-
T Consensus 12 Y~DP~T~l 19 (30)
T PF08265_consen 12 YRDPKTGL 19 (30)
T ss_pred ccCCCCCC
Confidence 36999985
Done!