Query 034497
Match_columns 93
No_of_seqs 99 out of 103
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 05:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f5h_A Type I polyketide synth 68.0 2.1 7E-05 27.0 1.3 20 68-87 9-28 (68)
2 2lq3_A Uncharacterized protein 62.9 2.2 7.6E-05 30.1 0.8 9 60-68 18-26 (130)
3 3ush_A Uncharacterized protein 61.4 2.2 7.6E-05 30.0 0.6 10 59-68 15-24 (129)
4 1sr8_A Cobalamin biosynthesis 54.0 6.5 0.00022 30.8 2.2 16 60-75 4-19 (298)
5 2jwo_A RAG-2, V(D)J recombinat 42.2 7.9 0.00027 25.3 0.8 10 60-69 5-14 (82)
6 1ik9_C DNA ligase IV; DNA END 20.9 57 0.0019 17.7 1.9 13 72-84 19-31 (37)
7 2nac_A NAD-dependent formate d 19.7 31 0.001 27.1 0.8 9 57-65 7-15 (393)
8 1daq_A Endoglucanase SS, CELS; 18.6 93 0.0032 18.5 2.7 29 58-86 1-29 (71)
9 2l4w_A Uncharacterized protein 15.8 53 0.0018 22.6 1.1 12 63-74 12-23 (120)
10 4fc5_A TON_0340, putative unch 14.8 47 0.0016 25.3 0.7 23 62-84 47-73 (270)
No 1
>3f5h_A Type I polyketide synthase PIKAIII, type I polyketide synthase pikaiv fusion protein...; docking domain, pikromycin, H2-T2; 1.75A {Streptomyces venezuelae}
Probab=68.05 E-value=2.1 Score=26.98 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=15.5
Q ss_pred CCCCcCcCCHHHHHHhhCCc
Q 034497 68 PESQFNQIDAADLRDQLLPK 87 (93)
Q Consensus 68 Pen~~~e~D~aeLR~~lL~~ 87 (93)
||..|..+|+.+||.++|.-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (68)
T 3f5h_A 9 PEASIDDLDAEALIRMALGP 28 (68)
T ss_dssp ---CGGGCCHHHHHHHHHCH
T ss_pred CccccccccHHHHHHHhcCC
Confidence 88899999999999999953
No 2
>2lq3_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI:biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=62.89 E-value=2.2 Score=30.06 Aligned_cols=9 Identities=33% Similarity=0.424 Sum_probs=7.9
Q ss_pred CCCCccccC
Q 034497 60 DPNTGNWIP 68 (93)
Q Consensus 60 DP~TG~y~P 68 (93)
||.|||||=
T Consensus 18 ~P~TGf~Rd 26 (130)
T 2lq3_A 18 APMTGWYRN 26 (130)
T ss_dssp SSSCCCSSS
T ss_pred CCCcccCcC
Confidence 799999983
No 3
>3ush_A Uncharacterized protein; DUF2237, PF09996, PSI-biology, NESG, structural genomics, no structural genomics consortium, unknown function; 1.69A {Salinibacter ruber}
Probab=61.44 E-value=2.2 Score=30.02 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=8.4
Q ss_pred cCCCCccccC
Q 034497 59 RDPNTGNWIP 68 (93)
Q Consensus 59 pDP~TG~y~P 68 (93)
-||.|||||=
T Consensus 15 ~~P~TGf~Rd 24 (129)
T 3ush_A 15 MDPETGFYRD 24 (129)
T ss_dssp BTTBCSTTSS
T ss_pred CCCCCccccC
Confidence 3899999984
No 4
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI, protein structure initiative, center for structural genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP: e.54.1.1
Probab=54.03 E-value=6.5 Score=30.80 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=14.7
Q ss_pred CCCCccccCCCCcCcC
Q 034497 60 DPNTGNWIPESQFNQI 75 (93)
Q Consensus 60 DP~TG~y~Pen~~~e~ 75 (93)
||+|||=.||.....-
T Consensus 4 dpv~~~~~p~~w~~~~ 19 (298)
T 1sr8_A 4 DPIELYRYPEKWIKDR 19 (298)
T ss_dssp CTTTCCBCCGGGCCCS
T ss_pred CCccCCcCcHHHHHHH
Confidence 9999999999998766
No 5
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=42.22 E-value=7.9 Score=25.31 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.2
Q ss_pred CCCCccccCC
Q 034497 60 DPNTGNWIPE 69 (93)
Q Consensus 60 DP~TG~y~Pe 69 (93)
.|.|||||-=
T Consensus 5 ~~etGYWI~C 14 (82)
T 2jwo_A 5 SPEFGYWITC 14 (82)
T ss_dssp SSSCSSCSCS
T ss_pred CCcCceEEEe
Confidence 5889999865
No 6
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.93 E-value=57 Score=17.70 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.5
Q ss_pred cCcCCHHHHHHhh
Q 034497 72 FNQIDAADLRDQL 84 (93)
Q Consensus 72 ~~e~D~aeLR~~l 84 (93)
+.+||+.|||.-|
T Consensus 19 ~rd~t~~eLk~il 31 (37)
T 1ik9_C 19 FIDTDLNQLKEVF 31 (37)
T ss_dssp SSCCCHHHHHHHH
T ss_pred cCcCCHHHHHHHH
Confidence 4678999999866
No 7
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A
Probab=19.74 E-value=31 Score=27.12 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=7.1
Q ss_pred cccCCCCcc
Q 034497 57 WMRDPNTGN 65 (93)
Q Consensus 57 WmpDP~TG~ 65 (93)
--|||+|||
T Consensus 7 ~~~~~~~~~ 15 (393)
T 2nac_A 7 LYDDPVDGY 15 (393)
T ss_dssp CBCCCTTCS
T ss_pred ecCCCCCCC
Confidence 358999998
No 8
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome, calcium-binding, hydrolase; NMR {Clostridium thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Probab=18.57 E-value=93 Score=18.51 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=16.2
Q ss_pred ccCCCCccccCCCCcCcCCHHHHHHhhCC
Q 034497 58 MRDPNTGNWIPESQFNQIDAADLRDQLLP 86 (93)
Q Consensus 58 mpDP~TG~y~Pen~~~e~D~aeLR~~lL~ 86 (93)
||..+.|..--......+|.+-||.-||.
T Consensus 1 ~~~~~~GDvN~Dg~vn~~D~~~l~~yllg 29 (71)
T 1daq_A 1 MSTKLYGDVNDDGKVNSTDAVALKRYVLR 29 (71)
T ss_dssp CCCCCSSCSSSSSCSSGGGHHHHHHHHHC
T ss_pred CCCCcccCCCCCCcCCHHHHHHHHHHHcC
Confidence 34455555555555555666666665553
No 9
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=15.79 E-value=53 Score=22.65 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=10.4
Q ss_pred CccccCCCCcCc
Q 034497 63 TGNWIPESQFNQ 74 (93)
Q Consensus 63 TG~y~Pen~~~e 74 (93)
-|.|.|-|+|.+
T Consensus 12 ~~~WkpvN~f~~ 23 (120)
T 2l4w_A 12 GGRWKHVNHFDE 23 (120)
T ss_dssp SSTTTCCCCCSS
T ss_pred CCCccccccccc
Confidence 588999999976
No 10
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=14.79 E-value=47 Score=25.31 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=16.7
Q ss_pred CCccccCCCCcCcCC----HHHHHHhh
Q 034497 62 NTGNWIPESQFNQID----AADLRDQL 84 (93)
Q Consensus 62 ~TG~y~Pen~~~e~D----~aeLR~~l 84 (93)
+||+|.|.....|+| ++.|=..|
T Consensus 47 ~TGFpv~~~~~~ETDGP~GA~ala~aL 73 (270)
T 4fc5_A 47 VTGFPIPPMMVAETDGPPGALAIYRAV 73 (270)
T ss_dssp EECCCBTTTTBCBSSSHHHHHHHHHHH
T ss_pred EeCcccCCCCCcccCCcHHHHHHHHHH
Confidence 699999877778988 45554444
Done!