BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034498
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LFL4|CLE25_ARATH CLAVATA3/ESR (CLE)-related protein 25 OS=Arabidopsis thaliana
          GN=CLE25 PE=2 SV=1
          Length = 81

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 57/90 (63%), Gaps = 11/90 (12%)

Query: 1  MGGCVLRFLIGAVIFLGVIWLLFAGILANHATKTTVTVPPTEISKHWKLIAREKHHAHQD 60
          MGG  +R L+G +  LG+I  L  GILAN A     +VP +E  K  +        + +D
Sbjct: 1  MGGNGIRALVGVIASLGLIVFLLVGILANSAP----SVPSSENVKTLRF-------SGKD 49

Query: 61 MDLNYVSKRRVPNGPDPIHNRRASKSRQPP 90
          ++L +VSKR+VPNGPDPIHNR+A  SR+PP
Sbjct: 50 VNLFHVSKRKVPNGPDPIHNRKAETSRRPP 79


>sp|O04547|CLE26_ARATH CLAVATA3/ESR (CLE)-related protein 26 OS=Arabidopsis thaliana
          GN=CLE26 PE=2 SV=1
          Length = 118

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 8  FLIGAVIFLGVIWLLFAGILANHATKTTVTVPPTEISKHWKLIAREKHHAHQDMDLNYV- 66
          F +G V  L +   +      +  TK   T      S   K I +E     ++ DL+YV 
Sbjct: 17 FTVGVVTLLMIDAFVLQNNKEDDKTKEITTAVNMNNSDA-KEIQQELEDGSRNDDLSYVA 75

Query: 67 SKRRVPNGPDPIHNRRASKSR 87
          SKR+VP GPDPIHNR    SR
Sbjct: 76 SKRKVPRGPDPIHNRFLLLSR 96


>sp|Q86RQ1|CLE2_HETGL CLAVATA3/ESR (CLE)-related protein 2 OS=Heterodera glycines GN=CLE2
           PE=1 SV=1
          Length = 138

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 24  AGILANHATKTTVTVPPTEISKHWKLIAREKHHAH-----QDMDLNYVSKRRVPNGPDPI 78
           AG++ +H T  ++  PP  +         EK  AH     + M +N  SKR  P+GPDP 
Sbjct: 78  AGLVPSHVTNRSMAPPPPPVQFEMGANRLEKMRAHLRELAEKMPVNE-SKRLSPSGPDPH 136

Query: 79  H 79
           H
Sbjct: 137 H 137


>sp|Q3ECJ5|CLE14_ARATH CLAVATA3/ESR (CLE)-related protein 2 OS=Arabidopsis thaliana
          GN=CLE14 PE=2 SV=1
          Length = 80

 Score = 30.4 bits (67), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 15 FLGVIWLLFAGILANHATKTTVTVPPTE----ISKHWKLIAREKHHAHQDMDLNY-VSKR 69
          FL V+  + AG+ ++ A +   ++  TE    +S   K I  E   A +  D  Y  S R
Sbjct: 10 FLIVMIFILAGLHSSSAGRKLPSMTTTEEFQRLSFDGKRILSEVT-ADKKYDRIYGASAR 68

Query: 70 RVPNGPDPIHNR 81
           VP GP+P+HN+
Sbjct: 69 LVPKGPNPLHNK 80


>sp|Q8W261|CLE19_ARATH CLAVATA3/ESR (CLE)-related protein 19 OS=Arabidopsis thaliana
          GN=CLE19 PE=2 SV=1
          Length = 74

 Score = 29.6 bits (65), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 67 SKRRVPNGPDPIHNR 81
          SKR +P GP+P+HNR
Sbjct: 60 SKRVIPTGPNPLHNR 74


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,289,699
Number of Sequences: 539616
Number of extensions: 1376581
Number of successful extensions: 4020
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4008
Number of HSP's gapped (non-prelim): 17
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)