Query 034498
Match_columns 93
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 03:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07172 GRP: Glycine rich pro 76.2 2.8 6.1E-05 28.6 2.6 12 19-30 14-25 (95)
2 PF10669 Phage_Gp23: Protein g 69.2 7.6 0.00016 28.2 3.5 22 6-27 15-36 (121)
3 PF06387 Calcyon: D1 dopamine 64.4 7.4 0.00016 30.3 2.9 19 7-25 86-104 (186)
4 PF06643 DUF1158: Protein of u 47.9 16 0.00035 25.1 2.0 15 15-29 53-67 (82)
5 KOG3164 Uncharacterized protei 43.7 12 0.00026 30.1 1.0 16 64-79 191-206 (236)
6 PF11511 RhodobacterPufX: Intr 43.0 44 0.00094 22.2 3.5 23 4-26 24-46 (67)
7 PTZ00234 variable surface prot 36.9 36 0.00078 29.0 2.9 24 1-24 359-382 (433)
8 PF05510 Sarcoglycan_2: Sarcog 36.0 2.3E+02 0.0049 24.1 7.5 14 72-85 363-376 (386)
9 KOG4410 5-formyltetrahydrofola 35.9 15 0.00033 31.1 0.6 18 65-82 44-61 (396)
10 PF06103 DUF948: Bacterial pro 34.9 55 0.0012 20.9 3.0 20 7-26 2-21 (90)
11 PF15176 LRR19-TM: Leucine-ric 33.7 56 0.0012 23.3 3.1 25 2-26 13-37 (102)
12 PRK13618 psbV cytochrome c-550 32.5 73 0.0016 23.8 3.7 25 4-28 1-25 (163)
13 PRK13254 cytochrome c-type bio 31.1 80 0.0017 23.1 3.6 26 6-31 9-34 (148)
14 PF06637 PV-1: PV-1 protein (P 30.7 53 0.0011 28.6 3.0 25 6-30 31-55 (442)
15 TIGR03044 PS_II_psb27 photosys 29.6 83 0.0018 23.3 3.5 21 7-27 6-26 (135)
16 PRK00442 tatA twin arginine tr 28.7 54 0.0012 22.8 2.3 13 14-26 10-22 (92)
17 PRK02251 putative septation in 28.5 76 0.0017 21.8 3.0 22 5-26 33-54 (87)
18 PRK11633 cell division protein 28.3 19 0.00041 28.1 -0.1 28 1-28 1-28 (226)
19 PF09680 Tiny_TM_bacill: Prote 28.2 57 0.0012 17.9 1.9 14 13-26 8-21 (24)
20 PHA03255 BDLF3; Provisional 27.6 63 0.0014 25.7 2.7 18 12-29 186-203 (234)
21 PRK02958 tatA twin arginine tr 27.4 47 0.001 22.1 1.7 14 13-26 9-22 (73)
22 PRK00159 putative septation in 25.9 91 0.002 21.5 3.0 22 5-26 32-53 (87)
23 COG2332 CcmE Cytochrome c-type 25.8 1E+02 0.0022 23.4 3.4 26 6-31 9-34 (153)
24 PRK04598 tatA twin arginine tr 25.2 54 0.0012 22.2 1.7 14 13-26 9-22 (81)
25 CHL00133 psbV photosystem II c 25.2 85 0.0018 23.5 2.9 26 4-29 1-26 (163)
26 TIGR01732 tiny_TM_bacill conse 23.6 81 0.0018 17.6 1.9 14 13-26 10-23 (26)
27 PF06781 UPF0233: Uncharacteri 23.1 1E+02 0.0023 21.0 2.8 25 5-29 32-56 (87)
28 PRK03554 tatA twin arginine tr 23.1 62 0.0013 22.5 1.7 14 13-26 9-22 (89)
29 PRK04561 tatA twin arginine tr 22.3 65 0.0014 21.7 1.7 14 13-26 9-22 (75)
30 PRK14859 tatA twin arginine tr 22.2 68 0.0015 20.6 1.7 15 12-26 8-22 (63)
31 PRK01833 tatA twin arginine tr 21.1 73 0.0016 21.2 1.7 14 13-26 9-22 (74)
32 PRK14756 hypothetical protein; 21.0 1.3E+02 0.0029 17.1 2.5 20 1-20 1-20 (29)
33 PRK00720 tatA twin arginine tr 20.8 74 0.0016 21.5 1.7 14 13-26 9-22 (78)
34 PRK01614 tatE twin arginine tr 20.6 74 0.0016 22.0 1.7 14 13-26 9-22 (85)
35 PRK03625 tatE twin arginine tr 20.5 70 0.0015 20.9 1.5 14 13-26 9-22 (67)
36 PRK01470 tatA twin arginine tr 20.4 71 0.0015 19.8 1.4 14 13-26 8-21 (51)
37 PRK13150 cytochrome c-type bio 20.3 1.6E+02 0.0036 22.0 3.6 24 8-31 11-34 (159)
38 PF02416 MttA_Hcf106: mttA/Hcf 20.1 78 0.0017 19.3 1.6 14 13-26 6-19 (53)
No 1
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.20 E-value=2.8 Score=28.62 Aligned_cols=12 Identities=17% Similarity=-0.009 Sum_probs=6.6
Q ss_pred HHHHHHHhhhcc
Q 034498 19 IWLLFAGILANH 30 (93)
Q Consensus 19 V~lL~~g~l~~~ 30 (93)
++||+|++-+++
T Consensus 14 A~lLlisSevaa 25 (95)
T PF07172_consen 14 AALLLISSEVAA 25 (95)
T ss_pred HHHHHHHhhhhh
Confidence 455666655444
No 2
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=69.18 E-value=7.6 Score=28.19 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 034498 6 LRFLIGAVIFLGVIWLLFAGIL 27 (93)
Q Consensus 6 ~~~l~~av~~vg~V~lL~~g~l 27 (93)
+-.||++++++.|++||.+++-
T Consensus 15 K~~~FA~L~i~~FiILLIi~~~ 36 (121)
T PF10669_consen 15 KIMFFAFLFIVVFIILLIITKS 36 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888899999999998873
No 3
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=64.38 E-value=7.4 Score=30.27 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034498 7 RFLIGAVIFLGVIWLLFAG 25 (93)
Q Consensus 7 ~~l~~av~~vg~V~lL~~g 25 (93)
+.+.-+++|+|||+||++=
T Consensus 86 ~lI~~alAfl~Cv~~Lv~Y 104 (186)
T PF06387_consen 86 RLIAFALAFLGCVVFLVMY 104 (186)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5667789999999888863
No 4
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=47.92 E-value=16 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhc
Q 034498 15 FLGVIWLLFAGILAN 29 (93)
Q Consensus 15 ~vg~V~lL~~g~l~~ 29 (93)
.+-|+|||+.|+++-
T Consensus 53 l~FClWFLlLGaiEy 67 (82)
T PF06643_consen 53 LVFCLWFLLLGAIEY 67 (82)
T ss_pred HHHHHHHHHHhHHHH
Confidence 355899999999763
No 5
>KOG3164 consensus Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=43.71 E-value=12 Score=30.07 Aligned_cols=16 Identities=44% Similarity=0.879 Sum_probs=13.0
Q ss_pred cccccccCCCCCCccc
Q 034498 64 NYVSKRRVPNGPDPIH 79 (93)
Q Consensus 64 ~~~SkRrVP~GPdPiH 79 (93)
+..-||++|.|||||-
T Consensus 191 ~~~kk~k~~k~pNpLs 206 (236)
T KOG3164|consen 191 NKEKKRKGPKGPNPLS 206 (236)
T ss_pred hhhhcCCCCCCCCCcc
Confidence 3456899999999984
No 6
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=43.01 E-value=44 Score=22.22 Aligned_cols=23 Identities=35% Similarity=0.353 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 034498 4 CVLRFLIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 4 ~~~~~l~~av~~vg~V~lL~~g~ 26 (93)
|.+-+.+++++|++.++++++..
T Consensus 24 MlkGag~Aav~~~~~~~~l~~~~ 46 (67)
T PF11511_consen 24 MLKGAGYAAVFFLGLWFLLVALY 46 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHH
Confidence 55666777888877766665433
No 7
>PTZ00234 variable surface protein Vir12; Provisional
Probab=36.94 E-value=36 Score=28.96 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHH
Q 034498 1 MGGCVLRFLIGAVIFLGVIWLLFA 24 (93)
Q Consensus 1 mg~~~~~~l~~av~~vg~V~lL~~ 24 (93)
|.+.++|=++-|++++|.|.||+-
T Consensus 359 ~dSn~~rniim~~ailGtifFlfy 382 (433)
T PTZ00234 359 LKSEYFRHSIVGASIIGVLVFLFF 382 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Confidence 567888999999999999999984
No 8
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=35.98 E-value=2.3e+02 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=6.1
Q ss_pred CCCCCcccccccCC
Q 034498 72 PNGPDPIHNRRASK 85 (93)
Q Consensus 72 P~GPdPiHNr~~~~ 85 (93)
.+=+.|+||.+.++
T Consensus 363 g~r~~p~~~~~~d~ 376 (386)
T PF05510_consen 363 GERPPPPPNFRYDN 376 (386)
T ss_pred cCcCCCCCCCCccc
Confidence 33344444444443
No 9
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=35.91 E-value=15 Score=31.11 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=16.3
Q ss_pred ccccccCCCCCCcccccc
Q 034498 65 YVSKRRVPNGPDPIHNRR 82 (93)
Q Consensus 65 ~~SkRrVP~GPdPiHNr~ 82 (93)
||..+.+--||+|+|||-
T Consensus 44 ~me~~n~a~~prpvhhRI 61 (396)
T KOG4410|consen 44 KMEEGNVAIGPRPVHHRI 61 (396)
T ss_pred HHhhcccccCCcchhhcC
Confidence 688899999999999985
No 10
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.90 E-value=55 Score=20.91 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 034498 7 RFLIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 7 ~~l~~av~~vg~V~lL~~g~ 26 (93)
..++.|++|+.++++|+.-.
T Consensus 2 a~lI~Aiaf~vLvi~l~~~l 21 (90)
T PF06103_consen 2 AGLIAAIAFAVLVIFLIKVL 21 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887777544
No 11
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=33.73 E-value=56 Score=23.28 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=16.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHh
Q 034498 2 GGCVLRFLIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 2 g~~~~~~l~~av~~vg~V~lL~~g~ 26 (93)
|+.+.++|.+.|+++.++.||++-+
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHH
Confidence 4566788888777777766665443
No 12
>PRK13618 psbV cytochrome c-550; Provisional
Probab=32.53 E-value=73 Score=23.84 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 034498 4 CVLRFLIGAVIFLGVIWLLFAGILA 28 (93)
Q Consensus 4 ~~~~~l~~av~~vg~V~lL~~g~l~ 28 (93)
|.++++..+++++-++|-+.++...
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~~~~a~ 25 (163)
T PRK13618 1 MFRRLIGVVVATVLLTFQLFVGSAT 25 (163)
T ss_pred ChHHHHHHHHHHHHHHHHHHccHHH
Confidence 4667877777777666555545433
No 13
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.05 E-value=80 Score=23.06 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Q 034498 6 LRFLIGAVIFLGVIWLLFAGILANHA 31 (93)
Q Consensus 6 ~~~l~~av~~vg~V~lL~~g~l~~~~ 31 (93)
+..+..++++++++..|++.+|.++.
T Consensus 9 l~~~~~~~~~~~~~~~L~~~a~~~~~ 34 (148)
T PRK13254 9 LLIILGALAALGLAVALVLYALRQNI 34 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35566777778888888888877764
No 14
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.70 E-value=53 Score=28.58 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 034498 6 LRFLIGAVIFLGVIWLLFAGILANH 30 (93)
Q Consensus 6 ~~~l~~av~~vg~V~lL~~g~l~~~ 30 (93)
|-+|+--++.+|+|+||+-|--..+
T Consensus 31 F~SLIQ~LIIlgLVLFmVYGn~h~~ 55 (442)
T PF06637_consen 31 FVSLIQFLIILGLVLFMVYGNVHVS 55 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcchh
Confidence 4667777889999999998765443
No 15
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=29.62 E-value=83 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034498 7 RFLIGAVIFLGVIWLLFAGIL 27 (93)
Q Consensus 7 ~~l~~av~~vg~V~lL~~g~l 27 (93)
+.+..+++++.+++|++.+..
T Consensus 6 rl~~~~lal~L~~~l~l~~c~ 26 (135)
T TIGR03044 6 RLSRAALALVLGLCLLLTACS 26 (135)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 444556677777777776543
No 16
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=28.68 E-value=54 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHh
Q 034498 14 IFLGVIWLLFAGI 26 (93)
Q Consensus 14 ~~vg~V~lL~~g~ 26 (93)
+++.+|.||++|.
T Consensus 10 liIlvIvlllFG~ 22 (92)
T PRK00442 10 IVILVVVVLVFGT 22 (92)
T ss_pred HHHHHHHHHHhCc
Confidence 4666777888876
No 17
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=28.52 E-value=76 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.529 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 034498 5 VLRFLIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 5 ~~~~l~~av~~vg~V~lL~~g~ 26 (93)
-+..++-+++++|++|+++.=.
T Consensus 33 W~~~~m~~lm~~Gl~WlvvyYl 54 (87)
T PRK02251 33 WFVPLFVALMIIGLIWLVVYYL 54 (87)
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788888999999887544
No 18
>PRK11633 cell division protein DedD; Provisional
Probab=28.33 E-value=19 Score=28.10 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhh
Q 034498 1 MGGCVLRFLIGAVIFLGVIWLLFAGILA 28 (93)
Q Consensus 1 mg~~~~~~l~~av~~vg~V~lL~~g~l~ 28 (93)
|.+.+..-|.|+|++|.+.+..|=+.|-
T Consensus 1 Mas~fqnRLVGtiVLVALgVIfLP~llD 28 (226)
T PRK11633 1 MASKFQNRLVGTIVLVALGVIVLPGLLD 28 (226)
T ss_pred CchHhhhhhhhhhhhheehheecccccc
Confidence 6677778899999999885554444443
No 19
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=28.20 E-value=57 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
+++|.+|+|..+|+
T Consensus 8 livVLFILLiIvG~ 21 (24)
T PF09680_consen 8 LIVVLFILLIIVGA 21 (24)
T ss_pred hHHHHHHHHHHhcc
Confidence 34566666666654
No 20
>PHA03255 BDLF3; Provisional
Probab=27.60 E-value=63 Score=25.67 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 034498 12 AVIFLGVIWLLFAGILAN 29 (93)
Q Consensus 12 av~~vg~V~lL~~g~l~~ 29 (93)
.++|||+-.|+++.+++.
T Consensus 186 tlvfvgltflmlilifaa 203 (234)
T PHA03255 186 TLVFVGLTFLMLILIFAA 203 (234)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566666655555555443
No 21
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=27.41 E-value=47 Score=22.09 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|+||++|.
T Consensus 9 lliIl~IvlllFG~ 22 (73)
T PRK02958 9 WLIVLVIVVLVFGT 22 (73)
T ss_pred HHHHHHHHHHHhCc
Confidence 45677788888886
No 22
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=25.89 E-value=91 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 034498 5 VLRFLIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 5 ~~~~l~~av~~vg~V~lL~~g~ 26 (93)
-+..++-+++++|++|+++.=.
T Consensus 32 W~~~~m~glm~~GllWlvvyYl 53 (87)
T PRK00159 32 WYVVLMLGLMLIGLAWLVVNYL 53 (87)
T ss_pred cHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788889999999887554
No 23
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=1e+02 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Q 034498 6 LRFLIGAVIFLGVIWLLFAGILANHA 31 (93)
Q Consensus 6 ~~~l~~av~~vg~V~lL~~g~l~~~~ 31 (93)
+..++.++++++++..|++.+|.++.
T Consensus 9 l~~il~~~a~l~~a~~l~Lyal~~ni 34 (153)
T COG2332 9 LWIILAGLAGLALAVGLVLYALRSNI 34 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 45677888899999999999887775
No 24
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=25.22 E-value=54 Score=22.23 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|+||++|.
T Consensus 9 lliIlvivlllFG~ 22 (81)
T PRK04598 9 LLIIAVIVVLLFGT 22 (81)
T ss_pred HHHHHHHHHHHhCc
Confidence 45677778888885
No 25
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=25.19 E-value=85 Score=23.54 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Q 034498 4 CVLRFLIGAVIFLGVIWLLFAGILAN 29 (93)
Q Consensus 4 ~~~~~l~~av~~vg~V~lL~~g~l~~ 29 (93)
|.++++..+++++-+++.|.+++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a 26 (163)
T CHL00133 1 MLKKFSSLFLLVFLLIFSIFVSSALA 26 (163)
T ss_pred CHHHHHHHHHHHHHHHHHHcccchhH
Confidence 45678887777777776665554333
No 26
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=23.61 E-value=81 Score=17.57 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
+++|.+|+|..+|+
T Consensus 10 livVLFILLIIiga 23 (26)
T TIGR01732 10 LIVVLFILLVIVGA 23 (26)
T ss_pred HHHHHHHHHHHhhe
Confidence 44566666666654
No 27
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=23.08 E-value=1e+02 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 034498 5 VLRFLIGAVIFLGVIWLLFAGILAN 29 (93)
Q Consensus 5 ~~~~l~~av~~vg~V~lL~~g~l~~ 29 (93)
-++.++-+++++|++|+.+.=..++
T Consensus 32 W~~p~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 32 WYAPLMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred cHHHHHHHHHHHHHHHHhhhhcccC
Confidence 3567788888999999887554433
No 28
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=23.08 E-value=62 Score=22.50 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|.||++|.
T Consensus 9 LlIIlvIvLLlFG~ 22 (89)
T PRK03554 9 LLIIAVIVVLLFGT 22 (89)
T ss_pred HHHHHHHHHHHhCc
Confidence 45677777888885
No 29
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=22.25 E-value=65 Score=21.75 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|+||++|.
T Consensus 9 llIIlvIvlLlFG~ 22 (75)
T PRK04561 9 WLVVLVIVLLVFGT 22 (75)
T ss_pred HHHHHHHHHHHhCC
Confidence 45666778888885
No 30
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=22.23 E-value=68 Score=20.65 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHh
Q 034498 12 AVIFLGVIWLLFAGI 26 (93)
Q Consensus 12 av~~vg~V~lL~~g~ 26 (93)
=++++++|.||++|.
T Consensus 8 ElliIlvv~LlvfGp 22 (63)
T PRK14859 8 ELIVILVIVLIVFGA 22 (63)
T ss_pred HHHHHHHHHHHHhCc
Confidence 356777888888887
No 31
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=21.13 E-value=73 Score=21.21 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|.||++|.
T Consensus 9 lliIl~i~lllFG~ 22 (74)
T PRK01833 9 LLIIVAIIVLLFGT 22 (74)
T ss_pred HHHHHHHHHHHhCc
Confidence 34666677888875
No 32
>PRK14756 hypothetical protein; Provisional
Probab=21.04 E-value=1.3e+02 Score=17.13 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 034498 1 MGGCVLRFLIGAVIFLGVIW 20 (93)
Q Consensus 1 mg~~~~~~l~~av~~vg~V~ 20 (93)
|....+-+|+-.++.+++|+
T Consensus 1 M~tdLK~SL~tTvvaL~~Iv 20 (29)
T PRK14756 1 MSTDLKFSLVTTIIVLGLIV 20 (29)
T ss_pred CCcchhhhHHHHHHHHHHHH
Confidence 56667778888888888764
No 33
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=20.80 E-value=74 Score=21.45 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|+||++|.
T Consensus 9 llIIlvIvlllFG~ 22 (78)
T PRK00720 9 WLIVLAVVLLLFGR 22 (78)
T ss_pred HHHHHHHHHHHhCc
Confidence 45667778888886
No 34
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=20.59 E-value=74 Score=22.03 Aligned_cols=14 Identities=21% Similarity=0.683 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|+||++|.
T Consensus 9 LLIIlvIvLLLFG~ 22 (85)
T PRK01614 9 LLVVGILIVLLFGT 22 (85)
T ss_pred HHHHHHHHHHHhCc
Confidence 45677788888886
No 35
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.53 E-value=70 Score=20.86 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++.+|.||++|.
T Consensus 9 lliIlvI~lllFGp 22 (67)
T PRK03625 9 LLVVAALVVLLFGT 22 (67)
T ss_pred HHHHHHHHHHHcCc
Confidence 45777788888886
No 36
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=20.39 E-value=71 Score=19.80 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++++|.||++|.
T Consensus 8 lliI~vi~llvFGp 21 (51)
T PRK01470 8 LLIVLLIIFVLFGA 21 (51)
T ss_pred HHHHHHHHHHhcCc
Confidence 45777788888886
No 37
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.30 E-value=1.6e+02 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccC
Q 034498 8 FLIGAVIFLGVIWLLFAGILANHA 31 (93)
Q Consensus 8 ~l~~av~~vg~V~lL~~g~l~~~~ 31 (93)
.+..+++.++++..|++.+|.++.
T Consensus 11 ~v~~~~~~~~~a~~Lvl~al~~n~ 34 (159)
T PRK13150 11 VVCAVLAGLGLTTALVLYALRANI 34 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCc
Confidence 344555666777788888877764
No 38
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=20.10 E-value=78 Score=19.26 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHh
Q 034498 13 VIFLGVIWLLFAGI 26 (93)
Q Consensus 13 v~~vg~V~lL~~g~ 26 (93)
++++++|.||++|.
T Consensus 6 l~iI~vvalllfGp 19 (53)
T PF02416_consen 6 LLIILVVALLLFGP 19 (53)
T ss_dssp HHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHHhCc
Confidence 45677777788775
Done!