Query 034498
Match_columns 93
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 05:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 46.3 16 0.00054 23.2 2.7 21 8-28 16-36 (79)
2 2dw3_A Intrinsic membrane prot 43.8 30 0.001 22.6 3.8 23 4-26 26-48 (77)
3 1w5c_T Cytochrome C-550; photo 34.8 8.6 0.00029 25.5 0.1 28 4-31 1-28 (163)
4 1spf_A Pulmonary surfactant-as 34.7 59 0.002 18.4 3.6 21 7-27 11-31 (35)
5 2k9j_B Integrin beta-3; transm 31.2 40 0.0014 19.2 2.6 18 9-26 16-33 (43)
6 2nrg_A Intrinsic membrane prot 26.7 49 0.0017 21.8 2.7 22 4-25 27-48 (82)
7 3j00_Z Cell division protein F 25.1 67 0.0023 20.9 3.2 18 9-26 4-21 (98)
8 3u02_A Putative transcription- 24.2 23 0.0008 26.9 0.9 26 53-78 185-213 (252)
9 2jo1_A Phospholemman; FXYD1, N 23.3 75 0.0026 20.5 3.1 15 9-23 22-36 (72)
10 2jp3_A FXYD domain-containing 21.0 69 0.0024 20.3 2.5 6 11-16 25-30 (67)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.31 E-value=16 Score=23.24 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 034498 8 FLIGAVIFLGVIWLLFAGILA 28 (93)
Q Consensus 8 ~l~~av~~vg~V~lL~~g~l~ 28 (93)
.+.++++++|+++||+.-.+.
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888777765543
No 2
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=43.84 E-value=30 Score=22.60 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 034498 4 CVLRFLIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 4 ~~~~~l~~av~~vg~V~lL~~g~ 26 (93)
|.+-+.+++++|++.++++++..
T Consensus 26 MlkGAg~AAv~f~~~~~~lv~l~ 48 (77)
T 2dw3_A 26 MMKGAGWAGGVFFGTLLLIGFFR 48 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHH
Confidence 56667778888887766666443
No 3
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=34.85 E-value=8.6 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=0.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 034498 4 CVLRFLIGAVIFLGVIWLLFAGILANHA 31 (93)
Q Consensus 4 ~~~~~l~~av~~vg~V~lL~~g~l~~~~ 31 (93)
|.+|++..++++|.++++|++++.+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~~~~~a~~ 28 (163)
T 1w5c_T 1 MLKKCVWLAVALCLCLWQFTMGTALAAE 28 (163)
T ss_dssp ---------------------------C
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3456666677677776666655544443
No 4
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=34.67 E-value=59 Score=18.39 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 034498 7 RFLIGAVIFLGVIWLLFAGIL 27 (93)
Q Consensus 7 ~~l~~av~~vg~V~lL~~g~l 27 (93)
+-++-.++++.++.+.++|+|
T Consensus 11 KrLlivVvVvVlvVvVivGaL 31 (35)
T 1spf_A 11 KRLLVVVVVVVLVVVVIVGAL 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred heEEEEEeeehhhHHHHHHHH
Confidence 334444455555556667765
No 5
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=31.20 E-value=40 Score=19.16 Aligned_cols=18 Identities=28% Similarity=0.650 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034498 9 LIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 9 l~~av~~vg~V~lL~~g~ 26 (93)
..++++++|+++||+.-.
T Consensus 16 vi~~ivliGl~lLliwk~ 33 (43)
T 2k9j_B 16 VMGAILLIGLAALLIWKL 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677788877776543
No 6
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=26.72 E-value=49 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 034498 4 CVLRFLIGAVIFLGVIWLLFAG 25 (93)
Q Consensus 4 ~~~~~l~~av~~vg~V~lL~~g 25 (93)
|.+-+.+++++|++..+++++.
T Consensus 27 MlKGAG~AAv~fl~~~~~lv~l 48 (82)
T 2nrg_A 27 MMKGAGWAGGVFFGTLLLIGFF 48 (82)
T ss_dssp HTHHHHTHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHH
Confidence 4555667777777776666543
No 7
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=25.12 E-value=67 Score=20.92 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034498 9 LIGAVIFLGVIWLLFAGI 26 (93)
Q Consensus 9 l~~av~~vg~V~lL~~g~ 26 (93)
+++.+||+.+|+.|+.+.
T Consensus 4 ~~G~~F~l~Vl~~l~~~~ 21 (98)
T 3j00_Z 4 LAGILFLLTVLTTVLVSG 21 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHH
Confidence 556667777766666555
No 8
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=24.15 E-value=23 Score=26.89 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=14.7
Q ss_pred hccccCCCCCc-cccccc--cCCCCCCcc
Q 034498 53 EKHHAHQDMDL-NYVSKR--RVPNGPDPI 78 (93)
Q Consensus 53 e~~~~~~~~d~-~~~SkR--rVP~GPdPi 78 (93)
+...+...+|- .|.++| =+|.||||+
T Consensus 185 ~~~t~p~t~~nvD~~~~~~~i~Ph~pdPV 213 (252)
T 3u02_A 185 DKWSYPFTYDNVDPYKRTVLITPHGKDPV 213 (252)
T ss_dssp CGGGTTBCSSCCCCCCCCEEECCCTTCSE
T ss_pred HHhcCCCeEeeeeCCCCEEEEecCCCCCE
Confidence 33333444553 233444 479999996
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=23.28 E-value=75 Score=20.49 Aligned_cols=15 Identities=20% Similarity=0.549 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034498 9 LIGAVIFLGVIWLLF 23 (93)
Q Consensus 9 l~~av~~vg~V~lL~ 23 (93)
+|++|+|++-|++|+
T Consensus 22 ifA~vLfi~GI~iil 36 (72)
T 2jo1_A 22 VIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.04 E-value=69 Score=20.35 Aligned_cols=6 Identities=17% Similarity=0.761 Sum_probs=2.2
Q ss_pred HHHHHH
Q 034498 11 GAVIFL 16 (93)
Q Consensus 11 ~av~~v 16 (93)
++|+|+
T Consensus 25 A~vLfi 30 (67)
T 2jp3_A 25 GGLLCI 30 (67)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!