Query 034498
Match_columns 93
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 05:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034498.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034498hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k62b_ a.127.1.1 (B:) Arginin 18.1 15 0.0011 26.9 0.6 17 61-77 423-440 (459)
2 d1ecwa_ a.61.1.1 (A:) SIV matr 16.6 49 0.0035 21.3 2.8 18 2-19 66-83 (114)
3 d2gola1 a.61.1.1 (A:7-107) HIV 13.1 49 0.0036 20.9 2.0 18 2-19 65-82 (101)
4 d1tjva_ a.127.1.1 (A:) Arginin 12.8 26 0.0019 25.4 0.6 17 61-77 412-429 (449)
5 d1m56d_ f.23.8.1 (D:) Bacteria 11.3 87 0.0063 16.9 2.4 14 16-29 28-41 (42)
6 d1tj7a_ a.127.1.1 (A:) Arginin 10.8 32 0.0023 25.0 0.6 17 62-78 424-441 (455)
7 d1qled_ f.23.8.1 (D:) Bacteria 10.3 96 0.007 16.8 2.4 13 17-29 30-42 (43)
8 d1ikna2 b.2.5.3 (A:19-191) p65 8.6 45 0.0033 22.3 0.6 12 73-84 160-171 (173)
9 d1gjia2 b.2.5.3 (A:7-181) p65 7.8 59 0.0043 21.7 0.9 11 75-85 165-175 (175)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 7.0 1.8E+02 0.013 15.2 2.5 20 11-30 14-33 (37)
No 1
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.13 E-value=15 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=14.2
Q ss_pred CCc-cccccccCCCCCCc
Q 034498 61 MDL-NYVSKRRVPNGPDP 77 (93)
Q Consensus 61 ~d~-~~~SkRrVP~GPdP 77 (93)
+|+ .|+..|.+++||.|
T Consensus 423 ldp~~~v~~r~~~GG~ap 440 (459)
T d1k62b_ 423 WDYRHSVEQYGALGGTAR 440 (459)
T ss_dssp TCHHHHHTTCCSTTSSSH
T ss_pred CCHHHHHHhccCCCCCCH
Confidence 566 45899999999998
No 2
>d1ecwa_ a.61.1.1 (A:) SIV matrix antigen {Simian immunodeficiency virus [TaxId: 11723]}
Probab=16.57 E-value=49 Score=21.31 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHHHHHHH
Q 034498 2 GGCVLRFLIGAVIFLGVI 19 (93)
Q Consensus 2 g~~~~~~l~~av~~vg~V 19 (93)
|+.-+++||.+|+++=||
T Consensus 66 GSeeLkSL~ntvavLyCV 83 (114)
T d1ecwa_ 66 GSENLKSLYNTVCVIWCI 83 (114)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred ccHHHhhHHHHHHHhhhh
Confidence 677889999999888776
No 3
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=13.08 E-value=49 Score=20.90 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.2
Q ss_pred CchHHHHHHHHHHHHHHH
Q 034498 2 GGCVLRFLIGAVIFLGVI 19 (93)
Q Consensus 2 g~~~~~~l~~av~~vg~V 19 (93)
|+.-+++||.+|+++=||
T Consensus 65 GSeeLkSL~ntvavLyCV 82 (101)
T d2gola1 65 GSEELRSLYNTIAVLYCV 82 (101)
T ss_dssp TCCTTHHHHHHHHHHHHH
T ss_pred CcHHHHhHhhceeeEEEE
Confidence 666789999999998886
No 4
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}
Probab=12.81 E-value=26 Score=25.36 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=13.8
Q ss_pred CCc-cccccccCCCCCCc
Q 034498 61 MDL-NYVSKRRVPNGPDP 77 (93)
Q Consensus 61 ~d~-~~~SkRrVP~GPdP 77 (93)
+|+ +++..|++++||.|
T Consensus 412 ldp~~~v~~r~~~Gg~ap 429 (449)
T d1tjva_ 412 FNFVNSVEQYTALAGTAK 429 (449)
T ss_dssp SCHHHHHTTCCSTTSSSH
T ss_pred cCHHHHHHhccCCCCCCH
Confidence 465 55789999999988
No 5
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.32 E-value=87 Score=16.89 Aligned_cols=14 Identities=29% Similarity=0.183 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhc
Q 034498 16 LGVIWLLFAGILAN 29 (93)
Q Consensus 16 vg~V~lL~~g~l~~ 29 (93)
+.+|.+|++-++.|
T Consensus 28 i~~i~~liflAi~n 41 (42)
T d1m56d_ 28 VVIVAALIFLALAN 41 (42)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555555544
No 6
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}
Probab=10.79 E-value=32 Score=24.98 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.8
Q ss_pred Cc-cccccccCCCCCCcc
Q 034498 62 DL-NYVSKRRVPNGPDPI 78 (93)
Q Consensus 62 d~-~~~SkRrVP~GPdPi 78 (93)
|+ .|+..|++++||.|-
T Consensus 424 dp~~~v~~r~s~GG~ap~ 441 (455)
T d1tj7a_ 424 SLQSCLDKRAAKGGVSPQ 441 (455)
T ss_dssp SHHHHHHTCCSTTCCSHH
T ss_pred CHHHHHHhCcCCCCCCHH
Confidence 65 557889999999983
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=10.35 E-value=96 Score=16.76 Aligned_cols=13 Identities=38% Similarity=0.094 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhhc
Q 034498 17 GVIWLLFAGILAN 29 (93)
Q Consensus 17 g~V~lL~~g~l~~ 29 (93)
.+|.+|++-++.|
T Consensus 30 ~~i~~liflAi~n 42 (43)
T d1qled_ 30 LSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 3445555555443
No 8
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.64 E-value=45 Score=22.31 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=8.8
Q ss_pred CCCCcccccccC
Q 034498 73 NGPDPIHNRRAS 84 (93)
Q Consensus 73 ~GPdPiHNr~~~ 84 (93)
==+|||||.++-
T Consensus 160 V~S~pI~d~Ks~ 171 (173)
T d1ikna2 160 VLSHPIFDNRAP 171 (173)
T ss_dssp EECCCEECCCC-
T ss_pred eEecccccCcCC
Confidence 347999998864
No 9
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=7.78 E-value=59 Score=21.74 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=0.0
Q ss_pred CCcccccccCC
Q 034498 75 PDPIHNRRASK 85 (93)
Q Consensus 75 PdPiHNr~~~~ 85 (93)
+|||||.++=+
T Consensus 165 S~PI~d~Kapn 175 (175)
T d1gjia2 165 SNPIYDNRAPN 175 (175)
T ss_dssp CCCEEBTTSTT
T ss_pred ccccccCCCCC
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.96 E-value=1.8e+02 Score=15.17 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 034498 11 GAVIFLGVIWLLFAGILANH 30 (93)
Q Consensus 11 ~av~~vg~V~lL~~g~l~~~ 30 (93)
++-..+|+.+..+++.|-++
T Consensus 14 rtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Done!