BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034501
MIDKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSF
NNLEVLDLSWNEIDNLVVPQGKQLKCYLITLF

High Scoring Gene Products

Symbol, full name Information P value
PRK6
AT5G20690 		protein from Arabidopsis thaliana 0.00018

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034501
        (92 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2180409 - symbol:PRK6 "pollen receptor like ki...   102  0.00018   1


>TAIR|locus:2180409 [details] [associations]
            symbol:PRK6 "pollen receptor like kinase 6" species:3702
            "Arabidopsis thaliana" [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0004674 "protein serine/threonine kinase
            activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
            [GO:0006468 "protein phosphorylation" evidence=IEA;ISS] [GO:0007169
            "transmembrane receptor protein tyrosine kinase signaling pathway"
            evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM] [GO:0016301
            "kinase activity" evidence=ISS] [GO:0016772 "transferase activity,
            transferring phosphorus-containing groups" evidence=IEA]
            InterPro:IPR000719 InterPro:IPR011009 Pfam:PF00069 PROSITE:PS00107
            PROSITE:PS00108 PROSITE:PS50011 GO:GO:0016021 GO:GO:0005886
            GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
            eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004672 InterPro:IPR013210
            Pfam:PF08263 EMBL:AF296832 HOGENOM:HOG000116554 EMBL:FJ708781
            IPI:IPI00539126 RefSeq:NP_197569.2 UniGene:At.54932
            ProteinModelPortal:Q3E991 SMR:Q3E991 PaxDb:Q3E991 PRIDE:Q3E991
            EnsemblPlants:AT5G20690.1 GeneID:832192 KEGG:ath:AT5G20690
            GeneFarm:2308 TAIR:At5g20690 InParanoid:Q3E991 OMA:IASNPDE
            ProtClustDB:CLSN2684251 Genevestigator:Q3E991 Uniprot:Q3E991
        Length = 659

 Score = 102 (41.0 bits), Expect = 0.00018, P = 0.00018
 Identities = 25/54 (46%), Positives = 31/54 (57%)

Query:    27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80
             SI SS+T    L ELH++     G     EF S  NL+VLDLS N +D  +VPQ
Sbjct:   159 SIPSSITQLPQLEELHMQSNNLTGEIPP-EFGSMKNLKVLDLSTNSLDG-IVPQ 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        75   0.00091  102 3  11 22  0.46    28
                                                     29  0.47    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  497 (53 KB)
  Total size of DFA:  94 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.11u 0.11s 9.22t   Elapsed:  00:00:00
  Total cpu time:  9.11u 0.11s 9.22t   Elapsed:  00:00:00
  Start:  Thu May  9 17:18:25 2013   End:  Thu May  9 17:18:25 2013

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