BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034501
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 48 FKGTFDVREFDSFNNLEVLDLSWNEIDNL 76
F G+ D R F++ + LEVLDLS+N I L
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRAL 362
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 55 REFDSFNNLEVLDLSWNEIDNLVVPQGKQL 84
R+ D V +L WN++ + VVPQ +++
Sbjct: 671 RKLDLNGRTLVFELEWNKLADRVVPQAREI 700
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 31 SLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 74
S F SL L++R K V + NL+ LDLS N+I+
Sbjct: 317 SAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIE 360
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 35 FSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 74
F SLR+L+++ K R + NL+ LDLS ++I+
Sbjct: 323 FPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIE 362
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 211 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 262
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 212 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 263
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 208 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 259
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 207 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 258
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 208 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 259
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 208 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 259
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81
S ++ L + ++L EL L K D+ S NL LDL+ N+I NL G
Sbjct: 207 SDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQISNLAPLSG 258
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 38 LRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI 73
L+EL+L G V FDS L VLDL N++
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
>pdb|2L9D|A Chain A, Solution Structure Of The Protein Yp_546394.1, The First
Structural Representative Of The Pfam Family Pf12112
Length = 108
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 40 ELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78
+L L+DT +G + F + N L +LD N ID V
Sbjct: 67 DLKLKDTNPEGFNQLMHFATENQLNILDAEGNSIDAAQV 105
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 35 FSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG---KQLKCYLITL 91
+ L+EL L + + FD NL+ L LS N++ + VP G + K ITL
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS--VPHGAFDRLGKLQTITL 186
Query: 92 F 92
F
Sbjct: 187 F 187
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 35 FSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG---KQLKCYLITL 91
+ L+EL L + + FD NL+ L LS N++ + VP G + K ITL
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQS--VPHGAFDRLGKLQTITL 186
Query: 92 F 92
F
Sbjct: 187 F 187
>pdb|4A6O|A Chain A, Cpgh89cbm32-4, Produced By Clostridium Perfringens, In
Complex With Glcnac-Alpha-1,4-Galactose
pdb|4A6O|B Chain B, Cpgh89cbm32-4, Produced By Clostridium Perfringens, In
Complex With Glcnac-Alpha-1,4-Galactose
Length = 161
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 40 ELHLRDTGFKGTFDVR-EFDSFNNLEVLDLSWNEIDN 75
ELH GF+ F V E +S N VLD++ N DN
Sbjct: 83 ELHFEKEGFRFQFKVEVEDESGNRETVLDMTSNTEDN 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,156,379
Number of Sequences: 62578
Number of extensions: 70578
Number of successful extensions: 239
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 38
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)