Query 034501
Match_columns 92
No_of_seqs 102 out of 2118
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 05:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w8a_A SLIT protein; signaling 99.4 1.2E-12 4.2E-17 78.7 6.6 74 8-82 50-123 (192)
2 2v70_A SLIT-2, SLIT homolog 2 99.3 5.3E-12 1.8E-16 77.4 8.3 72 8-80 77-148 (220)
3 2wfh_A SLIT homolog 2 protein 99.3 3.9E-12 1.3E-16 76.7 7.5 74 7-81 49-122 (193)
4 2ifg_A High affinity nerve gro 99.3 3.9E-12 1.3E-16 82.1 7.7 77 5-82 24-101 (347)
5 3g39_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 74.3 7.5 68 12-80 30-97 (170)
6 3rgz_A Protein brassinosteroid 99.3 2.2E-12 7.6E-17 90.8 6.1 70 9-79 629-698 (768)
7 2r9u_A Variable lymphocyte rec 99.3 9.5E-12 3.2E-16 74.0 7.5 67 12-79 33-99 (174)
8 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.3E-16 75.7 8.1 71 8-79 76-146 (220)
9 3rgz_A Protein brassinosteroid 99.3 3.7E-12 1.3E-16 89.7 6.1 72 7-79 651-722 (768)
10 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 3.9E-16 75.9 7.4 74 7-81 51-124 (220)
11 2o6r_A Variable lymphocyte rec 99.3 2.1E-11 7E-16 72.2 8.1 72 8-80 48-119 (177)
12 2je0_A Acidic leucine-rich nuc 99.3 1.3E-11 4.4E-16 71.2 6.8 73 6-78 58-130 (149)
13 2v70_A SLIT-2, SLIT homolog 2 99.3 1.1E-11 3.8E-16 76.0 6.8 75 7-82 52-126 (220)
14 2ell_A Acidic leucine-rich nuc 99.3 3.4E-11 1.2E-15 70.6 8.0 73 6-78 65-137 (168)
15 4g8a_A TOLL-like receptor 4; l 99.2 2.5E-11 8.6E-16 82.6 8.0 74 7-81 489-562 (635)
16 3g39_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 71.0 7.8 71 7-78 49-119 (170)
17 4g8a_A TOLL-like receptor 4; l 99.2 1.7E-11 5.7E-16 83.5 6.8 73 7-80 71-143 (635)
18 3m19_A Variable lymphocyte rec 99.2 4.7E-11 1.6E-15 74.1 8.1 70 9-79 104-173 (251)
19 3m19_A Variable lymphocyte rec 99.2 5.1E-11 1.7E-15 74.0 8.0 70 8-78 55-124 (251)
20 2o6s_A Variable lymphocyte rec 99.2 5.7E-11 1.9E-15 71.8 8.1 69 9-78 73-141 (208)
21 3rfs_A Internalin B, repeat mo 99.2 6.2E-11 2.1E-15 74.4 8.4 68 8-76 81-148 (272)
22 2r9u_A Variable lymphocyte rec 99.2 7.5E-11 2.6E-15 70.1 7.8 71 7-78 52-122 (174)
23 2o6s_A Variable lymphocyte rec 99.2 8.3E-11 2.8E-15 71.1 8.1 72 8-80 48-119 (208)
24 3e6j_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 73.6 6.7 40 10-49 62-101 (229)
25 1w8a_A SLIT protein; signaling 99.2 4.8E-11 1.6E-15 71.7 5.9 71 7-78 73-143 (192)
26 3e6j_A Variable lymphocyte rec 99.2 1.2E-10 4.2E-15 71.6 7.8 73 7-81 83-155 (229)
27 3rfs_A Internalin B, repeat mo 99.2 1.3E-10 4.5E-15 72.9 8.1 69 9-78 130-198 (272)
28 4ezg_A Putative uncharacterize 99.2 2E-11 7E-16 73.4 4.1 66 8-76 108-174 (197)
29 3zyi_A Leucine-rich repeat-con 99.2 1.3E-10 4.5E-15 77.4 7.7 76 5-81 211-286 (452)
30 3zyj_A Leucine-rich repeat-con 99.2 1E-10 3.5E-15 77.7 7.1 77 4-81 199-275 (440)
31 3v47_A TOLL-like receptor 5B a 99.1 1.2E-10 4.2E-15 77.1 7.4 71 8-79 319-389 (455)
32 1a9n_A U2A', U2A'; complex (nu 99.1 1.4E-10 4.7E-15 68.7 6.6 73 6-78 58-130 (176)
33 1p9a_G Platelet glycoprotein I 99.1 2.1E-10 7.1E-15 72.9 7.8 69 9-78 97-165 (290)
34 2wfh_A SLIT homolog 2 protein 99.1 2.7E-10 9.2E-15 68.6 7.7 69 12-82 31-99 (193)
35 1ogq_A PGIP-2, polygalacturona 99.1 4E-11 1.4E-15 76.7 4.2 69 8-77 97-165 (313)
36 4fcg_A Uncharacterized protein 99.1 1.2E-10 4E-15 75.1 6.2 71 8-79 225-295 (328)
37 2o6q_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 71.0 8.1 70 9-79 130-199 (270)
38 1dce_A Protein (RAB geranylger 99.1 1.4E-10 4.9E-15 79.8 6.8 66 7-76 458-523 (567)
39 2xot_A Amphoterin-induced prot 99.1 1.6E-10 5.4E-15 75.2 6.4 66 10-76 62-127 (361)
40 2o6r_A Variable lymphocyte rec 99.1 3.8E-10 1.3E-14 66.7 7.5 69 11-80 27-95 (177)
41 2o6q_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 70.5 8.1 69 10-79 107-175 (270)
42 2z66_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 71.3 7.9 72 7-79 170-241 (306)
43 1ozn_A Reticulon 4 receptor; N 99.1 3.6E-10 1.2E-14 71.1 7.5 65 11-76 104-168 (285)
44 3vq2_A TLR4, TOLL-like recepto 99.1 2.6E-10 8.7E-15 78.0 7.2 70 8-78 52-121 (606)
45 3v47_A TOLL-like receptor 5B a 99.1 1.8E-10 6.2E-15 76.3 6.3 74 7-81 294-367 (455)
46 2xot_A Amphoterin-induced prot 99.1 1E-10 3.5E-15 76.2 5.0 72 7-79 83-154 (361)
47 1ogq_A PGIP-2, polygalacturona 99.1 4.2E-11 1.5E-15 76.6 3.0 73 7-80 71-144 (313)
48 4ezg_A Putative uncharacterize 99.1 2.4E-10 8.1E-15 68.7 5.7 74 3-77 79-153 (197)
49 1ozn_A Reticulon 4 receptor; N 99.1 6.8E-10 2.3E-14 69.8 8.0 71 8-79 76-147 (285)
50 3zyi_A Leucine-rich repeat-con 99.1 3.2E-10 1.1E-14 75.5 6.8 72 7-79 94-165 (452)
51 1p9a_G Platelet glycoprotein I 99.1 1.2E-09 4E-14 69.4 8.6 72 7-79 119-190 (290)
52 3t6q_A CD180 antigen; protein- 99.1 3.6E-10 1.2E-14 77.3 6.6 70 7-77 52-121 (606)
53 3oja_B Anopheles plasmodium-re 99.1 6.8E-10 2.3E-14 76.3 8.0 72 7-79 94-165 (597)
54 3zyj_A Leucine-rich repeat-con 99.1 5.6E-10 1.9E-14 74.1 7.3 72 7-79 83-154 (440)
55 3o6n_A APL1; leucine-rich repe 99.1 8.5E-10 2.9E-14 72.1 8.0 72 7-79 88-159 (390)
56 2z62_A TOLL-like receptor 4, v 99.0 5.6E-10 1.9E-14 69.9 6.9 69 8-77 48-116 (276)
57 2z80_A TOLL-like receptor 2, v 99.0 5E-10 1.7E-14 72.4 6.6 70 8-78 72-141 (353)
58 1dce_A Protein (RAB geranylger 99.0 7.1E-10 2.4E-14 76.3 7.5 70 7-79 481-551 (567)
59 2id5_A Lingo-1, leucine rich r 99.0 6.2E-10 2.1E-14 74.3 6.7 72 7-79 51-122 (477)
60 2je0_A Acidic leucine-rich nuc 99.0 5.5E-10 1.9E-14 64.2 5.7 68 7-77 37-104 (149)
61 4fcg_A Uncharacterized protein 99.0 8.9E-10 3E-14 71.0 7.2 70 8-79 202-271 (328)
62 2ifg_A High affinity nerve gro 99.0 1.3E-09 4.6E-14 70.2 7.6 68 7-76 51-118 (347)
63 3vq2_A TLR4, TOLL-like recepto 99.0 8.4E-10 2.9E-14 75.4 6.8 72 7-79 468-539 (606)
64 2z7x_B TOLL-like receptor 1, v 99.0 4.4E-10 1.5E-14 75.7 5.3 65 12-77 21-85 (520)
65 1a9n_A U2A', U2A'; complex (nu 99.0 3.3E-10 1.1E-14 67.0 4.1 70 6-78 35-105 (176)
66 2z66_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 70.4 5.8 68 8-76 122-190 (306)
67 3oja_B Anopheles plasmodium-re 99.0 6.3E-10 2.2E-14 76.5 6.0 78 7-85 118-195 (597)
68 1xku_A Decorin; proteoglycan, 99.0 9.3E-10 3.2E-14 70.5 6.3 73 12-85 52-124 (330)
69 2ell_A Acidic leucine-rich nuc 99.0 4.1E-10 1.4E-14 65.9 4.3 67 8-77 45-111 (168)
70 1ziw_A TOLL-like receptor 3; i 99.0 1.3E-09 4.5E-14 75.4 7.3 71 8-79 45-115 (680)
71 2z63_A TOLL-like receptor 4, v 99.0 1.1E-09 3.8E-14 74.1 6.8 70 8-78 48-117 (570)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.8E-10 2.3E-14 75.6 5.7 66 12-78 52-117 (562)
73 2z81_A CD282 antigen, TOLL-lik 99.0 1.1E-09 3.8E-14 74.0 6.7 69 7-76 45-113 (549)
74 3o6n_A APL1; leucine-rich repe 99.0 1.1E-09 3.7E-14 71.6 6.1 78 7-85 112-189 (390)
75 2id5_A Lingo-1, leucine rich r 99.0 1E-09 3.5E-14 73.3 6.0 72 8-80 244-315 (477)
76 2z63_A TOLL-like receptor 4, v 99.0 8.1E-10 2.8E-14 74.8 5.5 68 10-78 443-511 (570)
77 2z62_A TOLL-like receptor 4, v 99.0 1.4E-09 4.9E-14 68.0 6.3 67 8-75 72-138 (276)
78 4fmz_A Internalin; leucine ric 99.0 1E-09 3.4E-14 70.5 5.5 71 5-78 258-328 (347)
79 1xku_A Decorin; proteoglycan, 99.0 3.7E-09 1.2E-13 67.7 8.1 72 7-80 211-282 (330)
80 1wwl_A Monocyte differentiatio 99.0 8.7E-10 3E-14 70.4 5.2 70 9-78 198-270 (312)
81 2ft3_A Biglycan; proteoglycan, 99.0 2.8E-09 9.5E-14 68.4 7.4 72 7-80 212-283 (332)
82 2ft3_A Biglycan; proteoglycan, 99.0 9.2E-10 3.1E-14 70.6 5.1 67 12-79 54-120 (332)
83 4b8c_D Glucose-repressible alc 98.9 7.1E-10 2.4E-14 78.1 4.7 64 10-76 245-308 (727)
84 4eco_A Uncharacterized protein 98.9 2E-09 7E-14 74.6 6.8 75 10-86 511-591 (636)
85 1h6t_A Internalin B; cell adhe 98.9 2E-09 7E-14 68.3 6.0 66 6-76 106-171 (291)
86 3t6q_A CD180 antigen; protein- 98.9 1.2E-09 4.2E-14 74.6 5.2 70 8-78 445-517 (606)
87 2z7x_B TOLL-like receptor 1, v 98.9 1.3E-09 4.4E-14 73.4 4.9 66 9-75 321-388 (520)
88 4b8c_D Glucose-repressible alc 98.9 6.8E-10 2.3E-14 78.3 3.7 72 7-81 265-336 (727)
89 1ziw_A TOLL-like receptor 3; i 98.9 2.3E-09 7.9E-14 74.2 6.2 70 9-79 70-139 (680)
90 4fmz_A Internalin; leucine ric 98.9 3.1E-09 1E-13 68.3 6.2 69 3-74 278-346 (347)
91 2xwt_C Thyrotropin receptor; s 98.9 1.2E-09 4.2E-14 67.2 4.1 69 8-77 51-121 (239)
92 1h6t_A Internalin B; cell adhe 98.9 2.6E-09 8.9E-14 67.8 5.6 66 6-76 62-127 (291)
93 1xeu_A Internalin C; cellular 98.9 2E-09 6.8E-14 67.5 4.8 64 7-76 58-121 (263)
94 1h6u_A Internalin H; cell adhe 98.9 3.3E-09 1.1E-13 67.7 5.9 66 6-76 57-122 (308)
95 2z81_A CD282 antigen, TOLL-lik 98.9 3.9E-09 1.3E-13 71.3 6.5 72 7-79 69-142 (549)
96 1wwl_A Monocyte differentiatio 98.9 8.6E-10 2.9E-14 70.4 3.0 65 9-75 118-187 (312)
97 4ecn_A Leucine-rich repeat pro 98.9 4.6E-09 1.6E-13 75.5 6.9 76 10-87 751-832 (876)
98 2z80_A TOLL-like receptor 2, v 98.9 5.3E-09 1.8E-13 67.6 6.4 73 7-79 95-168 (353)
99 1m9s_A Internalin B; cell inva 98.9 4.1E-09 1.4E-13 73.1 6.2 65 7-76 104-168 (605)
100 4eco_A Uncharacterized protein 98.9 2.7E-09 9.1E-14 74.0 5.2 67 8-75 202-288 (636)
101 1xeu_A Internalin C; cellular 98.9 6E-09 2.1E-13 65.3 6.1 63 8-76 81-143 (263)
102 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 2.9E-09 9.9E-14 72.6 5.0 67 9-75 350-417 (562)
103 1h6u_A Internalin H; cell adhe 98.8 1.6E-08 5.5E-13 64.5 8.1 16 10-25 105-120 (308)
104 3j0a_A TOLL-like receptor 5; m 98.8 4.8E-09 1.6E-13 74.6 6.0 72 7-78 68-140 (844)
105 2xwt_C Thyrotropin receptor; s 98.8 2.3E-09 8E-14 65.9 3.6 78 8-87 151-231 (239)
106 4glp_A Monocyte differentiatio 98.8 2.3E-09 7.7E-14 68.3 3.6 74 10-85 195-275 (310)
107 1m9s_A Internalin B; cell inva 98.8 6.1E-09 2.1E-13 72.3 5.9 68 4-76 57-124 (605)
108 3j0a_A TOLL-like receptor 5; m 98.8 8.4E-09 2.9E-13 73.4 6.2 71 8-79 286-356 (844)
109 3oja_A Leucine-rich immune mol 98.8 1.9E-09 6.5E-14 72.8 2.8 40 10-49 142-182 (487)
110 3oja_A Leucine-rich immune mol 98.8 3.2E-09 1.1E-13 71.7 3.4 69 10-79 118-187 (487)
111 3bz5_A Internalin-J, INLJ; leu 98.8 2.2E-08 7.4E-13 67.2 6.6 62 8-76 60-121 (457)
112 3rw6_A Nuclear RNA export fact 98.7 3.1E-08 1.1E-12 62.7 6.8 68 10-78 168-237 (267)
113 3o53_A Protein LRIM1, AGAP0063 98.7 5.3E-09 1.8E-13 66.9 3.3 66 10-78 142-208 (317)
114 1o6v_A Internalin A; bacterial 98.7 3.7E-08 1.3E-12 65.8 7.4 69 5-78 61-129 (466)
115 4ecn_A Leucine-rich repeat pro 98.7 1.1E-08 3.9E-13 73.5 4.9 67 8-75 444-530 (876)
116 3bz5_A Internalin-J, INLJ; leu 98.7 3.5E-08 1.2E-12 66.3 6.7 70 8-84 187-256 (457)
117 3o53_A Protein LRIM1, AGAP0063 98.7 4.6E-08 1.6E-12 62.5 6.6 61 11-74 190-250 (317)
118 1o6v_A Internalin A; bacterial 98.7 6.7E-08 2.3E-12 64.6 7.5 65 9-78 306-370 (466)
119 4glp_A Monocyte differentiatio 98.7 1.2E-08 4.1E-13 65.0 3.6 16 61-76 224-239 (310)
120 4ay9_X Follicle-stimulating ho 98.6 6.1E-08 2.1E-12 62.7 4.2 67 13-79 31-122 (350)
121 1ds9_A Outer arm dynein; leuci 98.5 2.2E-09 7.5E-14 64.5 -2.5 65 8-76 44-108 (198)
122 3cvr_A Invasion plasmid antige 98.5 3.2E-07 1.1E-11 63.4 6.0 56 11-75 99-154 (571)
123 2ast_B S-phase kinase-associat 98.5 1.4E-07 4.8E-12 60.2 3.9 61 10-71 91-152 (336)
124 1jl5_A Outer protein YOPM; leu 98.4 7.1E-07 2.4E-11 59.9 7.3 64 7-77 148-211 (454)
125 2ast_B S-phase kinase-associat 98.4 9.5E-08 3.2E-12 61.0 2.5 67 8-75 114-183 (336)
126 2ca6_A RAN GTPase-activating p 98.4 1.6E-07 5.4E-12 61.3 3.2 68 7-75 211-288 (386)
127 4ay9_X Follicle-stimulating ho 98.4 1.4E-07 4.8E-12 61.0 2.8 73 12-86 154-227 (350)
128 3goz_A Leucine-rich repeat-con 98.4 1.1E-07 3.9E-12 61.7 2.2 68 10-77 48-125 (362)
129 2ca6_A RAN GTPase-activating p 98.4 1.4E-07 5E-12 61.5 2.4 70 8-77 240-319 (386)
130 3g06_A SSPH2 (leucine-rich rep 98.4 3.6E-07 1.2E-11 63.7 4.4 63 10-78 239-301 (622)
131 3cvr_A Invasion plasmid antige 98.4 8.1E-07 2.8E-11 61.4 6.1 59 11-78 139-197 (571)
132 1jl5_A Outer protein YOPM; leu 98.3 1.8E-06 6E-11 57.9 7.3 64 7-77 190-253 (454)
133 3goz_A Leucine-rich repeat-con 98.3 2.8E-07 9.6E-12 59.8 3.3 69 10-79 20-98 (362)
134 1ds9_A Outer arm dynein; leuci 98.3 2.8E-08 9.6E-13 59.6 -1.6 69 7-78 13-87 (198)
135 1z7x_W Ribonuclease inhibitor; 98.2 2.9E-07 9.9E-12 60.9 0.2 66 10-76 339-413 (461)
136 3g06_A SSPH2 (leucine-rich rep 98.1 6.6E-06 2.3E-10 57.4 6.5 16 61-76 141-156 (622)
137 3ogk_B Coronatine-insensitive 98.1 1.8E-06 6.2E-11 58.7 2.6 68 10-77 461-529 (592)
138 3sb4_A Hypothetical leucine ri 98.0 7.2E-06 2.5E-10 52.5 4.6 67 10-79 248-315 (329)
139 3sb4_A Hypothetical leucine ri 98.0 1.4E-05 4.8E-10 51.2 5.5 70 11-83 225-295 (329)
140 1z7x_W Ribonuclease inhibitor; 97.9 5.5E-06 1.9E-10 54.8 2.5 64 10-74 54-126 (461)
141 3un9_A NLR family member X1; l 97.9 4.7E-06 1.6E-10 54.7 2.0 66 10-75 181-253 (372)
142 3rw6_A Nuclear RNA export fact 97.9 1.3E-06 4.5E-11 55.3 -0.7 44 33-76 167-211 (267)
143 2p1m_B Transport inhibitor res 97.7 1E-05 3.4E-10 55.0 1.8 63 11-73 455-518 (594)
144 3un9_A NLR family member X1; l 97.7 2.1E-05 7.2E-10 51.6 3.1 67 10-76 153-226 (372)
145 1io0_A Tropomodulin; LRR prote 97.6 6.2E-05 2.1E-09 44.8 4.0 65 11-75 64-137 (185)
146 1io0_A Tropomodulin; LRR prote 97.6 4.2E-05 1.4E-09 45.5 3.2 70 7-76 31-108 (185)
147 3ogk_B Coronatine-insensitive 97.6 2.6E-05 9E-10 53.0 2.4 66 10-75 162-234 (592)
148 2p1m_B Transport inhibitor res 97.5 2E-05 6.8E-10 53.6 0.6 66 10-75 103-170 (594)
149 3rfe_A Platelet glycoprotein I 97.4 0.00058 2E-08 38.6 6.1 56 16-74 12-68 (130)
150 3e4g_A ATP synthase subunit S, 97.4 0.00012 4.2E-09 43.7 3.0 64 7-71 80-149 (176)
151 2ra8_A Uncharacterized protein 97.3 0.00011 3.8E-09 48.2 2.1 64 11-74 251-320 (362)
152 3rfe_A Platelet glycoprotein I 97.0 0.0014 4.7E-08 37.0 4.5 38 13-50 32-69 (130)
153 3e4g_A ATP synthase subunit S, 96.9 0.00041 1.4E-08 41.4 2.1 64 12-76 61-130 (176)
154 4fdw_A Leucine rich hypothetic 96.8 0.0037 1.3E-07 41.4 5.9 44 31-77 318-361 (401)
155 4fdw_A Leucine rich hypothetic 96.7 0.0051 1.7E-07 40.7 6.0 71 7-80 266-341 (401)
156 4h09_A Hypothetical leucine ri 96.2 0.01 3.6E-07 38.3 5.5 61 8-70 282-342 (379)
157 4fs7_A Uncharacterized protein 96.0 0.013 4.4E-07 38.3 4.9 59 10-71 295-353 (394)
158 4gt6_A Cell surface protein; l 95.9 0.031 1E-06 36.5 6.4 62 8-72 307-368 (394)
159 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0098 3.3E-07 36.0 3.2 64 11-74 40-111 (197)
160 4fs7_A Uncharacterized protein 95.6 0.029 1E-06 36.6 5.4 62 7-71 315-376 (394)
161 4h09_A Hypothetical leucine ri 95.5 0.042 1.4E-06 35.5 5.9 67 10-79 261-327 (379)
162 1pgv_A TMD-1, tropomodulin TMD 94.9 0.037 1.3E-06 33.5 3.9 64 8-71 66-136 (197)
163 4gt6_A Cell surface protein; l 94.4 0.093 3.2E-06 34.2 5.3 65 10-78 286-350 (394)
164 2ra8_A Uncharacterized protein 94.3 0.073 2.5E-06 34.8 4.6 16 60-75 278-293 (362)
165 2lz0_A Uncharacterized protein 75.7 5.4 0.00019 21.1 4.0 42 27-70 11-52 (100)
No 1
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.38 E-value=1.2e-12 Score=78.73 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=62.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK 82 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~ 82 (92)
++.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+ ..|.++++|++|++++|++++..+....
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 6778899999999999998878888899999999999999997766 4588889999999999999888776433
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=5.3e-12 Score=77.40 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=46.8
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.++..
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHH
Confidence 4556666666666666666555556666677777777777666555 35666677777777777777665543
No 3
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.9e-12 Score=76.74 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=58.4
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+ ..|..+++|++|++++|+++..++..+
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 56677888888888888887767778888888888888888887665 467888888888888888888776533
No 4
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=3.9e-12 Score=82.08 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=67.0
Q ss_pred ccccCCCCCCCEEeccC-ccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCc
Q 034501 5 FVVSKGLSKLKSLGLAG-IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK 82 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~-n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~ 82 (92)
++.++.+++|+.|++++ |.+++..+..|..+++|+.|++++|++++..+ ..|.++++|+.|+|++|++++.++..+.
T Consensus 24 ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 34467788899999996 99998877889999999999999999998777 5789999999999999999998876443
No 5
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=6.7e-12 Score=74.29 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=51.3
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
++++.|++++|.+.+..|..+..+++|+.|++++|++++..+ ..|..+++|++|++++|++++.++..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeCHHH
Confidence 667788888888887767777778888888888888876554 45677788888888888887777653
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=2.2e-12 Score=90.83 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=38.3
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.+++|+.+++++|+++|.+|..+..++.|+.|++++|+++|.+| ..++++++|+.||+++|++++..|.
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECCCG
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcCCh
Confidence 344555555555555555555555555555555555555555555 2455555555555555555554443
No 7
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=9.5e-12 Score=73.99 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=51.5
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.++.|++++|.+.+..|..+..+++|+.|++++|++++..+ ..|..+++|++|++++|++++.++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCccceeCHH
Confidence 667888888888887767777788888888888888886544 4567788888888888888877665
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.30 E-value=1.2e-11 Score=75.75 Aligned_cols=71 Identities=27% Similarity=0.261 Sum_probs=33.3
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+..+++|+.|++++|.++...+..+..+++|+.|++++|++.+..+ ..|..+++|++|++++|++++.++.
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH
Confidence 3344444444444444443323333444455555555555544333 2344455555555555555555443
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=3.7e-12 Score=89.74 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=68.0
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.++.|+.|++++|.++|.+|..+..+++|+.|++++|+++|.+| ..+..++.|+++|+++|+++|..|.
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-GGGGGCCCCSEEECCSSEEEEECCS
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECcCCcccccCCC
Confidence 57789999999999999999999999999999999999999999999 4799999999999999999998876
No 10
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=1.2e-11 Score=75.90 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=62.4
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++...+ ..|..+++|+.|++++|++++.++..+
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 46778899999999999998878888999999999999999996544 567889999999999999998877644
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2.1e-11 Score=72.18 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=55.0
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
++.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+ ..+..+++|+++++++|++++.++..
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceEeCHHH
Confidence 5667888888888888887655556778888888888888886555 45677888888888888888777653
No 12
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=1.3e-11 Score=71.19 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=56.4
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
..++.+++|+.+++++|.+.+.+|..+..+++|+.+++++|.+++......+..+++|+++++++|++++.++
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 4566778888888888888876677777788888888888888864321357778888888888888887765
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=75.98 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=65.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCc
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK 82 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~ 82 (92)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+ ..|..+++|++|++++|++++.++..+.
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 126 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDSFI 126 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTTSST
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCeECHhHcC
Confidence 36788999999999999998777789999999999999999997666 5688999999999999999998776443
No 14
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=3.4e-11 Score=70.62 Aligned_cols=73 Identities=23% Similarity=0.221 Sum_probs=59.8
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
..++.+++|+.+++++|.+.+..|..+..+++|+.+++++|.+++......+..+++|+++++++|.+++.++
T Consensus 65 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 5667788899999999999887777777789999999999998875432468888999999999999888766
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=2.5e-11 Score=82.64 Aligned_cols=74 Identities=24% Similarity=0.277 Sum_probs=66.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.+..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+ ..|.++++|++||+++|++++.++...
T Consensus 489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 46778999999999999999888889999999999999999998777 578999999999999999999988754
No 16
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=3.9e-11 Score=70.96 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=62.8
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+ ..|..+++|+++++++|.++...+
T Consensus 49 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 49 VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 46789999999999999998767678899999999999999997666 568899999999999999987654
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.24 E-value=1.7e-11 Score=83.51 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=48.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
.+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+ ..|.++++|++|++++|++++.++..
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCCEEECCCCcCCCCChhh
Confidence 35566777777777777776555566677777777777777765433 45666777777777777776666543
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=4.7e-11 Score=74.14 Aligned_cols=70 Identities=26% Similarity=0.362 Sum_probs=37.0
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++++.++.
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH
Confidence 344555555555555554433334555555555555555554333 2355555666666666666555543
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=5.1e-11 Score=74.00 Aligned_cols=70 Identities=24% Similarity=0.255 Sum_probs=34.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++++.++
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcCCCcCh
Confidence 3445555555555555555444444555555555555555553333 234444445555555554444443
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=5.7e-11 Score=71.81 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=32.1
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.++
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCH
Confidence 344444444444444444333334444555555555555443333 234445555555555555554444
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.23 E-value=6.2e-11 Score=74.44 Aligned_cols=68 Identities=29% Similarity=0.402 Sum_probs=26.9
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
++.+++|+.+++++|.+++..+..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++.
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCcc
Confidence 3334444444444444443333333344444444444444443222 2233344444444444444433
No 22
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=7.5e-11 Score=70.06 Aligned_cols=71 Identities=24% Similarity=0.225 Sum_probs=62.2
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.++.+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+ ..|..+++|+++++++|.+...+.
T Consensus 52 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 52 VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 47789999999999999998756567899999999999999997655 468899999999999999987654
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.21 E-value=8.3e-11 Score=71.08 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=56.6
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
++.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.++..
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQSLPDGV 119 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcccCHhH
Confidence 5677888888888888887655567788888888888888886554 45778888888888888888877653
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=4.5e-11 Score=73.60 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=15.8
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFK 49 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~ 49 (92)
.+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 3344444444444443332222333444444444444444
No 25
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=4.8e-11 Score=71.72 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=63.9
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..| ..+..+++|+++++++|.+++..+
T Consensus 73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGG
T ss_pred HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCc
Confidence 57789999999999999999877779999999999999999998877 468999999999999999987543
No 26
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.18 E-value=1.2e-10 Score=71.61 Aligned_cols=73 Identities=19% Similarity=0.225 Sum_probs=61.4
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|++. .+| ..+..+++|++|++++|++++.++...
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP-RGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCC-TTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccC-cccccCCCCCEEECCCCcCCccCHHHH
Confidence 3678899999999999999876666788999999999999999 455 357889999999999999998876533
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=1.3e-10 Score=72.93 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=31.8
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..+ ..+..+++|++|++++|++++.++
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCH
Confidence 344444444444444444333334444445555555554443333 234444555555555555554444
No 28
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=2e-11 Score=73.44 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=32.1
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCc-cCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
++.+++|+.+++++|.+.+..+..+..+++|+.+++++|. +.. .+ .+..+++|+.|++++|++++.
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~--~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM--PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG--GGGGCSSCCEEECTTBCCCCC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH--hhcCCCCCCEEECCCCCCcCh
Confidence 3444455555555555544444445555555555555554 332 22 244455555555555555544
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.15 E-value=1.3e-10 Score=77.40 Aligned_cols=76 Identities=21% Similarity=0.210 Sum_probs=61.9
Q ss_pred ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
++.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.++...
T Consensus 211 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHHh
Confidence 4456677788888888888888778888888999999999999887666 468888999999999999988877643
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=1e-10 Score=77.67 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=61.2
Q ss_pred cccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 4 KFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 4 ~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.++.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.++...
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhHh
Confidence 34456677788888888888887777788888888888888888887666 568888899999999999988877643
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.15 E-value=1.2e-10 Score=77.08 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=41.9
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..+ ..+..+++|++|++++|++++.++.
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh-hhccccccccEEECCCCccccCCHh
Confidence 4455566666666666655555555566666666666666655444 3455566666666666666665553
No 32
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=1.4e-10 Score=68.68 Aligned_cols=73 Identities=21% Similarity=0.121 Sum_probs=46.1
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
..++.+++|+.+++++|.+.+..+..+..+++|+.+++++|.+....+...+..+++|+++++++|.++..+.
T Consensus 58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 4556667777777777777754333346677777777777777543221246667777777777777765543
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.14 E-value=2.1e-10 Score=72.89 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.++
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCT
T ss_pred ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCH
Confidence 344555555555555554444445555555555555555554333 234445555555555555555444
No 34
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.7e-10 Score=68.62 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=61.5
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCc
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGK 82 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~ 82 (92)
++++.|++++|.++ .+|..+..+++|+.|++++|.+++..+ ..|.++++|++|++++|++++.++..+.
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 58999999999999 457889999999999999999997766 5799999999999999999999886443
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.13 E-value=4e-11 Score=76.73 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=37.9
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
++.+++|+++++++|.+.+.+|..+..+++|+.+++++|.+.+..| ..+..+++|++|++++|++++..
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~ 165 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAI 165 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcC
Confidence 3445555555555555555555555555555555555555555554 24555555555555555555433
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.12 E-value=1.2e-10 Score=75.12 Aligned_cols=71 Identities=24% Similarity=0.184 Sum_probs=37.2
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.+++|+.|++++|.+.+.+|..+..+++|+.+++++|.+.+.+| ..+.++++|+.|++++|++.+..|.
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhccH
Confidence 3344555555555555555555555555555555555555555555 2355555555555555555554444
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=3.3e-10 Score=70.96 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=35.4
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..|..+++|++|++++|++++.++.
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCHH
Confidence 344555555555555554333334455555555555555554333 2345555555555555555555443
No 38
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.4e-10 Score=79.75 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=36.3
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++ +| .++++++|++|++++|++++.
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSS
T ss_pred CccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCC
Confidence 3445555666666666555 345555555555555555555554 23 355555555555555555555
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=1.6e-10 Score=75.24 Aligned_cols=66 Identities=29% Similarity=0.234 Sum_probs=30.0
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|++....+ ..|..+++|+.|++++|++++.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEE
Confidence 44445555555555444433344444444445444444443322 2344444444444444444444
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.11 E-value=3.8e-10 Score=66.70 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
.++++.+++++|.+.+..+..+..+++|+.+++++|.+++..+ ..+..+++|+.|++++|++++.++..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCHHH
Confidence 4789999999999998766678899999999999999997655 46789999999999999999988764
No 41
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=4.1e-10 Score=70.54 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++++.++.
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChh
Confidence 34444444444444444433334445555555555555553332 2344555555555555555555443
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.10 E-value=4.2e-10 Score=71.34 Aligned_cols=72 Identities=25% Similarity=0.297 Sum_probs=53.6
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..+ ..+..+++|+.+++++|++++..+.
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCHH
Confidence 45667778888888887777666677777888888888888776554 3577778888888888888776654
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.10 E-value=3.6e-10 Score=71.10 Aligned_cols=65 Identities=26% Similarity=0.301 Sum_probs=25.5
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEE
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCccccc
Confidence 3344444444444443333333334444444444444433222 2233344444444444444433
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.10 E-value=2.6e-10 Score=77.98 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=41.0
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+..+++|+.+++++|.+.+..|..|..+++|++|++++|.+.+..| +.|+++++|++|++++|++++.++
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCSSS
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCccccccc
Confidence 4455666666666666665555555666666666666666665544 345556666666666666555543
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.10 E-value=1.8e-10 Score=76.29 Aligned_cols=74 Identities=28% Similarity=0.312 Sum_probs=62.8
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.++.+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++++..+...
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh-hHhcCcccCCEEECCCCcccccChhhc
Confidence 46778899999999999998878888899999999999999986655 568889999999999999988876543
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=1e-10 Score=76.17 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=54.1
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|++.+..+ ..|..+++|+.|++++|++++.+..
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHH
Confidence 36677888888888888887656667778888888888888876555 4577778888888888887776654
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=4.2e-11 Score=76.63 Aligned_cols=73 Identities=22% Similarity=0.321 Sum_probs=63.2
Q ss_pred ccCCCCCCCEEeccC-ccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 7 VSKGLSKLKSLGLAG-IKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~-n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
.++.+++|+.+++++ |.+.+.+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..+..
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCCCCCEEeCCCCccCCcCChH
Confidence 567889999999995 88888889899999999999999999998888 46888999999999999998766653
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=2.4e-10 Score=68.72 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=64.6
Q ss_pred ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCc-CCCcC
Q 034501 3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNE-IDNLV 77 (92)
Q Consensus 3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~-l~~~~ 77 (92)
..++.+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|+ ++..+
T Consensus 79 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 79 TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCG
T ss_pred CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccH
Confidence 345678889999999999999998778889999999999999999997666 468899999999999998 77765
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.07 E-value=6.8e-10 Score=69.83 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=37.3
Q ss_pred cCCCCCCCEEeccCcc-CCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIK-LNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~-l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+..+++|+.+++++|. +....+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.++.
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh
Confidence 3444555555555554 444434445555555555555555554433 2355555666666666655555443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=3.2e-10 Score=75.54 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=52.0
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+ ..+..+++|++|++++|++++.++.
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~ 165 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSY 165 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCEECTT
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-hhhcccCCCCEEECCCCCcceeCHh
Confidence 45667777777777777777666677777777777777777775544 4577777778888877777766654
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=1.2e-09 Score=69.41 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=63.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+ ..|..+++|+.|++++|+++.++..
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccChh
Confidence 47789999999999999998767678899999999999999996555 5678899999999999999988765
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.05 E-value=3.6e-10 Score=77.26 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=42.1
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
.++.+++|+++++++|.+.+..|..|..+++|+.|++++|.+.+..| ..++++++|++|++++|++++..
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCCSCGG
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCcccCC
Confidence 34556666666666666666555566666666666666666665544 34555666666666666655543
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.05 E-value=6.8e-10 Score=76.33 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=45.9
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+ ..|+++++|++|++++|.+++.++.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCChh
Confidence 34566666667777666666555556666667777777666664433 3456666677777777766666554
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.05 E-value=5.6e-10 Score=74.12 Aligned_cols=72 Identities=21% Similarity=0.206 Sum_probs=55.9
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+ ..|..+++|+.|++++|+++..++.
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~ 154 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIESIPSY 154 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCEECTT
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-hHhhccccCceeeCCCCcccccCHH
Confidence 46677888888888888887767778888888888888888886544 4577788888888888888777664
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.05 E-value=8.5e-10 Score=72.08 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=45.2
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+ ..+.++++|++|++++|++++.++.
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChh
Confidence 34556666666666666666555556666666777776666664333 3356666667777766666666554
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=5.6e-10 Score=69.92 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=33.8
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++.+.+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 116 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLE 116 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCST
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccC
Confidence 3445555555555555554434444555555555555555554333 23444444555555444444443
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.04 E-value=5e-10 Score=72.39 Aligned_cols=70 Identities=21% Similarity=0.180 Sum_probs=51.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++++..+ ..+.++++|++|++++|++++.+.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSSCS
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCcccCc
Confidence 5667778888888887777666667777788888888887775433 447777788888888887777665
No 58
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=7.1e-10 Score=76.33 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=63.7
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCcc-ChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTF-DVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~-~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.+++|+.|++++|.+++ +| .+..+++|+.|++++|++++.. | ..++.+++|+.|++++|++++.++.
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccH
Confidence 57789999999999999998 46 8999999999999999999886 6 4699999999999999999998775
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.03 E-value=6.2e-10 Score=74.33 Aligned_cols=72 Identities=25% Similarity=0.192 Sum_probs=43.4
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+ ..|.++++|++|++++|++.+..+.
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 122 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILLDY 122 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT-TSSTTCTTCCEEECTTSCCCEECTT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc-ccccCCCCCCEEECCCCccccCChh
Confidence 34556666666666666666555566666666666666666664433 3455566666666666666555443
No 60
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=5.5e-10 Score=64.24 Aligned_cols=68 Identities=25% Similarity=0.378 Sum_probs=55.4
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
.+..+++|+.+++++|.+.+. ..+..+++|+.+++++|.+.+..| ..+..+++|+++++++|++++.+
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~ls~N~i~~~~ 104 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLTHLNLSGNKIKDLS 104 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCCEEECTTSCCCSHH
T ss_pred HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCCEEECCCCcCCChH
Confidence 346788899999999988875 567888899999999999987665 35666889999999999988853
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.03 E-value=8.9e-10 Score=71.00 Aligned_cols=70 Identities=21% Similarity=0.139 Sum_probs=42.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.+++|+.|++++|.+.+ +|+.+..+++|+.|++++|.+.+..| ..++.+++|+.|++++|++.+..+.
T Consensus 202 l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 202 IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcch
Confidence 4455666666666666664 34456666666666666666666655 3466666666666666666555554
No 62
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=1.3e-09 Score=70.16 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=60.0
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.++.+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+ ..+..++ |+.|++++|.+...
T Consensus 51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCC
T ss_pred HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCC
Confidence 47789999999999999999888889999999999999999997665 4566555 99999999999864
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.00 E-value=8.4e-10 Score=75.43 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=51.8
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.++.+++|+.+++++|.+.+..|..+..+++|+.+++++|++.+..| ..+..+++|+++++++|+++..+..
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEESC
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCHh
Confidence 35566777777777777777666667777777777777777776655 3577777777777777777766554
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.00 E-value=4.4e-10 Score=75.66 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
++++.+++++|.+.+..|..+..+++|+.|++++|++++..| ..|.++++|++|++++|++++.+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSSCCCEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCCceeecC
Confidence 345555555555554444445555555555555555554433 23444555555555555554443
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=3.3e-10 Score=67.03 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=51.8
Q ss_pred cccCCCC-CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 6 VVSKGLS-KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 6 ~~l~~l~-~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+.+..+. +|+.+++++|.+++. ..+..+++|+.+++++|.+++..+ ..+..+++|++|++++|+++..+.
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCCEEECCSCCCCCGGG
T ss_pred HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCCCCCEEECCCCcCCcchh
Confidence 3344444 788888888888864 467778888888888888886544 345778888888888888877654
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.00 E-value=6.7e-10 Score=70.40 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=29.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCC-ccChhhccCCCCCCEEeccCCcCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG-TFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~-~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+ ..| ..+..+++|++|++++|++++.
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEE
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECCCCCcCCc
Confidence 3344444555555444444333344444444444444444443 122 2234444444444444444443
No 67
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=6.3e-10 Score=76.50 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=65.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK 85 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~ 85 (92)
.++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++.+....+.++
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 195 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCCGGGCTTCS
T ss_pred HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcChhhhhhhh
Confidence 46789999999999999997655557899999999999999998776 4688999999999999999987655444443
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.99 E-value=9.3e-10 Score=70.48 Aligned_cols=73 Identities=22% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK 85 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~ 85 (92)
+.++.+++++|.+.+..+..+..+++|+.+++++|.+.+..| ..+..+++|++|++++|+++..+......++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 124 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCSBCCSSCCTTCC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEECCCCcCCccChhhccccc
Confidence 567888888888887666677888888888888888887656 4577788888888888888776655444443
No 69
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.99 E-value=4.1e-10 Score=65.95 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=54.9
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
+..+++|+.|++++|.+.+. ..+..+++|+.+++++|.+.+..| ..+..+++|++|++++|++++.+
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 111 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHLNLSGNKLKDIS 111 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEEECBSSSCCSSG
T ss_pred HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEEeccCCccCcch
Confidence 46678888899998888875 567788899999999999987666 35666899999999999998865
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=1.3e-09 Score=75.41 Aligned_cols=71 Identities=21% Similarity=0.193 Sum_probs=42.1
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.+++|+.+++++|.+.+..|..+..+++|+.|++++|.++...+ ..|.++++|++|++++|++++.++.
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-hhhccCCCCCEEECCCCccCccChh
Confidence 4455666666666666666555556666666666666666664333 3455566666666666666555543
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.99 E-value=1.1e-09 Score=74.12 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=40.0
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+..+++|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+ ..|.++++|++|++++|++++.++
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~ 117 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLEN 117 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTT
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-hhhcCccccccccccccccccCCC
Confidence 4556666666666666665545555666666666666666654443 345555555555555555555443
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.99 E-value=6.8e-10 Score=75.64 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=32.8
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
++++.+++++|.+.+..+..+..+++|+.|++++|++++..| +.|.++++|++|++++|+++..+.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEECS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCccCc
Confidence 345555555555554444445555555555555555554433 234445555555555555544433
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.98 E-value=1.1e-09 Score=73.99 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=48.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+..+++|+++++++|++.+..|..+..+++|++|++++|.+.+..+ ..++++++|++|++++|++++.
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~ 113 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTL 113 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSS
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCccccc
Confidence 35667777777777777776666667777777777777777776554 3467777777777777777653
No 74
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.97 E-value=1.1e-09 Score=71.60 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=63.5
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcchh
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLK 85 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~ 85 (92)
.++.+++|+.+++++|.+....+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++.+....+.++
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~ 189 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccccccccc
Confidence 46788999999999999996544446889999999999999997666 4688899999999999999887654444443
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=73.28 Aligned_cols=72 Identities=24% Similarity=0.199 Sum_probs=53.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
+..+++|+.|++++|.+.+..+..+..+++|+.+++++|++.+..+ ..|..+++|+.|++++|++++.++..
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeCHhH
Confidence 5567777778888777776666667777778888888887776655 46777888888888888888776653
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.96 E-value=8.1e-10 Score=74.79 Aligned_cols=68 Identities=25% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCCCCCEEeccCccCC-CCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 10 GLSKLKSLGLAGIKLN-RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+++|+.+++++|.+. +.+|..+..+++|+.+++++|++++..| ..+..+++|+++++++|++++.++
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCH
Confidence 3444444444444443 2334444444455555555555444433 234445555555555555555444
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.96 E-value=1.4e-09 Score=68.04 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=34.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+..+++|++|++++|++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc-hhcccCCCCCEEECcCCccce
Confidence 4455556666666666555444445555555555555555554333 234445555555555555544
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=1e-09 Score=70.54 Aligned_cols=71 Identities=27% Similarity=0.291 Sum_probs=54.8
Q ss_pred ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
++.+..+++|+.+++++|.+.+. +.+..+++|+.+++++|.+.+..+ ..+..+++|+.+++++|++++.++
T Consensus 258 ~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 258 INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC
Confidence 45567778888888888887764 357778888888888888876655 457788888888888888888766
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.96 E-value=3.7e-09 Score=67.71 Aligned_cols=72 Identities=26% Similarity=0.300 Sum_probs=56.2
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
.+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+. .+| ..+..+++|+++++++|++++.++..
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp-~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC-TTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC-hhhccCCCcCEEECCCCcCCccChhh
Confidence 5667788888888888888766667788888888888888888 444 25777888888888888888876653
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.96 E-value=8.7e-10 Score=70.37 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=34.3
Q ss_pred CCCCCCCEEeccCccCCCC--Ch-hhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 9 KGLSKLKSLGLAGIKLNRS--IL-SSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~--~~-~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+.+++|+.+++++|.+.+. .+ ..+..+++|+.|++++|++.+..|...+..+++|++|++++|+++.++.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh
Confidence 4455555555555555521 11 1223445555555555555554432234445555666666665554443
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.95 E-value=2.8e-09 Score=68.38 Aligned_cols=72 Identities=28% Similarity=0.312 Sum_probs=60.9
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
.+..+++|+.+++++|.+.+..+..+..+++|+.+++++|++. .+|. .+..+++|+.+++++|++++.++..
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecCh-hhhcCccCCEEECCCCCCCccChhH
Confidence 5677889999999999999877778889999999999999998 4552 5888999999999999998887653
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.95 E-value=9.2e-10 Score=70.63 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=37.5
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.++.+++++|.+.+..+..+..+++|+.+++++|.+.+..+ ..+.++++|++|++++|+++..+..
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYISKNHLVEIPPN 120 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECCCCcCCccCcc
Confidence 355566666666555444455556666666666666554434 3455556666666666655554443
No 83
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=7.1e-10 Score=78.15 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+| ..++++++|++|+|++|.++.+
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP-AELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCC-SSGGGGTTCSEEECCSSCCCCC
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccC-hhhcCCCCCCEEECCCCCCCcc
Confidence 3444444445544444 33444444555555555555544 233 1344444555555555544443
No 84
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.94 E-value=2e-09 Score=74.60 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEec------CCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcc
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHL------RDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ 83 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l------~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~ 83 (92)
.+++|+.|++++|.+.+ +|..+..+++|+.|++ ++|++.+..| ..+..+++|+.|++++|+++.++....+.
T Consensus 511 ~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~ 588 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGSNDIRKVNEKITPN 588 (636)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCSCCCTT
T ss_pred cCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCCCcCCccCHhHhCc
Confidence 77888888888888887 6777888888888888 4566777777 46777888888888888886666544444
Q ss_pred hhh
Q 034501 84 LKC 86 (92)
Q Consensus 84 l~~ 86 (92)
++.
T Consensus 589 L~~ 591 (636)
T 4eco_A 589 ISV 591 (636)
T ss_dssp CCE
T ss_pred CCE
Confidence 443
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=2e-09 Score=68.29 Aligned_cols=66 Identities=26% Similarity=0.340 Sum_probs=32.9
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+.+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+++. + .+..+++|++|++++|++++.
T Consensus 106 ~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCC
T ss_pred hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-h--hhccCCCCCEEEccCCccccc
Confidence 3445555555555555555542 2344555555555555555543 1 244445555555555554444
No 86
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.92 E-value=1.2e-09 Score=74.63 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=31.9
Q ss_pred cCCCCCCCEEeccCccCCCC---ChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRS---ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~---~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
++.+++|+.+++++|.+.+. .+..+..+++|+.+++++|.+.+..| ..+..+++|+.+++++|++++..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCGGGG
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh-hhhccccCCCEEECCCCccCcCCh
Confidence 34445555555555554431 11234444455555555554444333 234444445555555444444433
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.91 E-value=1.3e-09 Score=73.41 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=35.7
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCC--ccChhhccCCCCCCEEeccCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG--TFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~--~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
..+++|+.+++++|.+.+..|..+..+++|+.+++++|++.+ ..| ..+..+++|++|++++|++.+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA-EMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH-HHHTTCTTCCEEECCSSCCBC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch-HHHhhCCCCCEEECCCCcCCc
Confidence 455556666666666555555555555555555555555554 122 234555555555555555555
No 88
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.91 E-value=6.8e-10 Score=78.25 Aligned_cols=72 Identities=25% Similarity=0.277 Sum_probs=63.7
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQG 81 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~ 81 (92)
.++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|. .|+.+++|++|+|++|.+++.++...
T Consensus 265 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 265 EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW-EFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS-STTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh-hhhcCCCccEEeCCCCccCCCChHHH
Confidence 4678999999999999999 56989999999999999999998 5563 59999999999999999998877643
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.91 E-value=2.3e-09 Score=74.20 Aligned_cols=70 Identities=27% Similarity=0.315 Sum_probs=41.6
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+.+++|+.+++++|.+.+..+..+..+++|+++++++|.+.+..+ ..|+++++|++|++++|.+++.++.
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCch
Confidence 445666666666666665433346666666666666666665443 3456666666666666666655444
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.90 E-value=3.1e-09 Score=68.27 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=59.2
Q ss_pred ccccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCC
Q 034501 3 DKFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 74 (92)
Q Consensus 3 ~~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~ 74 (92)
..++.+..+++|+.+++++|.+.+..+..+..+++|+.+++++|.+++..| +..+++|+.+++++|.++
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 345567889999999999999998888889999999999999999997655 777999999999999986
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.90 E-value=1.2e-09 Score=67.16 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=42.4
Q ss_pred cCCCCCCCEEeccCcc-CCCCChhhhhcCCCCcEEecCC-CccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 8 SKGLSKLKSLGLAGIK-LNRSILSSLTVFSSLRELHLRD-TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~-l~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
++.+++|+.+++++|. ++...+..+..+++|+.+++++ |.++...+ ..|.++++|+++++++|++++.+
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~lp 121 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKMFP 121 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCSCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCcccc
Confidence 4556666666666665 6554444566666666666666 66664433 34666666666666666666544
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.89 E-value=2.6e-09 Score=67.79 Aligned_cols=66 Identities=24% Similarity=0.271 Sum_probs=36.1
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+.+..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|++|++++|++++.
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~L~~n~i~~~ 127 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S--SLKDLKKLKSLSLEHNGISDI 127 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G--GGTTCTTCCEEECTTSCCCCC
T ss_pred hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h--hhccCCCCCEEECCCCcCCCC
Confidence 344555666666666666665322 55556666666666655542 2 245555555555555555543
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.89 E-value=2e-09 Score=67.52 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=32.3
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +.. ++|+.|++++|++++.
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---~~~-~~L~~L~L~~N~l~~~ 121 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---IPS-ACLSRLFLDNNELRDT 121 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---CCC-SSCCEEECCSSCCSBS
T ss_pred HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---ccc-CcccEEEccCCccCCC
Confidence 34445555555555555554322 5555555555555555554222 222 5555555555555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.88 E-value=3.3e-09 Score=67.74 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=35.5
Q ss_pred cccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 6 VVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 6 ~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+.+..+++|+.+++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|++|++++|++++.
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S--AIAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G--GGTTCTTCCEEECTTSCCCCC
T ss_pred hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h--hhcCCCCCCEEECCCCCCCCc
Confidence 344455666666666666654322 55555666666666555542 2 245555555555555555544
No 95
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.88 E-value=3.9e-09 Score=71.33 Aligned_cols=72 Identities=22% Similarity=0.231 Sum_probs=58.6
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCc-cChhhccCCCCCCEEeccCCc-CCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGT-FDVREFDSFNNLEVLDLSWNE-IDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~-~~~~~~~~~~~L~~l~ls~N~-l~~~~~~ 79 (92)
.++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+ ..++++++|++|++++|+ +...++.
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCCccEEECCCCccccccCHh
Confidence 467889999999999999988777799999999999999999863 33 357888899999998887 4444433
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.88 E-value=8.6e-10 Score=70.41 Aligned_cols=65 Identities=20% Similarity=0.121 Sum_probs=41.9
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcC-----CCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVF-----SSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~-----~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
..+++|+.+++++|.+.+. |..+..+ ++|++|++++|++.+..+ ..++.+++|++|++++|++.+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCc
Confidence 5566667777777766665 5555544 667777777777665554 356667777777777776544
No 97
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=4.6e-09 Score=75.54 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=55.5
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCC------CccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcc
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD------TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQ 83 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~------n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~ 83 (92)
.+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+..| ..+.++++|+.|++++|++..++....+.
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip-~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~ 828 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP-TGITTCPSLIQLQIGSNDIRKVDEKLTPQ 828 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC-TTGGGCSSCCEEECCSSCCCBCCSCCCSS
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh-HHHhcCCCCCEEECCCCCCCccCHhhcCC
Confidence 67788888888888887 577777888888888865 66676777 45777888888888888886665554445
Q ss_pred hhhH
Q 034501 84 LKCY 87 (92)
Q Consensus 84 l~~~ 87 (92)
|+.+
T Consensus 829 L~~L 832 (876)
T 4ecn_A 829 LYIL 832 (876)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 5443
No 98
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.87 E-value=5.3e-09 Score=67.57 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=57.8
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCC-cCCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN-EIDNLVVP 79 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N-~l~~~~~~ 79 (92)
.++.+++|+.+++++|.+.+..+..+..+++|+.+++++|++....+...+..+++|+++++++| .+++.++.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 46788999999999999997655558889999999999999985433135778889999999888 46666554
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=4.1e-09 Score=73.12 Aligned_cols=65 Identities=26% Similarity=0.350 Sum_probs=29.1
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+.+. + .+..+++|+.|+|++|++.+.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G--GGGSCTTCSEEECCSSCCCCC
T ss_pred hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-h--hhcccCCCCEEECcCCcCCCc
Confidence 344445555555555555432 2344444444444444444432 1 244444444444444444443
No 100
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.86 E-value=2.7e-09 Score=74.02 Aligned_cols=67 Identities=10% Similarity=0.203 Sum_probs=47.7
Q ss_pred cCCCCCCCEEeccCccCCCC-----------------Chhhhh--cCCCCcEEecCCCccCCccChhhccCCCCCCEEec
Q 034501 8 SKGLSKLKSLGLAGIKLNRS-----------------ILSSLT--VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~-----------------~~~~~~--~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~l 68 (92)
++.+++|+.|++++|.+++. +|..+. .+++|++|++++|.+.+..| ..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEEC
Confidence 55677777777777777764 666666 77777777777777777766 35777777777777
Q ss_pred cCCc-CCC
Q 034501 69 SWNE-IDN 75 (92)
Q Consensus 69 s~N~-l~~ 75 (92)
++|+ +++
T Consensus 281 s~n~~l~~ 288 (636)
T 4eco_A 281 ACNRGISG 288 (636)
T ss_dssp TTCTTSCH
T ss_pred cCCCCCcc
Confidence 7776 665
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=6e-09 Score=65.32 Aligned_cols=63 Identities=25% Similarity=0.426 Sum_probs=29.3
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+..+++|+.+++++|++.+. +. +.. ++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 81 l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G--GGTTCTTCCEEECTTSCCCBC
T ss_pred hccCCCCCEEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h--hhcCcccccEEECCCCcCCCC
Confidence 44445555555555555442 11 111 4555555555555532 1 244455555555555555444
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.85 E-value=2.9e-09 Score=72.55 Aligned_cols=67 Identities=22% Similarity=0.355 Sum_probs=34.7
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccC-hhhccCCCCCCEEeccCCcCCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFD-VREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~-~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
+.+++|+.+++++|.+.+..|..+..+++|+.+++++|++++..+ ...+..+++|+.|++++|++++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 445555555555555555555555555555555555555554211 0124445555555555555554
No 103
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.85 E-value=1.6e-08 Score=64.54 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=6.3
Q ss_pred CCCCCCEEeccCccCC
Q 034501 10 GLSKLKSLGLAGIKLN 25 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~ 25 (92)
.+++|+.|++++|.+.
T Consensus 105 ~l~~L~~L~l~~n~l~ 120 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQIT 120 (308)
T ss_dssp TCTTCCEEECTTSCCC
T ss_pred CCCCCCEEECCCCCCC
Confidence 3333444444444333
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.84 E-value=4.8e-09 Score=74.64 Aligned_cols=72 Identities=26% Similarity=0.262 Sum_probs=52.0
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh-hhccCCCCCCEEeccCCcCCCcCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV-REFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. ..+.++++|++|++++|.+++..+
T Consensus 68 ~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc
Confidence 466777888888888888777777777788888888888877765442 226677777777777777776544
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.83 E-value=2.3e-09 Score=65.89 Aligned_cols=78 Identities=17% Similarity=0.107 Sum_probs=47.7
Q ss_pred cCCCCCCC-EEeccCccCCCCChhhhhcCCCCcEEecCCCc-cCCccChhhccCC-CCCCEEeccCCcCCCcCCCCCcch
Q 034501 8 SKGLSKLK-SLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSF-NNLEVLDLSWNEIDNLVVPQGKQL 84 (92)
Q Consensus 8 l~~l~~L~-~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~-~~L~~l~ls~N~l~~~~~~~~~~l 84 (92)
+..+++|+ .+++++|.++.. |......++|+.+++++|+ ++...+ ..|..+ ++|+.+++++|++++.++.....+
T Consensus 151 ~~~l~~L~~~L~l~~n~l~~i-~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L 228 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFTSV-QGYAFNGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228 (239)
T ss_dssp TTTTBSSEEEEECCSCCCCEE-CTTTTTTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred ccchhcceeEEEcCCCCCccc-CHhhcCCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccCChhHhccC
Confidence 45566666 777777776633 3332222667777777774 664333 456667 777777777777777766655555
Q ss_pred hhH
Q 034501 85 KCY 87 (92)
Q Consensus 85 ~~~ 87 (92)
+.+
T Consensus 229 ~~L 231 (239)
T 2xwt_C 229 KEL 231 (239)
T ss_dssp SEE
T ss_pred cee
Confidence 433
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.83 E-value=2.3e-09 Score=68.35 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=36.4
Q ss_pred CCCCCCEEeccCccCCCCChh----hhhcCCCCcEEecCCCccCCccChhhccCC---CCCCEEeccCCcCCCcCCCCCc
Q 034501 10 GLSKLKSLGLAGIKLNRSILS----SLTVFSSLRELHLRDTGFKGTFDVREFDSF---NNLEVLDLSWNEIDNLVVPQGK 82 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~----~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~---~~L~~l~ls~N~l~~~~~~~~~ 82 (92)
.+++|+.|++++|.++.. +. -+..+++|+.|++++|++.+..|. .+..+ ++|++|++++|+++..+.....
T Consensus 195 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp SSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred cCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 444555555555554421 11 134556666666666666655441 23333 4566666666666655443333
Q ss_pred chh
Q 034501 83 QLK 85 (92)
Q Consensus 83 ~l~ 85 (92)
.++
T Consensus 273 ~L~ 275 (310)
T 4glp_A 273 KLR 275 (310)
T ss_dssp CCS
T ss_pred CCC
Confidence 333
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.83 E-value=6.1e-09 Score=72.26 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=44.1
Q ss_pred cccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 4 KFVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 4 ~~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.++.+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|++.+.
T Consensus 57 ~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~--~l~~l~~L~~L~Ls~N~l~~l 124 (605)
T 1m9s_A 57 SVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S--SLKDLKKLKSLSLEHNGISDI 124 (605)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T--TSTTCTTCCEEECTTSCCCCC
T ss_pred CChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h--hhccCCCCCEEEecCCCCCCC
Confidence 34456667777777777777776433 66677777777777776642 2 356666666666666666654
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.80 E-value=8.4e-09 Score=73.42 Aligned_cols=71 Identities=23% Similarity=0.233 Sum_probs=46.5
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+.++.
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS-CSCSSCTTCCEEECCSCCCCCCCSS
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH-HHhcCCCCCCEEECCCCCCCccChh
Confidence 4556667777777777766656666666777777777777665544 3566666677777777766666554
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=1.9e-09 Score=72.79 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=18.3
Q ss_pred CCCCCCEEeccCccCCCCChhhhh-cCCCCcEEecCCCccC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLT-VFSSLRELHLRDTGFK 49 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~~L~~l~l~~n~l~ 49 (92)
.+++|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 344555555555555544444433 3444444444444444
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.78 E-value=3.2e-09 Score=71.67 Aligned_cols=69 Identities=22% Similarity=0.079 Sum_probs=54.4
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhcc-CCCCCCEEeccCCcCCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFD-SFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~-~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|. .+. .+++|++|++++|.+++.++.
T Consensus 118 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l~~L~~L~Ls~N~l~~~~~~ 187 (487)
T 3oja_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA-ELAASSDTLEHLNLQYNFIYDVKGQ 187 (487)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG-GGGGGTTTCCEEECTTSCCCEEECC
T ss_pred ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH-HHhhhCCcccEEecCCCcccccccc
Confidence 467788888888888887777888899999999999999987664 443 678888888888887776543
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.75 E-value=2.2e-08 Score=67.24 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=28.9
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
++.+++|+.+++++|.+++. | +..+++|+++++++|.+++. + ++++++|++|++++|++++.
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~L~~L~L~~N~l~~l 121 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTKLTYLNCDTNKLTKL 121 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTTCCEEECCSSCCSCC
T ss_pred hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCcCCEEECCCCcCCee
Confidence 34444555555555554442 1 44444455555555544432 1 34444455555555544443
No 112
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=3.1e-08 Score=62.75 Aligned_cols=68 Identities=24% Similarity=0.279 Sum_probs=55.1
Q ss_pred CCCCCCEEeccCccCCCC--ChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 10 GLSKLKSLGLAGIKLNRS--ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~--~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+++|+.|++++|++.+. ++..+..+++|+.|++++|++++......+..+ +|+.|++++|.+.+..+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccC
Confidence 578999999999999983 456677899999999999999976332334444 89999999999987443
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.74 E-value=5.3e-09 Score=66.85 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=31.6
Q ss_pred CCCCCCEEeccCccCCCCChhhhh-cCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLT-VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+++|+.+++++|.+.+..+..+. .+++|+.+++++|.+++..+ ...+++|++|++++|++++.++
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECG
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchh
Confidence 344455555555555544333332 34555555555555553321 2235555555555555555443
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.74 E-value=3.7e-08 Score=65.79 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=48.7
Q ss_pred ccccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 5 FVVSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 5 ~~~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
++.+..+++|+.+++++|.+.+..+ +..+++|+.+++++|.+.+..+ +.++++|++|++++|++++.++
T Consensus 61 l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~ 129 (466)
T 1o6v_A 61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP 129 (466)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG
T ss_pred CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH
Confidence 4445667778888888888776533 7777778888887777775433 6677777777777777776654
No 115
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=1.1e-08 Score=73.49 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=41.9
Q ss_pred cCCCCCCCEEeccCccCCC-----------------CChhhhh--cCCCCcEEecCCCccCCccChhhccCCCCCCEEec
Q 034501 8 SKGLSKLKSLGLAGIKLNR-----------------SILSSLT--VFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDL 68 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~-----------------~~~~~~~--~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~l 68 (92)
++.+++|+.|++++|.+++ .+|..+. .+++|+.|++++|.+.+..| ..++++++|+.|++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence 5556666666666666666 2555544 66666666666666666666 34666666666666
Q ss_pred cCCc-CCC
Q 034501 69 SWNE-IDN 75 (92)
Q Consensus 69 s~N~-l~~ 75 (92)
++|+ +++
T Consensus 523 s~N~~lsg 530 (876)
T 4ecn_A 523 ACNRGISA 530 (876)
T ss_dssp TTCTTSCH
T ss_pred cCCCCccc
Confidence 6665 554
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.72 E-value=3.5e-08 Score=66.25 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=39.8
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcch
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQL 84 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l 84 (92)
++.+++|+.+++++|.+++. .+..+++|+.+++++|++++ +| +..+++|+.+++++|++++.++...+.+
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 33444555555555555543 24555666666666666665 33 5556667777777777766655444433
No 117
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.69 E-value=4.6e-08 Score=62.49 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=30.6
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCC
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 74 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~ 74 (92)
+++|+.+++++|.+.+. |+.+..+++|+.+++++|++.. +| ..+..+++|+.+++++|.+.
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~-~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IE-KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-EC-TTCCCCTTCCEEECTTCCCB
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hh-hHhhcCCCCCEEEccCCCcc
Confidence 45555555555555543 2235555555555555555553 23 13444555555555555554
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.69 E-value=6.7e-08 Score=64.57 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 9 KGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 9 ~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+.+++|+.+++++|.+.+..| +..+++|+.+++++|.+.+. + .+..+++|+.+++++|++++..+
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-S--SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-h--hhccCCCCCEEeCCCCccCccch
Confidence 344445555555555444322 44455555555555555443 1 24455555555555555555443
No 119
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.68 E-value=1.2e-08 Score=64.95 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=6.8
Q ss_pred CCCCEEeccCCcCCCc
Q 034501 61 NNLEVLDLSWNEIDNL 76 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~ 76 (92)
++|++|++++|++++.
T Consensus 224 ~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 224 VQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCCSSEECTTSCCCCC
T ss_pred CCCCEEECCCCCCCcc
Confidence 4444444444444443
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.56 E-value=6.1e-08 Score=62.75 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=33.7
Q ss_pred CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccCh-------------------------hhccCCCCCCEEe
Q 034501 13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDV-------------------------REFDSFNNLEVLD 67 (92)
Q Consensus 13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~-------------------------~~~~~~~~L~~l~ 67 (92)
+++.|++++|+++...+..|..+++|+.|++++|++.+.++. +.|..+++|++++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 455555555555543233345555555555555554433332 3345555566666
Q ss_pred ccCCcCCCcCCC
Q 034501 68 LSWNEIDNLVVP 79 (92)
Q Consensus 68 ls~N~l~~~~~~ 79 (92)
+++|+++..++.
T Consensus 111 l~~n~l~~~~~~ 122 (350)
T 4ay9_X 111 ISNTGIKHLPDV 122 (350)
T ss_dssp EEEECCSSCCCC
T ss_pred ccccccccCCch
Confidence 666665555443
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.55 E-value=2.2e-09 Score=64.51 Aligned_cols=65 Identities=29% Similarity=0.305 Sum_probs=38.6
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
+..+++|+.+++++|.+.+ +| .+..+++|+.+++++|.+.. +| ..+..+++|+.|++++|++++.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~-~~~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IE-NLDAVADTLEELWISYNQIASL 108 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CS-SHHHHHHHCSEEEEEEEECCCH
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-cc-chhhcCCcCCEEECcCCcCCcC
Confidence 4456666777777776665 34 56666666666666666663 33 1344445566666666665554
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.46 E-value=3.2e-07 Score=63.42 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=23.1
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCC
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
+++|+.|++++|.+++ +|. +.. +|+.|++++|.+++ +|. .+++|+.|++++|++++
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM 154 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc
Confidence 3444444444444443 232 221 44444444444443 221 23444444444444444
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.46 E-value=1.4e-07 Score=60.17 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=31.4
Q ss_pred CCCCCCEEeccCccCCCC-ChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCC
Q 034501 10 GLSKLKSLGLAGIKLNRS-ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
.+++|+.+++++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCC
Confidence 345555555555555443 34444555555555555555554333 23444555555555555
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.45 E-value=7.1e-07 Score=59.85 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=33.3
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
.++.+++|+.+++++|.+++ +|.. ..+|+.+++++|++.+ .| .++++++|+++++++|++++.+
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCC
Confidence 34445555555555555553 2221 1355555555555554 23 2556666666666666666543
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.43 E-value=9.5e-08 Score=60.99 Aligned_cols=67 Identities=31% Similarity=0.522 Sum_probs=44.9
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCC-ccCCc-cChhhccCCCCCCEEeccCC-cCCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDT-GFKGT-FDVREFDSFNNLEVLDLSWN-EIDN 75 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n-~l~~~-~~~~~~~~~~~L~~l~ls~N-~l~~ 75 (92)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+++. .+ ..+..+++|++|++++| .+++
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcCh
Confidence 456777777777777777666666777777777777777 45542 22 23556777777777777 6654
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.40 E-value=1.6e-07 Score=61.29 Aligned_cols=68 Identities=26% Similarity=0.289 Sum_probs=33.3
Q ss_pred ccCCCCCCCEEeccCccCC----CCChhhhhcCCCCcEEecCCCccCCc----cChhhc--cCCCCCCEEeccCCcCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLN----RSILSSLTVFSSLRELHLRDTGFKGT----FDVREF--DSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~----~~~~~~~~~~~~L~~l~l~~n~l~~~----~~~~~~--~~~~~L~~l~ls~N~l~~ 75 (92)
.+..+++|+.|++++|.+. ..+|..+..+++|+.|++++|.+++. ++ ..+ +.+++|++|++++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH-HHHHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH-HHHhhccCCCeEEEECcCCcCCH
Confidence 3445555555565555553 23344455555555555555555433 11 122 224555555555555544
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.39 E-value=1.4e-07 Score=61.03 Aligned_cols=73 Identities=22% Similarity=0.142 Sum_probs=56.0
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCC-CccCCccChhhccCCCCCCEEeccCCcCCCcCCCCCcchhh
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRD-TGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQGKQLKC 86 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~-n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~~~~l~~ 86 (92)
..++.+++++|.++.. +.......+++.+++.+ |.++ .+|.+.|..+++|+.||+++|+++..++.....++.
T Consensus 154 ~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~ 227 (350)
T 4ay9_X 154 FESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227 (350)
T ss_dssp SSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCE
T ss_pred hhhhhhccccccccCC-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchH
Confidence 4578899999999864 44555567889999975 5555 555567899999999999999999998875555443
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.39 E-value=1.1e-07 Score=61.69 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=32.8
Q ss_pred CCC-CCCEEeccCccCCCCChhhhhcC-----CCCcEEecCCCccCCccChh---hccCC-CCCCEEeccCCcCCCcC
Q 034501 10 GLS-KLKSLGLAGIKLNRSILSSLTVF-----SSLRELHLRDTGFKGTFDVR---EFDSF-NNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 10 ~l~-~L~~l~ls~n~l~~~~~~~~~~~-----~~L~~l~l~~n~l~~~~~~~---~~~~~-~~L~~l~ls~N~l~~~~ 77 (92)
.++ +|+.|++++|.+.+..+..+..+ ++|+.|++++|.+++..+.. .+... ++|++|++++|++++..
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 444 55555555555555444444432 55555555555555433210 12222 45555555555554443
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.37 E-value=1.4e-07 Score=61.48 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=37.7
Q ss_pred cCCCCCCCEEeccCccCCCC----Chhhhhc--CCCCcEEecCCCccCC----ccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 8 SKGLSKLKSLGLAGIKLNRS----ILSSLTV--FSSLRELHLRDTGFKG----TFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~--~~~L~~l~l~~n~l~~----~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
+..+++|+.|++++|.+.+. ++..+.. +++|+.|++++|.+++ .++...+.++++|++|++++|++++..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 44556666666666666543 2333322 5666666666666665 233211244566666666666665543
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.36 E-value=3.6e-07 Score=63.68 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=38.6
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+++|+.|++++|.++. +|. .+++|+.|++++|+++ .+| ..+.++++|+.+++++|.+++..+
T Consensus 239 ~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp-~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLP-ESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCC-GGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCC-HHHhhccccCEEEecCCCCCCcCH
Confidence 34556666666666653 232 4566777777777777 344 246667777777777777765443
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.36 E-value=8.1e-07 Score=61.42 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|+++.++.
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcCCCCCchhh
Confidence 3445555555555544 222 34455555555555554 331 22 455555555555554433
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.35 E-value=1.8e-06 Score=57.94 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=35.1
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
.++.+++|+.+++++|.+.+. |.. .++|+.+++++|.+. .+| .++.+++|+++++++|++++.+
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSSCC
T ss_pred cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCccc
Confidence 445555566666666655541 211 135555555555555 334 2556666677777666666644
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.34 E-value=2.8e-07 Score=59.81 Aligned_cols=69 Identities=19% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCCCCCEEeccCccCCCCCh----hhhhcCC-CCcEEecCCCccCCccChhhccCC-----CCCCEEeccCCcCCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRSIL----SSLTVFS-SLRELHLRDTGFKGTFDVREFDSF-----NNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~----~~~~~~~-~L~~l~l~~n~l~~~~~~~~~~~~-----~~L~~l~ls~N~l~~~~~~ 79 (92)
..++|+.+++++|.+.+..+ ..+..++ +|+.|++++|.+.+..+ ..+..+ ++|++|++++|++++..+.
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 34559999999999998766 6777888 89999999999997655 345443 8999999999999876543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.33 E-value=2.8e-08 Score=59.63 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=57.3
Q ss_pred ccCCCCCCCEEeccCccCCCCChh------hhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILS------SLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~------~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+.....++.++++.+.+.+..|. .+..+++|+.+++++|.+.+ +| .+..+++|+.|++++|+++..+.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~ 87 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIEN 87 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSS
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccc
Confidence 344566777778888888877665 89999999999999999997 55 58889999999999999997654
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.15 E-value=2.9e-07 Score=60.93 Aligned_cols=66 Identities=24% Similarity=0.203 Sum_probs=38.3
Q ss_pred CCCCCCEEeccCccCCCCChhhhhc-----CCCCcEEecCCCccCC----ccChhhccCCCCCCEEeccCCcCCCc
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTV-----FSSLRELHLRDTGFKG----TFDVREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~-----~~~L~~l~l~~n~l~~----~~~~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+++|+.+++++|.+.+..+..+.. .++|+.+++++|.+++ .++ ..+..+++|+.+++++|++++.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCCCCCEEECCSSSCCHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH-HHHHhCCCccEEECCCCCCCHH
Confidence 4466666666666665433333322 4566677777666664 333 2355567777777777766543
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.13 E-value=6.6e-06 Score=57.39 Aligned_cols=16 Identities=31% Similarity=0.408 Sum_probs=7.4
Q ss_pred CCCCEEeccCCcCCCc
Q 034501 61 NNLEVLDLSWNEIDNL 76 (92)
Q Consensus 61 ~~L~~l~ls~N~l~~~ 76 (92)
++|++|++++|++++.
T Consensus 141 ~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 141 PGLQELSVSDNQLASL 156 (622)
T ss_dssp TTCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCcCCCc
Confidence 3444444444444443
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.06 E-value=1.8e-06 Score=58.72 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=50.9
Q ss_pred CCCCCCEEeccCccCCCC-ChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 10 GLSKLKSLGLAGIKLNRS-ILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
.+++|+.|++++|.+++. .+..+..+++|+.|++++|.+++......+..+++|+.|++++|+++...
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 377888899988888763 34445678999999999998765433233456889999999999987653
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=7.2e-06 Score=52.53 Aligned_cols=67 Identities=16% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCc-EEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLR-ELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~-~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
++.+|+.++++.| +....+..|..+.+|+ .+++.+ .++. ++..+|.++++|+.++++.|.++.+...
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEEEEECSSCCCEECTT
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCEEEeCCCccCccchh
Confidence 3444444444443 3333333344444444 444444 3332 2223455555555555555555554444
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.98 E-value=1.4e-05 Score=51.17 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCC-EEeccCCcCCCcCCCCCcc
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLE-VLDLSWNEIDNLVVPQGKQ 83 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~-~l~ls~N~l~~~~~~~~~~ 83 (92)
+++|+.+++++|.+....+..|..+.+|+.+++++| +.. ++..+|.++++|+ .+++++ .++.+....+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhC
Confidence 789999999999999777778999999999999998 663 5557899999999 999988 777776665433
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.89 E-value=5.5e-06 Score=54.79 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCCCCCEEeccCccCCCCChhhhh-cCC----CCcEEecCCCccCCc----cChhhccCCCCCCEEeccCCcCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLT-VFS----SLRELHLRDTGFKGT----FDVREFDSFNNLEVLDLSWNEID 74 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~----~L~~l~l~~n~l~~~----~~~~~~~~~~~L~~l~ls~N~l~ 74 (92)
.+++|+.+++++|.+.+..+..+. .++ +|+.|++++|.+... ++ ..+..+++|++|++++|.++
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCc
Confidence 445555555555555432222222 233 455555555555531 12 23455555555555555554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.88 E-value=4.7e-06 Score=54.74 Aligned_cols=66 Identities=26% Similarity=0.348 Sum_probs=29.7
Q ss_pred CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhccCCCCCCEEeccCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~ 75 (92)
..++|+.|++++|.+.+. +...+...++|+.|++++|.+++.... ..+...++|++||+++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 344455555555554431 122233444555555555555432110 112234555555555555543
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.87 E-value=1.3e-06 Score=55.29 Aligned_cols=44 Identities=25% Similarity=0.272 Sum_probs=36.8
Q ss_pred hcCCCCcEEecCCCccCCccCh-hhccCCCCCCEEeccCCcCCCc
Q 034501 33 TVFSSLRELHLRDTGFKGTFDV-REFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 33 ~~~~~L~~l~l~~n~l~~~~~~-~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
..+++|+.|++++|++++..+. ..+..+++|+.|+|++|++++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence 4689999999999999984321 2456799999999999999987
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.73 E-value=1e-05 Score=55.03 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=34.1
Q ss_pred CCCCCEEeccCccCCCCChhhh-hcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcC
Q 034501 11 LSKLKSLGLAGIKLNRSILSSL-TVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEI 73 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~-~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l 73 (92)
+++|+.|++++|.+++.....+ ..+++|+.|++++|.+++.........+++|+.|++++|++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4556666666666554333333 44666666666666664332212233456666666666655
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.71 E-value=2.1e-05 Score=51.62 Aligned_cols=67 Identities=19% Similarity=0.287 Sum_probs=46.6
Q ss_pred CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhccCCCCCCEEeccCCcCCCc
Q 034501 10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
..++|+.|++++|.+... ++..+...++|+.|++++|.+.+... .+.+...++|++|++++|.++..
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 457788888888887642 23334667888888888888775321 12355667888888888888654
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.63 E-value=6.2e-05 Score=44.77 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhccCCCCCCEEec--cCCcCCC
Q 034501 11 LSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDL--SWNEIDN 75 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~l--s~N~l~~ 75 (92)
.++|+.|++++|.+... +...+...++|+.|++++|.+.+... .+.+...+.|++|++ ++|.++.
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 34455555555554431 11222333445555555555543210 012333445555555 4455443
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=4.2e-05 Score=45.51 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=53.1
Q ss_pred ccCCCCCCCEEeccCc-cCCCC----ChhhhhcCCCCcEEecCCCccCCccC---hhhccCCCCCCEEeccCCcCCCc
Q 034501 7 VSKGLSKLKSLGLAGI-KLNRS----ILSSLTVFSSLRELHLRDTGFKGTFD---VREFDSFNNLEVLDLSWNEIDNL 76 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n-~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~---~~~~~~~~~L~~l~ls~N~l~~~ 76 (92)
.+...+.|+.|++++| .+... +...+...++|+.|++++|.+.+... .+.+...+.|++|++++|.++..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 3567889999999999 88753 23345567899999999999985422 12345568899999999999764
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.60 E-value=2.6e-05 Score=53.03 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=41.1
Q ss_pred CCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhccCCCCCCEEeccCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~~ 75 (92)
.+++|+.|++++|.+.+. ++.....+++|+.|++++|.+.+.... ..+.++++|++|++++|.+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 567777777777776554 333445677777777777777622110 224556777777777776554
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.49 E-value=2e-05 Score=53.59 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=38.7
Q ss_pred CCCCCCEEeccCccCCCCChhhhh-cCCCCcEEecCCC-ccCCccChhhccCCCCCCEEeccCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLT-VFSSLRELHLRDT-GFKGTFDVREFDSFNNLEVLDLSWNEIDN 75 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~-~~~~L~~l~l~~n-~l~~~~~~~~~~~~~~L~~l~ls~N~l~~ 75 (92)
.+++|+.++++++.+.+..+..+. .+++|+.|++++| .++.......+.++++|++|++++|.+++
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 456777777777776655444454 5677777777666 33322111223356677777777766544
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.43 E-value=0.00058 Score=38.57 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=31.6
Q ss_pred EEeccCccCC-CCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCC
Q 034501 16 SLGLAGIKLN-RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEID 74 (92)
Q Consensus 16 ~l~ls~n~l~-~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~ 74 (92)
.++-+++.++ ..+|..+ .++++.|++++|+++...+ +.|..+++|+.++|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 4555566554 1223221 2356677777777764433 45666677777777776553
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.38 E-value=0.00012 Score=43.68 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=30.2
Q ss_pred ccCCCCCCCEEeccCcc-CCCCChhhhhcC----CCCcEEecCCCc-cCCccChhhccCCCCCCEEeccCC
Q 034501 7 VSKGLSKLKSLGLAGIK-LNRSILSSLTVF----SSLRELHLRDTG-FKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~-l~~~~~~~~~~~----~~L~~l~l~~n~-l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
.+.++++|+.|+++++. +++..-..+..+ ++|+.|++++|. +++.-- ..+..+++|++|+++++
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCC
Confidence 34455555555555553 443222233332 245566665543 443221 23445566666666554
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.27 E-value=0.00011 Score=48.20 Aligned_cols=64 Identities=13% Similarity=0.304 Sum_probs=28.2
Q ss_pred CCCCCEEeccCccCCCCChhhhh---cCCCCcEEecCCCccCCccCh---hhccCCCCCCEEeccCCcCC
Q 034501 11 LSKLKSLGLAGIKLNRSILSSLT---VFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEID 74 (92)
Q Consensus 11 l~~L~~l~ls~n~l~~~~~~~~~---~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~ 74 (92)
+++|+.|++.+|.+.+..+..+. .+++|+.|+++.|.+.+.... ..+.++++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45555555555554432121121 245555555555555442110 01123455555555555543
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.0014 Score=37.00 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCC
Q 034501 13 KLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKG 50 (92)
Q Consensus 13 ~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 50 (92)
+++.|++++|+++...+..|..+++|+.+++++|.+.-
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 69999999999998767778899999999999998763
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.92 E-value=0.00041 Score=41.40 Aligned_cols=64 Identities=3% Similarity=0.072 Sum_probs=48.2
Q ss_pred CCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCc-cCCccChhhccCC----CCCCEEeccCCc-CCCc
Q 034501 12 SKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTG-FKGTFDVREFDSF----NNLEVLDLSWNE-IDNL 76 (92)
Q Consensus 12 ~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~-l~~~~~~~~~~~~----~~L~~l~ls~N~-l~~~ 76 (92)
..|+.++++++.+...--..+..+++|+.|+++++. +++.-- ..+..+ ++|++|++++|. ++..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 368999999999887656667899999999999985 654322 335543 479999999984 6653
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.77 E-value=0.0037 Score=41.38 Aligned_cols=44 Identities=7% Similarity=0.132 Sum_probs=19.7
Q ss_pred hhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcC
Q 034501 31 SLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLV 77 (92)
Q Consensus 31 ~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~ 77 (92)
.|..|.+|+.+.+..+ ++ .++..+|.++ +|+.++++.|......
T Consensus 318 aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp TTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred hhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 3444444444444332 22 1222345555 5555555555544433
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.66 E-value=0.0051 Score=40.72 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=54.3
Q ss_pred ccCCCCCCCEEeccCccCC-----CCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCCC
Q 034501 7 VSKGLSKLKSLGLAGIKLN-----RSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVPQ 80 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~-----~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~~ 80 (92)
.+..+++|+.+.+.+|.+. ...+..|..|++|+.+.+.. .+. .++...|.++++|+.+++..| ++.+....
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 4668899999999988775 34466789999999999984 466 344467999999999999655 65555443
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.23 E-value=0.01 Score=38.35 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=36.1
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccC
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~ 70 (92)
+.++.+|+.+.+.++.++..-...|..+.+|+.+.+..+ ++ .++..+|.++++|+.+.+..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 345566666666666665544556666777777776543 33 23334566666676666643
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.96 E-value=0.013 Score=38.27 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=24.7
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
.+.+|+.+.+..+ +.......|..+.+|+.+++..+ +. .++..+|.++++|+.+++..|
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc
Confidence 3444555544432 22222334444555555555432 22 122234444555555544433
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.88 E-value=0.031 Score=36.49 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=35.4
Q ss_pred cCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCc
Q 034501 8 SKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNE 72 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~ 72 (92)
+.++.+|+.+.+..+ ++......|..|.+|+.+.+..+ ++ .++..+|.++++|+.+++..+.
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 334556666666543 33333445666777777776543 33 2333567777777777776553
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.68 E-value=0.0098 Score=36.02 Aligned_cols=64 Identities=13% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCCCCEEeccCc-cCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhccCCCCCCEEeccCCcCC
Q 034501 11 LSKLKSLGLAGI-KLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWNEID 74 (92)
Q Consensus 11 l~~L~~l~ls~n-~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N~l~ 74 (92)
-+.|+.|++++| .+... +-..+..=..|+.|++++|++.+.... +.+..-+.|++|+|+.|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445566666653 44421 112233345555666666555532110 11222344555555555554
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.57 E-value=0.029 Score=36.58 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=46.7
Q ss_pred ccCCCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCC
Q 034501 7 VSKGLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWN 71 (92)
Q Consensus 7 ~l~~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N 71 (92)
.+.++.+|+.+.+..+ ++......|..|.+|+.+.+..+ ++ .++..+|.++++|+.++++.+
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 3556788888888654 55555677889999999999876 55 344467999999999998754
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.48 E-value=0.042 Score=35.47 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=40.9
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVVP 79 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~~ 79 (92)
.+.+++.+.+..+ +.......|..+.+|+.+.+..+.++.. +..+|.++.+|+.+++..+ ++.+...
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eeehhcccccccc-ceecccccccccccccccccccccccee-hhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence 3444555554332 2323334567788888888887777633 3357888888888888654 5444443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.86 E-value=0.037 Score=33.46 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=45.2
Q ss_pred cCCCCCCCEEeccCccCCCC----ChhhhhcCCCCcEEecCCCccCCccCh---hhccCCCCCCEEeccCC
Q 034501 8 SKGLSKLKSLGLAGIKLNRS----ILSSLTVFSSLRELHLRDTGFKGTFDV---REFDSFNNLEVLDLSWN 71 (92)
Q Consensus 8 l~~l~~L~~l~ls~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~~~~~~---~~~~~~~~L~~l~ls~N 71 (92)
+..-..|+.|++++|.+... +...+..=+.|+.|++++|++.+.-.. +.+..-+.|+.|++++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 44567899999999998852 233445567899999999999854221 22444567999999865
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.38 E-value=0.093 Score=34.19 Aligned_cols=65 Identities=11% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCCCCEEeccCccCCCCChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccCCcCCCcCC
Q 034501 10 GLSKLKSLGLAGIKLNRSILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSWNEIDNLVV 78 (92)
Q Consensus 10 ~l~~L~~l~ls~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~N~l~~~~~ 78 (92)
.+..|+.+.+. +.+.......|..+.+|+.+.+..+ ++ .+...+|.++.+|+.+.+..+ ++.+..
T Consensus 286 ~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 286 NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 34455555553 2333333455677788888887654 33 233356777888888887644 444433
No 164
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.30 E-value=0.073 Score=34.84 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=7.2
Q ss_pred CCCCCEEeccCCcCCC
Q 034501 60 FNNLEVLDLSWNEIDN 75 (92)
Q Consensus 60 ~~~L~~l~ls~N~l~~ 75 (92)
+++|++|+++.|.+++
T Consensus 278 ~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 278 LPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGCSEEECCSSCCBH
T ss_pred CCCCCEEECCCCCCCh
Confidence 3444444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.73 E-value=5.4 Score=21.07 Aligned_cols=42 Identities=19% Similarity=0.037 Sum_probs=23.3
Q ss_pred CChhhhhcCCCCcEEecCCCccCCccChhhccCCCCCCEEeccC
Q 034501 27 SILSSLTVFSSLRELHLRDTGFKGTFDVREFDSFNNLEVLDLSW 70 (92)
Q Consensus 27 ~~~~~~~~~~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~l~ls~ 70 (92)
+-...|..|.+|+.+.+..+- +. +...+|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~v-~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPNI-GL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTTS-SC-CCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCch-he-EcHHHHhccCCccEEEEcC
Confidence 334456666667666665532 21 2224566677776666643
Done!