BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034507
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LS H+ DE YLGER+ P W+ D + EAF F + NSDPS R
Sbjct: 774 LSVIEILSRHASDEIYLGERETP-NWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLR 832
Query: 61 NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL SSE G+T KG+PNS+SI
Sbjct: 833 NRTGPVQLPYTLLHRSSEEGLTFKGIPNSISI 864
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LS H+ DE YLGER P W+ D EAF F N+D R
Sbjct: 767 LSVIEILSRHASDEVYLGERDNP-NWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLR 825
Query: 61 NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NRCG +PY LL+PSS+ G+T +G+PNS+SI
Sbjct: 826 NRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LS H+ DE YLGER P W+ D EAF F N+D R
Sbjct: 767 LSVIEILSRHASDEVYLGERDNP-NWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLR 825
Query: 61 NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NRCG +PY LL+PSS+ G+T +G+PNS+SI
Sbjct: 826 NRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
++V++ LSTH+ DE YLG+R P W+ D + +AF +F N+DPS +
Sbjct: 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQ 806
Query: 61 -NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G LPY LL PSSE G+T +G+PNS+SI
Sbjct: 807 GNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 51/92 (55%)
Query: 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAXXXXXXXXXXXXNSDPSRR 60
+ +++ LS H+ DE YLG+R W+ D EAF F N+D + R
Sbjct: 762 LTIIEILSRHASDEFYLGQRDGGDYWTSDAGPLEAFKRFGKNLEEIEKKLIEKNNDETLR 821
Query: 61 NRCGAGVLPYELLVPSSEPGVTCKGVPNSVSI 92
NR G +PY LL PSSE G+T +G+PNS+SI
Sbjct: 822 NRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 3 VVDTLSTHSPDEEYLGERQQPWIWS 27
V+D S SPD L ER PWIW+
Sbjct: 535 VLDLFSEVSPDWNRLEERDLPWIWN 559
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With 2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium Perfringens
Length = 891
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 3 VVDTLSTHSPDEEYLGERQQPWIWS 27
V+D S SPD L ER PWIW+
Sbjct: 512 VLDLFSEVSPDWNRLEERDLPWIWN 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,673,093
Number of Sequences: 62578
Number of extensions: 76390
Number of successful extensions: 140
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 18
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)