Query 034507
Match_columns 92
No_of_seqs 106 out of 420
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02264 lipoxygenase 100.0 1.7E-36 3.7E-41 259.8 7.7 91 1-92 828-919 (919)
2 PLN02305 lipoxygenase 100.0 1.1E-35 2.4E-40 254.8 7.9 91 1-92 826-918 (918)
3 PLN02337 lipoxygenase 100.0 8.2E-35 1.8E-39 249.0 7.3 91 1-92 771-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 99.9 6.1E-25 1.3E-29 184.7 5.9 75 1-76 593-667 (667)
5 PF08153 NGP1NT: NGP1NT (NUC09 77.3 0.54 1.2E-05 33.3 -0.7 22 26-47 37-60 (130)
6 PF07870 DUF1657: Protein of u 71.3 9.3 0.0002 22.5 3.7 28 26-53 22-49 (50)
7 PRK10947 global DNA-binding tr 63.6 22 0.00048 25.1 5.0 29 62-90 89-119 (135)
8 PF09989 DUF2229: CoA enzyme a 60.0 14 0.0003 27.5 3.6 50 31-81 155-204 (221)
9 cd02974 AhpF_NTD_N Alkyl hydro 59.5 4.6 0.0001 26.5 0.9 52 31-89 31-83 (94)
10 PF12652 CotJB: CotJB protein; 52.7 38 0.00082 21.8 4.3 30 26-55 25-54 (78)
11 PF02946 GTF2I: GTF2I-like rep 51.9 3.4 7.4E-05 26.8 -0.7 27 64-91 21-47 (76)
12 KOG2423 Nucleolar GTPase [Gene 47.3 7 0.00015 33.3 0.3 39 26-76 79-123 (572)
13 PF07957 DUF3294: Protein of u 40.1 83 0.0018 24.1 5.1 33 20-53 64-96 (216)
14 TIGR02978 phageshock_pspC phag 38.6 56 0.0012 22.6 3.7 28 26-53 76-103 (121)
15 PF05098 LEF-4: Late expressio 36.5 19 0.00042 30.2 1.3 58 8-75 154-211 (450)
16 PF02009 Rifin_STEVOR: Rifin/s 36.4 58 0.0013 25.8 3.9 27 23-50 29-59 (299)
17 PF12108 SF3a60_bindingd: Spli 35.8 50 0.0011 17.5 2.4 15 34-48 7-21 (28)
18 PF04210 MtrG: Tetrahydrometha 34.8 49 0.0011 21.2 2.7 22 34-55 12-33 (70)
19 cd07591 BAR_Rvs161p The Bin/Am 34.5 43 0.00094 25.0 2.8 29 29-57 94-122 (224)
20 PF09045 L27_2: L27_2; InterP 33.5 47 0.001 20.5 2.4 16 30-45 3-18 (58)
21 PF13040 DUF3901: Protein of u 32.9 50 0.0011 18.9 2.2 19 36-54 19-37 (40)
22 cd07599 BAR_Rvs167p The Bin/Am 32.7 64 0.0014 23.4 3.4 29 29-57 95-123 (216)
23 PLN02256 arogenate dehydrogena 32.7 68 0.0015 24.9 3.7 29 28-56 264-292 (304)
24 KOG4158 BRPK/PTEN-induced prot 32.4 1.1E+02 0.0023 26.5 5.0 56 36-91 3-68 (598)
25 PTZ00323 NAD+ synthase; Provis 32.3 42 0.00092 26.3 2.5 23 35-58 266-288 (294)
26 cd01147 HemV-2 Metal binding p 32.2 67 0.0015 22.9 3.4 27 29-55 127-153 (262)
27 TIGR01149 mtrG N5-methyltetrah 31.6 60 0.0013 20.8 2.7 22 34-55 12-33 (70)
28 PRK01026 tetrahydromethanopter 31.4 60 0.0013 21.2 2.7 21 35-55 16-36 (77)
29 PF13747 DUF4164: Domain of un 31.1 1E+02 0.0022 20.0 3.8 28 29-56 3-30 (89)
30 PF06696 Strep_SA_rep: Strepto 30.3 87 0.0019 16.2 3.5 20 33-52 4-23 (25)
31 PF10393 Matrilin_ccoil: Trime 30.2 1.2E+02 0.0026 17.8 3.9 22 31-52 20-41 (47)
32 cd01141 TroA_d Periplasmic bin 30.2 72 0.0016 21.8 3.2 25 28-52 122-146 (186)
33 KOG3408 U1-like Zn-finger-cont 29.8 39 0.00086 24.0 1.8 32 16-47 54-90 (129)
34 PF04423 Rad50_zn_hook: Rad50 29.7 65 0.0014 18.5 2.5 26 26-51 29-54 (54)
35 PF04339 DUF482: Protein of un 29.1 94 0.002 25.2 4.0 34 24-58 333-367 (370)
36 TIGR00444 mazG MazG family pro 28.8 82 0.0018 24.2 3.5 31 28-58 203-233 (248)
37 KOG1144 Translation initiation 27.7 1.1E+02 0.0023 28.3 4.4 52 34-90 626-679 (1064)
38 PF06305 DUF1049: Protein of u 27.0 1.3E+02 0.0027 17.6 3.5 21 32-52 46-66 (68)
39 COG1590 Uncharacterized conser 26.7 89 0.0019 23.8 3.3 49 3-55 137-193 (208)
40 PRK08818 prephenate dehydrogen 26.6 61 0.0013 26.2 2.6 28 27-54 224-251 (370)
41 cd01138 FeuA Periplasmic bindi 26.5 1.2E+02 0.0026 21.6 3.9 26 29-54 113-138 (248)
42 PHA02100 hypothetical protein 26.2 93 0.002 21.3 3.0 44 4-51 65-108 (112)
43 TIGR00541 hisDCase_pyru histid 25.9 1.1E+02 0.0024 24.6 3.8 52 26-77 203-254 (310)
44 cd07590 BAR_Bin3 The Bin/Amphi 25.7 1.1E+02 0.0023 23.2 3.6 27 31-57 95-121 (225)
45 COG3883 Uncharacterized protei 25.4 1E+02 0.0022 24.2 3.5 27 32-58 78-104 (265)
46 PF07972 Flavodoxin_NdrI: NrdI 25.3 11 0.00025 26.0 -1.6 25 66-90 37-61 (122)
47 cd01146 FhuD Fe3+-siderophore 24.5 1.2E+02 0.0026 21.8 3.6 25 29-53 115-139 (256)
48 cd07588 BAR_Amphiphysin The Bi 24.4 1.2E+02 0.0025 22.7 3.6 29 29-57 89-117 (211)
49 PF13002 LDB19: Arrestin_N ter 24.3 55 0.0012 24.5 1.8 16 62-77 48-63 (191)
50 PF03233 Cauli_AT: Aphid trans 23.9 1.4E+02 0.003 22.0 3.8 25 27-51 135-159 (163)
51 PF10078 DUF2316: Uncharacteri 23.9 67 0.0015 21.3 2.0 19 46-74 61-79 (89)
52 COG2916 Hns DNA-binding protei 23.5 2.1E+02 0.0046 20.1 4.5 26 62-87 82-109 (128)
53 PRK01203 prefoldin subunit alp 23.4 75 0.0016 22.4 2.2 33 26-58 79-111 (130)
54 cd07589 BAR_DNMBP The Bin/Amph 23.2 1.1E+02 0.0024 22.2 3.2 29 29-57 87-115 (195)
55 COG0287 TyrA Prephenate dehydr 23.2 1.1E+02 0.0024 23.7 3.3 28 28-55 234-262 (279)
56 cd01143 YvrC Periplasmic bindi 22.7 1.1E+02 0.0024 20.7 3.0 25 29-53 111-135 (195)
57 KOG3233 RNA polymerase III, su 22.7 1.1E+02 0.0024 24.5 3.3 52 6-65 145-196 (297)
58 PRK08507 prephenate dehydrogen 22.6 1.3E+02 0.0027 22.4 3.5 27 28-54 230-257 (275)
59 PF08701 GN3L_Grn1: GNL3L/Grn1 22.5 35 0.00077 22.0 0.4 7 84-90 35-41 (79)
60 COG0813 DeoD Purine-nucleoside 21.7 27 0.00059 27.1 -0.3 39 35-88 29-69 (236)
61 PF09043 Lys-AminoMut_A: D-Lys 21.7 69 0.0015 27.4 2.1 47 26-75 106-153 (509)
62 PLN02712 arogenate dehydrogena 21.6 1.3E+02 0.0028 26.1 3.8 30 27-56 596-625 (667)
63 cd01148 TroA_a Metal binding p 21.4 1.2E+02 0.0025 22.2 3.1 27 29-55 142-168 (284)
64 PF07369 DUF1488: Protein of u 21.2 1.6E+02 0.0035 18.1 3.3 26 28-53 47-72 (83)
65 PF02026 RyR: RyR domain; Int 21.2 1.8E+02 0.0039 19.0 3.6 48 27-74 9-65 (94)
66 KOG0568 Molecular chaperone (D 21.1 1.6E+02 0.0035 23.5 3.9 41 16-58 282-323 (342)
67 PF02153 PDH: Prephenate dehyd 20.9 1.7E+02 0.0036 21.8 3.8 27 28-54 221-248 (258)
68 PF13713 BRX_N: Transcription 20.8 1.6E+02 0.0035 16.6 2.9 22 29-50 7-28 (39)
69 cd01139 TroA_f Periplasmic bin 20.8 1.6E+02 0.0034 22.3 3.7 26 29-54 148-173 (342)
70 TIGR01478 STEVOR variant surfa 20.6 1.8E+02 0.0039 23.3 4.1 18 23-41 52-69 (295)
71 COG4064 MtrG Tetrahydromethano 20.6 1.3E+02 0.0027 19.5 2.7 21 35-55 16-36 (75)
72 KOG0151 Predicted splicing reg 20.4 98 0.0021 28.1 2.8 25 34-58 112-136 (877)
73 cd07662 BAR_SNX6 The Bin/Amphi 20.0 75 0.0016 24.3 1.8 39 10-50 8-46 (218)
No 1
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.7e-36 Score=259.83 Aligned_cols=91 Identities=89% Similarity=1.421 Sum_probs=88.5
Q ss_pred CchhhccCCCCCCccCcccccCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQP-WIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEP 79 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~-~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~ 79 (92)
|+++++||+|++||+||||+..+ + ||+|+++++||++|+++|++||++|++||+++++|||+||+++||+||+|+++|
T Consensus 828 ms~~~iLS~hs~dE~yLG~~~~~~~-w~~D~~~~~af~rF~~~L~eIe~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~ 906 (919)
T PLN02264 828 MAVVDTLSTHSPDEEYIGERQQPSI-WTGDAEIVEAFYGFSAEIGRIEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEP 906 (919)
T ss_pred HHHHHHHhhcCCCceeccCCCCccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCCCCceeeCCCCCC
Confidence 68999999999999999998765 6 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccccccC
Q 034507 80 GVTCKGVPNSVSI 92 (92)
Q Consensus 80 g~t~~gIPnSIsI 92 (92)
|||||||||||||
T Consensus 907 G~T~~gIPNSISI 919 (919)
T PLN02264 907 GVTCRGVPNSVSI 919 (919)
T ss_pred CCCcCCCCCcccC
Confidence 9999999999998
No 2
>PLN02305 lipoxygenase
Probab=100.00 E-value=1.1e-35 Score=254.80 Aligned_cols=91 Identities=59% Similarity=0.943 Sum_probs=88.6
Q ss_pred CchhhccCCCCCCccCcccccCC--CCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQP--WIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSE 78 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~--~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~ 78 (92)
|+++++||+|++||+||||+.++ . ||+|+++++||++|+++|++||++|++||+++++|||+||+++||+||+|+++
T Consensus 826 mav~~iLS~hs~de~yLG~~~~~~~~-w~~D~~~~~A~~rF~~~L~eIE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~ 904 (918)
T PLN02305 826 MAVQDTLSTHSPDEEYLGELRHLHSH-WINDHEVVKLFNKFSARLEEIEKTINERNKDIRLKNRNGAGIPPYELLLPTSG 904 (918)
T ss_pred HHHHHHhccCCCCcccccCCCCcccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCCCC
Confidence 67899999999999999999875 6 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCccccccC
Q 034507 79 PGVTCKGVPNSVSI 92 (92)
Q Consensus 79 ~g~t~~gIPnSIsI 92 (92)
+|||||||||||||
T Consensus 905 ~G~T~rgIPNSISI 918 (918)
T PLN02305 905 PGVTGRGIPNSISI 918 (918)
T ss_pred CCCCcCCCCCcccC
Confidence 99999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=8.2e-35 Score=248.96 Aligned_cols=91 Identities=47% Similarity=0.798 Sum_probs=88.7
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCC---
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSS--- 77 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~--- 77 (92)
|+++++||+|++||+|||++++++ ||+|+++++||++|+++|++||++|++||+++.+|||+||+++||+||+|++
T Consensus 771 ~~l~~lLS~~s~de~yLG~~~~~~-w~~d~~~~~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~ 849 (866)
T PLN02337 771 ISLIEILSRHSSDEVYLGQRDTPE-WTSDAEPLEAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDY 849 (866)
T ss_pred HHHHHHhccCCCCceeccCcCCcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccc
Confidence 678999999999999999998768 9999999999999999999999999999999999999999999999999998
Q ss_pred --CCCcccCCccccccC
Q 034507 78 --EPGVTCKGVPNSVSI 92 (92)
Q Consensus 78 --~~g~t~~gIPnSIsI 92 (92)
++|||||||||||||
T Consensus 850 ~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 850 TGEGGLTGKGIPNSVSI 866 (866)
T ss_pred cCCCCcccCCCCCcccC
Confidence 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=99.91 E-value=6.1e-25 Score=184.74 Aligned_cols=75 Identities=51% Similarity=0.865 Sum_probs=64.9
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPS 76 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~ 76 (92)
|+++++||+|++||+|||+|+++. ||+|+++++||++|+++|++||++|++||+++++|||+||+++||+||+|+
T Consensus 593 ~~~~~~LS~~~~de~~Lg~~~~~~-w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 593 MAVLELLSRHSPDEEYLGQYPEPH-WFSDPEAKAAFERFQEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHTCB-TT--BTTT-SSTT-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHhccCCCCcccccCcCccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 678999999999999999999877 999999999999999999999999999999999999999999999999996
No 5
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=77.27 E-value=0.54 Score=33.32 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=18.4
Q ss_pred CCCChHHH--HHHHHHHHHHHHHH
Q 034507 26 WSGDGEIT--EAFFEFSAEIGRIE 47 (92)
Q Consensus 26 w~~d~~~~--~a~~~F~~~L~~ie 47 (92)
||.+-++. ++++.|+++|.+-.
T Consensus 37 WFgNTRvI~Q~~L~~FReem~~~~ 60 (130)
T PF08153_consen 37 WFGNTRVISQEALEKFREEMGEKV 60 (130)
T ss_pred hhcCceEECHHHHHHHHHHHHHhh
Confidence 99998875 79999999887644
No 6
>PF07870 DUF1657: Protein of unknown function (DUF1657); InterPro: IPR012452 This domain appears to be restricted to the Bacillales.
Probab=71.27 E-value=9.3 Score=22.50 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIEKR 53 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~~R 53 (92)
-+.|+++++.|++...+|.+|-..++.|
T Consensus 22 ~T~d~~AK~~y~~~a~~l~~ii~~L~~r 49 (50)
T PF07870_consen 22 QTQDQEAKQMYEQAAQQLEEIIQDLEPR 49 (50)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 3779999999999999999988877655
No 7
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=63.57 E-value=22 Score=25.06 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=19.9
Q ss_pred ccCCCcCCceeeccCCC-CCcccCC-ccccc
Q 034507 62 RCGAGVLPYELLVPSSE-PGVTCKG-VPNSV 90 (92)
Q Consensus 62 r~g~~~~PY~~L~P~~~-~g~t~~g-IPnSI 90 (92)
+..|.+..|.|..|..+ .--|||| -|.-|
T Consensus 89 kr~~~paKYky~dp~G~~~TWTGrGR~P~wi 119 (135)
T PRK10947 89 KRAARPAKYSYVDENGETKTWTGQGRTPAVI 119 (135)
T ss_pred cCCCCCCCCcccCCCCCcCcccCCCCCCHHH
Confidence 45567777999999532 4678998 66543
No 8
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=59.96 E-value=14 Score=27.52 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCCc
Q 034507 31 EITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPGV 81 (92)
Q Consensus 31 ~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g~ 81 (92)
++.++.++|.++|.+.-+.+.+.-+.. -+.+.+=+..||...+|..+.||
T Consensus 155 ~A~~~~~~~~~~l~~~g~~~l~~~~~~-~~~~Ivl~GrpY~~~D~~in~~I 204 (221)
T PF09989_consen 155 KALEAQKAFRRELRKGGEEILAELEAN-GKPAIVLLGRPYNIYDPFINMGI 204 (221)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhc-CCceEEEEcCCCcCCCcccCCch
Confidence 445566777777777655554443211 11245555789999999875544
No 9
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=59.46 E-value=4.6 Score=26.47 Aligned_cols=52 Identities=19% Similarity=0.391 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceee-ccCCCCCcccCCcccc
Q 034507 31 EITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELL-VPSSEPGVTCKGVPNS 89 (92)
Q Consensus 31 ~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L-~P~~~~g~t~~gIPnS 89 (92)
+..+-.++|-+++++++.+|.-.-.+.. . ..|...+ ....+.||...|||.+
T Consensus 31 ~~~~e~~~ll~e~a~lSdkI~~~~~~~~--~-----~~P~~~i~~~~~~~gIrF~GiP~G 83 (94)
T cd02974 31 EKSAELLELLEEIASLSDKITLEEDNDD--E-----RKPSFSINRPGEDTGIRFAGIPMG 83 (94)
T ss_pred cchHHHHHHHHHHHHhCCceEEEEecCC--C-----CCCEEEEecCCCcccEEEEecCCc
Confidence 5567788899999999888865433321 1 1455444 4444579999999975
No 10
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=52.65 E-value=38 Score=21.78 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=26.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+..|.+|++.++.+.++++++.++-+++--
T Consensus 25 HP~d~~Al~~y~~~~~~~~~l~~~Ye~~yG 54 (78)
T PF12652_consen 25 HPDDQEALEYYNEYSKQRKQLKKEYEKRYG 54 (78)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 577999999999999999999998887653
No 11
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=51.89 E-value=3.4 Score=26.85 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=11.0
Q ss_pred CCCcCCceeeccCCCCCcccCCcccccc
Q 034507 64 GAGVLPYELLVPSSEPGVTCKGVPNSVS 91 (92)
Q Consensus 64 g~~~~PY~~L~P~~~~g~t~~gIPnSIs 91 (92)
+||.+||..+.=+- ..+-..|.|..|+
T Consensus 21 ~~V~VPY~k~~~~p-~~v~V~GLPegi~ 47 (76)
T PF02946_consen 21 EPVPVPYEKFQRDP-EAVYVQGLPEGIP 47 (76)
T ss_dssp S-----HHHHHHTT-TTEEEES--TT--
T ss_pred CcccCCHHHHhhCC-CcEEEEeCCCCCc
Confidence 57889999876221 2366667777665
No 12
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=47.30 E-value=7 Score=33.27 Aligned_cols=39 Identities=28% Similarity=0.555 Sum_probs=27.8
Q ss_pred CCCChHHH--HHHHHHHHHHHHHHH----HHHHhcCCCCCccccCCCcCCceeeccC
Q 034507 26 WSGDGEIT--EAFFEFSAEIGRIEK----EIEKRNSDPSRRNRCGAGVLPYELLVPS 76 (92)
Q Consensus 26 w~~d~~~~--~a~~~F~~~L~~ie~----~I~~RN~~~~~knr~g~~~~PY~~L~P~ 76 (92)
||.+.++. .++++|+++|.+.-+ -|..+|+ +||.||.-.
T Consensus 79 WFgntRvI~q~~Lq~Fr~e~g~~~~dpyqVllk~~K------------lPmSLL~e~ 123 (572)
T KOG2423|consen 79 WFGNTRVISQTELQKFREELGKKLKDPYQVLLKQSK------------LPMSLLQEK 123 (572)
T ss_pred hccCceeecHHHHHHHHHHHHhhhcChhhheeecCC------------CChhhhhcc
Confidence 99999876 689999999865322 2444444 888887644
No 13
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=40.09 E-value=83 Score=24.11 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=29.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 034507 20 RQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKR 53 (92)
Q Consensus 20 ~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~R 53 (92)
.+.+. +.++....+.+..+|.+|..||++-..|
T Consensus 64 ~d~~D-~aTNeDLVQLV~ELQgQLd~lEeRsiRR 96 (216)
T PF07957_consen 64 IDMSD-YATNEDLVQLVGELQGQLDNLEERSIRR 96 (216)
T ss_pred ccccc-cccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446 8889999999999999999999999999
No 14
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=38.61 E-value=56 Score=22.55 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIEKR 53 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~~R 53 (92)
|-..+.+.+++.+-+++|+++|.+|.+.
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~e~Rl~~m 103 (121)
T TIGR02978 76 WQAGQSPRQALREVKREFRDLERRLRNM 103 (121)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666778889999999999999988765
No 15
>PF05098 LEF-4: Late expression factor 4 (LEF-4); InterPro: IPR007790 The baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) virus encodes a DNA-dependent RNA polymerase that is required for transcription of viral late genes. This polymerase is composed of four equimolar subunits, LEF-8, LEF-4, LEF-9, and p47. LEF-4 carries out all the enzymatic functions related to mRNA capping []. ; GO: 0006355 regulation of transcription, DNA-dependent
Probab=36.46 E-value=19 Score=30.23 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=39.1
Q ss_pred CCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeecc
Q 034507 8 STHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVP 75 (92)
Q Consensus 8 S~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P 75 (92)
|..++||+..--|-+-+ |-++..-.+++.+|.+=.+.++.-...-|=.|- +|||-|+=
T Consensus 154 shLGSDEILa~~RlE~E-ye~~~p~~~~L~~~a~lV~~~e~i~~~~nIsP~---------Lp~Ttl~N 211 (450)
T PF05098_consen 154 SHLGSDEILANIRLELE-YENGAPDEAVLDRFAELVKDMEAIAHDQNISPF---------LPYTTLQN 211 (450)
T ss_pred cccChHHhhhheEEEEE-ecCCCCCHHHHHHHHHHHHHHHHHhhcceeeec---------Cchhhhhc
Confidence 66788887766565544 443444456677777666777766677788787 99987653
No 16
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.42 E-value=58 Score=25.79 Aligned_cols=27 Identities=11% Similarity=0.303 Sum_probs=20.4
Q ss_pred CCCCCCChHHHHHHHHHH----HHHHHHHHHH
Q 034507 23 PWIWSGDGEITEAFFEFS----AEIGRIEKEI 50 (92)
Q Consensus 23 ~~~w~~d~~~~~a~~~F~----~~L~~ie~~I 50 (92)
++ |..||+.++..++|. +++.+-++++
T Consensus 29 sn-YDNDPeMK~Vme~F~rqTsQRF~EYdErm 59 (299)
T PF02009_consen 29 SN-YDNDPEMKSVMENFDRQTSQRFEEYDERM 59 (299)
T ss_pred cC-CCCcHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57 899999999999997 4555544444
No 17
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=35.85 E-value=50 Score=17.48 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q 034507 34 EAFFEFSAEIGRIEK 48 (92)
Q Consensus 34 ~a~~~F~~~L~~ie~ 48 (92)
..|..|-++|++|.+
T Consensus 7 d~f~eFY~rlk~Ike 21 (28)
T PF12108_consen 7 DPFSEFYERLKEIKE 21 (28)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 578999999999864
No 18
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=34.78 E-value=49 Score=21.22 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 034507 34 EAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 34 ~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+-|++-+++|.+||++++-=|.
T Consensus 12 ~~~~~i~~rLd~iEeKvEf~~~ 33 (70)
T PF04210_consen 12 DDFNEIMKRLDEIEEKVEFTNA 33 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH
Confidence 3467778899999998875553
No 19
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=34.51 E-value=43 Score=24.99 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSDP 57 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~ 57 (92)
+..+...+.+|..-+..|.+.|.+||..+
T Consensus 94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~Kl 122 (224)
T cd07591 94 RQTVLDPIGRFNSYFPEINEAIKKRNHKL 122 (224)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhH
Confidence 55666788888888999999999999754
No 20
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=33.48 E-value=47 Score=20.55 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 034507 30 GEITEAFFEFSAEIGR 45 (92)
Q Consensus 30 ~~~~~a~~~F~~~L~~ 45 (92)
..|..++++|+.+|++
T Consensus 3 ~~al~~lerlq~KL~~ 18 (58)
T PF09045_consen 3 QRALQALERLQAKLKE 18 (58)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4688999999999986
No 21
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=32.87 E-value=50 Score=18.88 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 034507 36 FFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 36 ~~~F~~~L~~ie~~I~~RN 54 (92)
+-+=++.|.+||+.|++|=
T Consensus 19 ll~d~~~me~Ieerie~k~ 37 (40)
T PF13040_consen 19 LLNDKEAMEKIEERIEEKH 37 (40)
T ss_pred HHcCHHHHHHHHHHHHHHH
Confidence 3334567889999999874
No 22
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=32.75 E-value=64 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSDP 57 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~ 57 (92)
+..+...+.+|..-+..|.+.|.+|+..+
T Consensus 95 ~~~V~~P~~~~~~~~~~i~k~IkKR~~k~ 123 (216)
T cd07599 95 EERVILPAKELKKYIKKIRKTIKKRDHKK 123 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888999999999998743
No 23
>PLN02256 arogenate dehydrogenase
Probab=32.74 E-value=68 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034507 28 GDGEITEAFFEFSAEIGRIEKEIEKRNSD 56 (92)
Q Consensus 28 ~d~~~~~a~~~F~~~L~~ie~~I~~RN~~ 56 (92)
.++.+.+++++|.+.|.++.+.|..|=.|
T Consensus 264 ~N~~~~~~i~~~~~~l~~~~~~l~~~~~~ 292 (304)
T PLN02256 264 YNPNATEELERLELAFDSVKKQLFGRLHD 292 (304)
T ss_pred HChHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 57777799999999999999999988654
No 24
>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]
Probab=32.38 E-value=1.1e+02 Score=26.49 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccccCCC----------cCCceeeccCCCCCcccCCcccccc
Q 034507 36 FFEFSAEIGRIEKEIEKRNSDPSRRNRCGAG----------VLPYELLVPSSEPGVTCKGVPNSVS 91 (92)
Q Consensus 36 ~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~----------~~PY~~L~P~~~~g~t~~gIPnSIs 91 (92)
+++|..++-+|..+|-.+|.......|.=|. .+|=+.+.|+..|.-.+-|||+|+|
T Consensus 3 vr~~~~r~~~~gr~ll~~~~~kp~~~rglprp~pAa~~lr~~vPr~v~~p~~~Pr~~~l~~p~~~t 68 (598)
T KOG4158|consen 3 VRRFGKRAYRIGRELLAKGGRKPIFQRGLPRPFPAAYNLRVHVPRVVLKPAPFPRQNALRIPRLVT 68 (598)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhhccCCCCccccccccccccceecCCCCCccccccCCCccch
Confidence 5788899999999999999987755554343 4555667787777777888999875
No 25
>PTZ00323 NAD+ synthase; Provisional
Probab=32.33 E-value=42 Score=26.27 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 35 AFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 35 a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
+..+|. +..+.-+.+..||+...
T Consensus 266 ~~~~~~-~~~~~~~~~~~~~~~~~ 288 (294)
T PTZ00323 266 ARKQFE-EYSAACELVHRRNAHKL 288 (294)
T ss_pred HHHHHH-HHHHHHHHHHhcccccc
Confidence 344443 23334456889998765
No 26
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=32.22 E-value=67 Score=22.92 Aligned_cols=27 Identities=7% Similarity=0.092 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+.++.+.+++|+++++++.+.+.....
T Consensus 127 ~~~a~~~~~~~~~~~~~i~~~~~~~~~ 153 (262)
T cd01147 127 EERAEELISFIESILADVEERTKDIPD 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 567788999999999999998876544
No 27
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=31.63 E-value=60 Score=20.81 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 034507 34 EAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 34 ~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+-|++-+++|.+||++++-=|.
T Consensus 12 ~d~~~i~~rLd~iEeKVEf~~~ 33 (70)
T TIGR01149 12 DEFNEVMKRLDEIEEKVEFVNG 33 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778899999999886554
No 28
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=31.40 E-value=60 Score=21.16 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 034507 35 AFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 35 a~~~F~~~L~~ie~~I~~RN~ 55 (92)
-|++-+++|.+||++++-=|.
T Consensus 16 d~~~i~~rLD~iEeKVEftn~ 36 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNA 36 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477788899999999886654
No 29
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.07 E-value=1e+02 Score=19.98 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSD 56 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~ 56 (92)
+...-++++++...|..+|+.|..|...
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~ 30 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLER 30 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678888999999999988888653
No 30
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=30.29 E-value=87 Score=16.19 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034507 33 TEAFFEFSAEIGRIEKEIEK 52 (92)
Q Consensus 33 ~~a~~~F~~~L~~ie~~I~~ 52 (92)
.+++..++++|+.+.+...+
T Consensus 4 qakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 4 QAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 46788999999998886553
No 31
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=30.21 E-value=1.2e+02 Score=17.79 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034507 31 EITEAFFEFSAEIGRIEKEIEK 52 (92)
Q Consensus 31 ~~~~a~~~F~~~L~~ie~~I~~ 52 (92)
++..+++....+|..++++++.
T Consensus 20 ~v~~~lq~Lt~kL~~vs~RLe~ 41 (47)
T PF10393_consen 20 KVTSALQSLTQKLDAVSKRLEA 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777653
No 32
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.16 E-value=72 Score=21.80 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 034507 28 GDGEITEAFFEFSAEIGRIEKEIEK 52 (92)
Q Consensus 28 ~d~~~~~a~~~F~~~L~~ie~~I~~ 52 (92)
.++++.+.++.|+++++++.+.+..
T Consensus 122 ~~~~a~~~i~~~~~~~~~i~~~~~~ 146 (186)
T cd01141 122 KEDKADEAFAQIAGRYRDLAKKVSN 146 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3577888999999999999988866
No 33
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=29.75 E-value=39 Score=23.97 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=20.6
Q ss_pred Cccccc--CCCCCCCChHHHHHHHH---HHHHHHHHH
Q 034507 16 YLGERQ--QPWIWSGDGEITEAFFE---FSAEIGRIE 47 (92)
Q Consensus 16 yLG~~~--~~~~w~~d~~~~~a~~~---F~~~L~~ie 47 (92)
=+||+- ++.++|.|..+.....+ ...++++|+
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~ 90 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELR 90 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcc
Confidence 378863 34569999999887643 444555444
No 34
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.73 E-value=65 Score=18.53 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=18.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIE 51 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~ 51 (92)
=|++..-.+.++++++++..+.+.|+
T Consensus 29 ~l~~e~~~~li~~~~~~i~~~~~~lk 54 (54)
T PF04423_consen 29 PLDEEHRQELIKKYKSEIEELPEKLK 54 (54)
T ss_dssp EE-HHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 35555668899999999999988763
No 35
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=29.07 E-value=94 Score=25.24 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHH-HHHHHHHhcCCCC
Q 034507 24 WIWSGDGEITEAFFEFSAEIGR-IEKEIEKRNSDPS 58 (92)
Q Consensus 24 ~~w~~d~~~~~a~~~F~~~L~~-ie~~I~~RN~~~~ 58 (92)
+ |+.|+....|+++|-++-.. ++..|++-|....
T Consensus 333 H-~~~~~~~~~ai~~fl~~e~~~~~~~~~~~~~~~P 367 (370)
T PF04339_consen 333 H-WIADPRFRDAIARFLQRERAAVQAYIQELNERLP 367 (370)
T ss_pred e-eeCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6 99999999999999887766 7888888776544
No 36
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=28.84 E-value=82 Score=24.19 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 28 GDGEITEAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 28 ~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
.+...+.+..+|..+...+|+.+.+++++..
T Consensus 203 pE~ALr~a~~KF~~Rf~~~E~~~~~~g~~~~ 233 (248)
T TIGR00444 203 AEIALQKANEKFERRFREVERIVAARGLELT 233 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 3455668999999999999999999988664
No 37
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=27.70 E-value=1.1e+02 Score=28.33 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCCCCCccccCCCcCCceeeccCCCCCcccCCccccc
Q 034507 34 EAFFEFSAEIGRIEKEIEKR--NSDPSRRNRCGAGVLPYELLVPSSEPGVTCKGVPNSV 90 (92)
Q Consensus 34 ~a~~~F~~~L~~ie~~I~~R--N~~~~~knr~g~~~~PY~~L~P~~~~g~t~~gIPnSI 90 (92)
+..+.|+.+|..|--...+. |..+.++|+.= --|-.|.|.| .++|-|||+=+
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~---~~~vsiVPTS--A~sGeGipdLl 679 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEM---GETVSIVPTS--AISGEGIPDLL 679 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccc---cceEEeeecc--cccCCCcHHHH
Confidence 45778999999987777664 44444555321 2377899988 89999999744
No 38
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.97 E-value=1.3e+02 Score=17.62 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034507 32 ITEAFFEFSAEIGRIEKEIEK 52 (92)
Q Consensus 32 ~~~a~~~F~~~L~~ie~~I~~ 52 (92)
.+...++.+.+++++++++++
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777777653
No 39
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=26.73 E-value=89 Score=23.82 Aligned_cols=49 Identities=24% Similarity=0.262 Sum_probs=31.9
Q ss_pred hhhccCCCCCCccCcccccCCCCCCCChHHH--------HHHHHHHHHHHHHHHHHHHhcC
Q 034507 3 VVDTLSTHSPDEEYLGERQQPWIWSGDGEIT--------EAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 3 ~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~--------~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+++++++..-| +.||+.-. .+.|++.. +.+.++.++|+.+++.+++=.+
T Consensus 137 iVEI~~~ermd-vpl~e~g~---~~v~~eyl~~lv~~~n~~l~r~k~kl~rl~~~le~l~~ 193 (208)
T COG1590 137 IVEIRGTERMD-VPLGEDGK---ILVDDEYLKFLVEIANEKLRRGKEKLARLEERLEELVE 193 (208)
T ss_pred EEEEcccceee-eeecCCCc---EEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555 67776544 34444433 4688899999999988876443
No 40
>PRK08818 prephenate dehydrogenase; Provisional
Probab=26.65 E-value=61 Score=26.17 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhc
Q 034507 27 SGDGEITEAFFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 27 ~~d~~~~~a~~~F~~~L~~ie~~I~~RN 54 (92)
.+++.+.+++++|.+.|.++.+.|++.|
T Consensus 224 ~~N~~i~~~l~~~~~~L~~l~~~i~~~D 251 (370)
T PRK08818 224 FGNPYVGEMLDRLLAQLQELRALVAQGD 251 (370)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3678889999999999999999987544
No 41
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.55 E-value=1.2e+02 Score=21.59 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN 54 (92)
+.++.+.++.|+++|+++.+++..+.
T Consensus 113 ~~~a~~l~~~~~~~l~~i~~~~~~~~ 138 (248)
T cd01138 113 EDEAEKWLADYKQKAKEAKEKIKKKL 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999998875
No 42
>PHA02100 hypothetical protein
Probab=26.20 E-value=93 Score=21.34 Aligned_cols=44 Identities=14% Similarity=0.171 Sum_probs=31.2
Q ss_pred hhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 034507 4 VDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIE 51 (92)
Q Consensus 4 ~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~ 51 (92)
-++||.+..- -||+-++ + --.-..+-.|.+++|.+-.+|.++|-
T Consensus 65 QYIl~EFd~q--AfGhtpt-h-~g~k~~aedaykkyqgkarkirqe~y 108 (112)
T PHA02100 65 QYISEEFGTQ--ALGHTPT-H-IGPKTMAEDAYKKYQGKARKIRQEIY 108 (112)
T ss_pred HHHHHHhCcc--ccCCCCC-c-cChHHHHHHHHHHhhhHHHHHHHHhh
Confidence 4566666554 6888776 3 23344566799999999999988774
No 43
>TIGR00541 hisDCase_pyru histidine decarboxylase, pyruvoyl type. This enzyme converts histadine to histamine in a single step by catalyzing the release of CO2. This type is synthesized as an inactive single chain precursor, then cleaved into two chains. The Ser at the new N-terminus at the cleavage site is converted to a pyruvoyl group essential for activity. This type of histidine decarboxylase appears is known so far only in some Gram-positive bacteria, where it may play a role in amino acid catabolism. There is also a pyridoxal phosphate type histidine decarboxylase, as found in human, where histamine is a biologically active amine.
Probab=25.86 E-value=1.1e+02 Score=24.61 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCC
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSS 77 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~ 77 (92)
|+.++..-++.+=|....+++.+-|-+--+|...+=+.-=+.+-|+.+.|..
T Consensus 203 w~~~~needl~~~L~~~rk~va~Si~~CG~Dq~v~y~~~~Ig~ay~~m~PGq 254 (310)
T TIGR00541 203 WEKNDNEDDLKEFLEDHRKAMAKSIAECGQDAHASFERSWIGFAYTIMEPGE 254 (310)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCeeEEEEEEEEEEEEccCcc
Confidence 8766666677777888889999999988887764444444456677788877
No 44
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.67 E-value=1.1e+02 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 034507 31 EITEAFFEFSAEIGRIEKEIEKRNSDP 57 (92)
Q Consensus 31 ~~~~a~~~F~~~L~~ie~~I~~RN~~~ 57 (92)
.+...+++|.+....|.+.|.+|+...
T Consensus 95 ~vl~Pl~~~~s~f~~I~~~I~KR~~Kl 121 (225)
T cd07590 95 TFIEPLKRLRSVFPSVNAAIKRREQSL 121 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467789999999999999999998754
No 45
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.44 E-value=1e+02 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 32 ITEAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 32 ~~~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
..+-+++++.++++++++|.+||.-..
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999997554
No 46
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=25.29 E-value=11 Score=25.97 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=16.4
Q ss_pred CcCCceeeccCCCCCcccCCccccc
Q 034507 66 GVLPYELLVPSSEPGVTCKGVPNSV 90 (92)
Q Consensus 66 ~~~PY~~L~P~~~~g~t~~gIPnSI 90 (92)
+.-||-++.|+...|-...|||..+
T Consensus 37 ~~ep~vLitpTy~~G~~~~~vp~~v 61 (122)
T PF07972_consen 37 VDEPFVLITPTYGFGENDGGVPKQV 61 (122)
T ss_dssp -SS-EEEEEE-BTTTBSSTSS-HHH
T ss_pred CCCCEEEEecccCCCCCCCCCCHHH
Confidence 4589999999997777666688654
No 47
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=24.50 E-value=1.2e+02 Score=21.78 Aligned_cols=25 Identities=8% Similarity=0.385 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKR 53 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~R 53 (92)
++++.+.++.|+++++++.+.....
T Consensus 115 ~~~a~~~~~~~~~~~~~i~~~~~~~ 139 (256)
T cd01146 115 EEEAEKLLAEYDQRLAELRQKLPDK 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5678889999999999999988775
No 48
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=24.45 E-value=1.2e+02 Score=22.72 Aligned_cols=29 Identities=14% Similarity=0.340 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSDP 57 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~ 57 (92)
...+...+++|.+-...|.+.|.+|+..+
T Consensus 89 ~~~Vl~Pl~~~~s~f~~i~k~I~KR~~Kl 117 (211)
T cd07588 89 SDQVLGPLTAYQSQFPEVKKRIAKRGRKL 117 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45667789999999999999999999754
No 49
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []. It is also found in other sequences and is related to the arrestin N-terminal fold [].
Probab=24.26 E-value=55 Score=24.54 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=13.9
Q ss_pred ccCCCcCCceeeccCC
Q 034507 62 RCGAGVLPYELLVPSS 77 (92)
Q Consensus 62 r~g~~~~PY~~L~P~~ 77 (92)
+.|-...||.||.|.+
T Consensus 48 ~~G~h~fPFS~LiPG~ 63 (191)
T PF13002_consen 48 TKGSHAFPFSYLIPGH 63 (191)
T ss_pred CCCcccCCeeEECCCC
Confidence 4577789999999999
No 50
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=23.89 E-value=1.4e+02 Score=21.97 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 034507 27 SGDGEITEAFFEFSAEIGRIEKEIE 51 (92)
Q Consensus 27 ~~d~~~~~a~~~F~~~L~~ie~~I~ 51 (92)
-.++...+.++.|.++|++|+..|.
T Consensus 135 v~~~~i~e~IKd~de~L~~I~d~iK 159 (163)
T PF03233_consen 135 VTEKLIEELIKDFDERLKEIRDKIK 159 (163)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888999999999988775
No 51
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.86 E-value=67 Score=21.27 Aligned_cols=19 Identities=21% Similarity=0.700 Sum_probs=13.7
Q ss_pred HHHHHHHhcCCCCCccccCCCcCCceeec
Q 034507 46 IEKEIEKRNSDPSRRNRCGAGVLPYELLV 74 (92)
Q Consensus 46 ie~~I~~RN~~~~~knr~g~~~~PY~~L~ 74 (92)
+++.|.+..+.+ +||++|.
T Consensus 61 L~~~i~~~G~eP----------~PfS~L~ 79 (89)
T PF10078_consen 61 LNDKIKEQGKEP----------VPFSALK 79 (89)
T ss_pred HHHHHHHcCCCC----------CCeeeeC
Confidence 456677766655 7999986
No 52
>COG2916 Hns DNA-binding protein H-NS [General function prediction only]
Probab=23.51 E-value=2.1e+02 Score=20.14 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=16.9
Q ss_pred ccCCCcCCceeeccCCC-CCcccCC-cc
Q 034507 62 RCGAGVLPYELLVPSSE-PGVTCKG-VP 87 (92)
Q Consensus 62 r~g~~~~PY~~L~P~~~-~g~t~~g-IP 87 (92)
.++|...+|.|.+++.+ .=-|||| .|
T Consensus 82 kr~~rpa~~~~~~~n~eg~TWTGrGR~P 109 (128)
T COG2916 82 KRAARPAKYKYYDENGEGKTWTGRGRTP 109 (128)
T ss_pred hccCCCCCCCeecCCCCCCcccCCCCCc
Confidence 35566777877777654 3458888 44
No 53
>PRK01203 prefoldin subunit alpha; Provisional
Probab=23.37 E-value=75 Score=22.37 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=28.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
+|.+...-++++.+++++++|++.|.+.++...
T Consensus 79 y~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~ 111 (130)
T PRK01203 79 VYIAEERERTIERLKENLEDLKDSIQKLNDQRK 111 (130)
T ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888999999999999999999887543
No 54
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=23.18 E-value=1.1e+02 Score=22.17 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSDP 57 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~ 57 (92)
+..+...+.+|.+-+..+.+.|.+|+...
T Consensus 87 ~~~V~~Pl~~~~~~~~~~~k~I~KR~~Kl 115 (195)
T cd07589 87 RKLVIEPLSSLLKLFSGPQKLIQKRYDKL 115 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 34566778888888999999999999865
No 55
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=23.18 E-value=1.1e+02 Score=23.67 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.1
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 034507 28 GDGE-ITEAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 28 ~d~~-~~~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+++. .++++++|.++|.++.+.|+.++.
T Consensus 234 ~N~~~~l~~i~~~~~~l~~l~~~i~~~d~ 262 (279)
T COG0287 234 SNKEALLEAIERFAKSLDELKELIENGDA 262 (279)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 5666 689999999999999999987764
No 56
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.72 E-value=1.1e+02 Score=20.66 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKR 53 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~R 53 (92)
+.++.+.++.|+++++++.+.+...
T Consensus 111 ~~~a~~~~~~~~~~~~~v~~~~~~~ 135 (195)
T cd01143 111 EEEAEKLVKEMKQKIDKVKDKGKTI 135 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5678889999999999998887654
No 57
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=22.66 E-value=1.1e+02 Score=24.51 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=38.1
Q ss_pred ccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCC
Q 034507 6 TLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGA 65 (92)
Q Consensus 6 ~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~ 65 (92)
+|=...+|.+.-| .. ||+|+..- -.|-+.|.++=-.+-++|..+.-||+.||
T Consensus 145 mLy~leP~~elTG----G~-WytDqdlD---vEfIe~L~~~c~~fl~~~~~~~~~~~~gp 196 (297)
T KOG3233|consen 145 MLYDLEPDSELTG----GT-WYTDQDLD---VEFIEVLKQICVRFLESKRFPAEKNVEGP 196 (297)
T ss_pred EEecccccccccC----Cc-cccccccc---HHHHHHHHHHHHHHHHhcccchhhccccc
Confidence 4444455544433 24 99997643 35888999988899999999998999999
No 58
>PRK08507 prephenate dehydrogenase; Validated
Probab=22.57 E-value=1.3e+02 Score=22.39 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCh-HHHHHHHHHHHHHHHHHHHHHHhc
Q 034507 28 GDG-EITEAFFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 28 ~d~-~~~~a~~~F~~~L~~ie~~I~~RN 54 (92)
.+. .+.+++++|.++|.++.+.|++.+
T Consensus 230 ~N~~~~~~~l~~~~~~l~~~~~~l~~~d 257 (275)
T PRK08507 230 QNKENVLEAIDEFIKELEQFKQLIENED 257 (275)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344 466899999999999999987643
No 59
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=22.55 E-value=35 Score=22.01 Aligned_cols=7 Identities=57% Similarity=1.084 Sum_probs=5.2
Q ss_pred CCccccc
Q 034507 84 KGVPNSV 90 (92)
Q Consensus 84 ~gIPnSI 90 (92)
-|||||.
T Consensus 35 pgIPN~~ 41 (79)
T PF08701_consen 35 PGIPNSF 41 (79)
T ss_pred CCCCCCC
Confidence 3599986
No 60
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=21.73 E-value=27 Score=27.07 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCC--CcccCCccc
Q 034507 35 AFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEP--GVTCKGVPN 88 (92)
Q Consensus 35 a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~--g~t~~gIPn 88 (92)
.-+.|-++-..+- +-||. +-||=.|=...- --||+|||.
T Consensus 29 iAetfLe~~~~vn---evR~m------------lgfTGtYKGk~iSvmg~GmGipS 69 (236)
T COG0813 29 IAETFLENAVCVN---EVRGM------------LGFTGTYKGKKISVMGHGMGIPS 69 (236)
T ss_pred HHHHHHhhhhhhh---hhcch------------hcccceecCcEEEEEEecCCCcc
Confidence 4455665555444 44555 556654433321 227888983
No 61
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=21.73 E-value=69 Score=27.35 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=31.5
Q ss_pred CCCChHHHHHHHHH-HHHHHHHHHHHHHhcCCCCCccccCCCcCCceeecc
Q 034507 26 WSGDGEITEAFFEF-SAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVP 75 (92)
Q Consensus 26 w~~d~~~~~a~~~F-~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P 75 (92)
+.+..+++++++.. .+-+++|.++.++|+. +.++.||.+.||-|+-=
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~i~~~r~~Re~---~~~~~g~~p~P~iy~iV 153 (509)
T PF09043_consen 106 MHDEEEIRAALRPYAKEGIERIDANRKEREE---YIERIGPGPKPVIYVIV 153 (509)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--ECSSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCCCeEEEEE
Confidence 34556666666654 5567778888888886 66799999999998753
No 62
>PLN02712 arogenate dehydrogenase
Probab=21.59 E-value=1.3e+02 Score=26.12 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034507 27 SGDGEITEAFFEFSAEIGRIEKEIEKRNSD 56 (92)
Q Consensus 27 ~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~ 56 (92)
..++.+.+.+++|++.|.++.+.|..|=.+
T Consensus 596 ~~N~~a~~~l~~f~~~l~~~~~~l~~~~~~ 625 (667)
T PLN02712 596 MYNVNAMEQLERLDLAFESLKKQLFGRLHG 625 (667)
T ss_pred HHChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999887443
No 63
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.43 E-value=1.2e+02 Score=22.19 Aligned_cols=27 Identities=7% Similarity=0.247 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
+.++.+.++.|+++++++.+.+.+.++
T Consensus 142 e~~A~~~i~~~~~~~~~v~~~~~~~~~ 168 (284)
T cd01148 142 EDRADKLVADLKARLAEISAKVKGDGK 168 (284)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 567788999999999999888876533
No 64
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=21.19 E-value=1.6e+02 Score=18.06 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHh
Q 034507 28 GDGEITEAFFEFSAEIGRIEKEIEKR 53 (92)
Q Consensus 28 ~d~~~~~a~~~F~~~L~~ie~~I~~R 53 (92)
.+..++++|++.+.++.++.+...++
T Consensus 47 ~~~~~l~~F~~~R~~Ie~~Ae~~i~~ 72 (83)
T PF07369_consen 47 SEEDLLAAFDRHRFDIEEAAERLIEQ 72 (83)
T ss_dssp SHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 46778899999999999977766666
No 65
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=21.16 E-value=1.8e+02 Score=18.95 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhcCCC---------CCccccCCCcCCceeec
Q 034507 27 SGDGEITEAFFEFSAEIGRIEKEIEKRNSDP---------SRRNRCGAGVLPYELLV 74 (92)
Q Consensus 27 ~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~---------~~knr~g~~~~PY~~L~ 74 (92)
++.-..-.-++.+.++|++.+.++.++++-. .-..+.-|-=+||..|.
T Consensus 9 ts~v~L~~~l~~~~E~lAen~H~~Wa~~r~~~GW~yG~~~d~~~k~hP~Lvpy~~L~ 65 (94)
T PF02026_consen 9 TSQVTLPPELEELIEKLAENEHDRWAKERIEQGWTYGEVRDDSRKTHPCLVPYDELS 65 (94)
T ss_dssp GTT----HHHHHHHHHHHHHHHHHHHHHHHHTT-BE-SSHBTTTTBETT-S-GGGS-
T ss_pred cCCeecCHHHHHHHHHHHHHHHHHHHHHHHhccceeccccccCCCCCCCCcChhhCC
Confidence 4455566778999999999999998877422 11122335567777764
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.07 E-value=1.6e+02 Score=23.49 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=29.0
Q ss_pred CcccccCCCCCCCChHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
Q 034507 16 YLGERQQPWIWSGDGEITEA-FFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 16 yLG~~~~~~~w~~d~~~~~a-~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
|||+.+- + -.+|..+-.. -+.||++++++.+.|+.=|....
T Consensus 282 ~~g~wpl-~-rp~d~~~w~~~~~~~qddikklnk~iddfn~~vp 323 (342)
T KOG0568|consen 282 KLGEWPL-Q-RPDDKAAWKHFCENFQDDIKKLNKLIDDFNCIVP 323 (342)
T ss_pred HhCCCCC-C-CcchHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence 6777654 3 3455555554 46799999999999999887543
No 67
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=20.87 E-value=1.7e+02 Score=21.82 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.0
Q ss_pred CChH-HHHHHHHHHHHHHHHHHHHHHhc
Q 034507 28 GDGE-ITEAFFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 28 ~d~~-~~~a~~~F~~~L~~ie~~I~~RN 54 (92)
.++. +.+++++|.+.|.++.+.|++.+
T Consensus 221 ~N~~~~~~~l~~~~~~L~~l~~~l~~~d 248 (258)
T PF02153_consen 221 SNPENLLEALDEFIKELNELREALEAGD 248 (258)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5676 88999999999999999998543
No 68
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=20.84 E-value=1.6e+02 Score=16.64 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=18.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 034507 29 DGEITEAFFEFSAEIGRIEKEI 50 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I 50 (92)
-+.++++++...++|+++..++
T Consensus 7 ~kaaKe~IKsLt~QlK~maekl 28 (39)
T PF13713_consen 7 CKAAKEVIKSLTAQLKDMAEKL 28 (39)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999988765
No 69
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.76 E-value=1.6e+02 Score=22.26 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN 54 (92)
+.++.+.++.|+++++++.+.+...+
T Consensus 148 ~~~A~~li~~~~~~l~~i~~~~~~~~ 173 (342)
T cd01139 148 EERAEEFIEFYQERIDRIRDRLAKIN 173 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56778889999999999999887653
No 70
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.64 E-value=1.8e+02 Score=23.32 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.1
Q ss_pred CCCCCCChHHHHHHHHHHH
Q 034507 23 PWIWSGDGEITEAFFEFSA 41 (92)
Q Consensus 23 ~~~w~~d~~~~~a~~~F~~ 41 (92)
|+ |-.||+.++.+++|.+
T Consensus 52 p~-Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 52 PH-YHNDPELKEIIDKLNE 69 (295)
T ss_pred CC-CCCcHHHHHHHHHHhH
Confidence 46 8999999999999987
No 71
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=20.63 E-value=1.3e+02 Score=19.52 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 034507 35 AFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 35 a~~~F~~~L~~ie~~I~~RN~ 55 (92)
-|++-.++|.+||++++-=|.
T Consensus 16 dfne~~kRLdeieekvef~~~ 36 (75)
T COG4064 16 DFNEIHKRLDEIEEKVEFVNG 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 467778899999998875553
No 72
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=20.36 E-value=98 Score=28.08 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 34 EAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 34 ~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
.-++-|.++|++|.+.-++||+++-
T Consensus 112 snle~FkeELkr~QE~Re~R~~~r~ 136 (877)
T KOG0151|consen 112 SNLELFKEELKRIQEEREERHKDRH 136 (877)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3588999999999999999999865
No 73
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=20.02 E-value=75 Score=24.27 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=21.3
Q ss_pred CCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 034507 10 HSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEI 50 (92)
Q Consensus 10 h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I 50 (92)
.+.||++++.-.+...||.+.+- -+..+..+|+++-..+
T Consensus 8 k~~de~~~~~~kd~D~wFe~ek~--~l~~~~~~Lk~~~~~~ 46 (218)
T cd07662 8 KSADGVIVSGVKDVDDFFEHERT--FLLEYHNRVKDSSAKS 46 (218)
T ss_pred hhhhHHHHhcccchhHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 46799998754432339977643 3344444444443333
Done!