Query 034507
Match_columns 92
No_of_seqs 106 out of 420
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iuk_A SEED lipoxygenase; iron 100.0 2.3E-34 7.9E-39 245.3 8.0 91 1-92 774-864 (864)
2 2iuj_A Lipoxygenase L-5; dioxy 100.0 2.8E-34 9.6E-39 244.6 8.3 91 1-92 762-853 (853)
3 1f8n_A Lipoxygenase-1; dioxyge 100.0 7.2E-34 2.4E-38 241.8 5.7 91 1-92 748-839 (839)
4 3d3l_A Arachidonate 12-lipoxyg 99.9 8.2E-24 2.8E-28 173.6 4.7 73 1-92 437-509 (541)
5 1lox_A 15-lipoxygenase, 15LOX; 99.9 2.4E-23 8.1E-28 173.7 5.9 73 1-92 590-662 (662)
6 3rde_A Arachidonate 12-lipoxyg 99.9 2.7E-23 9.2E-28 171.4 5.4 73 1-92 501-573 (573)
7 3v98_A Arachidonate 5-lipoxyge 99.9 1.2E-22 4.1E-27 170.3 5.8 73 1-92 619-691 (691)
8 3vf1_A 11R-lipoxygenase; LOX, 99.9 1.6E-22 5.6E-27 169.5 6.0 73 1-92 626-698 (698)
9 3fg1_A Allene oxide synthase-l 99.9 1.9E-22 6.5E-27 169.1 5.1 73 1-92 624-696 (696)
10 3dy5_A Allene oxide synthase-l 99.8 1.7E-21 5.7E-26 169.2 6.6 73 1-92 994-1066(1066)
11 3vou_A ION transport 2 domain 72.7 5.3 0.00018 26.4 4.3 29 34-62 120-148 (148)
12 3nku_A DRRA, SIDM; posttransla 59.4 18 0.0006 25.8 5.0 26 27-52 23-48 (213)
13 2akf_A Coronin-1A; coiled coil 56.1 20 0.0007 18.8 3.9 21 32-52 11-31 (32)
14 2dzr_A General transcription f 53.6 2.7 9.3E-05 27.7 -0.0 27 64-91 28-54 (99)
15 2dn5_A General transcription f 39.2 6.8 0.00023 25.2 0.2 27 64-91 28-54 (89)
16 1wlx_A Alpha-actinin 4; three- 34.8 74 0.0025 21.3 4.8 15 32-46 50-64 (129)
17 3cra_A Protein MAZG; tandem-re 33.7 45 0.0015 25.0 3.9 30 29-58 215-244 (265)
18 3twe_A Alpha4H; unknown functi 32.9 50 0.0017 16.5 3.7 21 31-51 5-25 (27)
19 1vf6_A PALS-1, PALS1-associate 31.3 23 0.00077 22.5 1.6 15 31-45 4-18 (83)
20 1q60_A General transcription f 30.2 13 0.00044 24.4 0.4 24 64-90 28-53 (99)
21 2eje_A General transcription f 28.9 14 0.00046 24.8 0.3 24 64-90 42-67 (114)
22 4ddp_A Beclin-1; ECD, autophag 28.6 67 0.0023 23.3 4.0 38 26-72 119-156 (210)
23 2d99_A Muscle, general transcr 26.8 14 0.00047 23.8 0.0 26 63-91 27-54 (90)
24 2dn4_A General transcription f 26.3 15 0.00052 24.0 0.2 24 64-90 28-53 (99)
25 2d9b_A Gtfii-I, general transc 25.1 15 0.00052 24.4 0.0 28 63-91 37-64 (109)
26 1dow_A Alpha-catenin; four-hel 25.1 99 0.0034 22.0 4.3 31 28-58 113-143 (205)
27 3lqv_P Splicing factor 3B subu 24.5 60 0.0021 17.8 2.4 13 45-57 11-23 (39)
28 2zvf_A Alanyl-tRNA synthetase; 23.2 88 0.003 20.5 3.6 25 30-54 28-52 (171)
29 3ggo_A Prephenate dehydrogenas 23.2 77 0.0026 23.1 3.6 28 28-55 268-296 (314)
30 2ket_A Cathelicidin-6; antimic 22.6 83 0.0029 15.6 2.6 15 36-50 3-17 (27)
31 2ed2_A General transcription f 21.9 19 0.00066 23.5 0.0 24 64-90 28-53 (99)
32 1ccd_A Clara cell 17 KD protei 20.5 31 0.0011 21.0 0.8 29 12-43 19-47 (77)
33 3rf3_A Vinculin, metavinculin; 20.3 1.3E+02 0.0043 22.0 4.2 30 29-58 154-183 (258)
No 1
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=100.00 E-value=2.3e-34 Score=245.28 Aligned_cols=91 Identities=53% Similarity=0.841 Sum_probs=89.0
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|+++. ||+|+++++||++|+++|++||+.|++||+++++|||+||+++||+||+|++++|
T Consensus 774 m~l~~lLS~h~~de~yLG~~~~~~-~~~d~~~~~a~~~F~~~L~~Ie~~I~~RN~~~~lknR~g~~~lPY~yL~P~s~~g 852 (864)
T 2iuk_A 774 LSVIEILSRHASDEIYLGERETPN-WTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEG 852 (864)
T ss_dssp HHHHHHHTCCCSSCCBTTCCSCTT-SCSCHHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGTGGGTCCCCTTCSCCCSS
T ss_pred HHHHHHHhcCCCCcccccccCccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCCCCCCceeeCCCCCCC
Confidence 578999999999999999999878 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
||||||||||||
T Consensus 853 ~t~~~IPNSIsI 864 (864)
T 2iuk_A 853 LTFKGIPNSISI 864 (864)
T ss_dssp SCSCCCBSSCCC
T ss_pred cccCCCCCcccC
Confidence 999999999998
No 2
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max}
Probab=100.00 E-value=2.8e-34 Score=244.65 Aligned_cols=91 Identities=44% Similarity=0.813 Sum_probs=88.9
Q ss_pred CchhhccCCCCCCccCcccccCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQP-WIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEP 79 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~-~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~ 79 (92)
|+++|+||+|++||+|||+|+++ + ||+|+++++||++|+++|++||+.|++||+++++|||+||+++||+||+|++++
T Consensus 762 m~l~~lLS~~~~de~yLG~~~~~~~-~~~d~~~~~a~~~F~~~L~~Ie~~I~~RN~~~~lknr~g~~~~PY~~L~P~s~~ 840 (853)
T 2iuj_A 762 LTIIEILSRHASDEFYLGQRDGGDY-WTSDAGPLEAFKRFGKNLEEIEKKLIEKNNDETLRNRYGPAKMPYTLLYPSSEE 840 (853)
T ss_dssp HHHHHHTTCBCTTCCBTTTCSSCTT-SCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCGGGTTTTTCCCCTTCSCCCS
T ss_pred HHHHHHHcCCCCCcccccccCcccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCCCCCCceeeCCCCCC
Confidence 57899999999999999999987 7 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccccccC
Q 034507 80 GVTCKGVPNSVSI 92 (92)
Q Consensus 80 g~t~~gIPnSIsI 92 (92)
|||||||||||||
T Consensus 841 g~t~~~IPNSIsI 853 (853)
T 2iuj_A 841 GLTFRGIPNSISI 853 (853)
T ss_dssp BSCSCCCBSSCCC
T ss_pred CcccCCCCCcccC
Confidence 9999999999998
No 3
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ...
Probab=100.00 E-value=7.2e-34 Score=241.84 Aligned_cols=91 Identities=48% Similarity=0.883 Sum_probs=88.9
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccCCCcCCceeeccCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRR-NRCGAGVLPYELLVPSSEP 79 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~k-nr~g~~~~PY~~L~P~~~~ 79 (92)
|+++++||+|++||+|||+|++++ ||+|+++++||++|+++|++||+.|++||+++++| ||+||+++||+||+|++++
T Consensus 748 m~l~~lLS~~~~de~yLG~~~~~~-~~~d~~~~~a~~rF~~~L~~Ie~~I~~RN~d~~lk~nr~g~~~~PY~~L~P~s~~ 826 (839)
T 1f8n_A 748 LSVIEILSTHASDEVYLGQRDNPH-WTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE 826 (839)
T ss_dssp HHHHHHHTCBCTTCCBTTCCSCTT-SCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHTTTTTCCCCTTCSCCCS
T ss_pred HHHHHHHhcCCCCcccccccCccc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhccCCCCCCCceeeCCCCCC
Confidence 578999999999999999999878 99999999999999999999999999999999999 9999999999999999999
Q ss_pred CcccCCccccccC
Q 034507 80 GVTCKGVPNSVSI 92 (92)
Q Consensus 80 g~t~~gIPnSIsI 92 (92)
|||||||||||||
T Consensus 827 g~t~~~IPNSIsI 839 (839)
T 1f8n_A 827 GLTFRGIPNSISI 839 (839)
T ss_dssp BSCSCCCBSSCCC
T ss_pred CcccCCCCCccCC
Confidence 9999999999998
No 4
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens}
Probab=99.88 E-value=8.2e-24 Score=173.56 Aligned_cols=73 Identities=33% Similarity=0.493 Sum_probs=65.6
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++||++|+++|++||++|++||++++ +||+||+|+.
T Consensus 437 ~~~~~~LS~~~~de~~LG~y~~-~-~f~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~---------~PY~~L~P~~--- 502 (541)
T 3d3l_A 437 MAISWHLSRRQPDMVPLGHHKE-K-YFSGPKPKAVLNQFRTDLEKLEKEITARNEQLD---------WPYEYLKPSC--- 502 (541)
T ss_dssp HHHHHHHC----CCCBTTCCCC-C-SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---------SCCCSCCGGG---
T ss_pred HHHHHHhccCCCCCcccccCCc-c-cccChHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------CCCceECCCC---
Confidence 5789999999999999999988 7 999999999999999999999999999999998 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 503 -----IpnSIsI 509 (541)
T 3d3l_A 503 -----IENSVTS 509 (541)
T ss_dssp -----SBSSCC-
T ss_pred -----CCcEEEE
Confidence 9999998
No 5
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*
Probab=99.88 E-value=2.4e-23 Score=173.67 Aligned_cols=73 Identities=37% Similarity=0.492 Sum_probs=68.6
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++||++|+++|++||++|++||++++ +||+||+|+.
T Consensus 590 ~~~~~~LS~~~~de~~LG~~~~-~-~~~d~~~~~a~~~F~~~L~~ie~~I~~rN~~~~---------~PY~~L~P~~--- 655 (662)
T 1lox_A 590 MSIVWQLGRDQPIMVPLGQHQE-E-YFSGPEPRAVLEKFREELAIMDKEIEVRNEKLD---------IPYEYLRPSI--- 655 (662)
T ss_dssp HHHHHHTT--CCCCCBTTCCCC-C-CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------SCCCTTCTTT---
T ss_pred HHHHHHhccCCCCccccccCCc-c-cccCHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---------CCceeECCCC---
Confidence 5789999999999999999987 7 999999999999999999999999999999998 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 656 -----ipnSisI 662 (662)
T 1lox_A 656 -----VENSVAI 662 (662)
T ss_dssp -----SBSSCCC
T ss_pred -----CCccccC
Confidence 9999998
No 6
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa}
Probab=99.87 E-value=2.7e-23 Score=171.45 Aligned_cols=73 Identities=33% Similarity=0.500 Sum_probs=70.1
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++|+++|+++|++||++|++||++++ +||+||+|+.
T Consensus 501 ~~~~~~LS~~~~de~~LG~y~~-~-~f~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~---------~PY~~L~P~~--- 566 (573)
T 3rde_A 501 MSITWQLGRCQPTMVALGQHEE-E-YFSGPGPKAVLTKFREELAALDKDIEVRNAKLA---------LPYEYLRPSR--- 566 (573)
T ss_dssp HHHHHHHHSCCTTCCBTTCCCC-C-CSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------SCCCTTCTTT---
T ss_pred HHHHHHhcCCCCCCcccccCCc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCcccCCCCC---
Confidence 5789999999999999999987 6 899999999999999999999999999999987 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 567 -----IpnSIsI 573 (573)
T 3rde_A 567 -----VENSVAI 573 (573)
T ss_dssp -----SBSSCCC
T ss_pred -----CCCcccC
Confidence 9999998
No 7
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Probab=99.86 E-value=1.2e-22 Score=170.28 Aligned_cols=73 Identities=32% Similarity=0.439 Sum_probs=70.0
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++|+++|+++|++||++|++||++++ +||+||+|+.
T Consensus 619 ~~~~~~LS~~~~de~~LG~y~~-~-~f~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~---------~PY~~L~P~~--- 684 (691)
T 3v98_A 619 LGAVWALSQFQENELFLGMYPE-E-HFIEKPVKEAMARFRKNLEAIVSVIAERNENLQ---------LPYYYLDPDR--- 684 (691)
T ss_dssp HHHHHHHTCCCTTCCBTTCCCS-C-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS---------SCCCTTCGGG---
T ss_pred HHHHHHhcCCCCCCcccccCCc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCcccCCCCC---
Confidence 5789999999999999999987 6 889999999999999999999999999999987 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 685 -----IpnSIsI 691 (691)
T 3v98_A 685 -----IPNSVAI 691 (691)
T ss_dssp -----CBSSCCC
T ss_pred -----CCceeeC
Confidence 9999998
No 8
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Probab=99.86 E-value=1.6e-22 Score=169.54 Aligned_cols=73 Identities=36% Similarity=0.626 Sum_probs=69.3
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++|+++|+++|++||++|++||++++ +||+||+|+.
T Consensus 626 ~~~~~~LS~~~~de~~LG~y~~-~-~~~~~~~~~a~~~F~~~L~~ie~~I~~RN~~~~---------~PY~~L~P~~--- 691 (698)
T 3vf1_A 626 VSVVNALTTIYPTEKFLGDYAD-N-LFGDAAAHAAMAKFKSNLANITKQITERNQGMV---------SPYTWLIPGH--- 691 (698)
T ss_dssp HHHHHHHTCCCTTCCBTTCCTT-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCS---------SCCCTTCGGG---
T ss_pred HHHHHHhcCCCCCCcccccCCc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCcccCCCCC---
Confidence 5789999999999999999987 5 677999999999999999999999999999987 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 692 -----IpnSIsI 698 (698)
T 3vf1_A 692 -----VPNSIAI 698 (698)
T ss_dssp -----SBSSCCC
T ss_pred -----CCCeeeC
Confidence 9999998
No 9
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A
Probab=99.86 E-value=1.9e-22 Score=169.13 Aligned_cols=73 Identities=33% Similarity=0.533 Sum_probs=69.3
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++|+++|+++|++||++|++||++++ +||+||+|+.
T Consensus 624 ~~~~~~LS~~~~de~~LG~y~~-~-~~~~~~~~~a~~~F~~~L~~ie~~I~~RN~~~~---------~PY~~L~P~~--- 689 (696)
T 3fg1_A 624 IATVYILTKFSEDERYLGNYSA-T-AWEDKDALDAINRFQDKLEDISKKIKQRNENLE---------VPYIYLLPER--- 689 (696)
T ss_dssp HHHHHHHTCCCTTCCBTTCCTT-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---------SCCCTTCGGG---
T ss_pred HHHHHHhcCCCCCccccccCCc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCcccCCCCC---
Confidence 5789999999999999999987 5 677899999999999999999999999999987 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 690 -----IpnSIsI 696 (696)
T 3fg1_A 690 -----IPNGTAI 696 (696)
T ss_dssp -----SBSSCCC
T ss_pred -----CCceeeC
Confidence 9999998
No 10
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=99.84 E-value=1.7e-21 Score=169.15 Aligned_cols=73 Identities=33% Similarity=0.533 Sum_probs=69.3
Q ss_pred CchhhccCCCCCCccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCceeeccCCCCC
Q 034507 1 MAVVDTLSTHSPDEEYLGERQQPWIWSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYELLVPSSEPG 80 (92)
Q Consensus 1 m~~~~~LS~h~~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~L~P~~~~g 80 (92)
|+++++||+|++||+|||+|++ . ||+|+++++|+++|+++|++||++|++||++.+ +||+||+|+.
T Consensus 994 ~~~~~~LS~~~~de~~Lg~y~~-~-~~~d~~~~~a~~~F~~~L~~i~~~I~~RN~~~~---------~pY~~L~P~~--- 1059 (1066)
T 3dy5_A 994 IATVYILTKFSEDERYLGNYSA-T-AWEDKDALDAINRFQDKLEDISKKIKQRNENLE---------VPYIYLLPER--- 1059 (1066)
T ss_dssp HHHHHHHTCCCTTCCBTTCCTT-S-CCCSHHHHHHHHHHHHHHHHHHHHHHHHTTSCS---------SCCCTTSTTS---
T ss_pred HHHHHHhcCCCCCccccccCCc-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------CCcccCCCCC---
Confidence 5789999999999999999987 5 677999999999999999999999999999987 9999999998
Q ss_pred cccCCccccccC
Q 034507 81 VTCKGVPNSVSI 92 (92)
Q Consensus 81 ~t~~gIPnSIsI 92 (92)
|||||||
T Consensus 1060 -----IpnSIsI 1066 (1066)
T 3dy5_A 1060 -----IPNGTAI 1066 (1066)
T ss_dssp -----CBSSCCC
T ss_pred -----CCceeeC
Confidence 9999998
No 11
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=72.67 E-value=5.3 Score=26.39 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 034507 34 EAFFEFSAEIGRIEKEIEKRNSDPSRRNR 62 (92)
Q Consensus 34 ~a~~~F~~~L~~ie~~I~~RN~~~~~knr 62 (92)
+...++.++|+++++.++++|....|+.|
T Consensus 120 ~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 120 AYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 34566788999999999999998887665
No 12
>3nku_A DRRA, SIDM; posttranslational modification, ampylation, adenylylation, R RAB1, vesicular transport, protein transport; HET: MSE PGE; 2.10A {Legionella pneumophila subsp}
Probab=59.37 E-value=18 Score=25.77 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q 034507 27 SGDGEITEAFFEFSAEIGRIEKEIEK 52 (92)
Q Consensus 27 ~~d~~~~~a~~~F~~~L~~ie~~I~~ 52 (92)
.-.|.+++-|+.+|.+|+.+++.|.+
T Consensus 23 llsptaqkkfeeyqnklanlskiire 48 (213)
T 3nku_A 23 LLSPTAQKKFEEYQNKLANLSKIIRE 48 (213)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHhHHHHHHh
Confidence 55899999999999999999998765
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=56.12 E-value=20 Score=18.75 Aligned_cols=21 Identities=10% Similarity=0.371 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034507 32 ITEAFFEFSAEIGRIEKEIEK 52 (92)
Q Consensus 32 ~~~a~~~F~~~L~~ie~~I~~ 52 (92)
.....+++|+++.++|+++++
T Consensus 11 l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 11 LNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345788899999999998875
No 14
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.58 E-value=2.7 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=18.6
Q ss_pred CCCcCCceeeccCCCCCcccCCcccccc
Q 034507 64 GAGVLPYELLVPSSEPGVTCKGVPNSVS 91 (92)
Q Consensus 64 g~~~~PY~~L~P~~~~g~t~~gIPnSIs 91 (92)
.||++||..+.=+- .-|-..|+|.+|.
T Consensus 28 ~pV~VPY~~i~~np-~av~V~GLPegIp 54 (99)
T 2dzr_A 28 YPVQVPYKRIKSNP-GSVIIEGLPPGIP 54 (99)
T ss_dssp SCCCCCHHHHHHCS-SSEEEESCCTTCC
T ss_pred CceeCCHHHHhcCC-CeEEEecCCCCCc
Confidence 47889999876332 3466777777764
No 15
>2dn5_A General transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.17 E-value=6.8 Score=25.19 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=18.6
Q ss_pred CCCcCCceeeccCCCCCcccCCcccccc
Q 034507 64 GAGVLPYELLVPSSEPGVTCKGVPNSVS 91 (92)
Q Consensus 64 g~~~~PY~~L~P~~~~g~t~~gIPnSIs 91 (92)
.|+.+||..+.=+- .-|-..|.|+.|.
T Consensus 28 ~pv~VPY~~~~~~p-~~v~V~GlP~gi~ 54 (89)
T 2dn5_A 28 RPVLVPYKLIRDSP-DAVEVTGLPDDIP 54 (89)
T ss_dssp SCCCCCHHHHHHCT-TSEEEESCCTTCC
T ss_pred CceeccHHHHhcCC-CeEEEEeCCCCcc
Confidence 47889999876332 3467777787764
No 16
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=34.83 E-value=74 Score=21.32 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q 034507 32 ITEAFFEFSAEIGRI 46 (92)
Q Consensus 32 ~~~a~~~F~~~L~~i 46 (92)
.+.+++.|.+.|.+.
T Consensus 50 L~~~He~F~~~L~~a 64 (129)
T 1wlx_A 50 LISAHDQFKSTLPDA 64 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 345778888877433
No 17
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=33.67 E-value=45 Score=24.95 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
+...+++..+|..+...+|+.+.+++++..
T Consensus 215 E~ALr~an~KF~~Rf~~~E~~~~~~g~~l~ 244 (265)
T 3cra_A 215 EIALQKANEKFERRFREVERIVAARGLEMT 244 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 445568999999999999999999888664
No 18
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.86 E-value=50 Score=16.48 Aligned_cols=21 Identities=10% Similarity=0.388 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034507 31 EITEAFFEFSAEIGRIEKEIE 51 (92)
Q Consensus 31 ~~~~a~~~F~~~L~~ie~~I~ 51 (92)
+..+-++.+|++|.++.+.+.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345667888999998888654
No 19
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=31.33 E-value=23 Score=22.52 Aligned_cols=15 Identities=0% Similarity=0.180 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 034507 31 EITEAFFEFSAEIGR 45 (92)
Q Consensus 31 ~~~~a~~~F~~~L~~ 45 (92)
+|.+++++|+.+|++
T Consensus 4 rvLq~leRLQ~KL~e 18 (83)
T 1vf6_A 4 QVLQVLDRLKMKLQE 18 (83)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567899999988875
No 20
>1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1
Probab=30.24 E-value=13 Score=24.35 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=15.1
Q ss_pred CCCcCCceee--ccCCCCCcccCCccccc
Q 034507 64 GAGVLPYELL--VPSSEPGVTCKGVPNSV 90 (92)
Q Consensus 64 g~~~~PY~~L--~P~~~~g~t~~gIPnSI 90 (92)
.|++|||..+ +|+. |...|.|..|
T Consensus 28 ~pv~VPY~k~~~~P~~---v~V~GLP~gi 53 (99)
T 1q60_A 28 QAVKVPFALFESFPED---FYVEGLPEGV 53 (99)
T ss_dssp SCCCCCHHHHHHCTTT---EEEESCCTTC
T ss_pred CcccCCHHHHhcCCce---EEeecCCCCc
Confidence 4889999875 4444 4445555554
No 21
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.92 E-value=14 Score=24.83 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=14.5
Q ss_pred CCCcCCceee--ccCCCCCcccCCccccc
Q 034507 64 GAGVLPYELL--VPSSEPGVTCKGVPNSV 90 (92)
Q Consensus 64 g~~~~PY~~L--~P~~~~g~t~~gIPnSI 90 (92)
.||++||..+ +|.. |-.-|.|.+|
T Consensus 42 ~pVkVPY~k~~~~P~~---v~V~GLPeGi 67 (114)
T 2eje_A 42 FPVKVPYRKITINPGC---VVVDGMPPGV 67 (114)
T ss_dssp SCCCCCHHHHHHCSSS---EEEECCCTTC
T ss_pred CcccCCHHHHhcCCcc---EEeecCCCCC
Confidence 5899999874 4544 3334444444
No 22
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=28.63 E-value=67 Score=23.28 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=30.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCcCCcee
Q 034507 26 WSGDGEITEAFFEFSAEIGRIEKEIEKRNSDPSRRNRCGAGVLPYEL 72 (92)
Q Consensus 26 w~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~knr~g~~~~PY~~ 72 (92)
.|.+.+--.|+..|-+=|+++.+.+.+.+...+ +||..
T Consensus 119 ~f~~~kFD~Am~afL~cl~q~~~~~~~~~~~~~---------lPY~I 156 (210)
T 4ddp_A 119 FFWDNKFDHAMVAFLDCVQQFKEEVEKGETRFC---------LPYRM 156 (210)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHHCC-CCCC---------CSSCE
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhcCCCCCC---------CCeEE
Confidence 456788889999999999999999997665555 99985
No 23
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.79 E-value=14 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=15.6
Q ss_pred cCCCcCCceee--ccCCCCCcccCCcccccc
Q 034507 63 CGAGVLPYELL--VPSSEPGVTCKGVPNSVS 91 (92)
Q Consensus 63 ~g~~~~PY~~L--~P~~~~g~t~~gIPnSIs 91 (92)
..|+++||..+ +|.. |-..|.|.+|+
T Consensus 27 ~~pv~VPY~k~l~~P~~---l~V~GLPeGi~ 54 (90)
T 2d99_A 27 ASVVPLPYERLLREPGL---LAVQGLPEGLA 54 (90)
T ss_dssp SSCCCCCHHHHHHCTTT---EEEESCCSSCC
T ss_pred CCcccCCHHHHhcCCcc---EEeecCCCCCc
Confidence 35889999875 4443 34445555543
No 24
>2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.27 E-value=15 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=15.1
Q ss_pred CCCcCCceee--ccCCCCCcccCCccccc
Q 034507 64 GAGVLPYELL--VPSSEPGVTCKGVPNSV 90 (92)
Q Consensus 64 g~~~~PY~~L--~P~~~~g~t~~gIPnSI 90 (92)
.|+++||..+ +|+. |...|.|..|
T Consensus 28 ~pv~VPY~k~~~~P~~---v~V~GLP~gi 53 (99)
T 2dn4_A 28 GPVTIPYPLFQSHVED---LYVEGLPEGI 53 (99)
T ss_dssp SCCCCCHHHHHHTTTT---EEEESCCTTC
T ss_pred CcccCCHHHHhcCcce---EEeecCCCCc
Confidence 5899999875 4443 4444555554
No 25
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=25.11 E-value=15 Score=24.40 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=16.2
Q ss_pred cCCCcCCceeeccCCCCCcccCCcccccc
Q 034507 63 CGAGVLPYELLVPSSEPGVTCKGVPNSVS 91 (92)
Q Consensus 63 ~g~~~~PY~~L~P~~~~g~t~~gIPnSIs 91 (92)
..|+++||..+.=.- .-|-..|.|..|+
T Consensus 37 ~~pV~VPY~k~~~~p-~~v~V~GLPegi~ 64 (109)
T 2d9b_A 37 STVVPVPYEKMLRDQ-SAVVVQGLPEGVA 64 (109)
T ss_dssp SSCCCCCHHHHHHCC-SSEEEESCCTTCC
T ss_pred CCcccCCHHHHhcCC-ccEEEeeCCCCCc
Confidence 358889999764222 1244555665553
No 26
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus} SCOP: a.24.9.1 PDB: 1dov_A
Probab=25.05 E-value=99 Score=22.03 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 28 GDGEITEAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 28 ~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
+-.+..+.|+.|...|.++.....+|-+|++
T Consensus 113 s~~el~~~f~~f~~~m~~l~~l~~~Rq~dLk 143 (205)
T 1dow_A 113 NEQDLGIQYKALKPEVDKLNIMAAKRQQELK 143 (205)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 3456788999999999999999999999987
No 27
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.48 E-value=60 Score=17.78 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCCC
Q 034507 45 RIEKEIEKRNSDP 57 (92)
Q Consensus 45 ~ie~~I~~RN~~~ 57 (92)
.+++.|++||+-.
T Consensus 11 ~~~~ei~~RNrpl 23 (39)
T 3lqv_P 11 RWEREIDERNRPL 23 (39)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HhhccchhhcCCC
Confidence 4578999999743
No 28
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=23.19 E-value=88 Score=20.48 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 034507 30 GEITEAFFEFSAEIGRIEKEIEKRN 54 (92)
Q Consensus 30 ~~~~~a~~~F~~~L~~ie~~I~~RN 54 (92)
+++.+.++++++++++++++|++-.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888776543
No 29
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=23.17 E-value=77 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=23.2
Q ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHhcC
Q 034507 28 GDGEI-TEAFFEFSAEIGRIEKEIEKRNS 55 (92)
Q Consensus 28 ~d~~~-~~a~~~F~~~L~~ie~~I~~RN~ 55 (92)
.++.+ .+++++|.++|.++.+.|++-+.
T Consensus 268 ~N~~~~~~~l~~~~~~l~~l~~~l~~~d~ 296 (314)
T 3ggo_A 268 ENKENVMKAIEGFEKSLNHLKELIVREAE 296 (314)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 56664 79999999999999999986543
No 30
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=22.61 E-value=83 Score=15.64 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 034507 36 FFEFSAEIGRIEKEI 50 (92)
Q Consensus 36 ~~~F~~~L~~ie~~I 50 (92)
|++|+.+.+++=+.+
T Consensus 3 fkrfrkkfkklfkkl 17 (27)
T 2ket_A 3 FKRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 678888877765543
No 31
>2ed2_A General transcription factor II-I; unknown function, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.92 E-value=19 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=14.9
Q ss_pred CCCcCCceee--ccCCCCCcccCCccccc
Q 034507 64 GAGVLPYELL--VPSSEPGVTCKGVPNSV 90 (92)
Q Consensus 64 g~~~~PY~~L--~P~~~~g~t~~gIPnSI 90 (92)
.|++|||..+ +|+. +...|.|..|
T Consensus 28 ~pv~VPY~k~~~~P~~---l~V~GLP~gI 53 (99)
T 2ed2_A 28 EAKAVPYQKFEAHPND---LYVEGLPENI 53 (99)
T ss_dssp SCCCCCHHHHHHCTTT---EEEESCCTTC
T ss_pred CcccCCHHHHhcCcce---EEeecCCCCc
Confidence 4889999875 4444 4444555554
No 32
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=20.48 E-value=31 Score=20.96 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCccCcccccCCCCCCCChHHHHHHHHHHHHH
Q 034507 12 PDEEYLGERQQPWIWSGDGEITEAFFEFSAEI 43 (92)
Q Consensus 12 ~dE~yLG~~~~~~~w~~d~~~~~a~~~F~~~L 43 (92)
+.|+|..+-.. |..++++.+|..+|++=.
T Consensus 19 s~~~Y~~~l~~---y~~~~~a~eA~~~lK~C~ 47 (77)
T 1ccd_A 19 SESNYEAALKP---FNPASDLQNAGTQLKRLV 47 (77)
T ss_dssp CHHHHHHHHTT---TCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence 66667766544 788999999988887533
No 33
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=20.29 E-value=1.3e+02 Score=22.04 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 034507 29 DGEITEAFFEFSAEIGRIEKEIEKRNSDPS 58 (92)
Q Consensus 29 d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~ 58 (92)
-.+..++|+.|...|.++.....+|-+|++
T Consensus 154 ~~el~~~~~~f~~~~~~L~~~~~~Rq~eL~ 183 (258)
T 3rf3_A 154 MEDLVTYTKNLGPGMTKMAKMIDERQQELT 183 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455788999999999999999999999876
Done!