BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034510
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 79/81 (97%)
Query: 11 ANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLP 70
ANAASGMAVHDDCKL+FLELKAKRT+RFIV+KIEEKQKQV+VEK+G+P QTYE+FAA LP
Sbjct: 2 ANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP 61
Query: 71 AEECRYAVYDYDFVTAENCQK 91
A+ECRYA+YD+DFVTAENCQK
Sbjct: 62 ADECRYAIYDFDFVTAENCQK 82
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 47/69 (68%)
Query: 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 74
SG+AV DDC KF ELK +R++ FK+ +V+VE +G P TYEDF + LP +C
Sbjct: 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDC 60
Query: 75 RYAVYDYDF 83
RYA++DY+F
Sbjct: 61 RYAIFDYEF 69
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%)
Query: 16 GMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECR 75
G+AV DDC KF ELK +R++ FK+ +V+VE +G P TYEDF + LP +CR
Sbjct: 2 GIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCR 61
Query: 76 YAVYDYDF 83
YA++DY+F
Sbjct: 62 YAIFDYEF 69
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
Query: 14 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE 73
ASGM V ++C +F ELK ++T ++IVFKIE +++VEK G+ ++F +LPA +
Sbjct: 23 ASGMGVDENCVARFNELKIRKTVKWIVFKIE--NTKIVVEKDGK--GNADEFRGALPAND 78
Query: 74 CRYAVYD 80
CR+ VYD
Sbjct: 79 CRFGVYD 85
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 74
SG+ V +C F ELK ++ R++VFK+ + + +++VEK + ++ F LP ++C
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDC 62
Query: 75 RYAVYDYDFVTAENCQKK 92
RYA+YD++F E + K
Sbjct: 63 RYAIYDFEFNLGEGVRNK 80
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIV-EKLGEPTQTYEDFAASLPAEE 73
SG+AV D+ F +LK + Y+FI+F + + + +++V E +P +Y+ F LP +
Sbjct: 4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP--SYDAFLEKLPEND 61
Query: 74 CRYAVYDYDFVTAENCQKK 92
C YA+YD+++ N K+
Sbjct: 62 CLYAIYDFEYEINGNEGKR 80
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 18/93 (19%)
Query: 14 ASGMAVHDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVIVEK-----LGEPT 59
ASG+ V+D+ F ++K +++ + ++F + + +KQ+IVE+ +G+
Sbjct: 2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIG 61
Query: 60 QTYED----FAASLPAEECRYAVYDYDFVTAEN 88
T ED F LP +CRYA+YD + T E+
Sbjct: 62 DTVEDPYTAFVKLLPLNDCRYALYDATYETKES 94
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 18/93 (19%)
Query: 14 ASGMAVHDDCKLKFLELKAKRTY---------RFIVFKIEEKQKQVIVEK-----LGEPT 59
ASG+AV D F ++K +++ + ++F + E +K +I+E+ +G+
Sbjct: 2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVG 61
Query: 60 QTYED----FAASLPAEECRYAVYDYDFVTAEN 88
QT +D F LP ++CRYA+YD + T E+
Sbjct: 62 QTVDDPYATFVKMLPDKDCRYALYDATYETKES 94
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 10 QANAASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEKLGEP-- 58
N+ASG+ V D+ F ++K K+ + ++F + +K +IVE+ E
Sbjct: 7 SGNSASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILV 66
Query: 59 -------TQTYEDFAASLPAEECRYAVYDYDFVTAEN 88
T ++ F LP ++CRYA+YD F T E+
Sbjct: 67 GDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES 103
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE 72
A SG++V D+C +L+ K++ R+++ I + QK + V+ +GE ++ F ++
Sbjct: 10 AMSGVSVADECVTALNDLRHKKS-RYVIMHIVD-QKSIAVKTIGERGANFDQFIEAIDKN 67
Query: 73 ECRYAVYDYDFVTAENCQKK 92
YA +D+++ T + + K
Sbjct: 68 VPCYAAFDFEYTTNDGPRDK 87
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 11 ANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQV--IVEKLGEPT---QTYEDF 65
+ SG+ V D+C +F LK K ++I++KIE +K V ++E E T
Sbjct: 4 GSMVSGVNVSDECIYEFNRLKVKHLNKYIIYKIENLEKIVVDVLEHDMELTSLDNIIMRI 63
Query: 66 AASLPAEECRYAVYDYDFVTAE 87
+L ECRY + D T E
Sbjct: 64 KNNLKNTECRYIIADMPIPTPE 85
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE-- 72
SG+ V+D+C +F +K ++T +I+F I+ ++I+ G T T + S+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCGWIIFVIQ--NCEIIIHSKGAST-TLTELVQSIDKNNE 61
Query: 73 -ECRYAVYD 80
+C Y V+D
Sbjct: 62 IQCAYVVFD 70
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 15 SGMAVHDDCKLKFLELKAKRT-YRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE- 72
SG+ V+D+C +F +K ++T +I+F I+ ++I+ G T T + S+
Sbjct: 5 SGIRVNDNCVTEFNNMKIRKTCXGWIIFVIQNXC-EIIIHSKGAST-TLTELVQSIDKNN 62
Query: 73 --ECRYAVYD 80
+C Y V+D
Sbjct: 63 EIQCAYVVFD 72
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAE 72
A SG+ + + + +L+ K++ R+++ I K++ V ++GE + Y D E
Sbjct: 2 AISGVTLEESVRGAIDDLRMKKS-RYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 73 ECRYAVYDYDFVTAENCQKK 92
+ Y +D+++ A + ++K
Sbjct: 61 KPCYVAFDFEYNDAGSKREK 80
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The
Red Alga, Porphyridium Purpureum R-1
Length = 496
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 14 ASGMAVHDDCKLKFLELKAK 33
A+GM V D + KF+EL+AK
Sbjct: 4 AAGMGVMSDLEKKFIELEAK 23
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 34 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFV 84
R +RF I+ K+++ ++ V++E+ + + E+ LP + R+ VY Y +V
Sbjct: 15 RKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQ-NISPEELKMELPERQPRFVVYSYKYV 72
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 34 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFV 84
R +RF I+ K+++ ++ V++E + + E+ LP + R+ VY Y +V
Sbjct: 31 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYV 88
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 34 RTYRF--------IVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFV 84
R +RF I+ K+++ ++ V++E + + E+ LP + R+ VY Y +V
Sbjct: 25 RKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,567,674
Number of Sequences: 62578
Number of extensions: 85595
Number of successful extensions: 231
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 21
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)