Query 034510
Match_columns 92
No_of_seqs 105 out of 477
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:38:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 3.8E-28 8.3E-33 165.5 10.5 80 13-92 6-85 (141)
2 KOG1735 Actin depolymerizing f 99.9 4E-25 8.6E-30 151.7 7.3 75 13-87 1-78 (146)
3 PTZ00152 cofilin/actin-depolym 99.9 1.6E-21 3.4E-26 130.7 8.1 67 13-82 1-70 (122)
4 cd00013 ADF Actin depolymerisa 99.8 5.6E-19 1.2E-23 117.1 9.9 76 15-91 1-76 (132)
5 PF00241 Cofilin_ADF: Cofilin/ 99.7 1.4E-17 3.1E-22 109.8 7.6 68 21-88 1-68 (127)
6 smart00102 ADF Actin depolymer 99.7 3.6E-17 7.8E-22 108.6 8.9 68 21-88 1-68 (127)
7 KOG1736 Glia maturation factor 99.5 5.2E-14 1.1E-18 94.9 6.3 77 14-90 5-84 (143)
8 KOG1747 Protein tyrosine kinas 97.9 4.6E-05 9.9E-10 58.3 7.4 72 14-87 172-245 (342)
9 KOG1747 Protein tyrosine kinas 95.8 0.021 4.5E-07 44.0 5.0 70 13-85 3-77 (342)
10 PF03400 DDE_Tnp_IS1: IS1 tran 72.0 8.8 0.00019 25.9 4.2 48 30-77 14-62 (131)
11 KOG3655 Drebrins and related a 67.8 24 0.00052 28.9 6.4 64 16-81 6-70 (484)
12 COG0360 RpsF Ribosomal protein 54.9 17 0.00037 24.0 3.0 30 17-46 64-95 (112)
13 PRK00453 rpsF 30S ribosomal pr 48.2 38 0.00083 21.5 3.8 30 17-46 65-96 (108)
14 cd00355 Ribosomal_L30_like Rib 39.6 32 0.00069 19.2 2.2 31 15-45 7-37 (53)
15 KOG2130 Phosphatidylserine-spe 39.4 24 0.00052 27.9 2.1 37 7-44 182-220 (407)
16 PF09654 DUF2396: Protein of u 38.6 37 0.00079 23.7 2.7 21 70-90 131-151 (161)
17 PF10632 He_PIG_assoc: He_PIG 37.2 15 0.00033 18.7 0.5 10 2-11 14-23 (29)
18 cd06535 CIDE_N_CAD CIDE_N doma 36.4 42 0.0009 20.8 2.5 33 41-75 34-66 (77)
19 PF05941 Chordopox_A20R: Chord 36.2 2.1E+02 0.0045 22.5 6.7 64 1-66 83-151 (334)
20 TIGR02652 conserved hypothetic 36.1 46 0.00099 23.3 2.9 20 71-90 134-153 (163)
21 PF02672 CP12: CP12 domain; I 34.8 16 0.00035 22.1 0.5 20 59-80 50-70 (71)
22 PF00327 Ribosomal_L30: Riboso 34.5 64 0.0014 17.9 2.9 31 15-45 9-39 (52)
23 COG2026 RelE Cytotoxic transla 33.5 60 0.0013 20.1 2.9 26 38-63 62-87 (90)
24 TIGR00053 addiction module tox 33.0 45 0.00098 20.1 2.3 19 39-59 68-86 (89)
25 KOG1975 mRNA cap methyltransfe 32.5 1.2E+02 0.0025 24.3 4.9 56 16-83 145-204 (389)
26 PF03819 MazG: MazG nucleotide 32.2 9.7 0.00021 22.6 -0.9 23 15-37 51-73 (74)
27 COG1753 Predicted antotoxin, c 31.2 54 0.0012 20.2 2.3 20 14-33 3-22 (74)
28 KOG0908 Thioredoxin-like prote 29.6 55 0.0012 25.0 2.6 23 61-83 8-30 (288)
29 PRK04968 SecY interacting prot 28.8 1.2E+02 0.0027 21.6 4.2 30 42-71 143-177 (181)
30 PF01610 DDE_Tnp_ISL3: Transpo 27.6 69 0.0015 22.6 2.8 55 28-82 4-65 (249)
31 PF07348 Syd: Syd protein (SUK 24.8 1.2E+02 0.0026 21.5 3.5 28 43-70 143-175 (176)
32 PF11238 DUF3039: Protein of u 24.7 35 0.00075 20.1 0.6 16 16-31 43-58 (58)
33 PTZ00248 eukaryotic translatio 23.2 2.4E+02 0.0052 21.9 5.1 46 29-74 63-108 (319)
34 COG1504 Uncharacterized conser 22.7 1.1E+02 0.0024 20.5 2.8 17 18-34 95-111 (121)
35 COG1692 Calcineurin-like phosp 22.3 2.2E+02 0.0048 21.6 4.7 50 36-87 98-156 (266)
36 COG4567 Response regulator con 22.0 1.1E+02 0.0024 21.9 2.8 29 60-88 40-68 (182)
37 PRK14426 acylphosphatase; Prov 21.7 1.2E+02 0.0027 18.7 2.8 36 48-84 42-78 (92)
38 PF01846 FF: FF domain; Inter 21.6 35 0.00076 18.4 0.2 19 58-77 17-35 (51)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=99.95 E-value=3.8e-28 Score=165.55 Aligned_cols=80 Identities=55% Similarity=1.063 Sum_probs=74.6
Q ss_pred cccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCcccC
Q 034510 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKK 92 (92)
Q Consensus 13 ~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~~~~ 92 (92)
++|||+|+|+|+++||+||++|.+|||||+|++++++|+|++.+.++.+|+||++.||+++|||+||||+|++++|++|+
T Consensus 6 ~~SGi~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~ 85 (141)
T PLN03216 6 ATTGMWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKS 85 (141)
T ss_pred cCCCCeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCccc
Confidence 37999999999999999999999999999999988899999877667899999999999999999999999999998764
No 2
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=99.92 E-value=4e-25 Score=151.68 Aligned_cols=75 Identities=57% Similarity=1.003 Sum_probs=71.7
Q ss_pred cccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCC---CCCceEEEEEeEeecCC
Q 034510 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLP---AEECRYAVYDYDFVTAE 87 (92)
Q Consensus 13 ~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp---~~~cRY~vyD~~y~~~d 87 (92)
|+|||+|+|+|+.+|++||.+|.||||||+|++++++|+||+.|..+.+|++|...|| .++||||+|||+|++..
T Consensus 1 ~aSGv~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~ 78 (146)
T KOG1735|consen 1 MASGVAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKE 78 (146)
T ss_pred CCcceEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeec
Confidence 4699999999999999999999999999999999999999999988999999999999 99999999999999944
No 3
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.86 E-value=1.6e-21 Score=130.68 Aligned_cols=67 Identities=33% Similarity=0.676 Sum_probs=61.4
Q ss_pred cccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCC---ceEEEEEeE
Q 034510 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE---CRYAVYDYD 82 (92)
Q Consensus 13 ~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~---cRY~vyD~~ 82 (92)
|+|||+|+++|+++|++||.+|.+|||||+|++ ++|+|++.++ ..+|++|++.||+++ |||+||||+
T Consensus 1 m~SGi~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~ 70 (122)
T PTZ00152 1 MISGIRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV 70 (122)
T ss_pred CCCCcCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC
Confidence 579999999999999999999999999999975 6899998875 569999999999998 999999983
No 4
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=99.80 E-value=5.6e-19 Score=117.08 Aligned_cols=76 Identities=47% Similarity=0.965 Sum_probs=68.4
Q ss_pred cCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCccc
Q 034510 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 91 (92)
Q Consensus 15 SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~~~ 91 (92)
|||+|+++|.++|++||.+++.+|++|+|+.+.++|++++.+....+|++|++.||+++|||++|++++.++ |+.+
T Consensus 1 sgi~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~ 76 (132)
T cd00013 1 SGIKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKK 76 (132)
T ss_pred CCceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-Cccc
Confidence 699999999999999999888999999999988899999887544689999999999999999999999876 4443
No 5
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.73 E-value=1.4e-17 Score=109.80 Aligned_cols=68 Identities=34% Similarity=0.803 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 21 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 21 de~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
|+|.++|++||.+++++||+|+|++++++|+|++.|+...+|++|++.||+++|||++|++.|+++++
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~ 68 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGS 68 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTS
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCC
Confidence 79999999999998899999999999889999998767889999999999999999999999998854
No 6
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.72 E-value=3.6e-17 Score=108.57 Aligned_cols=68 Identities=46% Similarity=0.944 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 21 DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 21 de~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
++|.++|++||++++++|+||+|+.++++|+|++++.++.+|+||++.||+++|||++|+|+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~ 68 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEES 68 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCC
Confidence 47999999999998899999999998889999998766788999999999999999999999988754
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.50 E-value=5.2e-14 Score=94.85 Aligned_cols=77 Identities=16% Similarity=0.316 Sum_probs=67.8
Q ss_pred ccCceeCHHHHHHHHHHhcc-Cc--ceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCcc
Q 034510 14 ASGMAVHDDCKLKFLELKAK-RT--YRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQ 90 (92)
Q Consensus 14 ~SGv~vsde~~~~f~~lK~~-k~--~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~~ 90 (92)
.--++|+++..+...+||.+ |. ..+||.||+.+..+||+|+.--...+-+++.+.||+++|||++|.|.++|+||+.
T Consensus 5 ~~~~~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~ 84 (143)
T KOG1736|consen 5 LVVCKIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRV 84 (143)
T ss_pred eeEEEeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcc
Confidence 33589999999999999998 43 8999999999999999994333567888999999999999999999999999975
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=97.93 E-value=4.6e-05 Score=58.30 Aligned_cols=72 Identities=11% Similarity=0.350 Sum_probs=60.8
Q ss_pred ccCc--eeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCC
Q 034510 14 ASGM--AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 87 (92)
Q Consensus 14 ~SGv--~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~d 87 (92)
++|| .|+++..++.++|+-++ +.||+|.|+-.+..|.+.+.. ...+..|+...+|.+.|||..|-|..++..
T Consensus 172 l~Gva~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~-~~~e~sdL~s~vP~d~prY~ff~~~ht~eG 245 (342)
T KOG1747|consen 172 LQGVAFPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTD-TCTEPSDLPSRVPRDGPRYHFFLFKHTHEG 245 (342)
T ss_pred ccceeecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccC-CCCChHHhhhhcCCCCCceEEEecccccCC
Confidence 3565 46799999999999888 899999999876778887753 457899999999999999999998877654
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=95.80 E-value=0.021 Score=44.03 Aligned_cols=70 Identities=26% Similarity=0.360 Sum_probs=52.1
Q ss_pred cccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCC----CCCHHHHHhhCC-CCCceEEEEEeEeec
Q 034510 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEP----TQTYEDFAASLP-AEECRYAVYDYDFVT 85 (92)
Q Consensus 13 ~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~----~~~~~df~~~Lp-~~~cRY~vyD~~y~~ 85 (92)
-++||.-+.+..+.|++=|-+| .|.+.--|+++ ++.+....+. +.+|+.++..|- +.+|+|++|-.+-.+
T Consensus 3 ~QtGI~A~e~l~~~l~~~~~~k-~R~ikIvI~nE--ql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds~~ 77 (342)
T KOG1747|consen 3 HQTGIRATEALKKFLNEAKNGK-LRLIKIVIENE--QLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDSKN 77 (342)
T ss_pred cccccchHHHHHHHHHhcccCc-eEEEEEEEecc--cccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecCCC
Confidence 4689999999999999988775 78888888874 6776554433 445667766554 679999999775443
No 10
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=72.02 E-value=8.8 Score=25.86 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=37.8
Q ss_pred HhccCcceEEEEEEeCCcceEEEeeeCCC-CCCHHHHHhhCCCCCceEE
Q 034510 30 LKAKRTYRFIVFKIEEKQKQVIVEKLGEP-TQTYEDFAASLPAEECRYA 77 (92)
Q Consensus 30 lK~~k~~r~iifki~~~~~~Ivve~~~~~-~~~~~df~~~Lp~~~cRY~ 77 (92)
+..++..+||.+-++.+.++|+--..|++ ..++..|.+.|+.-+|.++
T Consensus 14 Vg~K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~~ 62 (131)
T PF03400_consen 14 VGNKKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGFI 62 (131)
T ss_pred hccCCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceEE
Confidence 34455689999999998888887777766 6789999999987776543
No 11
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=67.78 E-value=24 Score=28.88 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=45.6
Q ss_pred CceeCHHHHHHHHHHhccCc-ceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEe
Q 034510 16 GMAVHDDCKLKFLELKAKRT-YRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDY 81 (92)
Q Consensus 16 Gv~vsde~~~~f~~lK~~k~-~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~ 81 (92)
+-.=..+|.++|++..-.+. ..|+||+-+.+.+.+-+- +.....+++|++.+-...--|+....
T Consensus 6 ~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~--~s~~~~~~e~~~df~~~kv~yg~~rv 70 (484)
T KOG3655|consen 6 TTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVA--GSGEGGLEEFLGDFDSGKVMYGFCRV 70 (484)
T ss_pred ccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeee--ccccccHHHHhhhcccCceeEEEEEe
Confidence 33345679999999877665 899999998764444443 44467899999998877666666543
No 12
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=54.87 E-value=17 Score=23.98 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=26.0
Q ss_pred ceeCHHHHHHHH-HHhccCc-ceEEEEEEeCC
Q 034510 17 MAVHDDCKLKFL-ELKAKRT-YRFIVFKIEEK 46 (92)
Q Consensus 17 v~vsde~~~~f~-~lK~~k~-~r~iifki~~~ 46 (92)
+..++.+++.|+ .||+... .|++|.+.+.+
T Consensus 64 f~~~~~~i~Eler~~rin~~VlR~liik~~~~ 95 (112)
T COG0360 64 FEAEPAAIAELERLLRINEDVLRHLIIKVEKA 95 (112)
T ss_pred EEcCHHHHHHHHHHhccchhhheeeEEEechh
Confidence 788899999997 5888877 99999998875
No 13
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=48.15 E-value=38 Score=21.47 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=24.9
Q ss_pred ceeCHHHHHHHH-HHhccCc-ceEEEEEEeCC
Q 034510 17 MAVHDDCKLKFL-ELKAKRT-YRFIVFKIEEK 46 (92)
Q Consensus 17 v~vsde~~~~f~-~lK~~k~-~r~iifki~~~ 46 (92)
+..++++++.++ .||+... .||+++|+++.
T Consensus 65 f~~~~~~i~el~~~l~~~~~VlR~~~vk~~~~ 96 (108)
T PRK00453 65 FEAPPAAIAELERLFRINEDVLRFLTVKVEEA 96 (108)
T ss_pred EEeCHHHHHHHHHHhCCCCCeEEEEEEEeccc
Confidence 667899999997 5777765 99999998875
No 14
>cd00355 Ribosomal_L30_like Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=39.55 E-value=32 Score=19.24 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=26.4
Q ss_pred cCceeCHHHHHHHHHHhccCcceEEEEEEeC
Q 034510 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEE 45 (92)
Q Consensus 15 SGv~vsde~~~~f~~lK~~k~~r~iifki~~ 45 (92)
|.+..+++..+..+.|+++|.+..++.+-++
T Consensus 7 s~ig~~~~~~~tl~~LgL~k~~~~v~~~~tp 37 (53)
T cd00355 7 SLIGRPPKQRKTLKALGLRKINQTVFVKDTP 37 (53)
T ss_pred CCCCCCHHHHHHHHHcCCCcCCCEEEEeCCH
Confidence 4677899999999999999998888887654
No 15
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=39.41 E-value=24 Score=27.92 Aligned_cols=37 Identities=8% Similarity=0.242 Sum_probs=28.6
Q ss_pred cccccc--cccCceeCHHHHHHHHHHhccCcceEEEEEEe
Q 034510 7 FYLQAN--AASGMAVHDDCKLKFLELKAKRTYRFIVFKIE 44 (92)
Q Consensus 7 ~~~m~~--~~SGv~vsde~~~~f~~lK~~k~~r~iifki~ 44 (92)
|.+|+- +-+|+.|+|--..++|.|--+++ ||++|--.
T Consensus 182 WfvmGParSGtsiHIDPlgTSAWNtll~GhK-rW~LfPp~ 220 (407)
T KOG2130|consen 182 WFVMGPARSGTSIHIDPLGTSAWNTLLQGHK-RWVLFPPG 220 (407)
T ss_pred eEEecCCCCCceeEECCcchHHHHHHhhccc-eeEEcCCC
Confidence 455654 34579999999999999977764 99999744
No 16
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=38.58 E-value=37 Score=23.71 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=17.8
Q ss_pred CCCCceEEEEEeEeecCCCcc
Q 034510 70 PAEECRYAVYDYDFVTAENCQ 90 (92)
Q Consensus 70 p~~~cRY~vyD~~y~~~dg~~ 90 (92)
|+.++|+.|++|+.+.+.|.+
T Consensus 131 ~~~d~~W~VINFdlekEpG~p 151 (161)
T PF09654_consen 131 PDEDPCWQVINFDLEKEPGVP 151 (161)
T ss_pred CCCCCceeEEEeeeccCCCCc
Confidence 367899999999999888854
No 17
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=37.17 E-value=15 Score=18.73 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=8.1
Q ss_pred CCcccccccc
Q 034510 2 GNSFLFYLQA 11 (92)
Q Consensus 2 ~~~~~~~~m~ 11 (92)
||-|||++++
T Consensus 14 g~pfl~~Ipa 23 (29)
T PF10632_consen 14 GSPFLFTIPA 23 (29)
T ss_pred CCcEEEEeec
Confidence 7889998766
No 18
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=36.40 E-value=42 Score=20.85 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=22.5
Q ss_pred EEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCce
Q 034510 41 FKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECR 75 (92)
Q Consensus 41 fki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cR 75 (92)
|.+....-.|++++.|. .-+ |||...||++..-
T Consensus 34 l~l~~~~~~l~L~eDGT-eVt-EeyF~tLp~nT~l 66 (77)
T cd06535 34 LQLPCAGSRLCLYEDGT-EVT-EEYFPTLPDNTEL 66 (77)
T ss_pred hCCCCCCcEEEEecCCc-Eeh-HHHHhcCCCCcEE
Confidence 44443334677887774 446 9999999998753
No 19
>PF05941 Chordopox_A20R: Chordopoxvirus A20R protein; InterPro: IPR010267 This family consists of several Chordopoxvirus A20R proteins. The A20R protein is required for DNA replication, is associated with the processive form of the viral DNA polymerase, and directly interacts with the viral proteins encoded by the D4R, D5R, and H5R open reading frames. A20R may contribute to the assembly or stability of the multiprotein DNA replication complex [].
Probab=36.21 E-value=2.1e+02 Score=22.51 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=40.8
Q ss_pred CCCcccc--ccccccccC--ceeCHHHHHHHHHHhccC-cceEEEEEEeCCcceEEEeeeCCCCCCHHHHH
Q 034510 1 MGNSFLF--YLQANAASG--MAVHDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFA 66 (92)
Q Consensus 1 ~~~~~~~--~~m~~~~SG--v~vsde~~~~f~~lK~~k-~~r~iifki~~~~~~Ivve~~~~~~~~~~df~ 66 (92)
.||.++| +.|....|| ++|++++.++.+++=..- ..+++-|..=. +.-++|+..++..+..+++
T Consensus 83 FG~~~iY~~Gsm~elgSG~~~~i~~~~k~~~d~i~~~~~di~FlRFv~f~--~~wilED~fS~~~~p~~~L 151 (334)
T PF05941_consen 83 FGNVFIYSKGSMMELGSGNEVQIDEEMKEACDAILADYPDIEFLRFVYFK--NRWILEDAFSKYSSPIEIL 151 (334)
T ss_pred CCcEEEEECCcEEEecCCcccCCCHHHHHHHHHHHhhCCCceEEEEEEEc--CeEEEeeeccccCCHHHHH
Confidence 3777777 324444566 677899999999876554 44555555443 4578888776655555554
No 20
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=36.06 E-value=46 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=17.3
Q ss_pred CCCceEEEEEeEeecCCCcc
Q 034510 71 AEECRYAVYDYDFVTAENCQ 90 (92)
Q Consensus 71 ~~~cRY~vyD~~y~~~dg~~ 90 (92)
+.++||.|++|+.+.+.|.+
T Consensus 134 ~~~~~W~VINFdlekEpG~p 153 (163)
T TIGR02652 134 KQDPRWAVINFELEKEPGAP 153 (163)
T ss_pred CCCCceeEEEeEeecCCCCC
Confidence 57899999999999888854
No 21
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=34.84 E-value=16 Score=22.10 Aligned_cols=20 Identities=45% Similarity=0.845 Sum_probs=15.9
Q ss_pred CCCHHHHHhhCC-CCCceEEEEE
Q 034510 59 TQTYEDFAASLP-AEECRYAVYD 80 (92)
Q Consensus 59 ~~~~~df~~~Lp-~~~cRY~vyD 80 (92)
..+++.|++.=| ..+|| |||
T Consensus 50 ~~~lE~yC~~nPea~Ecr--vYd 70 (71)
T PF02672_consen 50 KTPLELYCDENPEADECR--VYD 70 (71)
T ss_dssp TTCHHHHHHHSTTSTTTT--TS-
T ss_pred CCHHHHHHHHCCCcHHhh--hcc
Confidence 568999999999 47898 554
No 22
>PF00327 Ribosomal_L30: Ribosomal protein L30p/L7e; InterPro: IPR016082 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L30 is one of the proteins from the large ribosomal subunit. L30 belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups bacteria and archaea L30, yeast mitochondrial L33, and Drosophila melanogaster, Dictyostelium discoideum (Slime mold), fungal and mammalian L7 ribosomal proteins. L30 from bacteria are small proteins of about 60 residues, those from archaea are proteins of about 150 residues, and eukaryotic L7 are proteins of about 250 to 270 residues. This entry represents a domain with a ferredoxin-like fold, with a core structure consisting of core: beta-alpha-beta-alpha-beta. This domain is found in prokaryotic ribosomal protein L30 (short-chain member of the family), as well as in archaeal L30 (L30a) (long-chain member of the family), the later containing an additional C-terminal (sub)domain).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3DF2_Y 3DF4_Y 3O5H_G 3O58_G 1S1I_F 3IZS_e 1M1K_X 1M90_X 1QVG_V 1YIT_W ....
Probab=34.46 E-value=64 Score=17.85 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=24.8
Q ss_pred cCceeCHHHHHHHHHHhccCcceEEEEEEeC
Q 034510 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEE 45 (92)
Q Consensus 15 SGv~vsde~~~~f~~lK~~k~~r~iifki~~ 45 (92)
|-+.+++...+..+.|+++|.+..++.+-++
T Consensus 9 s~~g~~~~~~~tl~~LgL~k~~~~v~~~~t~ 39 (52)
T PF00327_consen 9 SPIGAPPKVRKTLKALGLRKINQAVFVKNTP 39 (52)
T ss_dssp -STTSSHHHHHHHHHTT-SSTTEEEEEESSH
T ss_pred CCCCCCHHHHHHHHHcCCCcCCCEEEEECCH
Confidence 4678899999999999999998888877543
No 23
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=33.48 E-value=60 Score=20.08 Aligned_cols=26 Identities=23% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEEEeCCcceEEEeeeCCCCCCHH
Q 034510 38 FIVFKIEEKQKQVIVEKLGEPTQTYE 63 (92)
Q Consensus 38 ~iifki~~~~~~Ivve~~~~~~~~~~ 63 (92)
-|||.|+++...|.|-..+.++..|.
T Consensus 62 RlIy~i~d~~~~V~v~~v~~r~~~y~ 87 (90)
T COG2026 62 RLIYEIDDETLTVLVLKVGHRERIYK 87 (90)
T ss_pred EEEEEEECCceEEEEEEEechhhhhh
Confidence 47999999877777777665555443
No 24
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=32.97 E-value=45 Score=20.07 Aligned_cols=19 Identities=21% Similarity=0.698 Sum_probs=14.2
Q ss_pred EEEEEeCCcceEEEeeeCCCC
Q 034510 39 IVFKIEEKQKQVIVEKLGEPT 59 (92)
Q Consensus 39 iifki~~~~~~Ivve~~~~~~ 59 (92)
|||.++++. |+|-..|..+
T Consensus 68 iiy~i~~~~--I~vi~ig~r~ 86 (89)
T TIGR00053 68 LIYKVKDDT--LIFVRLGHHS 86 (89)
T ss_pred EEEEECCCE--EEEEEeCchH
Confidence 899998753 8887777543
No 25
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=32.46 E-value=1.2e+02 Score=24.26 Aligned_cols=56 Identities=18% Similarity=0.443 Sum_probs=37.1
Q ss_pred CceeC----HHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEe
Q 034510 16 GMAVH----DDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF 83 (92)
Q Consensus 16 Gv~vs----de~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y 83 (92)
|+.|+ .+|.+.|++|+-+.+ ++| |. .+.+. .|++.+.+.+.++..+||+=|.+++|
T Consensus 145 giDIAevSI~qa~~RYrdm~~r~~-~~~-f~------a~f~~----~Dc~~~~l~d~~e~~dp~fDivScQF 204 (389)
T KOG1975|consen 145 GIDIAEVSINQARKRYRDMKNRFK-KFI-FT------AVFIA----ADCFKERLMDLLEFKDPRFDIVSCQF 204 (389)
T ss_pred eeehhhccHHHHHHHHHHHHhhhh-ccc-ce------eEEEE----eccchhHHHHhccCCCCCcceeeeee
Confidence 45555 578899999998865 454 22 12221 25678888888988888776666554
No 26
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=32.17 E-value=9.7 Score=22.56 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=19.9
Q ss_pred cCceeCHHHHHHHHHHhccCcce
Q 034510 15 SGMAVHDDCKLKFLELKAKRTYR 37 (92)
Q Consensus 15 SGv~vsde~~~~f~~lK~~k~~r 37 (92)
.|+.+.+-.....++++.|+.|.
T Consensus 51 ~~idle~~~~~~~~K~~~R~p~~ 73 (74)
T PF03819_consen 51 LGIDLEEALERKMEKLERRYPHV 73 (74)
T ss_dssp TTSHHHHHHHHHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHHHhccCCCC
Confidence 79999999999999999887764
No 27
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=31.25 E-value=54 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=16.6
Q ss_pred ccCceeCHHHHHHHHHHhcc
Q 034510 14 ASGMAVHDDCKLKFLELKAK 33 (92)
Q Consensus 14 ~SGv~vsde~~~~f~~lK~~ 33 (92)
+--|+|+||+-....+||-+
T Consensus 3 ~kTItI~ddvYe~L~kmK~g 22 (74)
T COG1753 3 TKTITISDDVYEKLVKMKRG 22 (74)
T ss_pred cceeeecHHHHHHHHHHHcc
Confidence 44699999999999999844
No 28
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.63 E-value=55 Score=25.03 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred CHHHHHhhCCCCCceEEEEEeEe
Q 034510 61 TYEDFAASLPAEECRYAVYDYDF 83 (92)
Q Consensus 61 ~~~df~~~Lp~~~cRY~vyD~~y 83 (92)
++.||...|+....++++.||..
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta 30 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTA 30 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEe
Confidence 47899999999999999999964
No 29
>PRK04968 SecY interacting protein Syd; Provisional
Probab=28.80 E-value=1.2e+02 Score=21.62 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEeCCcceEEEeeeCCC-----CCCHHHHHhhCCC
Q 034510 42 KIEEKQKQVIVEKLGEP-----TQTYEDFAASLPA 71 (92)
Q Consensus 42 ki~~~~~~Ivve~~~~~-----~~~~~df~~~Lp~ 71 (92)
.+++...+|++|.-|.. ..+..+|++.|.+
T Consensus 143 sv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 143 SVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred EEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 34444568888877643 4678999998853
No 30
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=27.60 E-value=69 Score=22.59 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=33.7
Q ss_pred HHHhccCcce-EEEEEEeC--CcceEEEeeeCCCCCCHHHHHhhC-CC---CCceEEEEEeE
Q 034510 28 LELKAKRTYR-FIVFKIEE--KQKQVIVEKLGEPTQTYEDFAASL-PA---EECRYAVYDYD 82 (92)
Q Consensus 28 ~~lK~~k~~r-~iifki~~--~~~~Ivve~~~~~~~~~~df~~~L-p~---~~cRY~vyD~~ 82 (92)
.|++.+|.++ |++--++- +...|+---.+-...+..+|...+ |. ....+++.|..
T Consensus 4 DE~~~~~g~~~y~t~~~d~~~~~~~il~i~~~r~~~~l~~~~~~~~~~~~~~~v~~V~~Dm~ 65 (249)
T PF01610_consen 4 DEFAFRKGHRSYVTVVVDLDTDTGRILDILPGRDKETLKDFFRSLYPEEERKNVKVVSMDMS 65 (249)
T ss_pred eeeeeecCCcceeEEEEECccCCceEEEEcCCccHHHHHHHHHHhCccccccceEEEEcCCC
Confidence 4667777777 76555443 444444221232357889999988 64 35567777764
No 31
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=24.76 E-value=1.2e+02 Score=21.55 Aligned_cols=28 Identities=21% Similarity=0.549 Sum_probs=17.0
Q ss_pred EeCCcceEEEeeeCCC-----CCCHHHHHhhCC
Q 034510 43 IEEKQKQVIVEKLGEP-----TQTYEDFAASLP 70 (92)
Q Consensus 43 i~~~~~~Ivve~~~~~-----~~~~~df~~~Lp 70 (92)
+++...+|++|.-|.. ..+..+|++.|.
T Consensus 143 v~N~sGeV~LE~~G~~~~~~LA~sL~eFL~~L~ 175 (176)
T PF07348_consen 143 VDNESGEVILEQFGTKPREVLAPSLAEFLSQLE 175 (176)
T ss_dssp EETTT--EEEEETTSS-EEEEESSHHHHHHH-E
T ss_pred EECCCCeEEEEeCCCCcceehhhhHHHHHHhcC
Confidence 4444567888876643 468899998873
No 32
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.71 E-value=35 Score=20.14 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.6
Q ss_pred CceeCHHHHHHHHHHh
Q 034510 16 GMAVHDDCKLKFLELK 31 (92)
Q Consensus 16 Gv~vsde~~~~f~~lK 31 (92)
-.-|-++|++.|+.||
T Consensus 43 ~~PVCP~Ck~iye~l~ 58 (58)
T PF11238_consen 43 PFPVCPECKEIYESLR 58 (58)
T ss_pred CCCCCcCHHHHHHhcC
Confidence 3678899999999885
No 33
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=23.21 E-value=2.4e+02 Score=21.89 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=36.6
Q ss_pred HHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCc
Q 034510 29 ELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC 74 (92)
Q Consensus 29 ~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~c 74 (92)
-+|.+..-...|.+++.+++.|.+-..--...+|+++.+..+..+-
T Consensus 63 ~vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~ 108 (319)
T PTZ00248 63 LIRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKK 108 (319)
T ss_pred hcCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCE
Confidence 3678888889999999888888886654446699999999986653
No 34
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=1.1e+02 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=13.6
Q ss_pred eeCHHHHHHHHHHhccC
Q 034510 18 AVHDDCKLKFLELKAKR 34 (92)
Q Consensus 18 ~vsde~~~~f~~lK~~k 34 (92)
...+++++.||+++-+|
T Consensus 95 ~pT~EAikr~nel~~~k 111 (121)
T COG1504 95 LPTPEAIKRYNELRGKK 111 (121)
T ss_pred eCCHHHHHHHHHHhccc
Confidence 34689999999998774
No 35
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=22.26 E-value=2.2e+02 Score=21.63 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=32.1
Q ss_pred ceEEEEEEeCCcceEEEeeeCC-------CCCCHHHHHhhCCCCCce--EEEEEeEeecCC
Q 034510 36 YRFIVFKIEEKQKQVIVEKLGE-------PTQTYEDFAASLPAEECR--YAVYDYDFVTAE 87 (92)
Q Consensus 36 ~r~iifki~~~~~~Ivve~~~~-------~~~~~~df~~~Lp~~~cR--Y~vyD~~y~~~d 87 (92)
+-|.+|.++. .+|-|-.... -+.+|+.+-..|...+++ .+++||+-++..
T Consensus 98 ~G~~~f~~ng--~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~~~~~~iiVDFHAEtTS 156 (266)
T COG1692 98 KGSRIFKING--KKLAVINLMGRVFMPPALDNPFKAADKLLDEIKLGTDLIIVDFHAETTS 156 (266)
T ss_pred ceEEEEEeCC--cEEEEEEeeccccCccccCCHHHHHHHHHHhCccCCceEEEEccccchh
Confidence 6688888665 4566544321 256676665556655666 899999976543
No 36
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=22.02 E-value=1.1e+02 Score=21.87 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=23.2
Q ss_pred CCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 60 QTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 60 ~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
.+-++-+..+...-|.|+|.|.......|
T Consensus 40 ~~~~eal~~art~~PayAvvDlkL~~gsG 68 (182)
T COG4567 40 ESVEEALAAARTAPPAYAVVDLKLGDGSG 68 (182)
T ss_pred ccHHHHHHHHhcCCCceEEEEeeecCCCc
Confidence 45678888888999999999998765443
No 37
>PRK14426 acylphosphatase; Provisional
Probab=21.72 E-value=1.2e+02 Score=18.73 Aligned_cols=36 Identities=19% Similarity=-0.003 Sum_probs=23.2
Q ss_pred ceEEEeeeCCCCCCHHHHHhhCCCCCceEEEE-EeEee
Q 034510 48 KQVIVEKLGEPTQTYEDFAASLPAEECRYAVY-DYDFV 84 (92)
Q Consensus 48 ~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vy-D~~y~ 84 (92)
..|.+.=.| .....++|++.|..+.|+.+-. +.+.+
T Consensus 42 G~Vei~~~G-~~~~i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 42 GSVEVVACG-EEEQVEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred CcEEEEEEe-CHHHHHHHHHHHhcCCCCCeEEEEEEEE
Confidence 345555456 3556999999998875776644 34443
No 38
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=21.56 E-value=35 Score=18.43 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=14.9
Q ss_pred CCCCHHHHHhhCCCCCceEE
Q 034510 58 PTQTYEDFAASLPAEECRYA 77 (92)
Q Consensus 58 ~~~~~~df~~~Lp~~~cRY~ 77 (92)
...+|+++...| .++|||-
T Consensus 17 ~~s~W~~~~~~l-~~dpry~ 35 (51)
T PF01846_consen 17 PYSSWEEVKPKL-SKDPRYK 35 (51)
T ss_dssp TTSSHHHHHHHH-TTSCHHH
T ss_pred CCCcHHHHHHHH-ccCHHHH
Confidence 456899999988 7778873
Done!