Query 034510
Match_columns 92
No_of_seqs 105 out of 477
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7s_A Actin depolymerizing fa 99.9 7.6E-26 2.6E-30 151.5 10.5 82 10-91 1-82 (139)
2 2kvk_A Actin severing and dyna 99.9 9.1E-25 3.1E-29 147.6 10.5 77 12-89 1-77 (144)
3 1cfy_A Cofilin; actin-binding, 99.9 2.3E-24 7.8E-29 144.6 9.9 79 12-91 1-80 (143)
4 1vkk_A GMF-gamma, GLIA maturat 99.9 3E-24 1E-28 146.9 10.1 82 10-92 13-96 (154)
5 2i2q_A Cofilin; N-terminal ser 99.9 2.9E-24 9.8E-29 143.2 9.6 76 12-88 1-76 (137)
6 2xfa_A Actin depolymerization 99.9 5.9E-25 2E-29 148.5 6.3 80 10-91 4-89 (148)
7 1tvj_A Cofilin; ADF, actin bin 99.9 7.6E-24 2.6E-28 146.1 10.2 76 13-88 1-94 (166)
8 2lj8_A Cofilin/actin depolymer 99.9 2E-23 6.8E-28 141.1 10.8 77 11-89 8-84 (144)
9 2kd5_A ADF H, actin severing a 99.9 5.9E-23 2E-27 138.4 10.0 74 14-88 3-76 (144)
10 1cnu_A Actophorin, ADF, cofili 99.9 2.7E-22 9.1E-27 133.5 9.9 74 15-88 1-74 (137)
11 1ak6_A Destrin; actin depolyme 99.9 6.8E-24 2.3E-28 147.4 1.7 78 10-88 8-103 (174)
12 1m4j_A A6 gene product, twinfi 99.9 2.5E-22 8.7E-27 134.9 7.7 75 10-88 1-80 (142)
13 2vac_A Twinfilin-2; transferas 99.9 2E-21 7E-26 129.3 8.9 72 14-88 1-77 (134)
14 3q2b_A Pfadf1, cofilin/actin-d 99.9 6.8E-22 2.3E-26 131.0 6.4 68 12-82 2-72 (124)
15 1v6f_A MGMF-beta, GLIA maturat 99.8 1E-20 3.4E-25 128.5 10.0 77 14-91 11-89 (151)
16 3daw_B Twinfilin-1, protein A6 99.8 9E-21 3.1E-25 130.9 8.6 71 14-87 17-89 (164)
17 2w0i_A Twinfilin-2; cytoskelet 99.8 1.9E-20 6.7E-25 124.8 8.7 69 17-88 2-70 (135)
18 2d8b_A Twinfilin-1; cell-free 99.8 1.9E-20 6.3E-25 129.2 8.0 72 14-88 22-95 (166)
19 2l72_A Tgadf, actin depolymeri 99.8 9.9E-20 3.4E-24 122.8 8.6 64 13-80 22-85 (139)
20 1hqz_1 ABP1P, actin-binding pr 99.7 6.4E-18 2.2E-22 113.0 8.8 66 13-82 2-72 (141)
21 1x67_A Drebrin-like protein; c 99.7 2.3E-16 7.8E-21 106.5 8.8 70 13-84 4-79 (146)
22 1t3y_A Coactosin-like protein; 99.6 1.2E-14 4.1E-19 97.7 8.1 66 20-91 6-72 (141)
23 1wmi_A RELE, hypothetical prot 40.6 41 0.0014 18.4 3.8 24 39-62 66-89 (90)
24 3g5o_B Uncharacterized protein 38.4 27 0.00092 20.9 2.9 25 38-62 76-100 (102)
25 2ay0_A Bifunctional PUTA prote 33.5 25 0.00085 19.3 1.9 24 10-33 1-24 (58)
26 2k5j_A Uncharacterized protein 28.1 35 0.0012 19.8 2.0 23 10-32 7-29 (80)
27 2gpe_A Bifunctional protein PU 25.4 32 0.0011 17.8 1.4 24 10-33 1-24 (52)
28 1cqm_A Ribosomal protein S6; a 25.1 1.1E+02 0.0039 18.2 4.1 29 17-45 65-95 (101)
29 2khe_A Toxin RELE, toxin-like 24.7 50 0.0017 18.0 2.2 22 39-60 65-86 (89)
30 3ffv_A Protein SYD; membrane, 23.6 86 0.0029 21.4 3.6 28 43-70 146-178 (181)
31 2otr_A Hypothetical protein HP 22.9 82 0.0028 18.0 3.1 19 39-57 67-85 (98)
No 1
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=99.93 E-value=7.6e-26 Score=151.51 Aligned_cols=82 Identities=84% Similarity=1.322 Sum_probs=73.5
Q ss_pred ccccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCc
Q 034510 10 QANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 89 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~ 89 (92)
|+||+|||+++++|+++|++||.++++|||||+|++++++|+|++.++...+|+||.+.||+++|||++||++|++.+|+
T Consensus 1 ~~~~~sGi~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~ 80 (139)
T 1f7s_A 1 MANAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENC 80 (139)
T ss_dssp ----CCCCEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSC
T ss_pred CCcCccCcEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccC
Confidence 67889999999999999999999888999999999988899999988766799999999999999999999999999987
Q ss_pred cc
Q 034510 90 QK 91 (92)
Q Consensus 90 ~~ 91 (92)
++
T Consensus 81 ~~ 82 (139)
T 1f7s_A 81 QK 82 (139)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 2
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=99.92 E-value=9.1e-25 Score=147.56 Aligned_cols=77 Identities=22% Similarity=0.457 Sum_probs=71.4
Q ss_pred ccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCc
Q 034510 12 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 89 (92)
Q Consensus 12 ~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~ 89 (92)
|++|||+|+++|+++|++||.+| +|||||+|++++++|+|++.++.+.+|++|++.||+++|||++|||+|++++|.
T Consensus 1 Ma~SGv~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~~~~ 77 (144)
T 2kvk_A 1 MAISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGSK 77 (144)
T ss_dssp CCCCCCEECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEETTEE
T ss_pred CCcCCcccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccCCCC
Confidence 56899999999999999999875 799999999999999999998888999999999999999999999999887763
No 3
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=99.91 E-value=2.3e-24 Score=144.59 Aligned_cols=79 Identities=29% Similarity=0.693 Sum_probs=69.4
Q ss_pred ccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC-cc
Q 034510 12 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN-CQ 90 (92)
Q Consensus 12 ~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg-~~ 90 (92)
||+|||.|+++|+++|++||.++.++||||+|++++++|+|++.++ +.+|++|++.||+++|||++||++|++.+| ++
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~ 79 (143)
T 1cfy_A 1 MSRSGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGK 79 (143)
T ss_dssp -----CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCE
T ss_pred CCcCCcEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCCCCcEEEEEEeeeecCCCccc
Confidence 5789999999999999999999999999999998888999999875 689999999999999999999999999998 65
Q ss_pred c
Q 034510 91 K 91 (92)
Q Consensus 91 ~ 91 (92)
|
T Consensus 80 ~ 80 (143)
T 1cfy_A 80 R 80 (143)
T ss_dssp E
T ss_pred c
Confidence 4
No 4
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=99.91 E-value=3e-24 Score=146.86 Aligned_cols=82 Identities=17% Similarity=0.346 Sum_probs=71.0
Q ss_pred ccccccCceeCHHHHHHHHHHhccC--cceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCC
Q 034510 10 QANAASGMAVHDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 87 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~k--~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~d 87 (92)
|+.++||+.|+++|+++|++||.+| .++||||+|++++++|+|++.++ +.+|++|++.||+++|||++|||+|++++
T Consensus 13 ~~~~~~~~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~-~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~ 91 (154)
T 1vkk_A 13 MSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVHDD 91 (154)
T ss_dssp -----CCCEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEE-SCCHHHHHHHSCSSSCEEEEEECCEECTT
T ss_pred ccccccceeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCC-CCCHHHHHHhCCCCCcEEEEEEeeeccCC
Confidence 6778899999999999999999987 59999999999888999998653 67899999999999999999999999999
Q ss_pred CcccC
Q 034510 88 NCQKK 92 (92)
Q Consensus 88 g~~~~ 92 (92)
|++++
T Consensus 92 g~~~~ 96 (154)
T 1vkk_A 92 GRVSY 96 (154)
T ss_dssp SCEEC
T ss_pred Ccccc
Confidence 87653
No 5
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.9e-24 Score=143.21 Aligned_cols=76 Identities=34% Similarity=0.777 Sum_probs=70.6
Q ss_pred ccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 12 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 12 ~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
||+|||.|+++|+++|++||.++.++||+|+|++++++|++++ +..+.+|++|++.||+++|||++|||+|++.+|
T Consensus 1 ~~~sGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~ 76 (137)
T 2i2q_A 1 MSFSGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG 76 (137)
T ss_dssp -CCSCCEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS
T ss_pred CCCCCcccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC
Confidence 5789999999999999999999889999999998888999988 556789999999999999999999999999987
No 6
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=99.91 E-value=5.9e-25 Score=148.50 Aligned_cols=80 Identities=29% Similarity=0.544 Sum_probs=70.1
Q ss_pred ccccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEe------eeCCCCCCHHHHHhhCCCCCceEEEEEeEe
Q 034510 10 QANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVE------KLGEPTQTYEDFAASLPAEECRYAVYDYDF 83 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve------~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y 83 (92)
|+ |+|||.++++|+++|++||.++.+|||||+| +++++|+|+ +.++.+.+|++|++.||+++|||++|||+|
T Consensus 4 ms-m~sGi~v~~e~~~af~~~k~~k~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~ 81 (148)
T 2xfa_A 4 GS-MVSGVNVSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPI 81 (148)
T ss_dssp ---CCCCCEECHHHHHHHHHHHTSCCCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEE
T ss_pred cc-ccCCCeeCHHHHHHHHHHHCCCceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEeccc
Confidence 56 6799999999999999999999999999999 556899998 555435789999999999999999999999
Q ss_pred ecCCCccc
Q 034510 84 VTAENCQK 91 (92)
Q Consensus 84 ~~~dg~~~ 91 (92)
++++|+++
T Consensus 82 ~~~~g~~~ 89 (148)
T 2xfa_A 82 PTPEGVLR 89 (148)
T ss_dssp CCSSCCCE
T ss_pred ccCCCCcc
Confidence 99999765
No 7
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=99.90 E-value=7.6e-24 Score=146.14 Aligned_cols=76 Identities=34% Similarity=0.704 Sum_probs=69.3
Q ss_pred cccCceeCHHHHHHHHHHhccC---------cceEEEEEEeCCcceEEEee--------eCCC-CCCHHHHHhhCCCCCc
Q 034510 13 AASGMAVHDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVIVEK--------LGEP-TQTYEDFAASLPAEEC 74 (92)
Q Consensus 13 ~~SGv~vsde~~~~f~~lK~~k---------~~r~iifki~~~~~~Ivve~--------~~~~-~~~~~df~~~Lp~~~c 74 (92)
|+|||+|+++|+++|++||.+| .+|||||+|++++++|+|++ .+++ +.+|++|++.||+++|
T Consensus 1 m~SGi~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~p 80 (166)
T 1tvj_A 1 MASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDC 80 (166)
T ss_dssp CCCCCEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSC
T ss_pred CCCCCeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCc
Confidence 5799999999999999999997 48999999999889999997 3433 6789999999999999
Q ss_pred eEEEEEeEeecCCC
Q 034510 75 RYAVYDYDFVTAEN 88 (92)
Q Consensus 75 RY~vyD~~y~~~dg 88 (92)
||++|||+|++++|
T Consensus 81 rY~vy~~~~~~~~~ 94 (166)
T 1tvj_A 81 RYALYDATYETKES 94 (166)
T ss_dssp EEEEEEEEEEESSC
T ss_pred EEEEEeccccCCCC
Confidence 99999999999987
No 8
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=99.90 E-value=2e-23 Score=141.09 Aligned_cols=77 Identities=25% Similarity=0.575 Sum_probs=68.8
Q ss_pred cccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCc
Q 034510 11 ANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENC 89 (92)
Q Consensus 11 ~~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~ 89 (92)
.|++|||+|+|||+++|++||.+| +|||||+|+++ ++++|+..+..+.+|++|++.||+++|||++|||.+++++|.
T Consensus 8 ~Ma~SGi~vsde~~~af~~lk~~k-~~~ii~~i~d~-~~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~~ 84 (144)
T 2lj8_A 8 HMAMSGVSVADECVTALNDLRHKK-SRYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDGP 84 (144)
T ss_dssp -CCCSSCEECHHHHHHHHHHTTTS-SSEEEEEEETT-TEEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSSS
T ss_pred ccccCCceeCHHHHHHHHHHhcCC-ceEEEEEEECC-cEEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCCC
Confidence 355799999999999999999775 79999999976 678888888788999999999999999999999999998874
No 9
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=99.89 E-value=5.9e-23 Score=138.38 Aligned_cols=74 Identities=22% Similarity=0.487 Sum_probs=69.8
Q ss_pred ccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 14 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 14 ~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
+|||+|+++|+++|++||.++ ++||+|+|++++++|+|++.+..+.+|++|++.||+++|||++|+|+|++++|
T Consensus 3 ~SGi~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~ 76 (144)
T 2kd5_A 3 ISGVTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGS 76 (144)
T ss_dssp CCSCBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSSC
T ss_pred ccCCCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCCC
Confidence 499999999999999999998 99999999988889999998877889999999999999999999999999885
No 10
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=99.88 E-value=2.7e-22 Score=133.49 Aligned_cols=74 Identities=46% Similarity=0.914 Sum_probs=69.6
Q ss_pred cCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 15 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 15 SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
|||.|+++|+++|++||.++.++||+|+|++++++|++++.++.+.+|++|++.||+++|||++|+|++++.+|
T Consensus 1 SGi~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~ 74 (137)
T 1cnu_A 1 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG 74 (137)
T ss_dssp -CCEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE
T ss_pred CCCccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC
Confidence 79999999999999999998899999999998889999998866789999999999999999999999999887
No 11
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=99.88 E-value=6.8e-24 Score=147.42 Aligned_cols=78 Identities=33% Similarity=0.638 Sum_probs=69.6
Q ss_pred ccccccCceeCHHHHHHHHHHhccC---------cceEEEEEEeCCcceEEEeee--------CCC-CCCHHHHHhhCCC
Q 034510 10 QANAASGMAVHDDCKLKFLELKAKR---------TYRFIVFKIEEKQKQVIVEKL--------GEP-TQTYEDFAASLPA 71 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~k---------~~r~iifki~~~~~~Ivve~~--------~~~-~~~~~df~~~Lp~ 71 (92)
|+ |+|||+|+++|+++|++||.+| .+|||||+|++++++|+|++. +++ +.+|++|++.||+
T Consensus 8 m~-m~SGi~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~ 86 (174)
T 1ak6_A 8 GN-SASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 86 (174)
T ss_dssp ST-TTTCCCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCS
T ss_pred cc-ccCCCccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCC
Confidence 44 7899999999999999999995 589999999998889999873 322 6789999999999
Q ss_pred CCceEEEEEeEeecCCC
Q 034510 72 EECRYAVYDYDFVTAEN 88 (92)
Q Consensus 72 ~~cRY~vyD~~y~~~dg 88 (92)
++|||++|||+|++++|
T Consensus 87 ~~prY~ly~~~~~~~~~ 103 (174)
T 1ak6_A 87 KDCRYALYDASFETKES 103 (174)
T ss_dssp SCCCCEECCCCCCCSSC
T ss_pred CCcEEEEEeCcccCCCC
Confidence 99999999999999887
No 12
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=99.87 E-value=2.5e-22 Score=134.86 Aligned_cols=75 Identities=23% Similarity=0.477 Sum_probs=61.6
Q ss_pred ccccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCC----CHHHHHhhC-CCCCceEEEEEeEee
Q 034510 10 QANAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQ----TYEDFAASL-PAEECRYAVYDYDFV 84 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~----~~~df~~~L-p~~~cRY~vyD~~y~ 84 (92)
|+ |+|||.|+++|+++|++||.+| +|||||+|+++ +|+|++.++... +|++|++.| |+++||||||||+++
T Consensus 1 Ms-m~SGi~v~~e~~~~f~~~k~~k-~~~ii~~i~~~--~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~ 76 (142)
T 1m4j_A 1 MS-HQTGIQASEDVKEIFARARNGK-YRLLKISIENE--QLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQ 76 (142)
T ss_dssp -------CCBCHHHHHHHHHHHTTT-CSEEEEEECSS--SEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEE
T ss_pred CC-CcCCCeECHHHHHHHHHHhcCC-eEEEEEEEcCC--EEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcC
Confidence 45 5799999999999999999998 99999999774 899998876553 478999998 799999999999999
Q ss_pred cCCC
Q 034510 85 TAEN 88 (92)
Q Consensus 85 ~~dg 88 (92)
+.+|
T Consensus 77 ~~~~ 80 (142)
T 1m4j_A 77 NAQG 80 (142)
T ss_dssp ETTE
T ss_pred CCCC
Confidence 8875
No 13
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=129.34 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=64.3
Q ss_pred ccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCC----CHHHHHhhC-CCCCceEEEEEeEeecCCC
Q 034510 14 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQ----TYEDFAASL-PAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 14 ~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~----~~~df~~~L-p~~~cRY~vyD~~y~~~dg 88 (92)
+|||+|+++|+++|++||.+| +|||||+|+++ +|+|++.++... +|++|++.| |+++||||||||++++.+|
T Consensus 1 ~SGi~v~~e~~~~f~~~k~~k-~r~ii~~i~~~--~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~~ 77 (134)
T 2vac_A 1 SMGIHATEELKEFFAKARAGS-VRLIKVVIEDE--QLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQG 77 (134)
T ss_dssp CCSCEECHHHHHHHHHHHHSS-CSEEEEEEETT--EEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETTE
T ss_pred CCCcEeCHHHHHHHHHHhcCC-eEEEEEEecCC--EEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCCC
Confidence 589999999999999999998 99999999874 899999876553 478999998 6999999999999998875
No 14
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=99.85 E-value=6.8e-22 Score=130.98 Aligned_cols=68 Identities=28% Similarity=0.616 Sum_probs=61.2
Q ss_pred ccccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCC---ceEEEEEeE
Q 034510 12 NAASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEE---CRYAVYDYD 82 (92)
Q Consensus 12 ~~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~---cRY~vyD~~ 82 (92)
+|+|||+|+++|+++|++||.+|++|||+|+|++ ++|+|++.++ +.+|++|++.||+++ |||+||||.
T Consensus 2 ~m~SGi~vs~e~~~~f~~lk~~k~~~~ii~kI~~--~~ivv~~~~~-~~~~~~f~~~Lp~~~~~~prY~vy~~~ 72 (124)
T 3q2b_A 2 SMISGIRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGA-STTLTELVQSIDKNNEIQCAYVVFDAV 72 (124)
T ss_dssp --CCSCEECHHHHHHHHHHHHHTSSEEEEEEEET--TEEEEEEEEE-CSCHHHHHHHHHHCTTCSEEEEEEECS
T ss_pred CCCCCCccCHHHHHHHHHHhcCCCcEEEEEEEcC--CEEEEeccCC-CCCHHHHHHHccccCCCCcEEEEEecC
Confidence 4679999999999999999999999999999998 4899998874 589999999999999 999999983
No 15
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=99.84 E-value=1e-20 Score=128.54 Aligned_cols=77 Identities=18% Similarity=0.353 Sum_probs=69.5
Q ss_pred ccCceeCHHHHHHHHHHhccC--cceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCccc
Q 034510 14 ASGMAVHDDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 91 (92)
Q Consensus 14 ~SGv~vsde~~~~f~~lK~~k--~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~~~ 91 (92)
...+.|+++|+++|++||.+| .++||||+|++++++|+|++.++ +.+|++|++.||+++|||++|||+|++++|+.+
T Consensus 11 ~~~~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~-~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~ 89 (151)
T 1v6f_A 11 LVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQHDDGRVS 89 (151)
T ss_dssp CCCCEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEE-SCCHHHHGGGSCSSSCEEEEEECCEECTTSCEE
T ss_pred ceEEEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCC-CCCHHHHHhhCCCCCceEEEEecccccCCCccc
Confidence 346999999999999999987 59999999999888999998763 678999999999999999999999999998754
No 16
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=99.84 E-value=9e-21 Score=130.95 Aligned_cols=71 Identities=17% Similarity=0.403 Sum_probs=64.7
Q ss_pred ccCc--eeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCC
Q 034510 14 ASGM--AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE 87 (92)
Q Consensus 14 ~SGv--~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~d 87 (92)
++|| .|+++|+++|++||.++ ++||||+|++++++|+|++. .+.+|++|.+.||+++|||+||||+|++++
T Consensus 17 ~~gv~~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~--~~~~~~df~~~Lp~~~pRY~vyd~~~~~~g 89 (164)
T 3daw_B 17 LQGVAFPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANT--ENTELRDLPKRIPKDSARYHFFLYKHSHEG 89 (164)
T ss_dssp -CCCCCCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEEC--CCCCGGGSGGGSCSSSCEEEEEEEEEEETT
T ss_pred cCcceEEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeC--CCCCHHHHHHhCCccCceEEEEecccccCC
Confidence 5677 79999999999999984 89999999998899999986 468999999999999999999999998874
No 17
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=124.84 Aligned_cols=69 Identities=14% Similarity=0.358 Sum_probs=64.5
Q ss_pred ceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 17 MAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 17 v~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
|.|+++|+++|++||.++ ++||||+|++++++|+|++.+ +.+|++|.+.||+++|||++|||+|++++|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~ 70 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPRDAARYHFFLYKHTHEGD 70 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCSSSCEEEEEEEEEEETTE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCCCCcEEEEEecccccCCC
Confidence 679999999999999988 999999999988899999875 679999999999999999999999998876
No 18
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=99.82 E-value=1.9e-20 Score=129.23 Aligned_cols=72 Identities=18% Similarity=0.409 Sum_probs=67.6
Q ss_pred ccCce--eCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCC
Q 034510 14 ASGMA--VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAEN 88 (92)
Q Consensus 14 ~SGv~--vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg 88 (92)
+|||. |+++|+++|++||.+ .++||||+|++++++|+|++.+ +.+|++|.+.||+++|||++|||+|++++|
T Consensus 22 ~sgv~~~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~ 95 (166)
T 2d8b_A 22 LQGVAFPISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPKDSARYHFFLYKHSHEGD 95 (166)
T ss_dssp SCCCCCCBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCSSCCEEEEEEEEEEETTE
T ss_pred cCCcccCcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCCCCceEEEEeccccCCCC
Confidence 59999 999999999999998 7999999999988999999875 678999999999999999999999999887
No 19
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=99.81 E-value=9.9e-20 Score=122.82 Aligned_cols=64 Identities=47% Similarity=0.917 Sum_probs=60.2
Q ss_pred cccCceeCHHHHHHHHHHhccCcceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEE
Q 034510 13 AASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYD 80 (92)
Q Consensus 13 ~~SGv~vsde~~~~f~~lK~~k~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD 80 (92)
|+|||.++++|+++|++||.++++|||+|+|++ ++|+|++.++ + +|++|++.||+++|||++||
T Consensus 22 m~sGi~vs~e~~~af~~lk~~k~~~~ii~~I~~--~eivv~~~g~-~-~~~el~~~Lp~~~prY~~y~ 85 (139)
T 2l72_A 22 MASGMGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGK-G-NADEFRGALPANDCRFGVYD 85 (139)
T ss_dssp CCTTCEECHHHHHHHHHHTTTTCCCEEEEEEET--TEEEEEEEES-S-HHHHHHHHCCCCSCCEEEEE
T ss_pred ccCCCCcCHHHHHHHHHHhCCCCeeEEEEEEcC--CEEEEeecCC-C-CHHHHHHhCCCCCcEEEEEc
Confidence 679999999999999999999889999999998 6799998876 5 99999999999999999999
No 20
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=99.74 E-value=6.4e-18 Score=112.96 Aligned_cols=66 Identities=12% Similarity=0.278 Sum_probs=59.3
Q ss_pred cccCceeC---HHHHHHHHHHhccC--cceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeE
Q 034510 13 AASGMAVH---DDCKLKFLELKAKR--TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYD 82 (92)
Q Consensus 13 ~~SGv~vs---de~~~~f~~lK~~k--~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~ 82 (92)
.|++|.++ ++|+++|++||.+| .++||+|+|++ +++|+|++.|+ +|++|++.||+++|||++|+++
T Consensus 2 ~m~~i~l~~~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~---~~~el~~~l~~~~~rY~~~~~~ 72 (141)
T 1hqz_1 2 ALEPIDYTTHSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS---SFHDFLQLFDETKVQYGLARVS 72 (141)
T ss_dssp -CCCCCCSTTHHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES---CHHHHHTCCCTTSCEEEEEEEC
T ss_pred cccccccCCCCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC---CHHHHHhhCCCCceEEEEEEEe
Confidence 36788885 99999999999986 79999999998 56899998874 8999999999999999999997
No 21
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=106.46 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=62.3
Q ss_pred cccCceeC-----HHHHHHHHHHhccCc-ceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEee
Q 034510 13 AASGMAVH-----DDCKLKFLELKAKRT-YRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFV 84 (92)
Q Consensus 13 ~~SGv~vs-----de~~~~f~~lK~~k~-~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~ 84 (92)
.+||..|+ ++|+++|+++|.++. +|||||+|+++.++|+|+..|+ .+|+||++.||+++|||++||++++
T Consensus 4 ~~~~m~~~l~~~~~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~--~~~~e~~~~L~~~~~~Y~~~r~~~~ 79 (146)
T 1x67_A 4 GSSGMAANLSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE--GGLEEMVEELNSGKVMYAFCRVKDP 79 (146)
T ss_dssp SSSSSCCCCCTTHHHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES--SCHHHHHHHCCTTSEEEEEEEEECS
T ss_pred cccceEEEcCCCCHHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccC--CCHHHHHhhCCCCceEEEEEEEEcC
Confidence 35777777 999999999999985 9999999998777999998874 5899999999999999999999864
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=99.56 E-value=1.2e-14 Score=97.67 Aligned_cols=66 Identities=11% Similarity=0.337 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHhccC-cceEEEEEEeCCcceEEEeeeCCCCCCHHHHHhhCCCCCceEEEEEeEeecCCCccc
Q 034510 20 HDDCKLKFLELKAKR-TYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQK 91 (92)
Q Consensus 20 sde~~~~f~~lK~~k-~~r~iifki~~~~~~Ivve~~~~~~~~~~df~~~Lp~~~cRY~vyD~~y~~~dg~~~ 91 (92)
+|+|+++|+++|..+ .++||||+++++ +|+|+..|+ .|+||++.||+++|||++||+. .+.+++.|
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~~--~i~v~~~G~---g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~ 72 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDGS--TIVPGEQGA---EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKR 72 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEETT--EEEEEEEES---SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcCC--EEEEEecCC---CHHHHHhhCCCCceEEEEEEEE-ecCCCCce
Confidence 589999999999988 499999999883 499999885 4999999999999999999995 55555443
No 23
>1wmi_A RELE, hypothetical protein PHS013; toxin-antitoxin complex, hydrolase-hydrolase inhibitor compl; 2.30A {Pyrococcus horikoshii} SCOP: d.298.1.2
Probab=40.61 E-value=41 Score=18.40 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=16.0
Q ss_pred EEEEEeCCcceEEEeeeCCCCCCH
Q 034510 39 IVFKIEEKQKQVIVEKLGEPTQTY 62 (92)
Q Consensus 39 iifki~~~~~~Ivve~~~~~~~~~ 62 (92)
|+|.++++...|.|-..+..+.-|
T Consensus 66 iiY~i~~~~~~i~i~~i~~~~~~Y 89 (90)
T 1wmi_A 66 VIYSVNWKDKVIKILKLKPRGRAY 89 (90)
T ss_dssp EEEEEETTTTEEEEEEEECSCCC-
T ss_pred EEEEEECCceEEEEEEEecccccc
Confidence 688888776667777776555444
No 24
>3g5o_B Uncharacterized protein RV2866; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=38.40 E-value=27 Score=20.90 Aligned_cols=25 Identities=12% Similarity=0.543 Sum_probs=16.0
Q ss_pred EEEEEEeCCcceEEEeeeCCCCCCH
Q 034510 38 FIVFKIEEKQKQVIVEKLGEPTQTY 62 (92)
Q Consensus 38 ~iifki~~~~~~Ivve~~~~~~~~~ 62 (92)
-|||.|+++...|.|-..|.++.-|
T Consensus 76 RiIY~i~~~~~~I~vv~Ig~R~~vY 100 (102)
T 3g5o_B 76 RLLYRIDDEHTTVVILRVDHRADIY 100 (102)
T ss_dssp EEEEEEETTTTEEEEEEEEEC----
T ss_pred EEEEEEeCCeEEEEEEEEechHHhc
Confidence 4689999876677777777665444
No 25
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=33.52 E-value=25 Score=19.29 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=17.9
Q ss_pred ccccccCceeCHHHHHHHHHHhcc
Q 034510 10 QANAASGMAVHDDCKLKFLELKAK 33 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~ 33 (92)
|+|..-+|.++++..+.++.+-..
T Consensus 1 M~~~~~svrL~~el~~rL~~lA~~ 24 (58)
T 2ay0_A 1 MGTTTMGVMLDDATRERIKSAATR 24 (58)
T ss_dssp --CEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcceEeECCHHHHHHHHHHHHH
Confidence 455556899999999999887654
No 26
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=28.14 E-value=35 Score=19.83 Aligned_cols=23 Identities=4% Similarity=0.026 Sum_probs=18.7
Q ss_pred ccccccCceeCHHHHHHHHHHhc
Q 034510 10 QANAASGMAVHDDCKLKFLELKA 32 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~ 32 (92)
|+|+.-+|.++++..+.++.+-.
T Consensus 7 m~m~risI~Lpdel~~~Ld~la~ 29 (80)
T 2k5j_A 7 IDMGRILLDLSNEVIKQLDDLEV 29 (80)
T ss_dssp TTCCEEEEEECHHHHHHHHHHHH
T ss_pred ceeEEEEEECCHHHHHHHHHHHH
Confidence 45556789999999999998764
No 27
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=25.43 E-value=32 Score=17.82 Aligned_cols=24 Identities=8% Similarity=0.239 Sum_probs=17.4
Q ss_pred ccccccCceeCHHHHHHHHHHhcc
Q 034510 10 QANAASGMAVHDDCKLKFLELKAK 33 (92)
Q Consensus 10 m~~~~SGv~vsde~~~~f~~lK~~ 33 (92)
|+|..-+|.++++..+.++.+-..
T Consensus 1 M~~~~~sirl~~~l~~~l~~lA~~ 24 (52)
T 2gpe_A 1 MGTTTMGVKLDDATRERIKSAATR 24 (52)
T ss_dssp -CEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CCcceEEEECCHHHHHHHHHHHHH
Confidence 444455799999999999887543
No 28
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=25.09 E-value=1.1e+02 Score=18.20 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=24.0
Q ss_pred ceeCHHHHHHHHH-HhccCc-ceEEEEEEeC
Q 034510 17 MAVHDDCKLKFLE-LKAKRT-YRFIVFKIEE 45 (92)
Q Consensus 17 v~vsde~~~~f~~-lK~~k~-~r~iifki~~ 45 (92)
+..++++++.++. ||+... .|+++.|.++
T Consensus 65 f~a~~~~i~eler~lr~~~~VlR~l~vk~~~ 95 (101)
T 1cqm_A 65 VEMPEDRVNDLARELRIRDNVRRVMVVKSQE 95 (101)
T ss_dssp EEECHHHHHHHHHHHHTSTTEEEEEEEECSS
T ss_pred EEeChHHHHHHHHHhcCCcceEEEEEEEecc
Confidence 6778999999974 888766 9999999775
No 29
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=24.68 E-value=50 Score=17.97 Aligned_cols=22 Identities=18% Similarity=0.567 Sum_probs=14.3
Q ss_pred EEEEEeCCcceEEEeeeCCCCC
Q 034510 39 IVFKIEEKQKQVIVEKLGEPTQ 60 (92)
Q Consensus 39 iifki~~~~~~Ivve~~~~~~~ 60 (92)
|+|.++++...|.|-..+.++.
T Consensus 65 iiY~i~~~~~~v~i~~i~~r~~ 86 (89)
T 2khe_A 65 LICHIQDREATVLVLRVGHARD 86 (89)
T ss_dssp EEEEEEGGGTEEEEEEEEETTT
T ss_pred EEEEEECCEEEEEEEEEcchhc
Confidence 6888887655677666654443
No 30
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=23.64 E-value=86 Score=21.40 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=19.7
Q ss_pred EeCCcceEEEeeeCCC-----CCCHHHHHhhCC
Q 034510 43 IEEKQKQVIVEKLGEP-----TQTYEDFAASLP 70 (92)
Q Consensus 43 i~~~~~~Ivve~~~~~-----~~~~~df~~~Lp 70 (92)
+++...+|++|.-|.. ..+..+|++.|.
T Consensus 146 v~N~sGeV~LE~~G~~~~~vLA~sLaeFL~~L~ 178 (181)
T 3ffv_A 146 VCNLSGEVCKETLGTRKRTHLASNLAEFLNQLK 178 (181)
T ss_dssp EETTTCCEEEEETTSSCEEEEESSHHHHHHHCE
T ss_pred EECCCCeEEEEeCCCCcceehhhCHHHHHHhCc
Confidence 4444567888876643 468999999884
No 31
>2otr_A Hypothetical protein HP0892; anti-parallel beta sheet, structural genomics, unknown funct; NMR {Helicobacter pylori}
Probab=22.88 E-value=82 Score=17.95 Aligned_cols=19 Identities=21% Similarity=0.691 Sum_probs=14.1
Q ss_pred EEEEEeCCcceEEEeeeCC
Q 034510 39 IVFKIEEKQKQVIVEKLGE 57 (92)
Q Consensus 39 iifki~~~~~~Ivve~~~~ 57 (92)
|||.++++...|.|-..+.
T Consensus 67 iiY~i~~~~~~V~i~~ig~ 85 (98)
T 2otr_A 67 LVYQIKKQENTLFLVRLGS 85 (98)
T ss_dssp EEEEEETTTTEEEEEEEEC
T ss_pred EEEEEcCCceEEEEEEeCC
Confidence 5788988766777777764
Done!