BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034511
(92 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Xylose
pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To D-Glucose
pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
Proton:xylose Symporter Xyle Bound To
6-Bromo-6-Deoxy-D-Glucose
Length = 491
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80
+A+ +L Y+AAF+ G V WV++SEIFP I+G ++A W + VS+TF
Sbjct: 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426
>pdb|4AYO|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31
pdb|4AYP|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Thiomannobioside
pdb|4AYQ|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With
Mannoimidazole
pdb|4AYR|A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase
From Caulobacter Strain K31 In Complex With Noeuromycin
Length = 447
Score = 28.9 bits (63), Expect = 0.68, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 10 FVNQDHELGLESVPALAVTGILLYIAAFSAGMGAVPWVVM---------SEIFPINIKGV 60
F + H+LGL V AL I+ A F AG V WV +++F NI+ V
Sbjct: 48 FFIEGHDLGLSLVEALDTLWIMGLDAEFQAG---VDWVKANLSFDVDGNAQVFETNIRLV 104
Query: 61 GGSLA 65
GG L+
Sbjct: 105 GGLLS 109
>pdb|2O7I|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellobiose
pdb|3I5O|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellopentaose
pdb|3I5O|B Chain B, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellopentaose
Length = 592
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 38 SAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAW---LVSYTFNFLMTWS 87
S G W++M E+ N++ +G + T F W + TF+ +++WS
Sbjct: 378 SVPYGWTDWMMMCEMIAKNLRSIGIDVKTEFPDFSVWADRMTKGTFDLIISWS 430
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGV 60
LA+TG + +SAGMG +P V ++P + G+
Sbjct: 146 LALTG---KVNPYSAGMGLMPGHVYRALYPCPLHGI 178
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGV 60
LA+TG + +SAGMG +P V ++P + G+
Sbjct: 146 LALTG---KVNPYSAGMGLMPGHVYRALYPCPLHGI 178
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGV 60
LA+TG + +SAGMG +P V ++P + G+
Sbjct: 146 LALTG---KVNPYSAGMGLMPGHVYRALYPCPLHGI 178
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGV 60
LA+TG + +SAGMG +P V ++P + G+
Sbjct: 146 LALTG---KVNPYSAGMGLMPGHVYRALYPCPLHGI 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,766,912
Number of Sequences: 62578
Number of extensions: 90787
Number of successful extensions: 257
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 38
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)