Query 034511
Match_columns 92
No_of_seqs 159 out of 1075
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:39:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 99.5 1.6E-14 3.5E-19 101.7 7.0 72 20-91 364-435 (485)
2 KOG0254 Predicted transporter 99.4 2.9E-12 6.2E-17 90.5 8.3 70 19-88 390-459 (513)
3 TIGR00887 2A0109 phosphate:H+ 98.6 1.6E-07 3.4E-12 66.3 6.1 55 32-86 400-454 (502)
4 PF00083 Sugar_tr: Sugar (and 98.6 6.8E-10 1.5E-14 76.6 -5.9 68 21-88 346-413 (451)
5 KOG0252 Inorganic phosphate tr 98.2 1.5E-06 3.2E-11 61.6 3.7 59 27-85 409-467 (538)
6 PRK10077 xylE D-xylose transpo 98.1 1.3E-05 2.8E-10 55.8 6.6 60 25-84 365-424 (479)
7 TIGR00879 SP MFS transporter, 97.9 0.00011 2.4E-09 50.2 7.7 67 23-89 382-448 (481)
8 KOG0253 Synaptic vesicle trans 97.5 0.00016 3.5E-09 50.8 3.6 50 30-80 441-490 (528)
9 TIGR01299 synapt_SV2 synaptic 97.4 0.00043 9.3E-09 51.8 5.2 46 40-85 664-709 (742)
10 TIGR00893 2A0114 d-galactonate 96.8 0.0028 6E-08 42.2 4.7 54 35-88 322-375 (399)
11 TIGR00881 2A0104 phosphoglycer 96.8 0.0049 1.1E-07 41.0 5.8 52 38-89 324-375 (379)
12 TIGR00903 2A0129 major facilit 96.6 0.0022 4.9E-08 44.0 3.2 42 43-84 299-340 (368)
13 TIGR00898 2A0119 cation transp 96.6 0.0035 7.6E-08 44.1 4.2 40 42-81 428-467 (505)
14 TIGR00880 2_A_01_02 Multidrug 96.2 0.012 2.6E-07 33.5 4.4 47 42-88 69-115 (141)
15 PRK10642 proline/glycine betai 96.2 0.017 3.7E-07 40.9 5.8 43 45-87 363-405 (490)
16 TIGR00891 2A0112 putative sial 96.2 0.028 6.1E-07 37.9 6.5 50 39-88 343-392 (405)
17 PRK12307 putative sialic acid 95.9 0.024 5.3E-07 38.9 5.3 50 39-88 336-385 (426)
18 PRK10406 alpha-ketoglutarate t 95.9 0.026 5.7E-07 39.2 5.4 30 43-72 355-384 (432)
19 PRK09952 shikimate transporter 95.9 0.039 8.4E-07 38.6 6.1 46 42-87 361-407 (438)
20 cd06174 MFS The Major Facilita 95.8 0.05 1.1E-06 35.7 6.4 49 40-88 281-329 (352)
21 TIGR00900 2A0121 H+ Antiporter 95.6 0.054 1.2E-06 35.9 6.0 47 42-88 319-365 (365)
22 PRK11551 putative 3-hydroxyphe 95.6 0.023 5E-07 38.8 4.1 48 40-87 324-371 (406)
23 PRK11663 regulatory protein Uh 95.2 0.047 1E-06 38.0 4.8 45 44-88 357-401 (434)
24 PRK15075 citrate-proton sympor 95.1 0.048 1.1E-06 37.9 4.6 47 42-88 349-396 (434)
25 TIGR00887 2A0109 phosphate:H+ 95.0 0.084 1.8E-06 37.5 5.6 40 43-82 134-173 (502)
26 PRK10489 enterobactin exporter 94.8 0.094 2E-06 36.1 5.4 46 43-88 331-376 (417)
27 TIGR00890 2A0111 Oxalate/Forma 94.7 0.14 3.1E-06 34.0 5.8 47 43-89 314-360 (377)
28 TIGR00893 2A0114 d-galactonate 94.5 0.15 3.2E-06 33.9 5.5 47 42-88 100-146 (399)
29 TIGR02332 HpaX 4-hydroxyphenyl 94.3 0.067 1.4E-06 37.1 3.7 46 43-88 352-397 (412)
30 PRK03893 putative sialic acid 94.2 0.085 1.8E-06 37.0 4.0 52 37-88 379-430 (496)
31 TIGR00895 2A0115 benzoate tran 94.0 0.1 2.3E-06 34.9 4.1 47 43-89 124-170 (398)
32 KOG0255 Synaptic vesicle trans 93.7 0.2 4.3E-06 35.7 5.2 46 35-81 418-463 (521)
33 TIGR00895 2A0115 benzoate tran 93.6 0.17 3.6E-06 33.9 4.5 41 41-81 355-395 (398)
34 PRK15462 dipeptide/tripeptide 93.1 0.22 4.7E-06 36.1 4.6 47 43-89 119-167 (493)
35 TIGR00903 2A0129 major facilit 93.0 0.31 6.7E-06 33.5 5.1 48 43-90 97-144 (368)
36 PRK11102 bicyclomycin/multidru 92.9 0.41 8.8E-06 32.3 5.5 46 43-88 98-143 (377)
37 TIGR00711 efflux_EmrB drug res 92.7 0.16 3.4E-06 35.4 3.4 48 41-88 107-154 (485)
38 TIGR00900 2A0121 H+ Antiporter 92.3 0.48 1.1E-05 31.3 5.3 47 42-88 110-156 (365)
39 PRK12382 putative transporter; 92.2 0.71 1.5E-05 31.5 6.0 47 43-89 321-367 (392)
40 TIGR00710 efflux_Bcr_CflA drug 92.1 0.43 9.4E-06 32.0 4.9 46 43-88 112-157 (385)
41 PRK12307 putative sialic acid 92.0 0.36 7.8E-06 33.2 4.5 46 43-88 125-170 (426)
42 PRK11273 glpT sn-glycerol-3-ph 92.0 0.47 1E-05 33.2 5.1 43 46-88 369-412 (452)
43 PRK11663 regulatory protein Uh 91.9 0.8 1.7E-05 31.9 6.1 47 43-89 130-176 (434)
44 TIGR00894 2A0114euk Na(+)-depe 91.8 0.77 1.7E-05 32.1 6.0 47 43-89 150-197 (465)
45 PRK03893 putative sialic acid 91.8 0.47 1E-05 33.3 4.8 47 42-88 126-172 (496)
46 TIGR00889 2A0110 nucleoside tr 91.7 0.65 1.4E-05 32.4 5.5 46 43-88 327-373 (418)
47 TIGR00901 2A0125 AmpG-related 91.7 0.62 1.3E-05 31.3 5.3 48 41-88 100-147 (356)
48 cd06174 MFS The Major Facilita 91.5 0.5 1.1E-05 30.9 4.6 46 43-88 106-151 (352)
49 TIGR01299 synapt_SV2 synaptic 91.5 0.66 1.4E-05 35.3 5.6 37 42-78 273-309 (742)
50 TIGR00883 2A0106 metabolite-pr 91.4 0.22 4.7E-06 33.3 2.8 47 42-88 330-377 (394)
51 PRK10213 nepI ribonucleoside t 90.8 0.79 1.7E-05 31.6 5.1 47 43-89 127-173 (394)
52 PRK15075 citrate-proton sympor 90.7 0.88 1.9E-05 31.7 5.3 32 43-74 136-167 (434)
53 PRK09556 uhpT sugar phosphate 90.1 0.84 1.8E-05 32.1 4.9 40 46-85 371-411 (467)
54 PRK11010 ampG muropeptide tran 89.8 0.94 2E-05 32.4 5.0 46 40-85 123-168 (491)
55 PF07690 MFS_1: Major Facilita 88.9 0.58 1.2E-05 30.8 3.2 47 41-87 102-148 (352)
56 PLN00028 nitrate transmembrane 88.7 1.5 3.2E-05 31.2 5.3 39 46-84 145-183 (476)
57 TIGR00899 2A0120 sugar efflux 88.6 1.9 4.2E-05 28.8 5.6 46 42-88 306-351 (375)
58 PRK05122 major facilitator sup 88.2 1.9 4.1E-05 29.4 5.5 46 43-88 321-366 (399)
59 KOG0255 Synaptic vesicle trans 88.1 2.6 5.6E-05 30.1 6.2 51 33-84 180-230 (521)
60 PRK10642 proline/glycine betai 88.1 3 6.6E-05 29.6 6.5 31 43-73 137-167 (490)
61 TIGR00891 2A0112 putative sial 88.1 2.6 5.6E-05 28.4 6.0 44 43-86 119-162 (405)
62 PRK03545 putative arabinose tr 87.9 1.4 3.1E-05 30.0 4.7 46 43-88 116-161 (390)
63 TIGR00792 gph sugar (Glycoside 87.5 3 6.6E-05 28.7 6.2 48 42-89 329-383 (437)
64 PRK10473 multidrug efflux syst 87.4 1.7 3.8E-05 29.5 4.9 46 43-88 110-155 (392)
65 PRK11902 ampG muropeptide tran 87.0 2 4.3E-05 29.5 5.0 50 36-85 106-155 (402)
66 TIGR02332 HpaX 4-hydroxyphenyl 86.7 2.4 5.1E-05 29.5 5.3 43 42-84 114-156 (412)
67 TIGR00886 2A0108 nitrite extru 86.7 2.9 6.4E-05 27.9 5.6 43 43-85 109-151 (366)
68 PRK11551 putative 3-hydroxyphe 86.2 1.5 3.3E-05 29.9 4.1 37 43-79 122-158 (406)
69 PRK15011 sugar efflux transpor 86.2 2.8 6.1E-05 28.7 5.4 42 46-88 327-368 (393)
70 PRK03699 putative transporter; 85.8 6.1 0.00013 27.1 6.9 42 43-84 114-155 (394)
71 PRK09952 shikimate transporter 85.7 6.1 0.00013 27.7 6.9 34 43-76 144-177 (438)
72 TIGR00712 glpT glycerol-3-phos 85.5 0.75 1.6E-05 32.1 2.3 42 47-88 368-410 (438)
73 TIGR00806 rfc RFC reduced fola 85.4 3.3 7.1E-05 30.4 5.5 56 34-90 122-179 (511)
74 PRK11195 lysophospholipid tran 85.3 2.5 5.4E-05 29.2 4.8 43 40-82 104-146 (393)
75 PF13347 MFS_2: MFS/sugar tran 85.3 8.2 0.00018 26.8 7.4 59 28-88 108-168 (428)
76 TIGR00881 2A0104 phosphoglycer 85.2 0.74 1.6E-05 30.6 2.1 36 42-77 101-136 (379)
77 PRK10406 alpha-ketoglutarate t 85.2 6.5 0.00014 27.4 6.9 30 43-72 143-172 (432)
78 PF07690 MFS_1: Major Facilita 85.1 2.7 5.8E-05 27.7 4.8 35 42-76 317-351 (352)
79 TIGR00879 SP MFS transporter, 84.8 1.4 3E-05 30.2 3.4 38 43-80 146-183 (481)
80 TIGR00897 2A0118 polyol permea 84.7 4.2 9.1E-05 28.0 5.7 41 47-88 338-378 (402)
81 PRK15403 multidrug efflux syst 84.6 3.2 7E-05 28.8 5.2 47 42-88 122-168 (413)
82 TIGR00898 2A0119 cation transp 84.4 4.8 0.0001 28.4 6.0 31 42-72 198-228 (505)
83 PRK09874 drug efflux system pr 84.4 4.5 9.6E-05 27.5 5.7 49 40-88 122-170 (408)
84 PRK10504 putative transporter; 84.0 2.5 5.3E-05 29.6 4.4 47 42-88 116-162 (471)
85 PRK15402 multidrug efflux syst 84.0 4.1 8.9E-05 27.9 5.4 46 43-88 120-165 (406)
86 COG2223 NarK Nitrate/nitrite t 83.1 2.4 5.1E-05 30.3 3.9 45 43-88 123-167 (417)
87 PRK10054 putative transporter; 82.9 4.9 0.00011 27.7 5.5 44 42-85 114-157 (395)
88 PRK10077 xylE D-xylose transpo 82.6 4.5 9.7E-05 28.3 5.2 33 43-75 139-171 (479)
89 PRK06814 acylglycerophosphoeth 82.5 5.5 0.00012 31.3 6.1 49 40-88 124-172 (1140)
90 PF03825 Nuc_H_symport: Nucleo 82.3 5 0.00011 28.2 5.3 55 33-88 311-366 (400)
91 PRK12382 putative transporter; 81.5 4.7 0.0001 27.4 4.9 44 45-88 133-176 (392)
92 TIGR00712 glpT glycerol-3-phos 81.5 7.9 0.00017 27.0 6.1 39 44-82 138-176 (438)
93 TIGR00711 efflux_EmrB drug res 81.4 12 0.00027 26.0 7.0 39 47-85 371-409 (485)
94 PRK03545 putative arabinose tr 80.8 7.2 0.00016 26.6 5.7 46 42-88 312-357 (390)
95 PRK08633 2-acyl-glycerophospho 80.6 7.5 0.00016 30.4 6.2 46 41-86 120-165 (1146)
96 TIGR00883 2A0106 metabolite-pr 80.1 13 0.00029 24.6 6.7 40 43-82 115-154 (394)
97 PRK15034 nitrate/nitrite trans 79.0 5.9 0.00013 28.6 4.9 42 43-84 146-187 (462)
98 PRK10207 dipeptide/tripeptide 78.5 6.6 0.00014 28.3 5.0 47 43-89 124-172 (489)
99 PRK08633 2-acyl-glycerophospho 77.4 10 0.00022 29.7 6.1 35 43-77 341-375 (1146)
100 PRK10504 putative transporter; 77.1 7.8 0.00017 27.1 5.0 45 44-88 373-417 (471)
101 PRK10489 enterobactin exporter 77.1 11 0.00023 26.0 5.6 44 43-86 129-172 (417)
102 TIGR00892 2A0113 monocarboxyla 77.1 1.8 3.9E-05 30.5 1.8 45 43-87 352-396 (455)
103 PRK05122 major facilitator sup 76.9 10 0.00022 25.8 5.5 46 43-88 131-176 (399)
104 PRK11646 multidrug resistance 76.6 5.2 0.00011 27.7 4.0 45 43-87 316-360 (400)
105 PRK11010 ampG muropeptide tran 76.4 10 0.00022 27.2 5.5 53 36-89 329-381 (491)
106 PRK09584 tppB putative tripept 76.1 10 0.00022 27.3 5.4 47 43-89 131-179 (500)
107 PRK11646 multidrug resistance 76.0 8.9 0.00019 26.5 5.0 42 43-84 118-159 (400)
108 TIGR00901 2A0125 AmpG-related 75.8 3.1 6.6E-05 27.9 2.6 28 42-69 327-354 (356)
109 TIGR00892 2A0113 monocarboxyla 75.5 5.4 0.00012 28.2 3.9 46 43-89 127-172 (455)
110 PRK14995 methyl viologen resis 75.5 7.1 0.00015 27.8 4.5 47 43-89 113-160 (495)
111 PF03209 PUCC: PUCC protein; 75.1 15 0.00033 26.3 5.9 62 24-85 88-150 (403)
112 TIGR00924 yjdL_sub1_fam amino 72.5 11 0.00023 27.0 4.8 43 41-83 398-440 (475)
113 TIGR00792 gph sugar (Glycoside 71.8 29 0.00064 23.8 9.1 40 46-85 121-161 (437)
114 PRK10091 MFS transport protein 71.2 8.6 0.00019 26.2 4.0 36 43-78 110-145 (382)
115 TIGR00924 yjdL_sub1_fam amino 69.8 12 0.00026 26.7 4.6 47 42-88 120-169 (475)
116 PRK09669 putative symporter Ya 68.3 38 0.00082 23.7 8.5 53 33-86 119-172 (444)
117 TIGR00894 2A0114euk Na(+)-depe 68.1 10 0.00022 26.6 3.9 42 43-85 380-421 (465)
118 TIGR02718 sider_RhtX_FptX side 68.0 28 0.00061 23.7 6.0 43 47-89 326-369 (390)
119 PF04281 Tom22: Mitochondrial 67.1 11 0.00023 22.9 3.3 22 49-70 60-81 (137)
120 PLN00028 nitrate transmembrane 66.0 11 0.00025 26.7 3.8 37 43-80 367-403 (476)
121 TIGR00710 efflux_Bcr_CflA drug 65.7 22 0.00047 23.8 5.0 39 42-81 318-356 (385)
122 PRK11462 putative transporter; 65.0 48 0.001 23.6 8.1 54 32-87 118-173 (460)
123 PRK09705 cynX putative cyanate 64.1 29 0.00063 23.8 5.5 46 43-88 311-357 (393)
124 PF11700 ATG22: Vacuole efflux 64.0 29 0.00062 25.2 5.5 49 40-88 396-444 (477)
125 TIGR00899 2A0120 sugar efflux 64.0 21 0.00046 23.8 4.7 48 41-88 104-153 (375)
126 PRK11273 glpT sn-glycerol-3-ph 63.9 26 0.00057 24.5 5.3 29 45-73 141-169 (452)
127 PRK11043 putative transporter; 62.4 29 0.00063 23.7 5.2 44 45-88 115-158 (401)
128 TIGR00788 fbt folate/biopterin 62.3 23 0.00049 25.3 4.8 57 31-88 359-415 (468)
129 TIGR01272 gluP glucose/galacto 62.1 33 0.00072 23.0 5.4 59 26-84 11-70 (310)
130 PRK09669 putative symporter Ya 61.0 39 0.00084 23.6 5.7 49 41-89 336-391 (444)
131 TIGR00885 fucP L-fucose:H+ sym 60.7 31 0.00068 24.1 5.2 38 47-84 117-154 (410)
132 TIGR00902 2A0127 phenyl propri 59.6 29 0.00063 23.7 4.8 61 26-88 296-357 (382)
133 PRK09528 lacY galactoside perm 59.2 14 0.0003 25.5 3.2 43 46-88 337-380 (420)
134 TIGR00986 3a0801s05tom22 mitoc 58.8 16 0.00036 22.3 3.1 22 49-70 58-79 (145)
135 PRK03699 putative transporter; 58.6 27 0.00059 23.9 4.5 47 41-88 311-357 (394)
136 PRK10429 melibiose:sodium symp 58.5 56 0.0012 23.2 6.2 48 42-89 342-396 (473)
137 TIGR00897 2A0118 polyol permea 57.7 25 0.00054 24.2 4.3 27 47-73 128-154 (402)
138 TIGR00886 2A0108 nitrite extru 57.5 13 0.00028 24.7 2.8 28 43-71 337-364 (366)
139 PRK09556 uhpT sugar phosphate 57.4 5.9 0.00013 27.9 1.2 39 43-81 141-179 (467)
140 PRK06814 acylglycerophosphoeth 57.2 27 0.00059 27.6 4.8 42 43-84 353-394 (1140)
141 PRK10054 putative transporter; 57.1 27 0.00058 24.1 4.3 46 43-89 317-362 (395)
142 PRK09705 cynX putative cyanate 56.1 44 0.00095 23.0 5.2 42 44-86 117-158 (393)
143 PRK11652 emrD multidrug resist 55.7 42 0.00091 22.8 5.1 43 43-85 115-157 (394)
144 TIGR00805 oat sodium-independe 55.6 38 0.00083 25.4 5.1 53 33-85 178-233 (633)
145 PF06813 Nodulin-like: Nodulin 55.1 16 0.00036 24.2 2.9 55 29-84 100-155 (250)
146 PRK09584 tppB putative tripept 55.0 38 0.00081 24.4 4.9 41 40-80 398-438 (500)
147 PRK09874 drug efflux system pr 53.3 24 0.00052 23.9 3.6 45 44-88 331-375 (408)
148 COG2814 AraJ Arabinose efflux 52.0 16 0.00034 26.1 2.5 47 42-88 119-165 (394)
149 PRK11043 putative transporter; 51.6 49 0.0011 22.6 4.9 42 43-85 315-356 (401)
150 KOG0254 Predicted transporter 51.5 41 0.00088 24.2 4.6 26 45-70 163-188 (513)
151 PRK10429 melibiose:sodium symp 50.9 87 0.0019 22.2 8.6 37 47-83 129-166 (473)
152 PTZ00207 hypothetical protein; 50.3 48 0.001 24.9 4.9 40 44-84 140-179 (591)
153 TIGR00896 CynX cyanate transpo 50.2 75 0.0016 21.2 6.0 40 45-85 108-147 (355)
154 PF06609 TRI12: Fungal trichot 49.0 14 0.0003 27.8 1.9 29 39-67 145-173 (599)
155 COG2211 MelB Na+/melibiose sym 48.9 1.1E+02 0.0023 22.6 7.8 56 31-88 120-177 (467)
156 PRK09848 glucuronide transport 46.0 1E+02 0.0022 21.6 5.8 47 43-89 338-391 (448)
157 COG2271 UhpC Sugar phosphate p 45.8 7.7 0.00017 28.1 0.2 52 37-88 359-411 (448)
158 PF01306 LacY_symp: LacY proto 44.6 9.4 0.0002 27.3 0.5 42 47-88 335-377 (412)
159 KOG0569 Permease of the major 44.1 24 0.00052 25.9 2.5 39 46-84 138-177 (485)
160 KOG2532 Permease of the major 43.7 61 0.0013 23.5 4.5 47 43-89 147-194 (466)
161 TIGR01301 GPH_sucrose GPH fami 43.4 81 0.0018 23.0 5.1 64 24-88 381-446 (477)
162 PF05977 MFS_3: Transmembrane 43.1 1E+02 0.0022 22.8 5.6 42 47-88 330-371 (524)
163 TIGR01301 GPH_sucrose GPH fami 43.0 1E+02 0.0022 22.6 5.5 43 32-75 123-167 (477)
164 KOG2504 Monocarboxylate transp 40.8 18 0.00039 26.4 1.5 47 43-89 153-199 (509)
165 PRK03633 putative MFS family t 38.9 1.2E+02 0.0027 20.5 6.0 48 41-88 302-349 (381)
166 PRK03633 putative MFS family t 38.4 84 0.0018 21.3 4.4 37 47-83 117-153 (381)
167 COG2271 UhpC Sugar phosphate p 37.3 17 0.00037 26.4 0.9 55 25-80 119-173 (448)
168 PF13347 MFS_2: MFS/sugar tran 36.0 1.5E+02 0.0032 20.6 7.0 47 42-88 333-386 (428)
169 TIGR00882 2A0105 oligosacchari 35.7 64 0.0014 22.0 3.5 41 48-88 331-372 (396)
170 KOG4111 Translocase of outer m 34.8 74 0.0016 19.3 3.2 13 50-62 52-64 (136)
171 PRK15034 nitrate/nitrite trans 31.7 1.6E+02 0.0034 21.5 5.0 56 33-88 353-430 (462)
172 PRK11652 emrD multidrug resist 31.6 1.7E+02 0.0036 19.9 5.3 38 42-80 317-354 (394)
173 TIGR00896 CynX cyanate transpo 31.5 1.6E+02 0.0035 19.6 5.7 38 51-88 313-350 (355)
174 PRK15462 dipeptide/tripeptide 29.6 1.9E+02 0.0042 21.2 5.2 30 38-67 391-420 (493)
175 PRK14995 methyl viologen resis 28.9 2.2E+02 0.0047 20.4 5.9 41 45-85 372-412 (495)
176 PRK15011 sugar efflux transpor 27.4 2.1E+02 0.0045 19.6 5.1 48 41-88 122-171 (393)
177 COG2814 AraJ Arabinose efflux 27.4 2.4E+02 0.0052 20.3 6.6 53 35-88 310-363 (394)
178 PRK11462 putative transporter; 27.1 2.4E+02 0.0051 20.1 5.9 48 41-88 335-389 (460)
179 PF05977 MFS_3: Transmembrane 25.4 1.2E+02 0.0025 22.4 3.5 44 42-85 121-164 (524)
180 PF08853 DUF1823: Domain of un 25.0 61 0.0013 19.1 1.7 23 49-76 92-114 (116)
181 TIGR02718 sider_RhtX_FptX side 24.6 2.3E+02 0.005 19.2 5.3 48 41-88 114-161 (390)
182 KOG1237 H+/oligopeptide sympor 24.3 2E+02 0.0044 21.6 4.6 36 51-86 485-520 (571)
183 COG2211 MelB Na+/melibiose sym 22.7 3.2E+02 0.0069 20.1 7.1 63 26-89 330-399 (467)
184 PF12555 TPPK_C: Thiamine pyro 20.7 1.3E+02 0.0028 14.9 2.3 33 50-82 4-36 (53)
185 KOG2615 Permease of the major 20.0 16 0.00035 26.4 -1.6 30 43-72 139-168 (451)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.6e-14 Score=101.65 Aligned_cols=72 Identities=29% Similarity=0.607 Sum_probs=68.1
Q ss_pred chhhHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 034511 20 ESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYGK 91 (92)
Q Consensus 20 ~~~~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~ 91 (92)
++.+|..++++++|+++|++|+||+||.+.+|++|++.|+.+++++..+||+.++++.+.||++.+..|..+
T Consensus 364 ~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~ 435 (485)
T KOG0569|consen 364 SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYV 435 (485)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 578888999999999999999999999999999999999999999999999999999999999999888543
No 2
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=90.54 Aligned_cols=70 Identities=39% Similarity=0.743 Sum_probs=65.7
Q ss_pred cchhhHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 19 LESVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 19 ~~~~~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.....+.+++.+++|...|+.|++|+||++.+|+||.|+|+++.+++..+||..++++.+.+|.+.+..+
T Consensus 390 ~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~ 459 (513)
T KOG0254|consen 390 SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG 459 (513)
T ss_pred ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567889999999999999999999999999999999999999999999999999999999999987754
No 3
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.58 E-value=1.6e-07 Score=66.29 Aligned_cols=55 Identities=20% Similarity=0.299 Sum_probs=49.6
Q ss_pred HHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 32 LYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 32 ~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
++.++++.|+++++|.+.+|++|++.|+++.+++...+|+.+++.+.++|++.+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 400 LAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred HHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 3445567889999999999999999999999999999999999999999999873
No 4
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.57 E-value=6.8e-10 Score=76.60 Aligned_cols=68 Identities=26% Similarity=0.603 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 21 SVPALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 21 ~~~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+.++..+++..++...++.|+++++|.+.+|+||++.|+++.+++..++|+.+++.+..+|++.+..+
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 413 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG 413 (451)
T ss_pred ccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566667777788899999999999999999999999999999999999999999999999887665
No 5
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.22 E-value=1.5e-06 Score=61.65 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 27 VTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 27 i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
+++..+..++.+.|++...+++++|+||+|+|+.+.+++.+++...+.+....+.++.+
T Consensus 409 ~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~ 467 (538)
T KOG0252|consen 409 VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTD 467 (538)
T ss_pred eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhh
Confidence 34555667888999999999999999999999999999999999999999999988876
No 6
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.10 E-value=1.3e-05 Score=55.81 Aligned_cols=60 Identities=38% Similarity=0.786 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 25 ~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
..+..+.++...++.+++|..+.+.+|++|++.|+++.++....+++.+.+....+|.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344456667777777888999999999999999999999999999999999999998766
No 7
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.87 E-value=0.00011 Score=50.24 Aligned_cols=67 Identities=37% Similarity=0.752 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 23 PALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 23 ~~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
.+..+....++...++.+..+..+.+.+|.+|++.|+++.++.....++.+++.....+.+.+..++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3444555666777888888999999999999999999999999999999999999999988876553
No 8
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.45 E-value=0.00016 Score=50.76 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=40.2
Q ss_pred HHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 30 ILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80 (92)
Q Consensus 30 ~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~ 80 (92)
++..-++.+ |.-.+.|+|.+|+||+.+|+.|.|.|+..+++.+.+.+.+.
T Consensus 441 lf~arafis-g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 441 LFTARAFIS-GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred HHHHHHHHh-chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 333333334 44567899999999999999999999999999999988665
No 9
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.36 E-value=0.00043 Score=51.82 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=40.3
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
+..+..+.+.+|++|++.|++++|++...+++.+.+.+.+.+.+.+
T Consensus 664 ~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 664 AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999888876654
No 10
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.81 E-value=0.0028 Score=42.21 Aligned_cols=54 Identities=24% Similarity=0.433 Sum_probs=46.4
Q ss_pred HHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 35 AAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 35 ~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+..+..|..+.+.+|.+|.|.|+++.++...+.++.+.+.....+.+.+..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 322 GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 344445678899999999999999999999999999999999998888877655
No 11
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.80 E-value=0.0049 Score=41.00 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=44.6
Q ss_pred hhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 38 SAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 38 ~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
..+..+..+.+..|..|.|.|+++.++.+..+.+...+.......+.|..|+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 324 VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 3344555677889999999999999999999999999999999999988774
No 12
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.62 E-value=0.0022 Score=44.02 Aligned_cols=42 Identities=5% Similarity=0.024 Sum_probs=37.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
+..+.+.+|++|+|.|+++.|+.+..+++.+.......+.++
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 557789999999999999999999999999988887777655
No 13
>TIGR00898 2A0119 cation transport protein.
Probab=96.61 E-value=0.0035 Score=44.14 Aligned_cols=40 Identities=10% Similarity=0.340 Sum_probs=35.5
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN 81 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p 81 (92)
.+..+.+.+|++|++.|+++.++.+..+++.+.+.+....
T Consensus 428 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 428 FQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 4677889999999999999999999999999888877665
No 14
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.25 E-value=0.012 Score=33.51 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=39.8
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+..+.+..|.+|+|.|++..++....+.+...+.....+.+.+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 115 (141)
T TIGR00880 69 LVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115 (141)
T ss_pred HHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence 46677889999999999999999999999999888887777766544
No 15
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.23 E-value=0.017 Score=40.93 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=34.6
Q ss_pred hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 87 (92)
...+.+|++|++.|+++.++.....+..+.+.+...+++.+..
T Consensus 363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~ 405 (490)
T PRK10642 363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST 405 (490)
T ss_pred HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999988778888877777777776543
No 16
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=96.17 E-value=0.028 Score=37.88 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=43.4
Q ss_pred hccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 39 AGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 39 ~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+..++.+.+.+|.+|.+.|+++.|+......+...+.......+.|..|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 343 QGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred ccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456667788999999999999999999999999999999999888766
No 17
>PRK12307 putative sialic acid transporter; Provisional
Probab=95.90 E-value=0.024 Score=38.90 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=40.4
Q ss_pred hccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 39 AGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 39 ~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.|..++.+.+..|.+|.+.|+++.|+.....++.+.+.......+.+..+
T Consensus 336 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 336 VGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred ccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 35555666778999999999999999999999988888777777666554
No 18
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.87 E-value=0.026 Score=39.20 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFG 72 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~ 72 (92)
+..+.+.+|+||+|.|+.+.|++...++..
T Consensus 355 ~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 355 SISGILKAEMFPAQVRALGVGLSYAVANAL 384 (432)
T ss_pred HHHHHHHHHHCCCCccchhhhHHHHHHHHH
Confidence 456778999999999999999999887753
No 19
>PRK09952 shikimate transporter; Provisional
Probab=95.85 E-value=0.039 Score=38.58 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=36.1
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNW-FGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~-~~~~i~~~~~p~~~~~~ 87 (92)
.+..+.+.+|.+|+|.|+.+.+++..... +.+.+.+.....+.+..
T Consensus 361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567889999999999999999877655 66777777777776643
No 20
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=95.85 E-value=0.05 Score=35.68 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=43.3
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...+....+..|..|.|.|++..++....+.+...+.......+.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~ 329 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3457888899999999999999999999999999999999888887555
No 21
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=95.64 E-value=0.054 Score=35.89 Aligned_cols=47 Identities=9% Similarity=-0.140 Sum_probs=40.9
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+....+..|..|.|.|++..++....+++...+.......+.|..|
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 319 NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46677889999999999999999999999999998888888877643
No 22
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=95.56 E-value=0.023 Score=38.79 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=41.5
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 87 (92)
+..+..+.+.+|.+|.+.|+++.++....+.+...+.+.....+.+..
T Consensus 324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 445677788999999999999999999999999999888888877653
No 23
>PRK11663 regulatory protein UhpC; Provisional
Probab=95.23 E-value=0.047 Score=38.04 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=39.2
Q ss_pred chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
......+|.+|.+.|+++.++.+..+.+...+.......+.|..|
T Consensus 357 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g 401 (434)
T PRK11663 357 LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWH 401 (434)
T ss_pred HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc
Confidence 334567999999999999999999999999999999988888655
No 24
>PRK15075 citrate-proton symporter; Provisional
Probab=95.13 E-value=0.048 Score=37.91 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=35.6
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWF-GAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~-~~~i~~~~~p~~~~~~~ 88 (92)
.+..+.+.+|.+|.+.|+.+.++...+... .+.+.+.....+.|..|
T Consensus 349 ~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 349 NGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 455667889999999999999997666654 36666777777667655
No 25
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=95.01 E-value=0.084 Score=37.51 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=32.5
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~ 82 (92)
+....+.+|.+|+|.|+++.++......+...+.....+.
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999888877776665554443
No 26
>PRK10489 enterobactin exporter EntS; Provisional
Probab=94.82 E-value=0.094 Score=36.11 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=40.5
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+.+..|..|.|.|+++.++....+.+...+.....+.+.+..|
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 4556788999999999999999999999999999999998888765
No 27
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=94.66 E-value=0.14 Score=33.97 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=40.0
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
+....+.+|.+|.+.|++..++......+...+.......+.+..|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 314 SLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred hccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 34456789999999999999999999999999999888888877663
No 28
>TIGR00893 2A0114 d-galactonate transporter.
Probab=94.47 E-value=0.15 Score=33.90 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=37.6
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus 100 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 100 FPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 (399)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence 45566789999999999999999998888888777766666655544
No 29
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=94.33 E-value=0.067 Score=37.11 Aligned_cols=46 Identities=11% Similarity=0.249 Sum_probs=39.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+....|.+|+|.|+++.++.+...++.+.+.+...+.+.+..|
T Consensus 352 ~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 352 AIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred hHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 4556777899999999999999999999999998888888777654
No 30
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.15 E-value=0.085 Score=37.03 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=41.6
Q ss_pred HhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 37 FSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 37 ~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...+..++...+.+|.+|.+.|+++.++......+...+.......+.+..|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD 430 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC
Confidence 3445555666788999999999999999999988888888877777777655
No 31
>TIGR00895 2A0115 benzoate transport.
Probab=94.00 E-value=0.1 Score=34.92 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=39.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
+....+.+|.+|.+.|+++.++......+...+.....+.+.+..++
T Consensus 124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 170 (398)
T TIGR00895 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGW 170 (398)
T ss_pred hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 56678899999999999999999998888888888877777766553
No 32
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=93.72 E-value=0.2 Score=35.74 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 35 AAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN 81 (92)
Q Consensus 35 ~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p 81 (92)
++.+.++... +.+.+|++|+.+|..+.+.+...+++.+.+...+..
T Consensus 418 ~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 418 FFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445 889999999999999999999999998888766553
No 33
>TIGR00895 2A0115 benzoate transport.
Probab=93.61 E-value=0.17 Score=33.94 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=33.7
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN 81 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p 81 (92)
..+..+.+.+|.+|.+.|+++.++......+...+......
T Consensus 355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 355 GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34667889999999999999999999998888777655443
No 34
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=93.09 E-value=0.22 Score=36.05 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=39.4
Q ss_pred cchhheecccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPIN--IKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~--~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|....+.+|+||++ .|+.+.++.....++.+++.+...+.+.+..|+
T Consensus 119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw 167 (493)
T PRK15462 119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW 167 (493)
T ss_pred ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence 44557889999986 799999999999999999999998888776653
No 35
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=92.96 E-value=0.31 Score=33.54 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=38.7
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYG 90 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~ 90 (92)
+..+...+|.+|.|.|+++.++....+.+...+....-+.+.+..||.
T Consensus 97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr 144 (368)
T TIGR00903 97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQ 144 (368)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 344556699999999999999999998888888887777777666653
No 36
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=92.88 E-value=0.41 Score=32.25 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=36.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 143 (377)
T PRK11102 98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS 143 (377)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566789999999999999999988888777777666666655444
No 37
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=92.74 E-value=0.16 Score=35.44 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=37.5
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..|....+.+|.+|.|.|+++.++......+...+.......+.+..+
T Consensus 107 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 107 LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 346677889999999999999999888888877777666666655444
No 38
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=92.35 E-value=0.48 Score=31.31 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=36.9
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.|....+.+|.+|.+.|++..++......+...+.......+.+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 156 (365)
T TIGR00900 110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG 156 (365)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566789999999999999999988888887777666666655444
No 39
>PRK12382 putative transporter; Provisional
Probab=92.15 E-value=0.71 Score=31.45 Aligned_cols=47 Identities=13% Similarity=-0.007 Sum_probs=39.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|.......|.+|.|.|+++.++.+....+.+.+.......+.+..|+
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~ 367 (392)
T PRK12382 321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY 367 (392)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44445678999999999999999999999999988888888876653
No 40
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=92.14 E-value=0.43 Score=32.01 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=36.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 112 VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455788999999999999999998888887777776666665544
No 41
>PRK12307 putative sialic acid transporter; Provisional
Probab=92.04 E-value=0.36 Score=33.18 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+....+.+|.+|.|.|+++.++......+...+.....+.+.+..+
T Consensus 125 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 4566788999999999999999887777777776666666555444
No 42
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=92.04 E-value=0.47 Score=33.24 Aligned_cols=43 Identities=14% Similarity=0.269 Sum_probs=34.7
Q ss_pred hheecccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Q 034511 46 WVVMSEIFPINIKGVGGSLATLVNWFGAWL-VSYTFNFLMTWSS 88 (92)
Q Consensus 46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i-~~~~~p~~~~~~~ 88 (92)
..+..|.+|++.|+++.|+.+....+.+.+ .+.....+.|..|
T Consensus 369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 345679999999999999999888887665 4677777777655
No 43
>PRK11663 regulatory protein UhpC; Provisional
Probab=91.93 E-value=0.8 Score=31.93 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=37.4
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
+....+.+|.+|.|.|++++++....+.+...+.......+.+..+|
T Consensus 130 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 176 (434)
T PRK11663 130 PVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW 176 (434)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 55667889999999999999999988888888777666666655543
No 44
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=91.83 E-value=0.77 Score=32.13 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=38.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW-SSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~-~~~ 89 (92)
|....+.+|.+|.+.|++..++......+...+.......+.+. .+|
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw 197 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGW 197 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45567899999999999999999998888888887777777665 354
No 45
>PRK03893 putative sialic acid transporter; Provisional
Probab=91.75 E-value=0.47 Score=33.33 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=37.2
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+....+..|.+|.|.|+++.++......+...+.......+.+..+
T Consensus 126 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 126 YGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 35566788999999999999999988888888777777666655444
No 46
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=91.74 E-value=0.65 Score=32.40 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=37.2
Q ss_pred cchhheecccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLAT-LVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~-~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+....+.+|.+|.|.|+++.++.. ..+.+...+.+.....+.+..+
T Consensus 327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 445567899999999999999997 5566788888888888887644
No 47
>TIGR00901 2A0125 AmpG-related permease.
Probab=91.71 E-value=0.62 Score=31.26 Aligned_cols=48 Identities=15% Similarity=-0.056 Sum_probs=35.9
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+....+.+|.+|.|.|+++.++......+...+.......+.+..+
T Consensus 100 ~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 100 QDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345566789999999999999999887777777766666655554443
No 48
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=91.55 E-value=0.5 Score=30.91 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=37.1
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+....+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (352)
T cd06174 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG 151 (352)
T ss_pred HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555789999999999999999998888888887777776665443
No 49
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=91.49 E-value=0.66 Score=35.29 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=28.8
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSY 78 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~ 78 (92)
.|+.+.+.+|.+|.+.|++..++......+...+...
T Consensus 273 ~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~ 309 (742)
T TIGR01299 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA 309 (742)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999988877666555554443
No 50
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=91.41 E-value=0.22 Score=33.29 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=34.8
Q ss_pred ccchhheecccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLV-NWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~-~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+..+.+.+|.+|.|.|+++.++.... +.+...+.+.....+.+..|
T Consensus 330 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 330 TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 356678899999999999999885444 44566666777777777655
No 51
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=90.77 E-value=0.79 Score=31.61 Aligned_cols=47 Identities=11% Similarity=-0.052 Sum_probs=37.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|....+.+|.+|.|.|+++.++......+...+.....+.+.+..+|
T Consensus 127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw 173 (394)
T PRK10213 127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW 173 (394)
T ss_pred HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 56667889999999999999998888877777777777776665553
No 52
>PRK15075 citrate-proton symporter; Provisional
Probab=90.66 E-value=0.88 Score=31.69 Aligned_cols=32 Identities=19% Similarity=0.009 Sum_probs=25.0
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAW 74 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~ 74 (92)
+....+.+|.+|.|.|++.+++....+++...
T Consensus 136 ~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 136 GGVSVYLAEIATPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred HHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence 34557899999999999999987776655443
No 53
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=90.06 E-value=0.84 Score=32.12 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=33.0
Q ss_pred hheecccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 034511 46 WVVMSEIFPINIKGVGGSLATLVNWF-GAWLVSYTFNFLMT 85 (92)
Q Consensus 46 ~~~~~Eifp~~~R~~~~~~~~~~~~~-~~~i~~~~~p~~~~ 85 (92)
.....|.+|.+.|+++.|+.+...++ ...+.......+.|
T Consensus 371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 35567999999999999999999887 55777777777777
No 54
>PRK11010 ampG muropeptide transporter; Validated
Probab=89.82 E-value=0.94 Score=32.38 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=37.1
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
...+....+.+|.+|.|.|+++.++......+...+.......+.+
T Consensus 123 ~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~ 168 (491)
T PRK11010 123 SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD 168 (491)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677889999999999999999998888887777666666655
No 55
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=88.90 E-value=0.58 Score=30.84 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=37.6
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 87 (92)
..+....+.+|.+|.|.|++..++......+...+.......+.+..
T Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 148 (352)
T PF07690_consen 102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF 148 (352)
T ss_dssp HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence 45667788999999999999999999998888877766666554433
No 56
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=88.72 E-value=1.5 Score=31.18 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=29.8
Q ss_pred hheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 46 WVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
..+.+|.+|.|.|+++.++......+...+.....|.+.
T Consensus 145 ~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 145 QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988777776666665556543
No 57
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=88.60 E-value=1.9 Score=28.82 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=36.3
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+....+..|..|.| |+++.++......+...+.+.....+.+..|
T Consensus 306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355667788999876 4589999988888888888888888777655
No 58
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=88.24 E-value=1.9 Score=29.39 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=35.1
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
|.......|..|.+.|+++.++.+....+...+.......+.+..|
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 366 (399)
T PRK05122 321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG 366 (399)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333456789999999999999988888887777776666666554
No 59
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=88.09 E-value=2.6 Score=30.11 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 33 YIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 33 ~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
...++..|...+.+.+.+|+++++.|+.+..+ ....|..+....-..-++.
T Consensus 180 l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~ 230 (521)
T KOG0255|consen 180 LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT 230 (521)
T ss_pred HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34455566667888999999999999999999 7777777766655444443
No 60
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=88.09 E-value=3 Score=29.62 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGA 73 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~ 73 (92)
+....+.+|.+|.|.|++..++......+..
T Consensus 137 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~ 167 (490)
T PRK10642 137 TGASIFVAEYSPDRKRGFMGSWLDFGSIAGF 167 (490)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 4566789999999999998887655443333
No 61
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=88.06 E-value=2.6 Score=28.38 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=34.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
+....+..|.+|.+.|+++.++......+...+.......+.+.
T Consensus 119 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 119 GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567789999999999999998888777777766666655544
No 62
>PRK03545 putative arabinose transporter; Provisional
Probab=87.90 E-value=1.4 Score=30.01 Aligned_cols=46 Identities=11% Similarity=-0.057 Sum_probs=34.8
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
|....+.+|.+|.|.|+++.++....+.+...+.......+.+..+
T Consensus 116 ~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g 161 (390)
T PRK03545 116 SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG 161 (390)
T ss_pred HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 4555778999999999999999888777777766665555555544
No 63
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=87.48 E-value=3 Score=28.67 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=39.3
Q ss_pred ccchhheecccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 42 GAVPWVVMSEIFP-------INIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 42 ~~i~~~~~~Eifp-------~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
.+.++.+.+|..| .|.|+...++.+....+...+.......+++..|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4677888888865 56678889999999999999999999988887653
No 64
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=87.37 E-value=1.7 Score=29.53 Aligned_cols=46 Identities=11% Similarity=0.020 Sum_probs=32.9
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+.+.+|.+|.|.|++..++......+...+.......+.+..+
T Consensus 110 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g 155 (392)
T PRK10473 110 VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP 155 (392)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4566788999999999999999888777666555544444444333
No 65
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=86.98 E-value=2 Score=29.53 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=36.7
Q ss_pred HHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 36 AFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 36 ~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
.++....|....+.+|..|.|.|+++.++....+.+...+.......+.+
T Consensus 106 ~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 106 FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33444567778899999999999999999887767666666555555444
No 66
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=86.70 E-value=2.4 Score=29.46 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=32.8
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
.|....+.+|.+|.|.|++..++......+...+.......+.
T Consensus 114 ~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 114 LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677899999999999999988877776666655555544
No 67
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=86.66 E-value=2.9 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=33.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
+....+.+|.+|.|.|++..++......+...+.....|.+.+
T Consensus 109 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 109 ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999887777777766666666554
No 68
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=86.24 E-value=1.5 Score=29.91 Aligned_cols=37 Identities=24% Similarity=0.115 Sum_probs=27.7
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYT 79 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~ 79 (92)
+....+.+|.+|.|.|+++.++......+...+....
T Consensus 122 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 122 PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999998777666555554443
No 69
>PRK15011 sugar efflux transporter B; Provisional
Probab=86.21 E-value=2.8 Score=28.74 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=33.0
Q ss_pred hheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 46 WVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+..|.+|.+ |+++.++......+...+.......+.+..+
T Consensus 327 ~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 327 MLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred HHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999976 8999999888778888888877777777554
No 70
>PRK03699 putative transporter; Provisional
Probab=85.75 E-value=6.1 Score=27.08 Aligned_cols=42 Identities=5% Similarity=0.124 Sum_probs=29.8
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
+....+.+|.+|.|.|+++.+.......+.+.+.......+.
T Consensus 114 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 114 SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677899999999999988876666555555555544444
No 71
>PRK09952 shikimate transporter; Provisional
Probab=85.72 E-value=6.1 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.017 Sum_probs=24.1
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLV 76 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~ 76 (92)
|....+.+|.+|.|.|++..+.......+...+.
T Consensus 144 ~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~ 177 (438)
T PRK09952 144 GGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS 177 (438)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4456789999999999988777665544444443
No 72
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=85.46 E-value=0.75 Score=32.06 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=33.4
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGA-WLVSYTFNFLMTWSS 88 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~-~i~~~~~p~~~~~~~ 88 (92)
....|.+|.+.|+++.|+.+..++..+ .+.+...+.+.|..|
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhcc
Confidence 457899999999999999998888765 456677777777554
No 73
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=85.44 E-value=3.3 Score=30.40 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=42.2
Q ss_pred HHHHhhcccc--chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 034511 34 IAAFSAGMGA--VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSYG 90 (92)
Q Consensus 34 ~~~~~~g~~~--i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~ 90 (92)
-+.++++-++ ....++.+.+|.+-|+++.++......+..++.....+. +...||.
T Consensus 122 R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr 179 (511)
T TIGR00806 122 EVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI 179 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch
Confidence 3344444333 445678999999999999999999999999998888887 4455544
No 74
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=85.33 E-value=2.5 Score=29.15 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=32.1
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~ 82 (92)
...|....+.+|++|.|-|+++.++......+...+....-..
T Consensus 104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447778899999999999999999877766665555444333
No 75
>PF13347 MFS_2: MFS/sugar transport protein
Probab=85.26 E-value=8.2 Score=26.82 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhccccch-hheecccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 28 TGILLYIAAFSAGMGAVP-WVVMSEIFP-INIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 28 ~~~~~~~~~~~~g~~~i~-~~~~~Eifp-~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+++..+++.- -+| ..+.+|+.+ .|.|.+..+.......+.+.+.....|.+.+..+
T Consensus 108 ~~~~l~~~~~t~~--~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g 168 (428)
T PF13347_consen 108 VFYILFDIAYTFV--QIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFG 168 (428)
T ss_pred HHHHHHHHhhhhc--cCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3444445555543 344 468999998 5789999999999999999888888888886655
No 76
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=85.18 E-value=0.74 Score=30.55 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=29.5
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVS 77 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~ 77 (92)
.|....+.+|.+|.|.|++..++......+...+..
T Consensus 101 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 136 (379)
T TIGR00881 101 WPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP 136 (379)
T ss_pred CCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence 466778899999999999999988877777766665
No 77
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=85.17 E-value=6.5 Score=27.38 Aligned_cols=30 Identities=23% Similarity=0.086 Sum_probs=22.9
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFG 72 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~ 72 (92)
|....+.+|.+|.|.|++..++........
T Consensus 143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G 172 (432)
T PRK10406 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGG 172 (432)
T ss_pred hhHHHHHHHhCCCCcccHHHHHHHHHHHHH
Confidence 667789999999999999887655444333
No 78
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=85.14 E-value=2.7 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=30.6
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLV 76 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~ 76 (92)
.+....+..|..|+|.|++..++....+.+...+.
T Consensus 317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 317 FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 57777899999999999999999999988877654
No 79
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=84.81 E-value=1.4 Score=30.15 Aligned_cols=38 Identities=29% Similarity=0.200 Sum_probs=29.9
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~ 80 (92)
+....+.+|.+|.+.|+++.++......+...+.....
T Consensus 146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999998777776666655444
No 80
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=84.70 E-value=4.2 Score=27.98 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=33.7
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...+|..| +.|+++.++.+....+.+.+.......+.+..|
T Consensus 338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35678766 579999999999999999998888888877655
No 81
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=84.64 E-value=3.2 Score=28.83 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=33.8
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+..+.+.+|.+|.|.|.+..++......+...+....-..+.+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g 168 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH 168 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566789999999999999988877777666665555555544444
No 82
>TIGR00898 2A0119 cation transport protein.
Probab=84.38 E-value=4.8 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=24.3
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFG 72 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~ 72 (92)
.+..+.+.+|.+|.+.|++..++......+.
T Consensus 198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g 228 (505)
T TIGR00898 198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG 228 (505)
T ss_pred HHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence 5678889999999999999988875444333
No 83
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=84.36 E-value=4.5 Score=27.49 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=34.0
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..|....+..|.+|.|.|+++.++......+...+.......+.+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 170 (408)
T PRK09874 122 GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG 170 (408)
T ss_pred hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345555677899999999999988877766666666555555554433
No 84
>PRK10504 putative transporter; Provisional
Probab=84.04 E-value=2.5 Score=29.60 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=34.4
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.|....+..|.+|.+.|+++.++......+...+.......+.+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g 162 (471)
T PRK10504 116 VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS 162 (471)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 35667788999999999999998887777666666555555555443
No 85
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=84.00 E-value=4.1 Score=27.90 Aligned_cols=46 Identities=17% Similarity=0.018 Sum_probs=31.7
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+....|.+|.|.|.+..++......+...+.......+.+..+
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~ 165 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP 165 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5667788999999999998888776665555555444444444434
No 86
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=83.13 E-value=2.4 Score=30.33 Aligned_cols=45 Identities=18% Similarity=0.132 Sum_probs=38.8
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+.-...++-||+|.++.+.|+.. .+++...+..++.|.+....+
T Consensus 123 av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 123 AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 334457899999999999999999 889999999999999887665
No 87
>PRK10054 putative transporter; Provisional
Probab=82.86 E-value=4.9 Score=27.71 Aligned_cols=44 Identities=14% Similarity=-0.120 Sum_probs=34.7
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
.|....+.+|..|.|.|+++.++......+...+.......+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778999999999999999988888877777666665543
No 88
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=82.63 E-value=4.5 Score=28.26 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=25.4
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWL 75 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i 75 (92)
|....+.+|.+|.|.|++.+++......+...+
T Consensus 139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~ 171 (479)
T PRK10077 139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV 171 (479)
T ss_pred hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH
Confidence 556778999999999999999876654444443
No 89
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=82.52 E-value=5.5 Score=31.32 Aligned_cols=49 Identities=6% Similarity=0.033 Sum_probs=40.6
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...|....+.+|++|.+-|++++++......+...+....-..+.+..+
T Consensus 124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~ 172 (1140)
T PRK06814 124 LFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN 172 (1140)
T ss_pred hhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3568888999999999999999999999988888887777776665544
No 90
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=82.34 E-value=5 Score=28.22 Aligned_cols=55 Identities=15% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHhhccccchhheecccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Q 034511 33 YIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNW-FGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 33 ~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~-~~~~i~~~~~p~~~~~~~ 88 (92)
+...|+.-+ .....+..|..|.|.|++++++-..... +...+.+..-..+.|..|
T Consensus 311 hG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 311 HGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred hhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 444444322 3344688999999999999999777654 667777777788887765
No 91
>PRK12382 putative transporter; Provisional
Probab=81.50 E-value=4.7 Score=27.43 Aligned_cols=44 Identities=7% Similarity=-0.235 Sum_probs=30.4
Q ss_pred hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...+..|.+|.|.|++++++..........+.....+.+.+..+
T Consensus 133 ~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 133 ALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34567899999999999998776666655555555555544444
No 92
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=81.47 E-value=7.9 Score=27.00 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=28.8
Q ss_pred chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82 (92)
Q Consensus 44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~ 82 (92)
.......|.+|.|.|+++.++......+...+.......
T Consensus 138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 344567899999999999999887777766665544443
No 93
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=81.36 E-value=12 Score=26.03 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
....|..|.|.|+++.++.+....+.+.+.......+.+
T Consensus 371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577899999999999999988888777766665554
No 94
>PRK03545 putative arabinose transporter; Provisional
Probab=80.80 E-value=7.2 Score=26.58 Aligned_cols=46 Identities=15% Similarity=0.002 Sum_probs=36.0
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
++.......|..| +.|++++++......+...+.....+.+.|..|
T Consensus 312 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g 357 (390)
T PRK03545 312 GLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG 357 (390)
T ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444556678877 688999999998888888888888888887665
No 95
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=80.65 E-value=7.5 Score=30.39 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=35.9
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
..|....+.+|++|.+.|++++++......+...+.......+.+.
T Consensus 120 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 120 YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466678999999999999999999888887777766666555543
No 96
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=80.07 E-value=13 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=30.0
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~ 82 (92)
+....+.+|.+|.|.|++..++......+...+.....+.
T Consensus 115 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 154 (394)
T TIGR00883 115 GGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLL 154 (394)
T ss_pred cccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999999998877777766665554433
No 97
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=79.02 E-value=5.9 Score=28.63 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=34.3
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
+......++.||.|.|+++.++....+.....+.....|.+.
T Consensus 146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445567899999999999999998778888877777777654
No 98
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=78.45 E-value=6.6 Score=28.26 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=36.1
Q ss_pred cchhheecccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINI--KGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~--R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|..-.+.+|.||.+. |+++.++-.....+...+....-|.+.+..||
T Consensus 124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw 172 (489)
T PRK10207 124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY 172 (489)
T ss_pred CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence 556688999999885 46677777777778887777778888777664
No 99
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=77.40 E-value=10 Score=29.68 Aligned_cols=35 Identities=11% Similarity=-0.047 Sum_probs=28.0
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVS 77 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~ 77 (92)
+....+..|..|.+.|+++.++.+..+.+...+..
T Consensus 341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~ 375 (1146)
T PRK08633 341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFL 375 (1146)
T ss_pred HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHH
Confidence 44567888999999999999999888887764443
No 100
>PRK10504 putative transporter; Provisional
Probab=77.14 E-value=7.8 Score=27.12 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
....+..|..|.|.|+.+.++.+..+.+...+.......+++..+
T Consensus 373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677899999999999999999998888888877777766544
No 101
>PRK10489 enterobactin exporter EntS; Provisional
Probab=77.12 E-value=11 Score=26.04 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=31.4
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
+....+.+|..|.|.|+++.++......+...+.......+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~ 172 (417)
T PRK10489 129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA 172 (417)
T ss_pred HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 33456788999999999999988777766666655555555443
No 102
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=77.12 E-value=1.8 Score=30.54 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=37.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 87 (92)
+..+.+..|..|.+.|+++.++.+....+.+.+.......+.+..
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 352 ALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 556678889999999999999999999998888877776666554
No 103
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=76.87 E-value=10 Score=25.79 Aligned_cols=46 Identities=9% Similarity=-0.117 Sum_probs=29.7
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+....+..|..|.|.|+++.++......+...+....-..+.+..+
T Consensus 131 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g 176 (399)
T PRK05122 131 TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGG 176 (399)
T ss_pred chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHccc
Confidence 4444567899999999999988766555554444444444444433
No 104
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=76.62 E-value=5.2 Score=27.66 Aligned_cols=45 Identities=9% Similarity=-0.005 Sum_probs=37.3
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 87 (92)
|....+..|..|.+.|++..++.+....+...+.......+.|..
T Consensus 316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 445577889999999999999999988888888887777777653
No 105
>PRK11010 ampG muropeptide transporter; Validated
Probab=76.39 E-value=10 Score=27.17 Aligned_cols=53 Identities=9% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 36 AFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 36 ~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
.++.+. +..+.+..|+.|.+.+++..++.+....+...+.......+.|..|+
T Consensus 329 ~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~ 381 (491)
T PRK11010 329 CGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGW 381 (491)
T ss_pred HHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 334443 33467888999999999999999888888877777777777776653
No 106
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=76.10 E-value=10 Score=27.32 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=34.4
Q ss_pred cchhheecccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINI--KGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~--R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|....+.+|.||.+. |..+.++......+...+.....+.+.+..||
T Consensus 131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~ 179 (500)
T PRK09584 131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGW 179 (500)
T ss_pred CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 555678999998654 44567776777888888888888888776664
No 107
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=75.98 E-value=8.9 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=33.7
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
|....+..|..|.|.|+++.++......+...+.......+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 118 PPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567899999999999999998888888777766666554
No 108
>TIGR00901 2A0125 AmpG-related permease.
Probab=75.81 E-value=3.1 Score=27.91 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=23.5
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVN 69 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~ 69 (92)
.+....+..|..|.|.|++..++.....
T Consensus 327 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 327 TVAFVAFLSKLSNPKFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 4566788999999999999999887654
No 109
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=75.51 E-value=5.4 Score=28.16 Aligned_cols=46 Identities=9% Similarity=0.005 Sum_probs=34.9
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
+....+..|.+| +.|+++.++......+...+.....+.+.+..||
T Consensus 127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gw 172 (455)
T TIGR00892 127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGW 172 (455)
T ss_pred hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhCh
Confidence 444567789997 7899999999988888877777776766665553
No 110
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=75.50 E-value=7.1 Score=27.83 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=33.8
Q ss_pred cchhheecccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIF-PINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eif-p~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|.......+.+ |.|.|+++.++......+...+....-..+.+..+|
T Consensus 113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 33444455655 789999999999888888877777766666665553
No 111
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=75.15 E-value=15 Score=26.25 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhccccchh-heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 24 ALAVTGILLYIAAFSAGMGAVPW-VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 24 ~~~i~~~~~~~~~~~~g~~~i~~-~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
+.....+.+.....+++....++ .+.+|.-|.|.|++..++....--+...+...++-.+++
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 33444444444555555555566 589999999999999999888765555555555555543
No 112
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=72.52 E-value=11 Score=26.96 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=34.1
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFL 83 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~ 83 (92)
..|..+.+.+|.-|.+.|++.+++-.....+.+.+........
T Consensus 398 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 398 ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477778889999999999999999887777777766655543
No 113
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=71.83 E-value=29 Score=23.81 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=29.1
Q ss_pred hheecccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 46 WVVMSEIF-PINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 46 ~~~~~Eif-p~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
..+.+|+. +.+.|++..++......+...+.....+.+..
T Consensus 121 ~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~ 161 (437)
T TIGR00792 121 WSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVS 161 (437)
T ss_pred hhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778887 56889999998887777777766665555543
No 114
>PRK10091 MFS transport protein AraJ; Provisional
Probab=71.20 E-value=8.6 Score=26.21 Aligned_cols=36 Identities=14% Similarity=-0.124 Sum_probs=25.3
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSY 78 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~ 78 (92)
+....+.+|.+|.+.|++..++......+...+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 145 (382)
T PRK10091 110 GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP 145 (382)
T ss_pred HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc
Confidence 344567889999999999888776665555554433
No 115
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=69.82 E-value=12 Score=26.70 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=36.6
Q ss_pred ccchhheecccCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINI---KGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~---R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.|....+.+|.+|.+. |+++.++.....++...+.....+.+.+..+
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555678899998764 8888888888888888888888887776655
No 116
>PRK09669 putative symporter YagG; Provisional
Probab=68.30 E-value=38 Score=23.67 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred HHHHHhhccccchhheecccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 33 YIAAFSAGMGAVPWVVMSEIF-PINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 33 ~~~~~~~g~~~i~~~~~~Eif-p~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
+...++. .......+.+|+. +.+.|.+..+.......+...+.....+.+...
T Consensus 119 ~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~ 172 (444)
T PRK09669 119 LSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI 172 (444)
T ss_pred HHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344442 3333346889998 557799888888887777777766555444443
No 117
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=68.12 E-value=10 Score=26.57 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=31.4
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
+..+....|..|. .++...++.+..+.+..++.....+.+.+
T Consensus 380 ~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 380 AGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred hhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 3445566677665 89999999999988888888777766554
No 118
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=68.00 E-value=28 Score=23.69 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=33.4
Q ss_pred heecccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 47 VVMSEIFPI-NIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 47 ~~~~Eifp~-~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
....+..+. |.|++..++.+....+...+.......+.|..|+
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~ 369 (390)
T TIGR02718 326 TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY 369 (390)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344455554 8999999999999999988888888888776663
No 119
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=67.10 E-value=11 Score=22.92 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=16.3
Q ss_pred ecccCCcchHHHHHHHHHHHHH
Q 034511 49 MSEIFPINIKGVGGSLATLVNW 70 (92)
Q Consensus 49 ~~Eifp~~~R~~~~~~~~~~~~ 70 (92)
..|++|...|....+......+
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~ 81 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSS 81 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHH
Confidence 3699999999988776654433
No 120
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=66.03 E-value=11 Score=26.74 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=27.3
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~ 80 (92)
+..|.+.+|+.| |.|+...++....+.+.+.+....+
T Consensus 367 ~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 367 GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHH
Confidence 346677788765 7899999998887777776665543
No 121
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=65.69 E-value=22 Score=23.78 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.9
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN 81 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p 81 (92)
.+..+....|.+| +.|+++.++.+...+..+.+......
T Consensus 318 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 318 SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788888 56899999988888877766665555
No 122
>PRK11462 putative transporter; Provisional
Probab=64.98 E-value=48 Score=23.59 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=37.1
Q ss_pred HHHHHHhhccccchh-heecccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 034511 32 LYIAAFSAGMGAVPW-VVMSEIFP-INIKGVGGSLATLVNWFGAWLVSYTFNFLMTWS 87 (92)
Q Consensus 32 ~~~~~~~~g~~~i~~-~~~~Eifp-~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~ 87 (92)
++...|.. ..+|| .+.+|+-+ .|-|++..++-...+.+...+.....+.+.+..
T Consensus 118 ~~~~~~t~--~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~ 173 (460)
T PRK11462 118 LLTLLYTV--VNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI 173 (460)
T ss_pred HHHHHHHH--HhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444443 23444 68899988 788999999988888887777766655555543
No 123
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=64.06 E-value=29 Score=23.83 Aligned_cols=46 Identities=13% Similarity=0.026 Sum_probs=35.8
Q ss_pred cchhheecccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 43 AVPWVVMSEIF-PINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 43 ~i~~~~~~Eif-p~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
|.......|.+ |.|.|++..++......+...+.......+.|..|
T Consensus 311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44554555666 56889999999999999998888888888888765
No 124
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=63.98 E-value=29 Score=25.16 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=43.0
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+.+-.+.+|+-|.+-++.-.|+-...++..+++.+..+-.+.+..+
T Consensus 396 ~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 396 GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345677899999999999999999999999999999999988887655
No 125
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=63.96 E-value=21 Score=23.78 Aligned_cols=48 Identities=6% Similarity=-0.193 Sum_probs=26.3
Q ss_pred cccchhheecccCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVG--GSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~--~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..|....+..|..|.|-|.++ .+.....+.+...+....-..+.+..+
T Consensus 104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~ 153 (375)
T TIGR00899 104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG 153 (375)
T ss_pred hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc
Confidence 345556677888888777754 344444444444444444444444433
No 126
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=63.85 E-value=26 Score=24.54 Aligned_cols=29 Identities=14% Similarity=-0.049 Sum_probs=22.1
Q ss_pred hhheecccCCcchHHHHHHHHHHHHHHHH
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNWFGA 73 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~ 73 (92)
.-....|.+|.|.|+++.++......+..
T Consensus 141 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 169 (452)
T PRK11273 141 CGRTMVHWWSQKERGGIVSVWNCAHNVGG 169 (452)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHhhh
Confidence 34567899999999999998766655543
No 127
>PRK11043 putative transporter; Provisional
Probab=62.42 E-value=29 Score=23.66 Aligned_cols=44 Identities=7% Similarity=-0.066 Sum_probs=28.2
Q ss_pred hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...+.+|.+|.+.|.+..+.......+...+.......+.+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g 158 (401)
T PRK11043 115 WQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG 158 (401)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567899999988888777665555555555544444444444
No 128
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=62.29 E-value=23 Score=25.31 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=42.8
Q ss_pred HHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 31 LLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 31 ~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+..+.++++..|. ..+..|+-|.+.++...++......+...+....--.+.+..|
T Consensus 359 ~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 359 IIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444455554444 5678899999999999999999999998888866666666665
No 129
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=62.13 E-value=33 Score=22.99 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhccc-cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 26 AVTGILLYIAAFSAGMG-AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 26 ~i~~~~~~~~~~~~g~~-~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
....+.++....+.+.. +....+.+++-|.|.|++.+++...++.+..++.+.+...+.
T Consensus 11 ~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 11 VLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33344444454444443 556678999999999999999999999988888777766555
No 130
>PRK09669 putative symporter YagG; Provisional
Probab=61.03 E-value=39 Score=23.61 Aligned_cols=49 Identities=14% Similarity=0.365 Sum_probs=36.5
Q ss_pred cccchhheecccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 41 MGAVPWVVMSEIFP-------INIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 41 ~~~i~~~~~~Eifp-------~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
..++++.+.+|+.+ .|..+...+..+..+.+...+.......+++..|+
T Consensus 336 ~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 336 TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34788999999986 33345556777788888888888888888877663
No 131
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=60.71 E-value=31 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=32.1
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
.+..|+.|.|.|++..++....+.+...+.....+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 117 PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999988888887777664
No 132
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=59.59 E-value=29 Score=23.67 Aligned_cols=61 Identities=8% Similarity=-0.123 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 034511 26 AVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLV-NWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 26 ~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~-~~~~~~i~~~~~p~~~~~~~ 88 (92)
.+..-.+..+.++... +..-.+.++. |.+.|++++++-+.. ..+...+.+..-..+.|..|
T Consensus 296 ~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 296 IFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334455555555543 3344566787 999999999986543 34555556666666666554
No 133
>PRK09528 lacY galactoside permease; Reviewed
Probab=59.18 E-value=14 Score=25.52 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=29.2
Q ss_pred hheecccCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 46 WVVMSEIFPINIKGVGGSL-ATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 46 ~~~~~Eifp~~~R~~~~~~-~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+.+|.+|+|.|++..+. .+....+...+.......+.|..|
T Consensus 337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4567899999999987655 344455666666666666666555
No 134
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=58.85 E-value=16 Score=22.34 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=16.5
Q ss_pred ecccCCcchHHHHHHHHHHHHH
Q 034511 49 MSEIFPINIKGVGGSLATLVNW 70 (92)
Q Consensus 49 ~~Eifp~~~R~~~~~~~~~~~~ 70 (92)
..|++|...|....+......+
T Consensus 58 LkDm~Pp~~R~~i~~~~s~t~s 79 (145)
T TIGR00986 58 LKDIVPPTTRGWIYHKYSTTTN 79 (145)
T ss_pred HHhhCCHHHHHHHHHHHHHHHH
Confidence 3699999999988776654443
No 135
>PRK03699 putative transporter; Provisional
Probab=58.62 E-value=27 Score=23.89 Aligned_cols=47 Identities=6% Similarity=-0.107 Sum_probs=33.7
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..|....+..|..|.+ |++..+.......+...+.+.....+.+..|
T Consensus 311 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 311 IYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred HHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence 3344555677877644 6677788887888888888888888877655
No 136
>PRK10429 melibiose:sodium symporter; Provisional
Probab=58.51 E-value=56 Score=23.16 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=35.0
Q ss_pred ccchhheecccCC-----cchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 42 GAVPWVVMSEIFP-----INIKGV--GGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 42 ~~i~~~~~~Eifp-----~~~R~~--~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
.+.++.+.+|+-| +..|.. ..+.....+.+...+.......+++..|+
T Consensus 342 ~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 342 WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4667888999944 445444 46777788888888888888888876653
No 137
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=57.75 E-value=25 Score=24.18 Aligned_cols=27 Identities=11% Similarity=-0.203 Sum_probs=21.7
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHH
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGA 73 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~ 73 (92)
....|.+|.|.|++++|+......+..
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~ 154 (402)
T TIGR00897 128 VWVVYNTKQDNLSSAVGWFWAVYSIGI 154 (402)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999887766554
No 138
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=57.51 E-value=13 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=21.7
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWF 71 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~ 71 (92)
+..+.+.+|+.| +.|++..|+....+.+
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~ 364 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNL 364 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccC
Confidence 457788999998 6899998887776543
No 139
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=57.43 E-value=5.9 Score=27.91 Aligned_cols=39 Identities=8% Similarity=-0.029 Sum_probs=28.5
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFN 81 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p 81 (92)
|....+.+|.+|.|.|+++.++......+...+......
T Consensus 141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~ 179 (467)
T PRK09556 141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL 179 (467)
T ss_pred hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence 566678999999999999988876665555555444433
No 140
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=57.25 E-value=27 Score=27.61 Aligned_cols=42 Identities=5% Similarity=-0.143 Sum_probs=32.8
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
+....+..|..|.+.|++..|+.+..+.+...+.....-.+.
T Consensus 353 ~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 353 VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999888877766665554444
No 141
>PRK10054 putative transporter; Provisional
Probab=57.10 E-value=27 Score=24.09 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=34.0
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
|.......|.-|.+.|++..+..+ .+++...+.+...-.+.|..|.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~ 362 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPP 362 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcCh
Confidence 455567788899999999887544 5667777777777777776653
No 142
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=56.08 E-value=44 Score=22.96 Aligned_cols=42 Identities=17% Similarity=-0.021 Sum_probs=30.4
Q ss_pred chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
....+..|.+| |.|++.+++..........+.....|.+.+.
T Consensus 117 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~ 158 (393)
T PRK09705 117 VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH 158 (393)
T ss_pred hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456788898 6799999988777666666666666766654
No 143
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=55.66 E-value=42 Score=22.81 Aligned_cols=43 Identities=12% Similarity=0.066 Sum_probs=26.6
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
+....+..|.+|.+.|+++.++......+...+.......+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677899998889888777655555444444333333333
No 144
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=55.63 E-value=38 Score=25.38 Aligned_cols=53 Identities=8% Similarity=-0.040 Sum_probs=36.1
Q ss_pred HHHHHhhccc---cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 33 YIAAFSAGMG---AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 33 ~~~~~~~g~~---~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
-.+..++|.+ ++...++.|.+|.+.|++..++......+...+....-..+.+
T Consensus 178 ~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 178 SQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred HHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3444445444 4456799999999999999999887776666555444444443
No 145
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=55.12 E-value=16 Score=24.18 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhccc-cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 29 GILLYIAAFSAGMG-AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 29 ~~~~~~~~~~~g~~-~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
+++.+....+.++. ........+-|| +.|++..++.-...-+.+.+.+..+-...
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 33334444443332 333445668998 57999999999999999999888776554
No 146
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=55.00 E-value=38 Score=24.45 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=28.3
Q ss_pred ccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 40 GMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80 (92)
Q Consensus 40 g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~ 80 (92)
...|....+..+.-|.+.|++.+|+-....-+.+.+..+..
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788889999999999976544445555544443
No 147
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=53.26 E-value=24 Score=23.91 Aligned_cols=45 Identities=9% Similarity=-0.206 Sum_probs=33.4
Q ss_pred chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.......|..|.|.|++..++......+...+.......+.+..+
T Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g 375 (408)
T PRK09874 331 AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG 375 (408)
T ss_pred HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence 333455678899999999998888888888777777666665544
No 148
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=52.02 E-value=16 Score=26.06 Aligned_cols=47 Identities=13% Similarity=-0.022 Sum_probs=32.1
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.++...+.+|+-|++.|+++.++...-.-+...+..-.--.+=|..|
T Consensus 119 ~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 35667889999999999999998876666555554333333334444
No 149
>PRK11043 putative transporter; Provisional
Probab=51.62 E-value=49 Score=22.55 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=30.4
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
|.......|..| +.|+++.++.+..+.............+.+
T Consensus 315 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 315 PIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444445567776 579999999998888877777777666544
No 150
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=51.45 E-value=41 Score=24.22 Aligned_cols=26 Identities=38% Similarity=0.296 Sum_probs=21.2
Q ss_pred hhheecccCCcchHHHHHHHHHHHHH
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNW 70 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~ 70 (92)
.-++.+|+-|.+.|+.-.+.......
T Consensus 163 ~piy~sEiap~~~RG~l~~~~~l~~~ 188 (513)
T KOG0254|consen 163 APVYISEIAPAHIRGTLVSLYQLFIT 188 (513)
T ss_pred chhhHhhcCChhhhHHHHHHHHHHHH
Confidence 34689999999999999887766655
No 151
>PRK10429 melibiose:sodium symporter; Provisional
Probab=50.94 E-value=87 Score=22.21 Aligned_cols=37 Identities=0% Similarity=-0.122 Sum_probs=25.5
Q ss_pred heecccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 47 VVMSEIF-PINIKGVGGSLATLVNWFGAWLVSYTFNFL 83 (92)
Q Consensus 47 ~~~~Eif-p~~~R~~~~~~~~~~~~~~~~i~~~~~p~~ 83 (92)
.+.+|+- +.+.|.+..+.-.....+.+.+.....+.+
T Consensus 129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~ 166 (473)
T PRK10429 129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF 166 (473)
T ss_pred hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789998 588899988886666565555554444433
No 152
>PTZ00207 hypothetical protein; Provisional
Probab=50.35 E-value=48 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.3
Q ss_pred chhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 44 VPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLM 84 (92)
Q Consensus 44 i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~ 84 (92)
.......+.|| +.|++..++......+.+.+.......+.
T Consensus 140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788997 78999999999998888877665555443
No 153
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=50.20 E-value=75 Score=21.22 Aligned_cols=40 Identities=20% Similarity=0.079 Sum_probs=26.9
Q ss_pred hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
...+..|.+| +.|++..++......+...+.....+.+.+
T Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~ 147 (355)
T TIGR00896 108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ 147 (355)
T ss_pred chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446688887 579999998877766666655555554443
No 154
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=49.01 E-value=14 Score=27.79 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=21.3
Q ss_pred hccccchhheecccCCcchHHHHHHHHHH
Q 034511 39 AGMGAVPWVVMSEIFPINIKGVGGSLATL 67 (92)
Q Consensus 39 ~g~~~i~~~~~~Eifp~~~R~~~~~~~~~ 67 (92)
.|...+.....+|+.|.|.|..+.++...
T Consensus 145 aG~~~~~~~~isEl~p~k~R~~~~~~~~~ 173 (599)
T PF06609_consen 145 AGVQELAALAISELVPNKWRGLGLAIASI 173 (599)
T ss_pred hHHHHHHHHHHHHhcccchhhhHhHHHHH
Confidence 34445566678999999999888766553
No 155
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=48.89 E-value=1.1e+02 Score=22.56 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=42.9
Q ss_pred HHHHHHHhhccccchh-heecccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 31 LLYIAAFSAGMGAVPW-VVMSEIFPI-NIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 31 ~~~~~~~~~g~~~i~~-~~~~Eifp~-~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
.++...|++ -.+|| .+.+|+-+. +-|.+..+.=.....+.++++....|++.+..+
T Consensus 120 ~l~~l~YT~--vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g 177 (467)
T COG2211 120 MLLGLGYTL--VNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG 177 (467)
T ss_pred HHHHHHHHh--eeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334455554 45566 688898764 559999999999999999999999999988765
No 156
>PRK09848 glucuronide transporter; Provisional
Probab=46.01 E-value=1e+02 Score=21.56 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=36.4
Q ss_pred cchhheecccCCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPIN-------IKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~-------~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
+..+.+.+|.-|.+ .++...++.+..+.+...+.......+++..|+
T Consensus 338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56777888887653 468888898898999988888888888776653
No 157
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=45.75 E-value=7.7 Score=28.05 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=35.4
Q ss_pred HhhccccchhheecccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Q 034511 37 FSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWF-GAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 37 ~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~-~~~i~~~~~p~~~~~~~ 88 (92)
+-.|+.-+.-.-..|.-|.+.-+.+.|+...+..+ .+.........+.|..|
T Consensus 359 ~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g 411 (448)
T COG2271 359 LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG 411 (448)
T ss_pred HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCC
Confidence 33344444445788999999999999999999998 45544444444444444
No 158
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=44.60 E-value=9.4 Score=27.28 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=33.7
Q ss_pred heecccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Q 034511 47 VVMSEIFPINIKGVGGSLAT-LVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~-~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
=|.+|.||.|..++...++. ....+...+.+.....+.|..|
T Consensus 335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G 377 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG 377 (412)
T ss_dssp HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC
Confidence 37899999999999999864 5566778888888888888876
No 159
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=44.11 E-value=24 Score=25.85 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.2
Q ss_pred hheecccCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 034511 46 WVVMSEIFPINIKGVGGSLATLVNWFGAWLV-SYTFNFLM 84 (92)
Q Consensus 46 ~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~-~~~~p~~~ 84 (92)
-.+..|+-|.+.|+....+....-.+...+. ....|.++
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~il 177 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLL 177 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhc
Confidence 3578999999999999888777666665555 33345554
No 160
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=43.68 E-value=61 Score=23.52 Aligned_cols=47 Identities=11% Similarity=0.022 Sum_probs=40.4
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW-SSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~-~~~ 89 (92)
|..-.+.+.-.|++-|++..++..+...+...+..-....+.+. .||
T Consensus 147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW 194 (466)
T KOG2532|consen 147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGW 194 (466)
T ss_pred hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC
Confidence 55667889999999999999999999999988888788888877 664
No 161
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=43.39 E-value=81 Score=23.00 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhccccchhheecccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 24 ALAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIK--GVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 24 ~~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R--~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..++.....-+.++. ...+||.+.+|.-|.+-| +.-+|+-+.+-.+-..+.+.....+.+..|
T Consensus 381 ~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 381 ASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred HHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444444455554 457899999999997656 556777777777777777766665555444
No 162
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=43.13 E-value=1e+02 Score=22.78 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=33.8
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..-+.-|.+.|++..++.........-+.......+.+..|
T Consensus 330 t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 330 TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456688999999999999988888887777777777766554
No 163
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=42.95 E-value=1e+02 Score=22.55 Aligned_cols=43 Identities=9% Similarity=0.073 Sum_probs=25.2
Q ss_pred HHHHHHhhccccchhheecccCCcchHH--HHHHHHHHHHHHHHHH
Q 034511 32 LYIAAFSAGMGAVPWVVMSEIFPINIKG--VGGSLATLVNWFGAWL 75 (92)
Q Consensus 32 ~~~~~~~~g~~~i~~~~~~Eifp~~~R~--~~~~~~~~~~~~~~~i 75 (92)
+.-++.+...+| .-.+.+|+.|.+.|. .+.++......+.+.+
T Consensus 123 lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il 167 (477)
T TIGR01301 123 ILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVL 167 (477)
T ss_pred HHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333 347899999998764 5666655555444443
No 164
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=40.81 E-value=18 Score=26.44 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=35.2
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
..|-+.+---+-.|-|+.++|++.+-.-+..++.+...-++++..||
T Consensus 153 ~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~ 199 (509)
T KOG2504|consen 153 YLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW 199 (509)
T ss_pred hcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence 33444433466778999999999999888888887777777777664
No 165
>PRK03633 putative MFS family transporter protein; Provisional
Probab=38.92 E-value=1.2e+02 Score=20.51 Aligned_cols=48 Identities=17% Similarity=-0.063 Sum_probs=31.8
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..|.......|..|.+.|....+.......+...+.+...-.+.|..+
T Consensus 302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346666677898888776666666555666666666666666666544
No 166
>PRK03633 putative MFS family transporter protein; Provisional
Probab=38.39 E-value=84 Score=21.32 Aligned_cols=37 Identities=11% Similarity=-0.029 Sum_probs=25.9
Q ss_pred heecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 47 VVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFL 83 (92)
Q Consensus 47 ~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~ 83 (92)
....|..|.+.|+++.+.......+...+.......+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456788889999999987777666666555554443
No 167
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=37.25 E-value=17 Score=26.38 Aligned_cols=55 Identities=15% Similarity=-0.040 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhhccccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 25 LAVTGILLYIAAFSAGMGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80 (92)
Q Consensus 25 ~~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~ 80 (92)
+..++..+--.+.+.|+ |.+.-.++.-||.+-|++-.++=+..+++.+.+...+.
T Consensus 119 ~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 119 LFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 33445555566777776 44556688999999999999988888888877766555
No 168
>PF13347 MFS_2: MFS/sugar transport protein
Probab=36.04 E-value=1.5e+02 Score=20.60 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=36.7
Q ss_pred ccchhheecccCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 42 GAVPWVVMSEIFPI-------NIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 42 ~~i~~~~~~Eifp~-------~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+++.+.+|+-+. |..+.-.++-+...++...+.......+++..|
T Consensus 333 ~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 333 FVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred ccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 47899999999984 334666777888888888888888888877655
No 169
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=35.67 E-value=64 Score=21.99 Aligned_cols=41 Identities=5% Similarity=0.003 Sum_probs=29.3
Q ss_pred eecccCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 48 VMSEIFPINIKGVGGSL-ATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 48 ~~~Eifp~~~R~~~~~~-~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..|..|.|.|+.+.+. .+....+.+.+.....-.+.|..|
T Consensus 331 ~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G 372 (396)
T TIGR00882 331 YITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG 372 (396)
T ss_pred HHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 56788899998887766 345666777777767777777655
No 170
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=74 Score=19.31 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.1
Q ss_pred cccCCcchHHHHH
Q 034511 50 SEIFPINIKGVGG 62 (92)
Q Consensus 50 ~Eifp~~~R~~~~ 62 (92)
.|+||...|++..
T Consensus 52 kEivp~g~R~~i~ 64 (136)
T KOG4111|consen 52 KEIVPQGRRSAIG 64 (136)
T ss_pred Hhhcchhhhhhhh
Confidence 5999999995543
No 171
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=31.73 E-value=1.6e+02 Score=21.51 Aligned_cols=56 Identities=13% Similarity=0.302 Sum_probs=34.9
Q ss_pred HHHHHhhcccc-chhheecccCCc------c---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 33 YIAAFSAGMGA-VPWVVMSEIFPI------N---------------IKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 33 ~~~~~~~g~~~-i~~~~~~Eifp~------~---------------~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
...+.+.|.|. ..+=+++++||. + .=+...|+..+.+-+.+|+.+..+-...+..|
T Consensus 353 ~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g 430 (462)
T PRK15034 353 MGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG 430 (462)
T ss_pred HHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC
Confidence 34445556663 345577888885 1 22344666677777777888777777666544
No 172
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=31.62 E-value=1.7e+02 Score=19.87 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=26.7
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTF 80 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~ 80 (92)
.|....+..|.+| |.|+++.++.+....+...+.....
T Consensus 317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~ 354 (394)
T PRK11652 317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLS 354 (394)
T ss_pred HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566778887 5788888888877777766665543
No 173
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=31.50 E-value=1.6e+02 Score=19.62 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=29.1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 51 EIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 51 Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
+..+.+.|+...++......+...+.......+.|..|
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 313 RSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556777888888888888888888888888887765
No 174
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=29.58 E-value=1.9e+02 Score=21.23 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=24.9
Q ss_pred hhccccchhheecccCCcchHHHHHHHHHH
Q 034511 38 SAGMGAVPWVVMSEIFPINIKGVGGSLATL 67 (92)
Q Consensus 38 ~~g~~~i~~~~~~Eifp~~~R~~~~~~~~~ 67 (92)
-+-..|+.....+++-|.|.|++.+|.-..
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l 420 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYML 420 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHH
Confidence 344678888899999999999999998644
No 175
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=28.92 E-value=2.2e+02 Score=20.35 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.1
Q ss_pred hhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 45 PWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 45 ~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
......|..|.+.|+.+.++.+....+...+.......+.+
T Consensus 372 ~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 372 STSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678899999999999988888887776666655543
No 176
>PRK15011 sugar efflux transporter B; Provisional
Probab=27.41 E-value=2.1e+02 Score=19.58 Aligned_cols=48 Identities=8% Similarity=-0.201 Sum_probs=24.9
Q ss_pred cccchhheecccCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVG--GSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~--~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..|....+.+|..|.|-|..+ .++....+.+...+....-..+.+..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g 171 (393)
T PRK15011 122 ANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS 171 (393)
T ss_pred hHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 345555666776666655432 344444455555555555544444444
No 177
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=27.39 E-value=2.4e+02 Score=20.27 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=38.9
Q ss_pred HHHhhccccchhh-eecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 35 AAFSAGMGAVPWV-VMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 35 ~~~~~g~~~i~~~-~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..++.+..+..+. -.+| .-+|.++.+.++-....++...+....-..++|..|
T Consensus 310 wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g 363 (394)
T COG2814 310 WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG 363 (394)
T ss_pred HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555544443 3556 557899999999999999998888888777777655
No 178
>PRK11462 putative transporter; Provisional
Probab=27.10 E-value=2.4e+02 Score=20.12 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=34.5
Q ss_pred cccchhheecccCC-----cchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFP-----INIKGVGG--SLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp-----~~~R~~~~--~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+++|.+.+|.-+ +..|..+. +.....+++...+.......+++..|
T Consensus 335 ~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 335 VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34667888888876 33566565 44458888998888888888887655
No 179
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=25.38 E-value=1.2e+02 Score=22.45 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=32.3
Q ss_pred ccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 42 GAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMT 85 (92)
Q Consensus 42 ~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~ 85 (92)
.|.-..+.+|+.|.+.-.++.++.....++...+....-..++.
T Consensus 121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46666889999999999999998887777766655544444443
No 180
>PF08853 DUF1823: Domain of unknown function (DUF1823); InterPro: IPR014952 These proteins are functionally uncharacterised. ; PDB: 2L1N_A.
Probab=25.03 E-value=61 Score=19.09 Aligned_cols=23 Identities=26% Similarity=0.703 Sum_probs=15.0
Q ss_pred ecccCCcchHHHHHHHHHHHHHHHHHHH
Q 034511 49 MSEIFPINIKGVGGSLATLVNWFGAWLV 76 (92)
Q Consensus 49 ~~Eifp~~~R~~~~~~~~~~~~~~~~i~ 76 (92)
+.|+.|-+.|- +.+.||+.++..
T Consensus 92 i~el~Pr~TRR-----ATaaNWLL~~~~ 114 (116)
T PF08853_consen 92 IGELYPRRTRR-----ATAANWLLSYMA 114 (116)
T ss_dssp GGG--HHHHHH-----HHHHHHHHHHHH
T ss_pred ecCcCccHHHH-----HHHHHHHHHHHh
Confidence 67999988875 456788776654
No 181
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=24.64 E-value=2.3e+02 Score=19.21 Aligned_cols=48 Identities=10% Similarity=-0.104 Sum_probs=27.1
Q ss_pred cccchhheecccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 034511 41 MGAVPWVVMSEIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTWSS 88 (92)
Q Consensus 41 ~~~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~ 88 (92)
..+....+..|..+.|.|+...+.-.....+...+.......+.+..+
T Consensus 114 ~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g 161 (390)
T TIGR02718 114 QDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG 161 (390)
T ss_pred HHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555567788888877776655555444444444433334444444
No 182
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=24.28 E-value=2e+02 Score=21.58 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=29.4
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034511 51 EIFPINIKGVGGSLATLVNWFGAWLVSYTFNFLMTW 86 (92)
Q Consensus 51 Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~~~~~ 86 (92)
+=.|.+.|+.++++.....-+.+++.+.........
T Consensus 485 ~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~ 520 (571)
T KOG1237|consen 485 SQAPESMKSVATALWLLTVAVGNYLSSVLVSLVQFS 520 (571)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999999999999999988877665543
No 183
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=22.72 E-value=3.2e+02 Score=20.15 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhccccchhheecccCCc-----chHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 034511 26 AVTGILLYIAAFSAGMGAVPWVVMSEIFPI-----NIKGVG--GSLATLVNWFGAWLVSYTFNFLMTWSSY 89 (92)
Q Consensus 26 ~i~~~~~~~~~~~~g~~~i~~~~~~Eifp~-----~~R~~~--~~~~~~~~~~~~~i~~~~~p~~~~~~~~ 89 (92)
.++..++..+..+. ..+++|.+.+|+-+. ..|..| .+.-..+..+...+.......+++..|+
T Consensus 330 ~~~~~~i~~~g~~~-~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 330 IVVALIIAGVGTGI-ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHhhc-cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444455444 468999999998653 345554 5666778889999998888888887764
No 184
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=20.67 E-value=1.3e+02 Score=14.89 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=16.1
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034511 50 SEIFPINIKGVGGSLATLVNWFGAWLVSYTFNF 82 (92)
Q Consensus 50 ~Eifp~~~R~~~~~~~~~~~~~~~~i~~~~~p~ 82 (92)
+++|..|+++..........-+.-.+.....|.
T Consensus 4 s~LYrsris~~~~~~lvlaaLvav~v~l~~s~~ 36 (53)
T PF12555_consen 4 SRLYRSRISGWALALLVLAALVAVAVALLISPA 36 (53)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHhCcc
Confidence 456666666665554444443333333333343
No 185
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=20.02 E-value=16 Score=26.38 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=22.9
Q ss_pred cchhheecccCCcchHHHHHHHHHHHHHHH
Q 034511 43 AVPWVVMSEIFPINIKGVGGSLATLVNWFG 72 (92)
Q Consensus 43 ~i~~~~~~Eifp~~~R~~~~~~~~~~~~~~ 72 (92)
.+.-++.+|+.|.|.|+++++.......+.
T Consensus 139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lG 168 (451)
T KOG2615|consen 139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLG 168 (451)
T ss_pred HHHHHHHHhhcChhhccceeeeeehhhhcc
Confidence 456678999999999999988765554433
Done!