Query 034515
Match_columns 92
No_of_seqs 121 out of 1113
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00583 Acetyltransf_1: Acety 99.8 8.4E-19 1.8E-23 88.7 8.6 75 1-76 7-83 (83)
2 TIGR02382 wecD_rffC TDP-D-fuco 99.8 2E-18 4.2E-23 99.7 8.7 77 1-81 110-186 (191)
3 KOG3139 N-acetyltransferase [G 99.8 2.2E-18 4.7E-23 95.3 7.8 81 2-83 69-149 (165)
4 PRK10809 ribosomal-protein-S5- 99.8 6.5E-18 1.4E-22 97.6 8.6 81 1-82 88-168 (194)
5 PRK10151 ribosomal-protein-L7/ 99.8 1.4E-17 3E-22 95.1 8.8 80 1-82 78-157 (179)
6 PRK10146 aminoalkylphosphonic 99.7 1.3E-17 2.9E-22 92.0 7.4 78 1-79 58-137 (144)
7 PRK10975 TDP-fucosamine acetyl 99.7 3.2E-17 7E-22 94.8 8.9 77 1-81 113-189 (194)
8 PRK10140 putative acetyltransf 99.7 6.2E-17 1.3E-21 90.7 8.9 81 1-82 62-143 (162)
9 TIGR02406 ectoine_EctA L-2,4-d 99.7 7E-17 1.5E-21 90.8 8.8 78 1-80 51-128 (157)
10 TIGR01575 rimI ribosomal-prote 99.7 6.2E-17 1.3E-21 87.7 8.0 79 1-84 42-120 (131)
11 PF13302 Acetyltransf_3: Acety 99.7 1.2E-16 2.6E-21 87.8 9.0 74 1-76 69-142 (142)
12 PRK03624 putative acetyltransf 99.7 5.6E-17 1.2E-21 88.6 7.5 77 1-82 56-132 (140)
13 COG0456 RimI Acetyltransferase 99.7 1.3E-16 2.7E-21 90.6 9.1 66 17-83 91-157 (177)
14 COG1670 RimL Acetyltransferase 99.7 9E-17 1.9E-21 91.4 8.4 82 1-83 79-161 (187)
15 PRK15130 spermidine N1-acetylt 99.7 1.9E-16 4E-21 90.9 9.1 80 1-82 68-147 (186)
16 PRK09491 rimI ribosomal-protei 99.7 1.6E-16 3.5E-21 88.1 8.4 77 1-82 51-127 (146)
17 TIGR03585 PseH pseudaminic aci 99.7 2.3E-16 4.9E-21 88.1 8.4 80 1-83 62-141 (156)
18 PF13420 Acetyltransf_4: Acety 99.7 2.6E-16 5.6E-21 87.8 8.1 80 1-82 62-141 (155)
19 PF13523 Acetyltransf_8: Acety 99.7 7.9E-16 1.7E-20 85.8 9.4 82 1-82 59-143 (152)
20 PTZ00330 acetyltransferase; Pr 99.7 1.4E-15 3E-20 84.2 8.9 76 1-80 63-141 (147)
21 TIGR03448 mycothiol_MshD mycot 99.7 1.1E-15 2.5E-20 92.9 8.9 65 16-81 225-289 (292)
22 PLN02706 glucosamine 6-phospha 99.7 1.8E-15 3.8E-20 84.2 8.7 76 1-80 66-144 (150)
23 TIGR03827 GNAT_ablB putative b 99.6 7.3E-16 1.6E-20 93.0 7.2 79 1-82 169-247 (266)
24 PRK10314 putative acyltransfer 99.6 3.4E-15 7.4E-20 83.7 7.3 77 1-81 59-135 (153)
25 TIGR03103 trio_acet_GNAT GNAT- 99.6 7.9E-15 1.7E-19 95.8 9.1 79 1-80 136-217 (547)
26 PF08445 FR47: FR47-like prote 99.6 8.1E-15 1.8E-19 75.0 7.2 63 16-80 20-82 (86)
27 PF13508 Acetyltransf_7: Acety 99.6 3.4E-14 7.4E-19 71.4 8.3 66 1-77 14-79 (79)
28 PRK07757 acetyltransferase; Pr 99.6 3.6E-14 7.7E-19 79.1 8.1 72 1-81 52-123 (152)
29 PF13673 Acetyltransf_10: Acet 99.6 5.7E-14 1.2E-18 74.9 8.0 63 1-75 55-117 (117)
30 KOG2488 Acetyltransferase (GNA 99.6 1.8E-14 3.8E-19 81.8 6.2 81 1-82 104-184 (202)
31 TIGR01686 FkbH FkbH-like domai 99.5 5.3E-14 1.2E-18 86.9 8.3 73 1-78 245-319 (320)
32 PRK07922 N-acetylglutamate syn 99.5 8.2E-14 1.8E-18 79.2 8.2 72 1-81 57-128 (169)
33 COG1247 Sortase and related ac 99.5 1.1E-13 2.3E-18 78.3 8.2 80 2-83 65-146 (169)
34 PHA01807 hypothetical protein 99.5 1E-13 2.2E-18 77.7 7.8 72 1-73 64-136 (153)
35 KOG3216 Diamine acetyltransfer 99.5 1.3E-13 2.7E-18 76.0 7.6 79 1-80 66-146 (163)
36 PRK10514 putative acetyltransf 99.5 8.9E-14 1.9E-18 76.8 7.1 57 20-82 72-128 (145)
37 PRK10562 putative acetyltransf 99.5 1.7E-13 3.6E-18 75.9 7.6 57 19-81 70-126 (145)
38 PHA00673 acetyltransferase dom 99.5 2.2E-13 4.8E-18 76.0 7.8 79 1-81 66-147 (154)
39 KOG4135 Predicted phosphogluco 99.5 1.6E-13 3.4E-18 75.4 6.1 90 1-90 84-180 (185)
40 cd02169 Citrate_lyase_ligase C 99.4 5.9E-13 1.3E-17 81.5 7.4 57 19-79 27-83 (297)
41 TIGR03448 mycothiol_MshD mycot 99.4 8.3E-13 1.8E-17 80.4 7.5 72 1-80 57-128 (292)
42 COG1246 ArgA N-acetylglutamate 99.4 7.9E-13 1.7E-17 73.2 6.6 73 1-80 51-123 (153)
43 PLN02825 amino-acid N-acetyltr 99.4 1.1E-12 2.4E-17 85.0 8.3 73 1-80 418-490 (515)
44 PRK05279 N-acetylglutamate syn 99.4 1.2E-12 2.6E-17 83.9 8.3 73 1-80 345-417 (441)
45 PRK12308 bifunctional arginino 99.4 1.1E-12 2.4E-17 86.9 7.9 73 1-82 514-586 (614)
46 COG3393 Predicted acetyltransf 99.4 3.1E-12 6.7E-17 76.2 7.4 69 11-81 195-263 (268)
47 TIGR01890 N-Ac-Glu-synth amino 99.4 3.1E-12 6.7E-17 81.8 8.0 74 1-81 333-406 (429)
48 PF13527 Acetyltransf_9: Acety 99.4 3E-12 6.6E-17 69.3 6.5 72 1-78 52-127 (127)
49 PF08444 Gly_acyl_tr_C: Aralky 99.4 2.5E-12 5.4E-17 65.4 5.4 63 15-79 17-79 (89)
50 PRK09831 putative acyltransfer 99.4 3.1E-12 6.7E-17 71.1 6.1 55 19-82 74-128 (147)
51 KOG3396 Glucosamine-phosphate 99.4 4.2E-12 9.1E-17 68.8 6.3 75 1-79 66-143 (150)
52 KOG3235 Subunit of the major N 99.3 1.1E-11 2.5E-16 68.9 6.7 84 1-84 53-139 (193)
53 PRK13688 hypothetical protein; 99.3 1.6E-11 3.5E-16 69.0 7.2 57 16-81 78-134 (156)
54 COG3981 Predicted acetyltransf 99.3 1.2E-11 2.5E-16 69.5 6.2 79 1-81 80-160 (174)
55 TIGR00124 cit_ly_ligase [citra 99.2 4.4E-11 9.5E-16 74.3 7.3 60 19-82 52-111 (332)
56 KOG3234 Acetyltransferase, (GN 99.2 5.6E-11 1.2E-15 66.0 6.5 81 3-84 55-135 (173)
57 KOG3397 Acetyltransferases [Ge 99.2 6.1E-11 1.3E-15 67.0 5.4 74 2-81 69-142 (225)
58 KOG3138 Predicted N-acetyltran 99.2 7.1E-11 1.5E-15 67.8 5.7 68 18-86 90-158 (187)
59 PRK01346 hypothetical protein; 99.2 1.2E-10 2.6E-15 74.1 7.0 74 1-80 58-136 (411)
60 TIGR01211 ELP3 histone acetylt 99.2 2.9E-10 6.3E-15 74.2 8.2 51 26-80 466-516 (522)
61 COG2153 ElaA Predicted acyltra 99.1 1.3E-09 2.9E-14 59.9 6.9 76 2-81 62-137 (155)
62 COG3818 Predicted acetyltransf 99.1 1.6E-09 3.6E-14 58.7 6.8 65 15-80 82-148 (167)
63 COG3153 Predicted acetyltransf 99.1 1E-09 2.3E-14 62.3 6.3 75 1-82 57-133 (171)
64 cd04301 NAT_SF N-Acyltransfera 99.0 1.6E-09 3.5E-14 51.0 6.1 55 1-57 10-64 (65)
65 PF12746 GNAT_acetyltran: GNAT 99.0 1.6E-09 3.5E-14 65.5 6.7 63 16-83 188-250 (265)
66 KOG4144 Arylalkylamine N-acety 98.8 1.4E-08 3E-13 56.6 4.2 62 16-80 100-161 (190)
67 PF13718 GNAT_acetyltr_2: GNAT 98.7 4.2E-08 9.2E-13 56.9 5.8 65 16-81 89-177 (196)
68 PF14542 Acetyltransf_CG: GCN5 98.7 1.3E-07 2.9E-12 47.4 6.7 62 2-73 11-72 (78)
69 COG1444 Predicted P-loop ATPas 98.4 7.1E-07 1.5E-11 60.5 6.0 64 17-83 531-594 (758)
70 COG4552 Eis Predicted acetyltr 98.4 5.3E-07 1.1E-11 56.2 4.7 59 16-80 69-127 (389)
71 COG0454 WecD Histone acetyltra 98.4 6.9E-07 1.5E-11 46.1 4.4 44 23-75 87-130 (156)
72 COG2388 Predicted acetyltransf 98.3 2.8E-06 6.2E-11 44.4 4.8 44 15-59 37-80 (99)
73 PF12568 DUF3749: Acetyltransf 98.2 1.5E-05 3.2E-10 43.3 6.0 61 16-79 60-124 (128)
74 COG5628 Predicted acetyltransf 97.9 8.9E-05 1.9E-09 39.9 6.0 72 1-77 48-120 (143)
75 COG3053 CitC Citrate lyase syn 97.9 7.5E-05 1.6E-09 46.0 6.3 60 19-82 58-117 (352)
76 PF13880 Acetyltransf_13: ESCO 97.6 0.00025 5.4E-09 34.8 4.3 32 16-47 4-35 (70)
77 COG1243 ELP3 Histone acetyltra 97.5 0.00016 3.5E-09 47.0 3.6 50 26-79 459-508 (515)
78 TIGR03694 exosort_acyl putativ 97.4 0.0013 2.8E-08 39.7 6.8 61 15-79 109-197 (241)
79 COG3882 FkbH Predicted enzyme 97.3 0.00051 1.1E-08 45.1 4.4 74 4-79 474-549 (574)
80 KOG2535 RNA polymerase II elon 97.3 0.00076 1.6E-08 42.8 4.8 50 27-79 497-546 (554)
81 PF00765 Autoind_synth: Autoin 97.2 0.0036 7.8E-08 36.3 7.0 62 15-80 88-155 (182)
82 PRK13834 putative autoinducer 97.2 0.0053 1.1E-07 36.3 7.4 61 15-79 97-164 (207)
83 PF06852 DUF1248: Protein of u 97.1 0.0032 7E-08 36.5 5.9 61 15-80 76-137 (181)
84 PF05301 Mec-17: Touch recepto 97.0 0.0054 1.2E-07 33.1 5.8 56 19-79 48-103 (120)
85 cd04264 DUF619-NAGS DUF619 dom 97.0 0.0082 1.8E-07 31.5 6.1 45 15-65 32-76 (99)
86 COG2401 ABC-type ATPase fused 96.9 0.00034 7.3E-09 45.5 0.9 62 17-79 241-307 (593)
87 PF11039 DUF2824: Protein of u 96.9 0.016 3.5E-07 31.9 6.9 66 16-84 61-126 (151)
88 cd04265 DUF619-NAGS-U DUF619 d 96.7 0.011 2.4E-07 31.0 5.6 44 16-65 33-76 (99)
89 PF13480 Acetyltransf_6: Acety 96.1 0.052 1.1E-06 29.3 6.2 43 16-59 93-135 (142)
90 COG3375 Uncharacterized conser 96.0 0.033 7.1E-07 33.5 5.1 62 17-79 74-136 (266)
91 PF01853 MOZ_SAS: MOZ/SAS fami 95.7 0.074 1.6E-06 31.1 5.7 31 17-47 80-110 (188)
92 KOG2036 Predicted P-loop ATPas 95.6 0.013 2.9E-07 40.6 3.0 30 18-47 615-644 (1011)
93 PHA01733 hypothetical protein 95.5 0.025 5.5E-07 31.9 3.2 49 34-82 86-134 (153)
94 PF02474 NodA: Nodulation prot 95.3 0.048 1E-06 31.5 4.1 54 16-74 84-137 (196)
95 KOG4601 Uncharacterized conser 95.3 0.1 2.3E-06 31.5 5.5 67 2-72 89-159 (264)
96 PHA02769 hypothetical protein; 95.2 0.031 6.7E-07 30.1 3.0 36 44-82 106-141 (154)
97 COG3916 LasI N-acyl-L-homoseri 95.0 0.3 6.6E-06 29.0 6.9 62 15-80 96-163 (209)
98 KOG2747 Histone acetyltransfer 94.9 0.025 5.5E-07 36.5 2.5 43 3-45 246-288 (396)
99 TIGR03827 GNAT_ablB putative b 94.7 0.088 1.9E-06 32.2 4.4 47 34-84 22-68 (266)
100 PF01233 NMT: Myristoyl-CoA:pr 94.6 0.34 7.4E-06 27.7 6.1 53 1-54 90-146 (162)
101 PF04377 ATE_C: Arginine-tRNA- 94.2 0.25 5.5E-06 27.2 5.0 57 18-78 64-120 (128)
102 PLN03238 probable histone acet 94.0 0.16 3.5E-06 31.6 4.4 30 18-47 156-185 (290)
103 PLN03239 histone acetyltransfe 94.0 0.084 1.8E-06 33.7 3.2 30 18-47 214-243 (351)
104 KOG2696 Histone acetyltransfer 93.6 0.18 3.9E-06 32.5 4.1 36 16-51 216-251 (403)
105 PHA00432 internal virion prote 93.2 0.22 4.8E-06 27.7 3.6 30 51-80 92-121 (137)
106 PTZ00064 histone acetyltransfe 93.1 0.12 2.7E-06 34.5 3.0 30 18-47 385-414 (552)
107 PRK01305 arginyl-tRNA-protein 93.0 0.55 1.2E-05 28.6 5.5 60 16-79 167-226 (240)
108 TIGR03019 pepcterm_femAB FemAB 93.0 0.75 1.6E-05 29.0 6.3 58 22-80 224-281 (330)
109 PLN00104 MYST -like histone ac 92.9 0.1 2.2E-06 34.5 2.4 30 18-47 307-336 (450)
110 PF11090 DUF2833: Protein of u 92.8 0.57 1.2E-05 24.0 4.5 28 52-79 56-83 (86)
111 PF04768 DUF619: Protein of un 92.4 1.2 2.6E-05 25.8 6.1 50 14-70 85-134 (170)
112 KOG3698 Hyaluronoglucosaminida 92.4 0.28 6.1E-06 33.6 4.0 54 28-82 827-880 (891)
113 PRK00756 acyltransferase NodA; 91.9 0.54 1.2E-05 27.1 4.2 53 16-73 84-136 (196)
114 PRK14852 hypothetical protein; 90.6 0.79 1.7E-05 33.4 4.8 68 16-87 120-188 (989)
115 cd04266 DUF619-NAGS-FABP DUF61 90.5 1.7 3.6E-05 23.3 5.9 46 15-66 37-84 (108)
116 PF13444 Acetyltransf_5: Acety 90.1 0.27 5.8E-06 25.6 1.8 24 16-39 77-100 (101)
117 PF12261 T_hemolysin: Thermost 89.8 1.8 3.8E-05 25.3 5.1 56 16-79 86-141 (179)
118 COG2935 Putative arginyl-tRNA: 88.8 1.9 4E-05 26.5 4.8 60 16-79 174-233 (253)
119 COG5027 SAS2 Histone acetyltra 88.0 0.18 4E-06 32.2 0.3 36 6-41 251-286 (395)
120 PF11124 Pho86: Inorganic phos 84.9 7.8 0.00017 24.6 6.8 79 1-79 180-270 (304)
121 PHA00771 head assembly protein 84.6 5.1 0.00011 22.2 6.6 65 17-84 62-126 (151)
122 PF04958 AstA: Arginine N-succ 83.4 2.8 6.1E-05 27.0 3.9 65 15-79 119-187 (342)
123 cd08356 Glo_EDI_BRP_like_17 Th 81.9 1.4 3E-05 23.1 1.9 20 62-81 11-30 (113)
124 cd07235 MRD Mitomycin C resist 81.5 1.3 2.9E-05 23.2 1.8 19 61-79 9-27 (122)
125 TIGR03243 arg_catab_AOST argin 80.7 3.4 7.4E-05 26.6 3.6 27 15-41 115-141 (335)
126 COG5630 ARG2 Acetylglutamate s 80.6 4.7 0.0001 26.6 4.2 44 3-46 386-430 (495)
127 cd09012 Glo_EDI_BRP_like_24 Th 80.3 1.7 3.6E-05 23.0 1.9 19 61-79 9-27 (124)
128 cd03173 DUF619-like DUF619 dom 80.1 6.8 0.00015 20.6 5.8 44 16-65 32-75 (98)
129 TIGR03244 arg_catab_AstA argin 79.8 3.7 8E-05 26.4 3.5 27 15-41 115-141 (336)
130 TIGR03245 arg_AOST_alph argini 79.8 3.8 8.3E-05 26.4 3.6 27 15-41 116-142 (336)
131 PRK10456 arginine succinyltran 79.7 3.7 8.1E-05 26.5 3.5 27 15-41 117-143 (344)
132 COG2231 Uncharacterized protei 79.7 6 0.00013 23.8 4.1 40 32-79 121-160 (215)
133 PF04816 DUF633: Family of unk 79.3 8.1 0.00018 23.0 4.7 48 33-80 74-122 (205)
134 PF13380 CoA_binding_2: CoA bi 78.7 8.2 0.00018 20.7 4.9 44 36-80 65-108 (116)
135 COG3607 Predicted lactoylgluta 77.1 1.8 3.9E-05 23.9 1.4 18 63-80 14-31 (133)
136 cd08350 BLMT_like BLMT, a bleo 77.1 2.4 5.2E-05 22.2 1.9 22 61-82 11-32 (120)
137 cd08353 Glo_EDI_BRP_like_7 Thi 74.3 4.9 0.00011 21.6 2.8 28 52-80 4-31 (142)
138 COG3640 CooC CO dehydrogenase 71.5 19 0.00041 22.3 4.9 66 16-86 154-222 (255)
139 KOG2779 N-myristoyl transferas 70.5 7.1 0.00015 25.5 3.0 47 1-47 147-197 (421)
140 PF02100 ODC_AZ: Ornithine dec 70.3 9 0.00019 20.4 3.0 52 28-80 33-87 (108)
141 cd07267 THT_Oxygenase_N N-term 68.6 5.2 0.00011 20.7 2.0 26 54-80 6-31 (113)
142 PTZ00129 40S ribosomal protein 68.6 20 0.00042 20.5 5.3 46 35-81 74-130 (149)
143 PRK04531 acetylglutamate kinas 67.6 24 0.00052 23.4 5.1 44 16-65 309-352 (398)
144 cd08358 Glo_EDI_BRP_like_21 Th 67.6 8.8 0.00019 21.0 2.7 19 61-79 11-30 (127)
145 cd08342 HPPD_N_like N-terminal 66.7 13 0.00029 20.0 3.4 20 61-80 9-29 (136)
146 PF04015 DUF362: Domain of unk 65.8 17 0.00037 21.3 3.9 47 33-80 19-67 (206)
147 COG1658 Small primase-like pro 64.9 4.9 0.00011 22.2 1.4 23 22-44 59-81 (127)
148 PF12953 DUF3842: Domain of un 64.4 19 0.00041 20.0 3.6 46 28-78 6-51 (131)
149 PF12681 Glyoxalase_2: Glyoxal 63.8 8.2 0.00018 19.5 2.1 19 63-81 6-25 (108)
150 COG3473 Maleate cis-trans isom 63.0 24 0.00052 21.5 4.1 32 49-80 115-149 (238)
151 PF14696 Glyoxalase_5: Hydroxy 62.9 4.6 0.0001 22.6 1.1 31 50-81 8-38 (139)
152 TIGR02990 ectoine_eutA ectoine 62.5 21 0.00045 21.9 3.9 41 39-80 108-151 (239)
153 COG2898 Uncharacterized conser 62.4 29 0.00063 24.1 4.8 58 1-62 404-461 (538)
154 PF09288 UBA_3: Fungal ubiquit 61.4 6.8 0.00015 18.3 1.3 34 32-79 6-39 (55)
155 KOG3014 Protein involved in es 61.2 35 0.00075 21.3 4.6 32 16-47 182-213 (257)
156 cd08344 MhqB_like_N N-terminal 60.7 8.4 0.00018 19.9 1.8 27 53-80 4-30 (112)
157 cd07253 Glo_EDI_BRP_like_2 Thi 59.4 20 0.00042 18.4 3.2 29 52-81 4-33 (125)
158 cd07238 Glo_EDI_BRP_like_5 Thi 58.3 11 0.00023 19.3 2.0 18 62-79 10-28 (112)
159 PF04260 DUF436: Protein of un 57.7 35 0.00076 19.9 4.0 48 34-82 44-94 (172)
160 TIGR03645 glyox_marine lactoyl 57.4 22 0.00048 20.0 3.3 27 51-78 4-31 (162)
161 COG3543 Uncharacterized conser 56.3 26 0.00057 19.5 3.2 37 27-63 14-50 (135)
162 PRK10150 beta-D-glucuronidase; 55.2 47 0.001 23.1 5.0 51 30-81 306-356 (604)
163 cd01027 TOPRIM_RNase_M5_like T 54.2 10 0.00022 19.0 1.4 23 21-43 48-70 (81)
164 PF00903 Glyoxalase: Glyoxalas 53.9 28 0.00061 17.8 3.2 29 53-82 3-32 (128)
165 PF03376 Adeno_E3B: Adenovirus 52.4 6.8 0.00015 18.9 0.6 14 25-38 52-65 (67)
166 COG2851 CitM H+/citrate sympor 52.2 31 0.00067 23.0 3.5 41 33-79 99-139 (433)
167 PRK10291 glyoxalase I; Provisi 51.5 16 0.00035 19.3 2.0 17 63-79 7-24 (129)
168 PRK13690 hypothetical protein; 50.7 51 0.0011 19.5 4.2 49 33-82 50-101 (184)
169 cd08349 BLMA_like Bleomycin bi 50.1 17 0.00037 18.3 1.9 20 62-81 8-28 (112)
170 TIGR01440 conserved hypothetic 49.9 51 0.0011 19.3 4.0 49 33-82 43-94 (172)
171 cd08346 PcpA_N_like N-terminal 49.5 34 0.00073 17.5 3.1 20 61-80 10-30 (126)
172 COG2384 Predicted SAM-dependen 49.4 60 0.0013 19.9 4.6 48 33-80 93-141 (226)
173 PF02334 RTP: Replication term 49.2 6.7 0.00014 21.2 0.3 35 18-53 17-51 (122)
174 cd07263 Glo_EDI_BRP_like_16 Th 49.1 17 0.00036 18.4 1.8 21 61-81 7-28 (119)
175 KOG4387 Ornithine decarboxylas 49.1 55 0.0012 19.4 4.8 60 22-81 104-166 (191)
176 TIGR03628 arch_S11P archaeal r 48.9 44 0.00095 18.2 4.9 45 35-80 48-103 (114)
177 PRK14968 putative methyltransf 48.4 49 0.0011 18.6 4.3 43 37-80 129-171 (188)
178 PF02836 Glyco_hydro_2_C: Glyc 47.9 56 0.0012 20.4 4.2 61 19-80 16-78 (298)
179 PF08901 DUF1847: Protein of u 47.7 12 0.00026 21.5 1.2 42 39-81 43-88 (157)
180 cd07249 MMCE Methylmalonyl-CoA 47.6 30 0.00065 17.8 2.7 26 55-81 4-30 (128)
181 cd08362 BphC5-RrK37_N_like N-t 47.6 38 0.00082 17.3 3.1 28 52-80 4-32 (120)
182 PF10566 Glyco_hydro_97: Glyco 47.6 54 0.0012 20.7 4.0 43 34-78 70-123 (273)
183 cd08364 FosX FosX, a fosfomyci 47.5 41 0.00089 17.9 3.3 28 51-79 4-32 (131)
184 cd07265 2_3_CTD_N N-terminal d 47.4 20 0.00042 18.7 1.9 27 53-80 6-33 (122)
185 cd08352 Glo_EDI_BRP_like_1 Thi 47.1 40 0.00086 17.2 3.4 28 51-79 3-31 (125)
186 COG3138 AstA Arginine/ornithin 47.0 17 0.00038 23.1 1.8 24 16-39 118-141 (336)
187 COG0623 FabI Enoyl-[acyl-carri 46.6 35 0.00076 21.2 3.0 42 19-60 145-186 (259)
188 PRK13886 conjugal transfer pro 46.1 70 0.0015 19.8 4.4 40 31-70 11-50 (241)
189 cd07252 BphC1-RGP6_N_like N-te 45.6 19 0.00042 18.8 1.8 26 54-80 5-31 (120)
190 cd06587 Glo_EDI_BRP_like This 45.5 24 0.00053 17.2 2.1 21 61-81 7-28 (112)
191 PRK09607 rps11p 30S ribosomal 45.4 55 0.0012 18.3 4.8 45 35-80 55-110 (132)
192 PF01418 HTH_6: Helix-turn-hel 45.2 19 0.00041 17.7 1.6 45 34-80 21-65 (77)
193 cd07240 ED_TypeI_classII_N N-t 44.7 24 0.00051 18.0 2.0 21 61-81 11-32 (117)
194 PF02896 PEP-utilizers_C: PEP- 44.6 71 0.0015 20.3 4.3 46 36-82 234-279 (293)
195 PF02219 MTHFR: Methylenetetra 44.4 78 0.0017 19.8 5.1 42 32-74 246-287 (287)
196 cd07266 HPCD_N_class_II N-term 44.1 46 0.001 17.1 3.1 28 52-80 5-33 (121)
197 cd07264 Glo_EDI_BRP_like_15 Th 44.0 24 0.00051 18.3 1.9 19 61-79 9-28 (125)
198 cd08361 PpCmtC_N N-terminal do 43.7 22 0.00048 18.8 1.8 19 62-80 16-35 (124)
199 PRK11478 putative lyase; Provi 43.7 44 0.00096 17.4 3.0 27 52-79 7-34 (129)
200 COG0346 GloA Lactoylglutathion 43.6 45 0.00097 16.8 3.1 19 63-81 13-32 (138)
201 cd07237 BphC1-RGP6_C_like C-te 43.1 57 0.0012 18.1 3.4 29 50-79 8-37 (154)
202 PRK04017 hypothetical protein; 43.1 20 0.00043 20.0 1.5 23 22-44 69-91 (132)
203 cd07243 2_3_CTD_C C-terminal d 42.9 41 0.00089 18.4 2.8 28 52-80 7-35 (143)
204 PRK13913 3-methyladenine DNA g 42.1 63 0.0014 19.6 3.7 40 31-78 126-165 (218)
205 TIGR01417 PTS_I_fam phosphoeno 42.0 1E+02 0.0022 21.7 5.0 44 37-81 482-525 (565)
206 cd07262 Glo_EDI_BRP_like_19 Th 41.5 52 0.0011 17.0 3.1 20 61-80 9-32 (123)
207 COG4904 Uncharacterized protei 41.4 23 0.00049 20.3 1.6 18 64-81 70-87 (174)
208 cd08357 Glo_EDI_BRP_like_18 Th 41.3 29 0.00062 17.9 2.0 20 61-80 8-28 (125)
209 KOG1201 Hydroxysteroid 17-beta 41.2 90 0.002 20.1 4.3 41 29-74 45-86 (300)
210 PF01751 Toprim: Toprim domain 40.9 40 0.00087 17.2 2.5 14 51-64 59-72 (100)
211 PRK02983 lysS lysyl-tRNA synth 40.8 1.1E+02 0.0023 23.5 5.2 57 1-62 432-488 (1094)
212 PF15538 Toxin_61: Putative to 40.7 25 0.00055 20.2 1.7 33 57-89 19-51 (157)
213 COG1832 Predicted CoA-binding 40.7 69 0.0015 18.1 4.6 37 42-79 89-125 (140)
214 TIGR03245 arg_AOST_alph argini 40.5 9.5 0.00021 24.7 0.1 32 53-84 221-252 (336)
215 PF00925 GTP_cyclohydro2: GTP 39.8 56 0.0012 18.8 3.1 45 27-81 123-167 (169)
216 cd07241 Glo_EDI_BRP_like_3 Thi 39.8 28 0.00061 17.8 1.8 19 61-79 10-29 (125)
217 cd07254 Glo_EDI_BRP_like_20 Th 39.7 53 0.0012 16.9 2.9 18 63-80 12-30 (120)
218 COG3250 LacZ Beta-galactosidas 39.7 95 0.0021 22.9 4.7 51 29-80 313-363 (808)
219 cd08347 PcpA_C_like C-terminal 39.5 56 0.0012 18.3 3.1 20 61-80 10-30 (157)
220 cd07242 Glo_EDI_BRP_like_6 Thi 39.3 58 0.0013 16.9 3.3 27 53-80 3-33 (128)
221 COG4475 Uncharacterized protei 39.0 80 0.0017 18.3 3.6 50 33-83 48-100 (180)
222 cd08355 Glo_EDI_BRP_like_14 Th 38.8 34 0.00073 17.7 2.0 20 61-80 8-28 (122)
223 PF01740 STAS: STAS domain; I 38.4 61 0.0013 16.8 3.8 39 35-77 65-103 (117)
224 cd04263 DUF619-NAGK-FABP DUF61 38.3 64 0.0014 17.0 5.2 44 15-64 31-74 (98)
225 COG0529 CysC Adenylylsulfate k 38.1 80 0.0017 18.9 3.5 47 37-87 38-84 (197)
226 cd09011 Glo_EDI_BRP_like_23 Th 38.1 35 0.00076 17.7 2.0 19 61-79 11-30 (120)
227 PF11009 DUF2847: Protein of u 38.0 67 0.0014 17.2 3.9 49 31-79 30-79 (105)
228 PF04555 XhoI: Restriction end 37.6 92 0.002 18.7 5.8 57 2-59 122-180 (196)
229 PF01585 G-patch: G-patch doma 37.5 32 0.00069 15.1 1.5 14 64-77 3-16 (45)
230 COG0807 RibA GTP cyclohydrolas 37.3 93 0.002 18.6 3.8 46 27-82 124-169 (193)
231 TIGR00068 glyox_I lactoylgluta 37.2 73 0.0016 17.4 3.3 29 50-79 16-45 (150)
232 cd08348 BphC2-C3-RGP6_C_like T 36.8 67 0.0015 16.9 3.4 20 61-80 10-30 (134)
233 PRK14831 undecaprenyl pyrophos 36.7 62 0.0013 20.1 3.1 33 28-61 42-74 (249)
234 cd07255 Glo_EDI_BRP_like_12 Th 36.2 66 0.0014 16.6 3.3 27 53-80 4-31 (125)
235 KOG2499 Beta-N-acetylhexosamin 36.1 59 0.0013 22.5 3.1 34 45-79 328-361 (542)
236 COG0271 BolA Stress-induced mo 35.3 70 0.0015 16.6 4.7 46 17-63 38-85 (90)
237 cd07041 STAS_RsbR_RsbS_like Su 34.8 69 0.0015 16.4 4.4 39 35-77 58-96 (109)
238 PRK09279 pyruvate phosphate di 34.7 1.2E+02 0.0026 22.7 4.6 50 33-83 808-858 (879)
239 COG1724 Predicted RNA binding 34.5 39 0.00085 16.4 1.6 17 64-80 10-26 (66)
240 PRK11892 pyruvate dehydrogenas 34.5 1.2E+02 0.0026 20.8 4.3 54 22-75 395-448 (464)
241 PF12652 CotJB: CotJB protein; 34.4 28 0.0006 17.5 1.2 19 55-73 20-38 (78)
242 COG2266 GTP:adenosylcobinamide 34.2 1E+02 0.0022 18.2 4.4 44 35-80 26-69 (177)
243 PF06399 GFRP: GTP cyclohydrol 34.1 40 0.00086 17.2 1.6 44 37-80 26-69 (83)
244 PRK13397 3-deoxy-7-phosphohept 33.9 1.1E+02 0.0024 19.1 3.9 39 28-72 59-97 (250)
245 cd07250 HPPD_C_like C-terminal 33.7 57 0.0012 19.0 2.6 29 52-80 4-34 (191)
246 cd07256 HPCD_C_class_II C-term 33.7 85 0.0018 17.5 3.2 27 52-79 4-31 (161)
247 PRK07758 hypothetical protein; 33.6 49 0.0011 17.4 2.0 21 31-52 72-92 (95)
248 cd07246 Glo_EDI_BRP_like_8 Thi 33.5 72 0.0016 16.2 3.1 19 62-80 11-30 (122)
249 PF07927 YcfA: YcfA-like prote 33.4 45 0.00097 15.0 1.7 14 66-79 4-17 (56)
250 PF02374 ArsA_ATPase: Anion-tr 33.2 1.2E+02 0.0027 19.2 4.1 47 33-79 11-57 (305)
251 PF06072 Herpes_US9: Alphaherp 32.9 27 0.00058 16.6 0.9 19 60-78 5-23 (60)
252 cd00218 GlcAT-I Beta1,3-glucur 32.9 88 0.0019 19.2 3.2 33 41-73 82-116 (223)
253 cd08359 Glo_EDI_BRP_like_22 Th 32.5 48 0.001 17.0 2.0 20 61-80 10-30 (119)
254 smart00443 G_patch glycine ric 32.3 47 0.001 14.5 1.7 15 63-77 4-18 (47)
255 COG1810 Uncharacterized protei 32.2 71 0.0015 19.6 2.8 59 19-79 80-139 (224)
256 cd09013 BphC-JF8_N_like N-term 32.2 46 0.001 17.2 1.9 28 52-80 7-35 (121)
257 PF06564 YhjQ: YhjQ protein; 31.9 1E+02 0.0022 19.1 3.5 45 32-78 11-55 (243)
258 PRK14829 undecaprenyl pyrophos 31.7 79 0.0017 19.6 3.0 33 27-60 35-67 (243)
259 cd08360 MhqB_like_C C-terminal 31.6 52 0.0011 17.5 2.1 27 53-80 5-32 (134)
260 TIGR00055 uppS undecaprenyl di 30.8 91 0.002 19.1 3.1 35 27-62 20-54 (226)
261 PHA03005 sulfhydryl oxidase; P 30.7 40 0.00087 17.6 1.4 17 26-42 2-18 (96)
262 PLN02300 lactoylglutathione ly 30.5 76 0.0017 19.7 2.9 28 51-79 24-52 (286)
263 COG5092 NMT1 N-myristoyl trans 30.5 1.1E+02 0.0023 20.2 3.4 32 16-47 164-195 (451)
264 PRK14837 undecaprenyl pyrophos 30.3 89 0.0019 19.2 3.0 35 27-62 27-61 (230)
265 PRK09525 lacZ beta-D-galactosi 30.3 1.7E+02 0.0037 22.3 4.8 49 31-80 365-413 (1027)
266 PF06414 Zeta_toxin: Zeta toxi 29.9 1.2E+02 0.0026 17.6 5.3 43 35-78 78-123 (199)
267 cd04883 ACT_AcuB C-terminal AC 29.6 70 0.0015 14.8 3.6 28 52-79 42-70 (72)
268 TIGR01361 DAHP_synth_Bsub phos 29.6 1.5E+02 0.0032 18.5 4.0 39 31-73 70-108 (260)
269 PF00376 MerR: MerR family reg 29.5 56 0.0012 13.7 1.7 14 63-76 12-25 (38)
270 PF04914 DltD_C: DltD C-termin 29.4 1.1E+02 0.0023 17.0 4.1 49 26-86 32-80 (130)
271 COG1943 Transposase and inacti 29.4 1.1E+02 0.0023 17.0 4.0 42 22-63 15-59 (136)
272 COG2818 Tag 3-methyladenine DN 29.4 60 0.0013 19.3 2.1 25 60-84 140-164 (188)
273 PF13289 SIR2_2: SIR2-like dom 29.2 99 0.0022 16.5 4.7 14 64-77 129-142 (143)
274 KOG1220 Phosphoglucomutase/pho 29.1 60 0.0013 22.9 2.3 33 57-89 369-401 (607)
275 TIGR03569 NeuB_NnaB N-acetylne 29.1 1.5E+02 0.0032 19.3 3.9 48 28-79 67-114 (329)
276 PF13592 HTH_33: Winged helix- 29.1 71 0.0015 14.8 2.6 32 42-80 10-41 (60)
277 COG3159 Uncharacterized protei 28.9 1.4E+02 0.0031 18.2 4.3 45 2-47 166-210 (218)
278 cd08345 Fosfomycin_RP Fosfomyc 28.7 60 0.0013 16.4 1.9 19 62-80 8-27 (113)
279 cd08354 Glo_EDI_BRP_like_13 Th 28.6 91 0.002 15.8 2.7 19 61-79 9-28 (122)
280 COG1437 CyaB Adenylate cyclase 28.6 85 0.0018 18.6 2.6 21 62-82 87-107 (178)
281 cd00595 NDPk Nucleoside diphos 28.6 1.1E+02 0.0024 16.7 3.6 47 22-73 4-51 (133)
282 PRK14827 undecaprenyl pyrophos 28.5 92 0.002 20.0 2.9 32 28-60 89-120 (296)
283 PRK11337 DNA-binding transcrip 28.5 18 0.00038 22.5 -0.1 32 49-80 46-77 (292)
284 PRK09318 bifunctional 3,4-dihy 28.4 1.5E+02 0.0032 19.9 3.9 32 49-82 325-356 (387)
285 PF13704 Glyco_tranf_2_4: Glyc 28.2 88 0.0019 15.6 4.6 35 38-73 6-40 (97)
286 PRK13494 chemoreceptor glutami 28.2 1.3E+02 0.0028 17.5 4.4 62 16-79 47-132 (163)
287 PF03118 RNA_pol_A_CTD: Bacter 28.1 52 0.0011 15.8 1.5 30 61-90 18-47 (66)
288 PF01297 TroA: Periplasmic sol 28.0 1.5E+02 0.0032 18.0 4.2 48 31-79 180-227 (256)
289 PF02593 dTMP_synthase: Thymid 28.0 1.3E+02 0.0027 18.4 3.3 59 19-79 76-136 (217)
290 cd08343 ED_TypeI_classII_C C-t 27.9 1E+02 0.0022 16.2 3.0 19 62-80 9-28 (131)
291 cd04777 HTH_MerR-like_sg1 Heli 27.2 55 0.0012 17.1 1.6 15 63-77 13-27 (107)
292 PLN02683 pyruvate dehydrogenas 27.2 1.7E+02 0.0036 19.2 4.0 54 22-75 283-336 (356)
293 PRK09319 bifunctional 3,4-dihy 27.2 1.5E+02 0.0032 21.0 3.9 32 49-82 348-379 (555)
294 TIGR01828 pyru_phos_dikin pyru 27.1 1.9E+02 0.0042 21.6 4.6 47 36-82 804-851 (856)
295 PF02064 MAS20: MAS20 protein 27.0 21 0.00046 19.5 0.0 7 26-32 24-30 (121)
296 KOG1412 Aspartate aminotransfe 27.0 97 0.0021 20.4 2.8 27 59-85 131-157 (410)
297 PF00411 Ribosomal_S11: Riboso 26.8 1.1E+02 0.0024 16.3 5.1 45 35-80 45-92 (110)
298 PLN02367 lactoylglutathione ly 26.7 62 0.0013 19.9 1.9 28 52-80 76-104 (233)
299 cd00145 POLBc DNA polymerase t 26.6 1.2E+02 0.0025 19.5 3.2 28 33-61 136-163 (323)
300 cd04197 eIF-2B_epsilon_N The N 26.6 1.2E+02 0.0025 17.9 3.1 36 35-71 30-65 (217)
301 cd07043 STAS_anti-anti-sigma_f 26.3 94 0.002 15.2 4.8 39 35-77 55-93 (99)
302 PRK14841 undecaprenyl pyrophos 26.1 1.2E+02 0.0026 18.7 3.1 35 27-62 24-58 (233)
303 PF02526 GBP_repeat: Glycophor 26.1 18 0.00039 15.1 -0.3 13 20-32 10-22 (38)
304 COG0607 PspE Rhodanese-related 26.0 1E+02 0.0022 15.5 2.7 25 54-78 65-89 (110)
305 PRK10240 undecaprenyl pyrophos 26.0 1.2E+02 0.0025 18.7 3.0 35 27-62 14-48 (229)
306 cd01017 AdcA Metal binding pro 25.9 1.7E+02 0.0037 18.2 4.4 47 31-78 201-247 (282)
307 PF01255 Prenyltransf: Putativ 25.9 97 0.0021 18.7 2.7 34 27-61 15-48 (223)
308 PF04659 Arch_fla_DE: Archaeal 25.9 1.1E+02 0.0025 16.1 3.3 38 35-80 17-54 (99)
309 TIGR03211 catechol_2_3 catecho 25.7 1.2E+02 0.0025 18.9 3.1 28 51-79 145-173 (303)
310 PF02776 TPP_enzyme_N: Thiamin 25.6 1.4E+02 0.003 16.9 4.6 39 40-79 5-44 (172)
311 COG0560 SerB Phosphoserine pho 25.4 1.6E+02 0.0035 17.6 3.5 37 40-78 83-119 (212)
312 PRK10340 ebgA cryptic beta-D-g 25.3 2.4E+02 0.0051 21.6 4.8 46 34-80 352-397 (1021)
313 PRK14832 undecaprenyl pyrophos 25.2 1.2E+02 0.0026 19.0 3.0 35 27-62 39-73 (253)
314 PF04339 DUF482: Protein of un 25.1 2.1E+02 0.0046 19.0 4.4 56 22-80 105-160 (370)
315 PRK09545 znuA high-affinity zi 25.1 1.9E+02 0.0042 18.4 4.1 44 34-78 236-279 (311)
316 PF04947 Pox_VLTF3: Poxvirus L 25.1 1.4E+02 0.0031 17.4 3.2 44 27-75 21-67 (171)
317 cd07239 BphC5-RK37_C_like C-te 24.8 1.3E+02 0.0028 16.4 3.0 25 54-79 7-32 (144)
318 cd05538 POLBc_Pol_II_B DNA pol 24.8 1.4E+02 0.0029 19.6 3.3 28 33-61 113-140 (347)
319 COG3185 4-hydroxyphenylpyruvat 24.8 97 0.0021 20.5 2.6 31 50-80 21-51 (363)
320 TIGR00377 ant_ant_sig anti-ant 24.7 1.1E+02 0.0024 15.5 4.3 39 36-78 61-99 (108)
321 PRK13978 ribose-5-phosphate is 24.7 1.8E+02 0.0039 17.9 4.3 24 57-80 51-74 (228)
322 cd01274 AIDA-1b AIDA-1b Phosph 24.7 1.3E+02 0.0029 16.5 4.0 42 18-60 7-48 (127)
323 PLN02831 Bifunctional GTP cycl 24.6 1.7E+02 0.0037 20.1 3.7 32 49-82 378-409 (450)
324 PRK14842 undecaprenyl pyrophos 24.6 1.4E+02 0.003 18.5 3.2 35 27-62 29-63 (241)
325 PF03102 NeuB: NeuB family; I 24.6 1.6E+02 0.0035 18.2 3.4 47 29-79 48-94 (241)
326 PF07991 IlvN: Acetohydroxy ac 24.3 1.6E+02 0.0034 17.2 4.3 46 33-82 11-56 (165)
327 PLN02540 methylenetetrahydrofo 24.3 2.7E+02 0.0058 19.8 4.8 44 33-77 244-287 (565)
328 PRK10638 glutaredoxin 3; Provi 24.3 1E+02 0.0022 15.0 3.9 39 40-79 16-54 (83)
329 COG0120 RpiA Ribose 5-phosphat 24.3 1.6E+02 0.0035 18.2 3.3 47 31-79 25-71 (227)
330 cd07244 FosA FosA, a Fosfomyci 24.3 1.2E+02 0.0025 15.7 3.5 18 62-79 11-29 (121)
331 cd00475 CIS_IPPS Cis (Z)-Isopr 24.3 1.4E+02 0.0031 18.2 3.1 35 27-62 21-55 (221)
332 PRK11177 phosphoenolpyruvate-p 24.3 2.7E+02 0.0058 19.8 5.0 45 37-82 483-527 (575)
333 PF00334 NDK: Nucleoside dipho 24.0 1.4E+02 0.0029 16.3 3.9 48 21-72 3-50 (135)
334 PRK14019 bifunctional 3,4-dihy 23.9 1.4E+02 0.0031 19.8 3.2 30 49-81 333-362 (367)
335 PF01722 BolA: BolA-like prote 23.8 1.1E+02 0.0024 15.1 4.5 44 17-61 27-72 (76)
336 PLN03042 Lactoylglutathione ly 23.8 1.2E+02 0.0026 17.8 2.7 20 61-80 36-56 (185)
337 PF01136 Peptidase_U32: Peptid 23.8 1.2E+02 0.0027 18.0 2.9 23 57-79 43-65 (233)
338 TIGR00505 ribA GTP cyclohydrol 23.8 1.7E+02 0.0036 17.3 3.9 44 28-81 123-166 (191)
339 cd07251 Glo_EDI_BRP_like_10 Th 23.8 96 0.0021 15.7 2.2 19 62-80 8-27 (121)
340 PRK12303 tumor necrosis factor 23.7 1.3E+02 0.0028 16.8 2.7 33 50-82 122-154 (192)
341 PRK13491 chemoreceptor glutami 23.6 1.8E+02 0.0039 17.6 4.4 63 16-80 51-134 (199)
342 PF12804 NTP_transf_3: MobA-li 23.6 1.4E+02 0.003 16.3 3.1 43 35-80 23-65 (160)
343 COG0473 LeuB Isocitrate/isopro 23.6 1.2E+02 0.0025 20.1 2.8 43 30-74 10-52 (348)
344 COG1428 Deoxynucleoside kinase 23.4 1.9E+02 0.0041 17.7 3.5 36 33-72 14-49 (216)
345 COG0283 Cmk Cytidylate kinase 23.4 76 0.0016 19.5 1.8 26 64-89 19-44 (222)
346 PRK00393 ribA GTP cyclohydrola 23.3 1.7E+02 0.0038 17.3 3.8 45 27-81 125-169 (197)
347 KOG0524 Pyruvate dehydrogenase 23.2 1.3E+02 0.0027 19.5 2.8 33 21-53 290-322 (359)
348 PTZ00349 dehydrodolichyl dipho 23.2 1.4E+02 0.003 19.5 3.1 35 27-62 40-74 (322)
349 cd05531 POLBc_B2 DNA polymeras 23.2 1.5E+02 0.0033 19.4 3.3 28 33-61 129-156 (352)
350 PF08373 RAP: RAP domain; Int 23.2 82 0.0018 14.1 1.7 15 66-80 23-37 (58)
351 COG3623 SgaU Putative L-xylulo 23.1 1.1E+02 0.0023 19.3 2.5 28 40-68 21-48 (287)
352 PRK14840 undecaprenyl pyrophos 23.1 1.5E+02 0.0032 18.6 3.1 35 27-62 43-77 (250)
353 PF13263 PHP_C: PHP-associated 23.1 90 0.002 14.2 1.8 19 61-79 2-20 (56)
354 TIGR00334 5S_RNA_mat_M5 ribonu 23.0 52 0.0011 19.3 1.1 21 22-42 51-71 (174)
355 COG0792 Predicted endonuclease 22.9 36 0.00077 18.5 0.4 25 65-89 11-37 (114)
356 PF14407 Frankia_peptide: Ribo 22.9 13 0.00028 17.8 -1.1 13 20-32 6-18 (61)
357 cd04412 NDPk7B Nucleoside diph 22.9 1.5E+02 0.0032 16.3 3.5 47 22-73 4-51 (134)
358 PRK05031 tRNA (uracil-5-)-meth 22.8 2.3E+02 0.005 18.5 4.1 52 20-80 289-341 (362)
359 TIGR02886 spore_II_AA anti-sig 22.7 1.2E+02 0.0027 15.4 5.3 40 35-78 56-95 (106)
360 PHA02554 13 neck protein; Prov 22.6 1.5E+02 0.0033 19.2 3.0 36 40-75 9-49 (311)
361 PRK13398 3-deoxy-7-phosphohept 22.5 2.1E+02 0.0046 18.0 4.0 37 32-72 73-109 (266)
362 cd06844 STAS Sulphate Transpor 22.4 1.2E+02 0.0027 15.3 4.7 39 35-77 56-94 (100)
363 COG0826 Collagenase and relate 22.4 1.7E+02 0.0038 19.2 3.4 24 55-78 118-141 (347)
364 PRK14839 undecaprenyl pyrophos 22.3 1.6E+02 0.0034 18.3 3.1 35 27-62 30-64 (239)
365 PRK14833 undecaprenyl pyrophos 22.3 1.7E+02 0.0036 18.1 3.2 35 27-62 25-59 (233)
366 PRK15482 transcriptional regul 22.2 27 0.00059 21.6 -0.2 30 51-80 36-65 (285)
367 PRK06724 hypothetical protein; 22.2 1.5E+02 0.0031 16.0 3.4 27 51-78 7-37 (128)
368 CHL00041 rps11 ribosomal prote 22.1 1.5E+02 0.0032 16.1 5.2 45 35-80 58-105 (116)
369 cd01018 ZntC Metal binding pro 22.1 2E+02 0.0044 17.7 4.3 49 30-79 197-245 (266)
370 PRK14178 bifunctional 5,10-met 22.1 1.9E+02 0.0041 18.4 3.5 48 31-79 5-60 (279)
371 cd02540 GT2_GlmU_N_bac N-termi 22.0 1.8E+02 0.0039 17.0 4.1 42 35-77 25-66 (229)
372 PRK10702 endonuclease III; Pro 22.0 1.9E+02 0.0042 17.4 4.3 40 32-79 115-154 (211)
373 PRK14181 bifunctional 5,10-met 22.0 1.8E+02 0.004 18.6 3.4 48 31-79 5-60 (287)
374 KOG0564 5,10-methylenetetrahyd 22.0 2.4E+02 0.0052 19.9 4.0 46 32-78 255-301 (590)
375 cd07038 TPP_PYR_PDC_IPDC_like 21.9 1.7E+02 0.0036 16.6 3.9 37 42-79 3-40 (162)
376 COG3351 FlaD Putative archaeal 21.9 1.7E+02 0.0038 17.7 3.1 37 35-79 107-143 (214)
377 PRK14835 undecaprenyl pyrophos 21.9 1.4E+02 0.003 18.9 2.9 32 29-61 64-95 (275)
378 PF02268 TFIIA_gamma_N: Transc 21.9 1E+02 0.0022 14.0 2.6 21 27-47 4-24 (49)
379 PRK09432 metF 5,10-methylenete 21.8 2.3E+02 0.0049 18.1 5.1 41 34-75 252-292 (296)
380 PRK14834 undecaprenyl pyrophos 21.7 1.7E+02 0.0036 18.3 3.1 33 29-62 37-69 (249)
381 cd05537 POLBc_Pol_II DNA polym 21.7 1.7E+02 0.0037 19.3 3.3 27 34-61 126-152 (371)
382 PF02021 UPF0102: Uncharacteri 21.7 99 0.0021 15.9 1.9 17 64-80 4-20 (93)
383 cd01212 JIP JNK-interacting pr 21.6 1.7E+02 0.0037 16.6 4.4 30 17-47 7-36 (148)
384 cd01107 HTH_BmrR Helix-Turn-He 21.5 86 0.0019 16.4 1.7 16 63-78 13-28 (108)
385 PRK11302 DNA-binding transcrip 21.5 30 0.00064 21.3 -0.1 44 34-79 21-64 (284)
386 PRK13488 chemoreceptor glutami 21.4 1.8E+02 0.0039 16.7 4.9 63 16-80 39-126 (157)
387 COG3494 Uncharacterized protei 21.4 1.2E+02 0.0025 19.3 2.4 22 65-86 114-135 (279)
388 PRK03681 hypA hydrogenase nick 21.3 1.5E+02 0.0033 15.9 3.2 38 32-70 4-47 (114)
389 KOG1257 NADP+-dependent malic 21.2 2.2E+02 0.0049 20.2 3.8 52 27-79 230-281 (582)
390 PF10887 DUF2686: Protein of u 21.2 1.5E+02 0.0032 18.4 2.7 39 38-80 205-244 (276)
391 PF03481 SUA5: Putative GTP-bi 21.2 1.5E+02 0.0033 15.9 3.6 37 33-71 82-118 (125)
392 cd09014 BphC-JF8_C_like C-term 21.2 1.7E+02 0.0037 16.4 3.3 19 61-79 15-34 (166)
393 PRK13749 transcriptional regul 21.1 89 0.0019 17.1 1.7 16 63-78 16-31 (121)
394 PLN02458 transferase, transfer 21.1 1.7E+02 0.0036 19.3 3.1 33 40-73 191-223 (346)
395 PRK08287 cobalt-precorrin-6Y C 21.1 1.8E+02 0.0039 16.6 3.6 43 35-79 110-153 (187)
396 PLN02672 methionine S-methyltr 21.1 2.7E+02 0.0058 21.6 4.4 48 30-80 252-301 (1082)
397 cd04182 GT_2_like_f GT_2_like_ 21.0 1.7E+02 0.0036 16.3 3.3 40 35-75 25-64 (186)
398 PRK10227 DNA-binding transcrip 21.0 89 0.0019 17.3 1.7 16 63-78 13-28 (135)
399 COG0022 AcoB Pyruvate/2-oxoglu 20.8 99 0.0022 20.1 2.1 34 22-55 255-288 (324)
400 PF01526 DDE_Tnp_Tn3: Tn3 tran 20.8 2.7E+02 0.0059 18.6 5.9 52 35-87 153-204 (388)
401 PF12294 DUF3626: Protein of u 20.8 50 0.0011 21.1 0.8 23 19-41 190-212 (297)
402 cd07042 STAS_SulP_like_sulfate 20.7 1.3E+02 0.0029 14.9 4.8 41 35-79 58-98 (107)
403 PF02799 NMT_C: Myristoyl-CoA: 20.7 2.1E+02 0.0045 17.2 3.7 41 35-79 124-164 (190)
404 PF08984 DUF1858: Domain of un 20.6 59 0.0013 15.0 0.9 21 61-81 12-32 (59)
405 TIGR03586 PseI pseudaminic aci 20.5 2.6E+02 0.0056 18.2 4.0 47 29-79 69-115 (327)
406 cd04882 ACT_Bt0572_2 C-termina 20.5 1E+02 0.0023 13.7 3.2 25 52-77 40-64 (65)
407 TIGR03632 bact_S11 30S ribosom 20.2 1.6E+02 0.0034 15.7 5.2 47 33-80 42-92 (108)
408 PRK00517 prmA ribosomal protei 20.1 2.2E+02 0.0048 17.3 3.9 44 36-80 193-236 (250)
409 COG2242 CobL Precorrin-6B meth 20.1 2.1E+02 0.0046 17.1 3.4 41 35-76 114-154 (187)
410 PRK09311 bifunctional 3,4-dihy 20.0 2.5E+02 0.0055 18.9 3.9 32 49-82 344-375 (402)
411 cd07258 PpCmtC_C C-terminal do 20.0 96 0.0021 17.0 1.8 20 61-80 8-28 (141)
412 PRK12595 bifunctional 3-deoxy- 20.0 2.6E+02 0.0056 18.5 3.9 38 32-73 164-201 (360)
No 1
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.80 E-value=8.4e-19 Score=88.71 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=67.9
Q ss_pred CceeEEEEeccCCc--cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCe
Q 034515 1 MVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (92)
Q Consensus 1 ~vG~~~~~~~~~~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~ 76 (92)
+||++.+....... ...+++..+.|+|+||++|+|+.|++.++++++ +.+++.+.+.+.++|..+.+||+|+||+
T Consensus 7 ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~-~~g~~~i~~~~~~~n~~~~~~~~k~Gf~ 83 (83)
T PF00583_consen 7 IVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWAR-KRGIKRIYLDVSPDNPAARRFYEKLGFE 83 (83)
T ss_dssp EEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHH-HTTESEEEEEEETTGHHHHHHHHHTTEE
T ss_pred EEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHH-hcCccEEEEEEeCCCHHHHHHHHHcCCC
Confidence 47888887766432 478999999999999999999999999999998 6999999999999999999999999996
No 2
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.78 E-value=2e-18 Score=99.71 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=67.9
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+...+ ...++++.+.|+|++||+|+|+++++.++++++ +.|++.+.+.+.++|.+|++||+|+||+..+.
T Consensus 110 iiG~i~l~~~~---~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~-~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~ 185 (191)
T TIGR02382 110 PRGYVTLRELN---DTDARIGLLAVFPGAQSRGIGAELMQTALNWCY-ARGLTRLRVATQMGNTAALRLYIRSGANIEST 185 (191)
T ss_pred EEEEEEEEecC---CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCCHHHHHHHHHcCCccccc
Confidence 46777776553 245689999899999999999999999999998 78999999999999999999999999998875
Q ss_pred h
Q 034515 81 S 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 186 ~ 186 (191)
T TIGR02382 186 A 186 (191)
T ss_pred e
Confidence 4
No 3
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.78 E-value=2.2e-18 Score=95.30 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=70.7
Q ss_pred ceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
||.+.+......+...++|..++|+++|||+|||+.|.+.+++.+. ..|+..|.+++...|.+|.++|+++||+..++.
T Consensus 69 VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~-~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~ 147 (165)
T KOG3139|consen 69 VGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMR-SRGYSEVVLETEVTNLSALRLYESLGFKRDKRL 147 (165)
T ss_pred EEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHH-HCCCcEEEEeccccchHHHHHHHhcCceEecce
Confidence 5666666555333467999999999999999999999999999998 899999999999999999999999999998765
Q ss_pred hh
Q 034515 82 EI 83 (92)
Q Consensus 82 ~~ 83 (92)
..
T Consensus 148 ~~ 149 (165)
T KOG3139|consen 148 FR 149 (165)
T ss_pred eE
Confidence 43
No 4
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.76 E-value=6.5e-18 Score=97.55 Aligned_cols=81 Identities=22% Similarity=0.289 Sum_probs=70.2
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||.+++...+......+++++++ +|+|||+|+|+++++.+++++++..+++++.+.+.++|.+|+++|+|+||+..+.
T Consensus 88 ~iG~i~l~~~~~~~~~~~eig~~i-~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~ 166 (194)
T PRK10809 88 IIGVANFSNVVRGSFHACYLGYSL-GQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGY 166 (194)
T ss_pred EEEEEEEEeecCCCeeeEEEEEEE-CHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEee
Confidence 478888876654333567888876 6999999999999999999999668999999999999999999999999999886
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 167 ~~ 168 (194)
T PRK10809 167 AK 168 (194)
T ss_pred ec
Confidence 54
No 5
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.75 E-value=1.4e-17 Score=95.09 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=70.3
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||.+++...+... ..+++++++ +|+|||+|+|++++..+++++++..+++++.+.+.++|.+|+++++|+||+..+.
T Consensus 78 ~iG~~~l~~~~~~~-~~~~ig~~i-~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 78 LIGVLSFNRIEPLN-KTAYIGYWL-DESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGC 155 (179)
T ss_pred EEEEEEEEeeccCC-CceEEEEEE-ChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeE
Confidence 47888887765443 678898875 7999999999999999999999678999999999999999999999999999986
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 156 ~~ 157 (179)
T PRK10151 156 LK 157 (179)
T ss_pred ec
Confidence 54
No 6
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.74 E-value=1.3e-17 Score=91.98 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=66.2
Q ss_pred CceeEEEEeccCC--ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 1 MVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 1 ~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
+||++.+...... ....+++..++|+|++||+|+|+.|++.++++++ +.+++.+.+.+...|..|++||+++||+..
T Consensus 58 ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~-~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~ 136 (144)
T PRK10146 58 VVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEAR-QAGAEMTELSTNVKRHDAHRFYLREGYEQS 136 (144)
T ss_pred EEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHH-HcCCcEEEEecCCCchHHHHHHHHcCCchh
Confidence 4788887654321 1124678889999999999999999999999998 789999999999999999999999999887
Q ss_pred c
Q 034515 79 S 79 (92)
Q Consensus 79 ~ 79 (92)
+
T Consensus 137 ~ 137 (144)
T PRK10146 137 H 137 (144)
T ss_pred h
Confidence 5
No 7
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.74 E-value=3.2e-17 Score=94.78 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=67.1
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+.... +...+++.+.|+|+|||+|+|+++++.++++++ +.|++.+.+.+.++|.+|.+||+|+||+..+.
T Consensus 113 ~vG~~~l~~~~---~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~-~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~ 188 (194)
T PRK10975 113 IQGFVTLRELN---DTDARIGLLAVFPGAQGRGIGARLMQAALNWCQ-ARGLTRLRVATQMGNLAALRLYIRSGANIEST 188 (194)
T ss_pred EEEEEEEEecC---CCceEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEE
Confidence 36777765543 245788888899999999999999999999998 78999999999999999999999999999885
Q ss_pred h
Q 034515 81 S 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 189 ~ 189 (194)
T PRK10975 189 A 189 (194)
T ss_pred E
Confidence 4
No 8
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.73 E-value=6.2e-17 Score=90.72 Aligned_cols=81 Identities=15% Similarity=0.296 Sum_probs=66.4
Q ss_pred CceeEEEEeccCC-ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 1 MVGDVNIYMNDLD-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 1 ~vG~~~~~~~~~~-~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+||++++...... ....++++ +.++|+|||+|+|+++++.+++++++..+++.+.+.+.++|.+|++||+|+||+..+
T Consensus 62 ~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g 140 (162)
T PRK10140 62 VVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEG 140 (162)
T ss_pred EEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEe
Confidence 4788887754321 12345665 556899999999999999999999854799999999999999999999999999998
Q ss_pred hhh
Q 034515 80 YSE 82 (92)
Q Consensus 80 ~~~ 82 (92)
...
T Consensus 141 ~~~ 143 (162)
T PRK10140 141 TGK 143 (162)
T ss_pred ecc
Confidence 654
No 9
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.72 E-value=7e-17 Score=90.79 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=66.0
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+...... .....+..++|+|++||+|+|+++++.++++++ ..++..+.+.+.++|.+|++||+|+||+....
T Consensus 51 ivG~~~~~~~~~~-~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~-~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~ 128 (157)
T TIGR02406 51 IVGFVSGYLRPDR-PDVLFVWQVAVDPRARGKGLARRLLEALLERVA-CERVRHLETTITPDNQASRALFKALARRRGVH 128 (157)
T ss_pred EEEEEEEEecCCC-CCeEEEEEEEEChHhccCcHHHHHHHHHHHHHH-hCCCCEEEEEEcCCCHHHHHHHHHhCcccCCC
Confidence 4677765433322 356788889999999999999999999999998 67899999999999999999999999988663
No 10
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.72 E-value=6.2e-17 Score=87.66 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=67.1
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+.... ....+..+.|+|+|||+|+|+++++.++++++ ..+++.+.+.+.+.|.+|.+||+++||+.++.
T Consensus 42 ~vg~~~~~~~~----~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 42 VVGYAGVQIVL----DEAHILNIAVKPEYQGQGIGRALLRELIDEAK-GRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred EEEEEEEEecC----CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 35666654332 34577888999999999999999999999998 67899999999999999999999999999997
Q ss_pred hhhH
Q 034515 81 SEIF 84 (92)
Q Consensus 81 ~~~~ 84 (92)
...+
T Consensus 117 ~~~~ 120 (131)
T TIGR01575 117 RRNY 120 (131)
T ss_pred cccc
Confidence 6544
No 11
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.72 E-value=1.2e-16 Score=87.79 Aligned_cols=74 Identities=36% Similarity=0.628 Sum_probs=63.6
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCe
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~ 76 (92)
+||.+++...+.. .+.++++.++ .|+|||+|+|++++..++++++++.+++++.+.+.++|.+|+++++|+||+
T Consensus 69 ~iG~i~~~~~~~~-~~~~eig~~i-~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 69 IIGFIGLYNIDKN-NNWAEIGYWI-GPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEE-EGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred eEEEeeeeecccC-CCccccccch-hHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 4788888655443 3789999776 589999999999999999999878999999999999999999999999996
No 12
>PRK03624 putative acetyltransferase; Provisional
Probab=99.72 E-value=5.6e-17 Score=88.64 Aligned_cols=77 Identities=21% Similarity=0.313 Sum_probs=64.5
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+.... ....+..+.|+|+|||+|+|+.+++.++++++ +.+++.+.+.+.++|..|.++|+|+||+..+.
T Consensus 56 ~vG~~~~~~~~----~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~ 130 (140)
T PRK03624 56 VVGTVMGGYDG----HRGWAYYLAVHPDFRGRGIGRALVARLEKKLI-ARGCPKINLQVREDNDAVLGFYEALGYEEQDR 130 (140)
T ss_pred EEEEEEeeccC----CCceEEEEEECHHHhCCCHHHHHHHHHHHHHH-HCCCCEEEEEEecCcHHHHHHHHHcCCccccE
Confidence 46666554221 33567778899999999999999999999998 77999999999999999999999999998875
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 131 ~~ 132 (140)
T PRK03624 131 IS 132 (140)
T ss_pred Ee
Confidence 43
No 13
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=90.64 Aligned_cols=66 Identities=23% Similarity=0.401 Sum_probs=61.3
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCc-cEEEEEecCCcHHHHHHHHhcCCeeechhhh
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGI-HVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~-~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (92)
.++|..++|+|+|||+|+|+.|++.+++.+. +.+. ..+.+.+.++|.+|++||+++||+..+....
T Consensus 91 ~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~-~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~ 157 (177)
T COG0456 91 EGHIYNLAVDPEYRGRGIGRALLDEALERLR-ERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKN 157 (177)
T ss_pred ccEEEEEEEChHhhcCCHHHHHHHHHHHHHH-hcCCCceEEEEEecCChHHHHHHHHcCCEEEeeehh
Confidence 7899999999999999999999999999998 6675 8999999999999999999999999986553
No 14
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9e-17 Score=91.38 Aligned_cols=82 Identities=32% Similarity=0.535 Sum_probs=72.5
Q ss_pred CceeEEEEeccC-CccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 1 MVGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 1 ~vG~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+||.+++...+. .....++++++. +|.|+|+|+|++++..++++++.+.+++++.+.+.+.|.+|+++++|+||+..+
T Consensus 79 ~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg 157 (187)
T COG1670 79 LIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEG 157 (187)
T ss_pred EEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhh
Confidence 478888887762 334778999998 699999999999999999999977999999999999999999999999999999
Q ss_pred hhhh
Q 034515 80 YSEI 83 (92)
Q Consensus 80 ~~~~ 83 (92)
....
T Consensus 158 ~~~~ 161 (187)
T COG1670 158 ELRQ 161 (187)
T ss_pred hhhh
Confidence 6543
No 15
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.71 E-value=1.9e-16 Score=90.92 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=68.3
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+...+... ..++++ +.++|+|||+|+|+++++.++++++++.+++++.+.+..+|.+|+++|+|+||+..+.
T Consensus 68 ~iG~~~~~~~~~~~-~~~~~~-~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 68 KAGLVELVEINHVH-RRAEFQ-IIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred EEEEEEEEeecCCC-CeEEEE-EEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 47888887665433 456776 5557999999999999999999998778999999999999999999999999999886
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 146 ~~ 147 (186)
T PRK15130 146 LI 147 (186)
T ss_pred Ee
Confidence 43
No 16
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.70 E-value=1.6e-16 Score=88.07 Aligned_cols=77 Identities=17% Similarity=0.293 Sum_probs=64.4
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+.... +...+..++++|+|||+|+|+++++.+++.+. +.+++.+.+.+.+.|.+|.++|+|+||+..+.
T Consensus 51 ~vG~~~~~~~~----~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~-~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~ 125 (146)
T PRK09491 51 MAAFAITQVVL----DEATLFNIAVDPDYQRQGLGRALLEHLIDELE-KRGVATLWLEVRASNAAAIALYESLGFNEVTI 125 (146)
T ss_pred EEEEEEEEeec----CceEEEEEEECHHHccCCHHHHHHHHHHHHHH-HCCCcEEEEEEccCCHHHHHHHHHcCCEEeee
Confidence 35666654332 23456777899999999999999999999987 78999999999999999999999999998875
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 126 ~~ 127 (146)
T PRK09491 126 RR 127 (146)
T ss_pred ee
Confidence 44
No 17
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.70 E-value=2.3e-16 Score=88.07 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=68.6
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++++...+... +..+++.+ ++|.+| +|+|++++..+++++++..+++.+.+.+.+.|.+|++||+|+||+..+.
T Consensus 62 ~vG~~~~~~~~~~~-~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~ 138 (156)
T TIGR03585 62 PIGVISFTDINLVH-KSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGV 138 (156)
T ss_pred EEEEEEEEecChhh-CeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeee
Confidence 47888887665332 55677777 689999 9999999999999998668999999999999999999999999999996
Q ss_pred hhh
Q 034515 81 SEI 83 (92)
Q Consensus 81 ~~~ 83 (92)
...
T Consensus 139 ~~~ 141 (156)
T TIGR03585 139 FRQ 141 (156)
T ss_pred ehh
Confidence 654
No 18
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.69 E-value=2.6e-16 Score=87.81 Aligned_cols=80 Identities=29% Similarity=0.505 Sum_probs=68.3
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+...+. ....+++..++. |++|++|+|+.++..++++++.+.|++++.+.+.+.|.+|++||+++||+..+.
T Consensus 62 iiG~~~~~~~~~-~~~~~~~~~~v~-~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 62 IIGYVSLRDIDP-YNHTAELSIYVS-PDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp EEEEEEEEESSS-GTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred EEEEEEEEeeec-cCCEEEEeeEEC-hhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 578888887766 347788886665 999999999999999999995589999999999999999999999999999996
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
.+
T Consensus 140 ~~ 141 (155)
T PF13420_consen 140 LK 141 (155)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 19
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.68 E-value=7.9e-16 Score=85.80 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=65.8
Q ss_pred CceeEEEEeccCC---ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~~~---~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
++|++.+...... .+....++.++++|++||+|+|+.++..++++++++.+++++.+.+.++|.+|+++|+|+||+.
T Consensus 59 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~ 138 (152)
T PF13523_consen 59 PIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRK 138 (152)
T ss_dssp EEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EE
T ss_pred EEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEE
Confidence 3677766654322 2456789999999999999999999999999999655999999999999999999999999999
Q ss_pred echhh
Q 034515 78 ISYSE 82 (92)
Q Consensus 78 ~~~~~ 82 (92)
++...
T Consensus 139 ~g~~~ 143 (152)
T PF13523_consen 139 VGEFE 143 (152)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 99654
No 20
>PTZ00330 acetyltransferase; Provisional
Probab=99.66 E-value=1.4e-15 Score=84.16 Aligned_cols=76 Identities=18% Similarity=0.360 Sum_probs=61.4
Q ss_pred CceeEEEEeccC---CccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
+||++.+..... .....+++..+.|+|+|||+|+|+.|++.++++++ ..++..+.+.+ |.+|.+||+++||+.
T Consensus 63 ~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~-~~~~~~l~l~~---n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 63 IVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIAR-SSGCYKVILDC---TEDMVAFYKKLGFRA 138 (147)
T ss_pred EEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEec---ChHHHHHHHHCCCEE
Confidence 478887764332 11235788889999999999999999999999998 77888876654 899999999999998
Q ss_pred ech
Q 034515 78 ISY 80 (92)
Q Consensus 78 ~~~ 80 (92)
...
T Consensus 139 ~~~ 141 (147)
T PTZ00330 139 CER 141 (147)
T ss_pred ece
Confidence 873
No 21
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.66 E-value=1.1e-15 Score=92.89 Aligned_cols=65 Identities=25% Similarity=0.414 Sum_probs=59.1
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
...++..+.|+|+|||+|+|+.|+..++++++ +.|+..+.+.+.++|..+.+||+|+||+..+..
T Consensus 225 ~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~-~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 225 ALGEVYVVGVDPAAQGRGLGDALTLIGLHHLA-ARGLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred ceeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 35677778899999999999999999999998 679999999999999999999999999988754
No 22
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.65 E-value=1.8e-15 Score=84.18 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=60.9
Q ss_pred CceeEEEEecc---CCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMND---LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~---~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
+||++.+.... ......+++..+.|+|+|||+|+|++|++.++++++ +.|++++.+.+.++|. +||+|+||+.
T Consensus 66 ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~-~~g~~~i~l~~~~~N~---~~y~k~GF~~ 141 (150)
T PLN02706 66 IIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHAR-SAGCYKVILDCSEENK---AFYEKCGYVR 141 (150)
T ss_pred EEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEeccccH---HHHHHCcCEE
Confidence 35666664221 111234567778999999999999999999999998 7899999999999995 5999999999
Q ss_pred ech
Q 034515 78 ISY 80 (92)
Q Consensus 78 ~~~ 80 (92)
.+.
T Consensus 142 ~g~ 144 (150)
T PLN02706 142 KEI 144 (150)
T ss_pred ehh
Confidence 873
No 23
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.65 E-value=7.3e-16 Score=93.00 Aligned_cols=79 Identities=24% Similarity=0.167 Sum_probs=67.7
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+.. +.. ...++|..++|+|+|||+|+|+.|++.++++++ +.|++.+.+.+.+.|.+|+++|+|+||+..++
T Consensus 169 iVG~~~~~~-~~~-~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~-~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 169 IIALASAEM-DPE-NGNAEMTDFATLPEYRGKGLAKILLAAMEKEMK-EKGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred EEEEEEEec-CCC-CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 366666532 222 356899999999999999999999999999998 78999999999999999999999999999996
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 246 l~ 247 (266)
T TIGR03827 246 LV 247 (266)
T ss_pred Ee
Confidence 54
No 24
>PRK10314 putative acyltransferase; Provisional
Probab=99.62 E-value=3.4e-15 Score=83.69 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=60.5
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+...... ....+++.++|+|+|||+|+|++|++.+++++....+...+.+.+ +..+..||+|+||+.++.
T Consensus 59 ~vg~~r~~~~~~~-~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a---~~~a~~fY~k~GF~~~g~ 134 (153)
T PRK10314 59 LVAYARILKSDDD-LEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGA---QAHLQNFYQSFGFIPVTE 134 (153)
T ss_pred EEEEEEEecCCCC-CCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEeh---HHHHHHHHHHCCCEECCC
Confidence 3666666543321 235789999999999999999999999999987444677776655 667889999999999985
Q ss_pred h
Q 034515 81 S 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 135 ~ 135 (153)
T PRK10314 135 V 135 (153)
T ss_pred c
Confidence 3
No 25
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.61 E-value=7.9e-15 Score=95.81 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.0
Q ss_pred CceeEEEEeccC---CccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMNDL---DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~~---~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
+||++.+..... +....+++..++|+|+|||+|+|+.|++.++++++ +.|+..+.+.+.++|.++++||+|+||+.
T Consensus 136 IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~-~~G~~~i~L~V~~~N~~Ai~fY~klGf~~ 214 (547)
T TIGR03103 136 IIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQ-SRGCAYMDLSVMHDNEQAIALYEKLGFRR 214 (547)
T ss_pred EEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcCCCHHHHHHHHHCCCEE
Confidence 467776543221 11234678889999999999999999999999998 78999999999999999999999999998
Q ss_pred ech
Q 034515 78 ISY 80 (92)
Q Consensus 78 ~~~ 80 (92)
++.
T Consensus 215 ~~~ 217 (547)
T TIGR03103 215 IPV 217 (547)
T ss_pred eeE
Confidence 874
No 26
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.60 E-value=8.1e-15 Score=74.97 Aligned_cols=63 Identities=27% Similarity=0.380 Sum_probs=52.9
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+.+.|+.+.++|++||+|+|+.++..+.+.+. +.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 20 ~~g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~-~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 20 DDGEIGGVYTLPEHRRRGLGSALVAALARELL-ERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CTCCEEEEEE-GGGTTSSHHHHHHHHHHHHHH-HTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred CCcEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 34799999999999999999999999999988 55655 57889999999999999999999864
No 27
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.58 E-value=3.4e-14 Score=71.43 Aligned_cols=66 Identities=26% Similarity=0.538 Sum_probs=52.2
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
+||++.+.... +...|..++|+|++||+|+|+.|++.+.+.+. . ..+.+.+ |+.+.+||+++||++
T Consensus 14 ivG~~~~~~~~----~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~-~---~~i~l~~---~~~~~~fY~~~GF~~ 79 (79)
T PF13508_consen 14 IVGFIRLWPNE----DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK-S---KKIFLFT---NPAAIKFYEKLGFEE 79 (79)
T ss_dssp EEEEEEEEETT----TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-C---SEEEEEE---EHHHHHHHHHTTEEE
T ss_pred EEEEEEEEEcC----CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC-C---CcEEEEE---cHHHHHHHHHCcCCC
Confidence 46777774444 47899999999999999999999999988875 3 3344444 788999999999985
No 28
>PRK07757 acetyltransferase; Provisional
Probab=99.56 E-value=3.6e-14 Score=79.06 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=59.1
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++|++.+.... +..+++..++|+|+|||+|+|++|++.+++++. +.++..+.+.+. +.+||+|+||+..+.
T Consensus 52 lvG~~~l~~~~---~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~-~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 52 IVGCCALHILW---EDLAEIRSLAVSEDYRGQGIGRMLVEACLEEAR-ELGVKRVFALTY-----QPEFFEKLGFREVDK 122 (152)
T ss_pred EEEEEEEEecc---CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCeEEEEeC-----cHHHHHHCCCEEccc
Confidence 46777776543 356788889999999999999999999999997 779988876553 358999999999986
Q ss_pred h
Q 034515 81 S 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 123 ~ 123 (152)
T PRK07757 123 E 123 (152)
T ss_pred c
Confidence 3
No 29
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.55 E-value=5.7e-14 Score=74.95 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=50.1
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
+||++.+. +..++..+.|+|+|||+|+|+.|++.+++.++ . +++.+.+. .|..+.+||+++||
T Consensus 55 ivG~~~~~-------~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~-~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 55 IVGFAWLE-------PDGEISHLYVLPEYRGRGIGRALLDAAEKEAK-D-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp EEEEEEEE-------TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT-T-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred EEEEEEEc-------CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHH-c-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 36776664 12238889999999999999999999999986 6 88877666 89999999999998
No 30
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=81.83 Aligned_cols=81 Identities=17% Similarity=0.089 Sum_probs=72.5
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||+..+....+...+..++..+-++++|||+|||+.|++.+...+. .++.+.|.++|...|.+|++||+++||.....
T Consensus 104 ~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~-~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 104 LVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLAD-SRHMRKVMLTVFSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred eeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHH-HHHhhhheeeeecccchhHHHHHHcCcccCCC
Confidence 47888888777666678899999999999999999999999999987 88999999999999999999999999998875
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
.+
T Consensus 183 sp 184 (202)
T KOG2488|consen 183 SP 184 (202)
T ss_pred CC
Confidence 44
No 31
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.54 E-value=5.3e-14 Score=86.90 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=62.2
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEec--CCcHHHHHHHHhcCCeee
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG--ESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~--~~n~~~~~~~~~~Gf~~~ 78 (92)
+||++.+... ...++|..++++|.+||+|+|+.|+..+++.++ +.|++.+.+.+. +.|..+++||+++||+..
T Consensus 245 ivG~~~~~~~----~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~-~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 245 IIGIFVFEKK----EGNLFIDDLCMSCRALGRGVETRMLRWLFEQAL-DLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred eEEEEEEEec----CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHH-HcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 3566554332 256789999999999999999999999999998 789999999885 589999999999999864
No 32
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.54 E-value=8.2e-14 Score=79.23 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=58.3
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++|++.+.... +..+++..++|+|+|||+|+|++|++.++++++ ..|++.+.+.+. +.+||+|+||+..+.
T Consensus 57 iiG~~~~~~~~---~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~-~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 57 VVGCGALHVMW---EDLAEIRTVAVDPAARGRGVGHAIVERLLDVAR-ELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred EEEEEEEeecC---CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHH-HcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 35666554332 246788899999999999999999999999998 789999887664 267999999999874
Q ss_pred h
Q 034515 81 S 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 128 ~ 128 (169)
T PRK07922 128 T 128 (169)
T ss_pred c
Confidence 3
No 33
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.1e-13 Score=78.27 Aligned_cols=80 Identities=29% Similarity=0.369 Sum_probs=65.5
Q ss_pred ceeEEEEeccC--CccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 2 VGDVNIYMNDL--DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 2 vG~~~~~~~~~--~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+|++.+..... ....+.+... .++|++||+|+|++|++.+++.+. ..|++.+.+.+..+|.+|+++++++||+..+
T Consensus 65 ~G~a~~~~fr~r~ay~~tve~Si-Yv~~~~~g~GiG~~Ll~~Li~~~~-~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G 142 (169)
T COG1247 65 LGYASAGPFRERPAYRHTVELSI-YLDPAARGKGLGKKLLQALITEAR-ALGVRELVAGIESDNLASIALHEKLGFEEVG 142 (169)
T ss_pred EEEEEeeeccCccccceEEEEEE-EECcccccccHHHHHHHHHHHHHH-hCCeEEEEEEEcCCCcHhHHHHHHCCCEEec
Confidence 46666655442 2234455554 457999999999999999999998 8999999999999999999999999999999
Q ss_pred hhhh
Q 034515 80 YSEI 83 (92)
Q Consensus 80 ~~~~ 83 (92)
..+.
T Consensus 143 ~~~~ 146 (169)
T COG1247 143 TFPE 146 (169)
T ss_pred cccc
Confidence 6554
No 34
>PHA01807 hypothetical protein
Probab=99.53 E-value=1e-13 Score=77.68 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=58.2
Q ss_pred CceeEEEEeccCCc-cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 1 MVGDVNIYMNDLDN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 1 ~vG~~~~~~~~~~~-~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
+||++.+....... .....+..+.|+|+|||+|+|+.|++.++++++ +.|++.+.+++.++|.++++||++.
T Consensus 64 lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar-~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 64 LAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAG-EGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred EEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEecCCcHHHHHHHHhc
Confidence 46887776544221 122334457899999999999999999999998 7899999999999999999999973
No 35
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.52 E-value=1.3e-13 Score=75.99 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=69.9
Q ss_pred CceeEEEEeccC-Cc-cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 1 MVGDVNIYMNDL-DN-LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 1 ~vG~~~~~~~~~-~~-~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
++|++.++..-+ +. ....+|..+.|.|.||++|+|+.|++.+-+.+. +.|+.++...+..-|.+|+.||+++|++..
T Consensus 66 ~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~-~~G~~rv~w~vldwN~rAi~lY~k~gaq~l 144 (163)
T KOG3216|consen 66 VAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEAD-KLGTPRVEWVVLDWNHRAILLYEKVGAQDL 144 (163)
T ss_pred eeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHH-HcCCCcEEEEEeccchhHHHHHHHhCcccc
Confidence 468888877653 22 366899999999999999999999999999997 899999999999999999999999999988
Q ss_pred ch
Q 034515 79 SY 80 (92)
Q Consensus 79 ~~ 80 (92)
..
T Consensus 145 ~~ 146 (163)
T KOG3216|consen 145 KE 146 (163)
T ss_pred ce
Confidence 75
No 36
>PRK10514 putative acetyltransferase; Provisional
Probab=99.52 E-value=8.9e-14 Score=76.84 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=48.7
Q ss_pred eeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
+..+.++|+|||+|+|+.|++.+++.+ +.+.+.+...|.+|++||+|+||+..+...
T Consensus 72 ~~~~~v~p~~rgkGig~~Ll~~~~~~~------~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 72 MEALFVDPDVRGCGVGRMLVEHALSLH------PELTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EeEEEECHHhccCCHHHHHHHHHHHhc------cccEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 446788999999999999999988764 346788999999999999999999998643
No 37
>PRK10562 putative acetyltransferase; Provisional
Probab=99.51 E-value=1.7e-13 Score=75.94 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=49.2
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
.++.+.|+|+|||+|+|+.+++.+++. ++.+.+.+..+|..|.+||+|+||+.++..
T Consensus 70 ~i~~~~v~~~~rg~G~g~~ll~~~~~~------~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~ 126 (145)
T PRK10562 70 FVGALFVAPKAVRRGIGKALMQHVQQR------YPHLSLEVYQKNQRAVNFYHAQGFRIVDSA 126 (145)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHhh------CCeEEEEEEcCChHHHHHHHHCCCEEcccc
Confidence 577789999999999999988887664 345778889999999999999999999853
No 38
>PHA00673 acetyltransferase domain containing protein
Probab=99.50 E-value=2.2e-13 Score=76.00 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=66.9
Q ss_pred CceeEEEEeccCC---ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMNDLD---NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~~~---~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
+||++.+...... ....+.|..+.|+|++||+|+|+.|++.++++++ +.|+..+++...|+ .....||.++|+++
T Consensus 66 vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar-~~Gc~~lyis~~p~-~~tv~fy~~~g~~~ 143 (154)
T PHA00673 66 LVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALAR-DLGATGLYVSGPTE-GRLVQLLPAAGYRE 143 (154)
T ss_pred EEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHH-HCCCCEEEEecCCC-ccchHHHHhCCchh
Confidence 4787777766522 2356799999999999999999999999999998 88999999877554 67999999999999
Q ss_pred echh
Q 034515 78 ISYS 81 (92)
Q Consensus 78 ~~~~ 81 (92)
..+.
T Consensus 144 ~~~~ 147 (154)
T PHA00673 144 TNRT 147 (154)
T ss_pred hchh
Confidence 8765
No 39
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.6e-13 Score=75.42 Aligned_cols=90 Identities=42% Similarity=0.704 Sum_probs=78.0
Q ss_pred CceeEEEEeccCCc-------cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 1 MVGDVNIYMNDLDN-------LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 1 ~vG~~~~~~~~~~~-------~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
+||.++++.....+ -..+++...+..|..||+|+|++++..+++|+....++.+....+..+|.+++++|+|+
T Consensus 84 MvGDvNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~ 163 (185)
T KOG4135|consen 84 MVGDVNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKF 163 (185)
T ss_pred hccceeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHh
Confidence 58999998776332 23588999999999999999999999999999877899999999999999999999999
Q ss_pred CCeeechhhhHHHhhhh
Q 034515 74 GFEDISYSEIFKEVSKL 90 (92)
Q Consensus 74 Gf~~~~~~~~~~~~~~~ 90 (92)
+|..+.....+..+.+.
T Consensus 164 ~f~q~~~ns~f~~v~Le 180 (185)
T KOG4135|consen 164 LFTQVFYNSSFPHVTLE 180 (185)
T ss_pred hheeeeeeccccceEEe
Confidence 99999987777766543
No 40
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.45 E-value=5.9e-13 Score=81.46 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=51.8
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
++..++|+|+|||+|+|+.|++.++++++ +.|++.+.+.+.+.| ..||+|+||+..+
T Consensus 27 ~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~i~L~t~~~~---~~fYek~GF~~~~ 83 (297)
T cd02169 27 VLKCVAVCPKYQGEGLALKIVSELINKAY-EEGIFHLFLFTKPKN---AKFFRGLGFKELA 83 (297)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEEcccH---HHHHHHCCCEEec
Confidence 58889999999999999999999999998 789999999886554 6899999999988
No 41
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.43 E-value=8.3e-13 Score=80.39 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=57.9
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+..... ...++..++|+|+|||+|+|+.|++.+++.+. ..+.+.+...|..+++||+++||+....
T Consensus 57 ~vG~~~~~~~~~---~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~-----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 57 IVGYANLVPARG---TDPAMAELVVHPAHRRRGIGRALIRALLAKGG-----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred EEEEEEEEcCCC---CcceEEEEEECHhhcCCCHHHHHHHHHHHhcc-----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 467777655432 23578888999999999999999999998764 3466778889999999999999988864
No 42
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.43 E-value=7.9e-13 Score=73.24 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=62.8
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++|++.+.... ..+.+++..++|+|++|++|+|.+|++.++..++ +.|++++++-+. .+..||+++||+.+..
T Consensus 51 viGC~aL~~~~--~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar-~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 51 VIGCAALHPVL--EEDLGELRSLAVHPDYRGSGRGERLLERLLADAR-ELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EEEEEeecccC--ccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHH-HcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 36777777422 2478999999999999999999999999999998 899999988773 6788999999999985
No 43
>PLN02825 amino-acid N-acetyltransferase
Probab=99.43 E-value=1.1e-12 Score=85.04 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=61.8
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+..... +..+++..++|+|+|||+|+|+.|++.++++++ +.|++.+.+.+ ..+.+||+++||+..+.
T Consensus 418 IVG~aal~~~~~--~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar-~~G~~~L~Llt----t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 418 IIACAALFPFFE--EKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAA-SLGLEKLFLLT----TRTADWFVRRGFSECSI 490 (515)
T ss_pred EEEEEEEEeecC--CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEEe----CcHHHHHHHCCCEEeCh
Confidence 467777664432 357899999999999999999999999999998 78999998866 34789999999999885
No 44
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.43 E-value=1.2e-12 Score=83.92 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=60.0
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++|++.+..... ...+++..++|+|+|||+|+|+.|++.++++++ +.|++.+.+. +..+.+||+++||+..+.
T Consensus 345 iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~-~~g~~~l~l~----~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 345 IIGCAALYPFPE--EKMGEMACLAVHPDYRGSGRGERLLKRIEQRAR-QLGLKRLFVL----TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred EEEEEEEEEcCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEe----cchHHHHHHHCcCEECCh
Confidence 367766654432 256789999999999999999999999999998 7899887654 346899999999999985
No 45
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.42 E-value=1.1e-12 Score=86.87 Aligned_cols=73 Identities=23% Similarity=0.254 Sum_probs=60.3
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+||++.+...+ ...+++..++|+|+|||+|+|+.|++.++++++ +.|++.+.+.+ .+.+||+|+||+..+.
T Consensus 514 IVG~~~l~~~~---~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak-~~g~~~i~l~~-----~a~~FYek~GF~~~~~ 584 (614)
T PRK12308 514 VTGCASLYIYD---SGLAEIRSLGVEAGWQVQGQGSALVQYLVEKAR-QMAIKKVFVLT-----RVPEFFMKQGFSPTSK 584 (614)
T ss_pred EEEEEEEEEcC---CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HCCCCEEEEee-----CcHHHHHHCCCEECCc
Confidence 46777766543 245789999999999999999999999999998 78999887754 2468999999999986
Q ss_pred hh
Q 034515 81 SE 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 585 ~~ 586 (614)
T PRK12308 585 SL 586 (614)
T ss_pred cc
Confidence 54
No 46
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.38 E-value=3.1e-12 Score=76.18 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=57.6
Q ss_pred cCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 11 DLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 11 ~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
....+.++.|.-+.++|+|||+|||+.++..+...+. ..|.. ..+.+..+|+.|.++|+|+||+..+..
T Consensus 195 ~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL-~eGk~-~~L~~~~~N~~A~~iY~riGF~~~g~~ 263 (268)
T COG3393 195 AAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLL-AEGKI-PCLFVNSDNPVARRIYQRIGFREIGEF 263 (268)
T ss_pred cccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHH-hCCCe-eEEEEecCCHHHHHHHHHhCCeecceE
Confidence 3444678899999999999999999999999999887 44433 355566999999999999999999843
No 47
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.38 E-value=3.1e-12 Score=81.82 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=60.0
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++|++.+..... +..+++..++|+|+|||+|+|+.|++.+++++. +.|++.+.+. ..| +.+||+++||+..+.
T Consensus 333 iVG~~~~~~~~~--~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~-~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 333 IIGCAALYPYAE--EDCGEMACLAVSPEYQDGGRGERLLAHIEDRAR-QMGISRLFVL--TTR--TGHWFRERGFQTASV 405 (429)
T ss_pred EEEEEEEEecCC--CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEe--ecc--hHHHHHHCCCEECCh
Confidence 467777765432 356899999999999999999999999999998 7899877543 334 579999999999986
Q ss_pred h
Q 034515 81 S 81 (92)
Q Consensus 81 ~ 81 (92)
.
T Consensus 406 ~ 406 (429)
T TIGR01890 406 D 406 (429)
T ss_pred h
Confidence 3
No 48
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.37 E-value=3e-12 Score=69.26 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=53.9
Q ss_pred CceeEEEEeccC---C-ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCe
Q 034515 1 MVGDVNIYMNDL---D-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (92)
Q Consensus 1 ~vG~~~~~~~~~---~-~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~ 76 (92)
+||.+.+..... + ..+.+.+..++|+|+|||+|+++.|++.+++.++ +.|+..+.+.. .+..||+++||+
T Consensus 52 ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~-~~g~~~~~l~~-----~~~~~Y~~~G~~ 125 (127)
T PF13527_consen 52 IVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERAR-ERGVPFIFLFP-----SSPPFYRRFGFE 125 (127)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-HTT-SEEEEE------SSHHHHHHTTEE
T ss_pred EEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHH-hCCCCEEEEec-----CChhhhhcCCCE
Confidence 467777765431 1 1246899999999999999999999999999998 66888776654 236899999998
Q ss_pred ee
Q 034515 77 DI 78 (92)
Q Consensus 77 ~~ 78 (92)
.+
T Consensus 126 ~~ 127 (127)
T PF13527_consen 126 YA 127 (127)
T ss_dssp EE
T ss_pred EC
Confidence 63
No 49
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.36 E-value=2.5e-12 Score=65.41 Aligned_cols=63 Identities=29% Similarity=0.455 Sum_probs=58.8
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+.++++....+.|+|||+|+.+.++..+.+.+. +.|++ +++.++++|+.++++.+++||....
T Consensus 17 dqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~-~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 17 DQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLH-KLGFP-FYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred cccccccccccCHhHhcCCHHHHHHHHHHHHHH-HCCCC-eEeehHhccHHHHHHHHHCCCeecC
Confidence 367899999999999999999999999999997 88998 6999999999999999999999876
No 50
>PRK09831 putative acyltransferase; Provisional
Probab=99.36 E-value=3.1e-12 Score=71.07 Aligned_cols=55 Identities=11% Similarity=0.361 Sum_probs=45.8
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
++..+.|+|++||+|+|+.|++.+++.+. . +.+. .|..+.+||+|+||+.++..+
T Consensus 74 ~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~-~-------l~v~-~~~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 74 YIDMLFVDPEYTRRGVASALLKPLIKSES-E-------LTVD-ASITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeeeEEECHHHcCCCHHHHHHHHHHHHhh-h-------eEee-cchhhHHHHHHCCCEEeeccc
Confidence 56778899999999999999999999876 3 2233 367899999999999999754
No 51
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.36 E-value=4.2e-12 Score=68.79 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=61.9
Q ss_pred CceeEEEEecc---CCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMND---LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~---~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
++|..++.... ......+++..++|++++||+++|+.+++.+...++ ..|+..+.+.+.+.|. .||+|+||..
T Consensus 66 vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k-~lgcYKi~LdC~~~nv---~FYeKcG~s~ 141 (150)
T KOG3396|consen 66 VIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAK-SLGCYKIILDCDPKNV---KFYEKCGYSN 141 (150)
T ss_pred EEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHH-hcCcEEEEEecchhhh---hHHHHcCccc
Confidence 35666665432 122356789999999999999999999999999998 9999999999988874 5999999998
Q ss_pred ec
Q 034515 78 IS 79 (92)
Q Consensus 78 ~~ 79 (92)
.+
T Consensus 142 ~~ 143 (150)
T KOG3396|consen 142 AG 143 (150)
T ss_pred cc
Confidence 76
No 52
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=68.86 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=71.6
Q ss_pred CceeEEEEecc--CCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHH-hcCCee
Q 034515 1 MVGDVNIYMND--LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~--~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~-~~Gf~~ 77 (92)
|||++-..... .+.++.++|..+.|...||+.|+|++|+........+..+.+.+.+.+..+|.+++.+|+ .+||+.
T Consensus 53 iVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v 132 (193)
T KOG3235|consen 53 IVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVV 132 (193)
T ss_pred EEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEE
Confidence 46777666544 223457999999999999999999999999888777788999999999999999999999 999999
Q ss_pred echhhhH
Q 034515 78 ISYSEIF 84 (92)
Q Consensus 78 ~~~~~~~ 84 (92)
.+..+.|
T Consensus 133 ~eve~kY 139 (193)
T KOG3235|consen 133 CEVEPKY 139 (193)
T ss_pred eeccccc
Confidence 9876544
No 53
>PRK13688 hypothetical protein; Provisional
Probab=99.31 E-value=1.6e-11 Score=69.04 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=44.0
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
..++|..++|+|+|||+|+|+.|++.+.+ .++. + .+...| .+.+||+|+||+..+..
T Consensus 78 ~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~-----~~~~-~--~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 78 DYLELWKLEVLPKYQNRGYGEMLVDFAKS-----FQLP-I--KTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred CeEEEEEEEECHHHcCCCHHHHHHHHHHH-----hCCe-E--EEEecc-chHHHHHhCCCEEeEEe
Confidence 56789999999999999999999885433 2333 2 233445 47899999999999865
No 54
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=69.54 Aligned_cols=79 Identities=23% Similarity=0.200 Sum_probs=65.3
Q ss_pred CceeEEEEeccCCc--cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 1 MVGDVNIYMNDLDN--LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 1 ~vG~~~~~~~~~~~--~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
+||.+++...-.+. ..-++|++-+ .|+.||+|||++++...++.++ ..|++.|..+|+++|.+|.+.-+++|=...
T Consensus 80 ivG~i~lRh~Ln~~ll~~gGHIGY~V-rPseR~KGYA~emLkl~L~~ar-~lgi~~Vlvtcd~dN~ASrkvI~~NGGile 157 (174)
T COG3981 80 IVGFINLRHQLNDFLLEEGGHIGYSV-RPSERRKGYAKEMLKLALEKAR-ELGIKKVLVTCDKDNIASRKVIEANGGILE 157 (174)
T ss_pred EEEEEEeeeecchHHHhcCCccccee-ChhhhccCHHHHHHHHHHHHHH-HcCCCeEEEEeCCCCchhhHHHHhcCCEEe
Confidence 46777776543221 1246788777 5999999999999999999998 899999999999999999999999998877
Q ss_pred chh
Q 034515 79 SYS 81 (92)
Q Consensus 79 ~~~ 81 (92)
+..
T Consensus 158 ~~~ 160 (174)
T COG3981 158 NEF 160 (174)
T ss_pred EEE
Confidence 643
No 55
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.25 E-value=4.4e-11 Score=74.32 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=53.4
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
.+..++|+|+|||+|+|+.|+..+++.++ +.|+..+.+.+.+.| ..||+++||+..+...
T Consensus 52 ~ik~vaV~~~~rG~Glg~~L~~~L~~~a~-~~G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~ 111 (332)
T TIGR00124 52 VIKCVAIDESLRGEGLALQLMTELENLAY-ELGRFHLFIFTKPEY---AALFEYCGFKTLAEAK 111 (332)
T ss_pred EEEEEEEcHHHcCCCHHHHHHHHHHHHHH-HcCCCEEEEEECchH---HHHHHHcCCEEeeeec
Confidence 47899999999999999999999999998 789999998887665 4699999999998654
No 56
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.23 E-value=5.6e-11 Score=65.97 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=65.6
Q ss_pred eeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
|++............+++.-+.|.|+||+.|+|+.++..+++... ..+...+.+.+..+|+-|+.+|+++||..-.++.
T Consensus 55 gyimgk~Eg~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d-~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi 133 (173)
T KOG3234|consen 55 GYIMGKVEGKDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSD-VDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVI 133 (173)
T ss_pred EEEeeeccccCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHH-hhhhheeeeeeeccchhHHHHHHhcCceEEEeee
Confidence 444443333333345889999999999999999999999999886 6688899999999999999999999999888655
Q ss_pred hH
Q 034515 83 IF 84 (92)
Q Consensus 83 ~~ 84 (92)
.|
T Consensus 134 ~Y 135 (173)
T KOG3234|consen 134 EY 135 (173)
T ss_pred ee
Confidence 43
No 57
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.19 E-value=6.1e-11 Score=66.97 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=60.7
Q ss_pred ceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
||...+...... ++.+.+..++|+.+.||+|+|+.+++.++.|++ ..|++.+++.+... .+||+++||+..+-+
T Consensus 69 igH~rLS~i~n~-~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R-~~gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi 142 (225)
T KOG3397|consen 69 LGHSRLSHLPNR-DHALWVESVVVKKDQRGLGFGKFLMKSTEKWMR-EKGFNEAYLSTDDQ----CRFYESLGYEKCDPI 142 (225)
T ss_pred eeeeccccCCCC-CceeEEEEEEEehhhccccHHHHHHHHHHHHHH-Hhhhhheeeecccc----hhhhhhhcccccCce
Confidence 445555444433 478999999999999999999999999999999 78899999988554 579999999987743
No 58
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.19 E-value=7.1e-11 Score=67.77 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=61.8
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHhhccC-ccEEEEEecCCcHHHHHHHHhcCCeeechhhhHHH
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 86 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~ 86 (92)
..+..+.|.|.||.+|||+.+++.+.+++. ... ++.+.+.+...|..+..||++.||+.+.....|..
T Consensus 90 ~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~-~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~ 158 (187)
T KOG3138|consen 90 IYILSLGVLPRYRNKGIGSKLLEFVKKYCS-EAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYS 158 (187)
T ss_pred eEEEeecccHHHHhcchHHHHHHHHHHHHh-cccccceEEEEEEeCCCcHHHHHHhcCceEeeccccccc
Confidence 678899999999999999999999999998 555 89999999999999999999999999998776543
No 59
>PRK01346 hypothetical protein; Provisional
Probab=99.18 E-value=1.2e-10 Score=74.11 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=57.6
Q ss_pred CceeEEEEeccC----C-ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 1 MVGDVNIYMNDL----D-NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 1 ~vG~~~~~~~~~----~-~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
+||++.+..... . ..+.+.+..++|+|+|||+|+|++|++.+++.++ +.|+..+.+.+.+ ..||+|+||
T Consensus 58 lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~-~~g~~~~~L~~~~-----~~~Y~r~Gf 131 (411)
T PRK01346 58 VVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIR-ERGEPVAALTASE-----GGIYGRFGY 131 (411)
T ss_pred EEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHH-HCCCcEEEEECCc-----hhhHhhCCC
Confidence 466666654331 1 1246889999999999999999999999999998 7788877776533 369999999
Q ss_pred eeech
Q 034515 76 EDISY 80 (92)
Q Consensus 76 ~~~~~ 80 (92)
.....
T Consensus 132 ~~~~~ 136 (411)
T PRK01346 132 GPATY 136 (411)
T ss_pred eeccc
Confidence 98864
No 60
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.16 E-value=2.9e-10 Score=74.21 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=45.8
Q ss_pred ChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 26 ~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+|+|||+|+|+.|++.+++.++ +.|++.+.+. .|..+++||+|+||+..+.
T Consensus 466 ~~~~rg~GiG~~Ll~~ae~~Ar-~~G~~~i~v~---s~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 466 DDEWQHRGYGRRLLEEAERIAA-EEGSEKILVI---SGIGVREYYRKLGYELDGP 516 (522)
T ss_pred ChhHhCcCHHHHHHHHHHHHHH-HCCCCEEEEe---eCchHHHHHHHCCCEEEcc
Confidence 5899999999999999999998 6799998763 4889999999999998873
No 61
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.07 E-value=1.3e-09 Score=59.86 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=57.8
Q ss_pred ceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
++++.+....... ....|+.++|.|++||+|+|.+|+..+++.+...+--+.+.+. .......||.+.||..++..
T Consensus 62 vAyaRLl~~~~~~-~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~---AQahLq~fYa~~GFv~~~e~ 137 (155)
T COG2153 62 VAYARLLPPGAEY-EEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLG---AQAHLQDFYASFGFVRVGEE 137 (155)
T ss_pred EEEEecCCCCCCc-CceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEe---hHHHHHHHHHHhCcEEcCch
Confidence 3444454444433 2267999999999999999999999999999855544555443 46778999999999998853
No 62
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=99.05 E-value=1.6e-09 Score=58.65 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=59.4
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEec--CCcHHHHHHHHhcCCeeech
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG--ESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~--~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++..+++.++|....||+|+|+.+.+.+.+++. ..|...+.|++. +.|++|-.|...+||.++++
T Consensus 82 e~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae-~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~ 148 (167)
T COG3818 82 ENFFYVDRVVVASRARGRGVARALYADLFSYAE-LAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQ 148 (167)
T ss_pred CceEEEEEEEEEecccccchHHHHHHHHHHHHH-hcCCceEEEEecCCCCChHHHHHhhhcCceEccc
Confidence 355789999999999999999999999999997 889999999886 66999999999999999995
No 63
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.05 E-value=1e-09 Score=62.32 Aligned_cols=75 Identities=15% Similarity=0.225 Sum_probs=62.4
Q ss_pred CceeEEEEeccCC--ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 1 MVGDVNIYMNDLD--NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 1 ~vG~~~~~~~~~~--~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
+||.+-+...... ......+.-++|+|++||+|||++|++..++.++ ..|...+.+--++. +|.+.||+..
T Consensus 57 vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~-~~G~~~v~vlGdp~------YY~rfGF~~~ 129 (171)
T COG3153 57 VVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALR-LAGASAVVVLGDPT------YYSRFGFEPA 129 (171)
T ss_pred EEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHH-HCCCCEEEEecCcc------cccccCcEEc
Confidence 4788888776654 3456788999999999999999999999999998 88999887766554 8999999998
Q ss_pred chhh
Q 034515 79 SYSE 82 (92)
Q Consensus 79 ~~~~ 82 (92)
....
T Consensus 130 ~~~~ 133 (171)
T COG3153 130 AGAK 133 (171)
T ss_pred cccc
Confidence 8544
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=99.05 E-value=1.6e-09 Score=51.03 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=45.5
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEE
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRA 57 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~ 57 (92)
++|++.+...+.. ++.+++..+.++|+|||+|+|++++..++++++ +.+++.+.+
T Consensus 10 ~ig~~~~~~~~~~-~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~-~~~~~~v~~ 64 (65)
T cd04301 10 IVGFASLSPDGSG-GDTAYIGDLAVLPEYRGKGIGSALLEAAEEEAR-ERGAKRLRL 64 (65)
T ss_pred EEEEEEEEecCCC-CccEEEEEEEECHHHcCcCHHHHHHHHHHHHHH-HcCCcEEEe
Confidence 3677777766542 377899999999999999999999999999998 678887754
No 65
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.02 E-value=1.6e-09 Score=65.48 Aligned_cols=63 Identities=29% Similarity=0.275 Sum_probs=49.8
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (92)
+..+|+... +|+|||+|+|+.+...++..+. +.|+...+.. .|.+|.++.+|+||+.......
T Consensus 188 ~~~EI~I~T-~~~yR~kGLA~~~aa~~I~~Cl-~~~l~P~WDc---~N~~S~~lA~kLGf~~~~~Y~~ 250 (265)
T PF12746_consen 188 NGIEIDIET-HPEYRGKGLATAVAAAFILECL-ENGLYPSWDC---HNLASIALAEKLGFHFDFEYTA 250 (265)
T ss_dssp TEEEEEEEE--CCCTTSSHHHHHHHHHHHHHH-HTT-EEE-EE---SSHHHHHHHHHCT--EEEEEEE
T ss_pred CEEEEEEEE-CHHhhcCCHHHHHHHHHHHHHH-HCCCCcCeeC---CCHHHHHHHHHcCCcccceeee
Confidence 557888777 5999999999999999999998 7787775554 5999999999999999886543
No 66
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.77 E-value=1.4e-08 Score=56.56 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=51.8
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
....|..++++|+||.+|+|+.|+...++.+..+.-.+++.+.+ ..+...||+++||+.++.
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~---h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALIC---HDPLVPFYERFGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeee---cCCccchhHhcCceeecc
Confidence 45889999999999999999999999777776565566666655 566899999999999985
No 67
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.74 E-value=4.2e-08 Score=56.95 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=45.4
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHh------------------------hccCccEEEEEecCCcHHHHHHHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV------------------------ENFGIHVFRAKIGESNGASLRLFQ 71 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~------------------------~~~~~~~i~~~~~~~n~~~~~~~~ 71 (92)
..+-|-.++|+|++|++|||+++++.+.+++. ...++..+-+.. .-+....+|+.
T Consensus 89 ~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSF-G~t~~Ll~FW~ 167 (196)
T PF13718_consen 89 SGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSF-GATPELLKFWQ 167 (196)
T ss_dssp EEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEE-E--HHHHHHHH
T ss_pred cceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEecc-CCCHHHHHHHH
Confidence 34678899999999999999999999999982 145777665544 44688999999
Q ss_pred hcCCeeechh
Q 034515 72 KLGFEDISYS 81 (92)
Q Consensus 72 ~~Gf~~~~~~ 81 (92)
|+||.++...
T Consensus 168 k~gf~pv~l~ 177 (196)
T PF13718_consen 168 KNGFVPVYLG 177 (196)
T ss_dssp CTT-EEEEE-
T ss_pred HCCcEEEEEe
Confidence 9999998743
No 68
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.73 E-value=1.3e-07 Score=47.45 Aligned_cols=62 Identities=19% Similarity=0.321 Sum_probs=44.6
Q ss_pred ceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
+|.+.+.. .++...+....|.|++||+|+|+.|++.++++++ +.|.+.+ +.-+.+..++++.
T Consensus 11 ~a~l~Y~~----~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~-~~~~kv~-----p~C~y~~~~~~~h 72 (78)
T PF14542_consen 11 IAELTYRE----DGGVIVITHTEVPPELRGQGIAKKLVEAALDYAR-ENGLKVV-----PTCSYVAKYFRRH 72 (78)
T ss_dssp EEEEEEEE----SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHH-HTT-EEE-----ETSHHHHHHHHH-
T ss_pred EEEEEEEe----CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHH-HCCCEEE-----EECHHHHHHHHhC
Confidence 35555533 2478899999999999999999999999999998 6676633 3346666666553
No 69
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.44 E-value=7.1e-07 Score=60.53 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=53.0
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhh
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (92)
-.-|..++|+|++|++|||+++++.+.+++. .++..+-. -.--++...+|+.|+||.++...+.
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~--~~~Dwlgv-sFG~t~~L~rFW~rnGF~pVhls~~ 594 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR--KGLDWLGV-SFGYTEELLRFWLRNGFVPVHLSPT 594 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh--cCCCEEee-ccCCCHHHHHHHHHcCeEEEEecCc
Confidence 3578899999999999999999999999985 46666544 4456788999999999999985543
No 70
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.42 E-value=5.3e-07 Score=56.25 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=50.9
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+++.|..++++|+|||+|+.+.|+...++... +.|++...+ .+.+.++|+|.||+.-..
T Consensus 69 ~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~-~kG~p~s~L-----~P~s~~iYrKfGye~asn 127 (389)
T COG4552 69 PTAGIAGVASAPTYRRRGALRALLAHSLREIA-RKGYPVSAL-----HPFSGGIYRKFGYEYASN 127 (389)
T ss_pred eccceEEEEechhhccCcHHHHHHHHHHHHHH-HcCCeeEEe-----ccCchhhHhhccccccce
Confidence 56889999999999999999999999999997 889886555 345778999999998764
No 71
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.41 E-value=6.9e-07 Score=46.14 Aligned_cols=44 Identities=30% Similarity=0.528 Sum_probs=39.5
Q ss_pred eeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 23 MIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 23 ~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
+.|+|++||+|+|+.|++.+++++. ..++. .|..+..++.+.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~-~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWAR-KRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHH-HcCce--------ehHHHHHHHHhcCC
Confidence 8889999999999999999999998 65655 78899999999998
No 72
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.28 E-value=2.8e-06 Score=44.35 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=37.8
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEe
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI 59 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~ 59 (92)
++...|..-.|.+++||||+|+.|++.+++.++ +.|.+.+-++.
T Consensus 37 ~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar-~~g~kiiP~Cs 80 (99)
T COG2388 37 ENLIIIDHTYVPDELRGQGIAQKLVEKALEEAR-EAGLKIIPLCS 80 (99)
T ss_pred CCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHH-HcCCeEcccch
Confidence 467889999999999999999999999999998 77877655443
No 73
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.16 E-value=1.5e-05 Score=43.34 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=42.6
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecC----CcHHHHHHHHhcCCeeec
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE----SNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~----~n~~~~~~~~~~Gf~~~~ 79 (92)
..+.+..+.|.+--|++|+|..|++.+.+.+ .+++..++.... +-..+..|...+||...+
T Consensus 60 ~~~~L~~l~VRevTRrRGVG~yLlee~~rq~---p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 60 QQAELSDLCVREVTRRRGVGLYLLEEVLRQL---PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQS 124 (128)
T ss_dssp TEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS----S--EEEE--TT-S--THHHHHHHHHHHT-EE-S
T ss_pred cceEEeeEEEeeccccccHHHHHHHHHHHHC---CCCcEEEEecCCCcccchHHHHHHHHHcCccccC
Confidence 5789999999999999999999999999886 355655555442 346678899999996654
No 74
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=97.91 E-value=8.9e-05 Score=39.94 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=49.1
Q ss_pred CceeEEEEeccC-CccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 1 MVGDVNIYMNDL-DNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 1 ~vG~~~~~~~~~-~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
+||++-+-+... ..+....+..+.+-..||++|.|+++...+..... |.- ...+..+|.+|+.++++.-+..
T Consensus 48 ~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~---g~w--~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 48 PVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW---GVW--QVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred eeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh---ceE--EEEEeccCChhHHHHHhhhccc
Confidence 466666655442 22233455556556899999999999988876643 322 4446789999999999875543
No 75
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=97.90 E-value=7.5e-05 Score=45.99 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=52.7
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
-+..++|+|.+||-|++-.++.++++.+. ++|...+.+-+-+. ...+|+.+||.++....
T Consensus 58 vikcvAvs~s~qGeGl~lkl~TeLin~ay-~~g~~hLFiyTKp~---~~~lFk~~GF~~i~~~~ 117 (352)
T COG3053 58 VIKCVAVSESLQGEGLALKLVTELINLAY-ERGRTHLFIYTKPE---YAALFKQCGFSEIASAE 117 (352)
T ss_pred eeEEEEechhcccccHHHHHHHHHHHHHH-HcCCceEEEEechh---HHHHHHhCCceEeeccC
Confidence 47788999999999999999999999998 89999998888554 56799999999988654
No 76
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.58 E-value=0.00025 Score=34.79 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=27.4
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
-.+.|..+-|+|.+|++||+++|++.+.+...
T Consensus 4 a~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~i 35 (70)
T PF13880_consen 4 AVCGISRIWVSPSHRRKGIATRLLDAARENFI 35 (70)
T ss_pred EEEEeEEEEeChhhhhhhHHHHHHHHHHHhcc
Confidence 35678888889999999999999999988743
No 77
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.49 E-value=0.00016 Score=47.00 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=41.4
Q ss_pred ChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 26 ~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
...+|.+|+|++|++.+++.++ +.+..++...- -..++..|+|+||+..+
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~-ee~~~ki~viS---giG~ReYy~k~GY~~~g 508 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAR-EEGAKKILVIS---GIGVREYYRKLGYELDG 508 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHH-hhccccEEEEe---cccHHHHHHHhCccccC
Confidence 4679999999999999999998 44577764433 46789999999999887
No 78
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=97.43 E-value=0.0013 Score=39.72 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=50.4
Q ss_pred cceeeeeeeeeChhhhcc--------C--------------------hHHHHHHHHHHHHhhccCccEEEEEecCCcHHH
Q 034515 15 LELAEVEIMIAEPKSRGK--------G--------------------LAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS 66 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~--------G--------------------~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~ 66 (92)
+..+|++.++|+|++|++ | +...|+..+.+++. ..|++.+.+.+ .+..
T Consensus 109 ~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~---~~~l 184 (241)
T TIGR03694 109 SRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSS-ANGITHWYAIM---EPRL 184 (241)
T ss_pred CceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHH-HCCCcEEEEEe---CHHH
Confidence 468999999999999974 2 45678999999998 88999998777 4468
Q ss_pred HHHHHhcCCeeec
Q 034515 67 LRLFQKLGFEDIS 79 (92)
Q Consensus 67 ~~~~~~~Gf~~~~ 79 (92)
.+++.++|+....
T Consensus 185 ~r~l~r~G~~~~~ 197 (241)
T TIGR03694 185 ARLLSRFGIQFRQ 197 (241)
T ss_pred HHHHHHhCCceEE
Confidence 8899999987654
No 79
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.31 E-value=0.00051 Score=45.09 Aligned_cols=74 Identities=11% Similarity=0.190 Sum_probs=57.2
Q ss_pred eEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecC--CcHHHHHHHHhcCCeeec
Q 034515 4 DVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE--SNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 4 ~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~--~n~~~~~~~~~~Gf~~~~ 79 (92)
.+++....... ..++|+.+...-..-|+++-++++..+++.+. ..|+..+.....+ .|.....||+++||+..+
T Consensus 474 iigvviv~kk~-~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~-~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 474 IIGVVIVEKKE-SEWFIDTFLMSCRVLGRKVEQRLMNSLEEQAL-SEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred eEEEEEEEecC-CeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 34444333333 66778888765555599999999999999998 7899999887765 589999999999999555
No 80
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.28 E-value=0.00076 Score=42.81 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=41.9
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+||.||+|+-|+++++..++++.|-.++...- -...++.|.|+||+..+
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavIS---GVGtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVIS---GVGTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEe---ccchHHHHHhhCeeecC
Confidence 369999999999999999999888777765444 34578899999999988
No 81
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.23 E-value=0.0036 Score=36.31 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=48.3
Q ss_pred cceeeeeeeeeChhhhcc------ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 15 LELAEVEIMIAEPKSRGK------GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~------G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+..+|+..++++|+.++. -+...|+..+.+++. ..|++.+.+.+ +.+..++++++||.....
T Consensus 88 ~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~-~~gi~~~v~V~---~~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 88 PDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFAL-SNGIRHIVGVV---DPAMERILRRAGWPVRRL 155 (182)
T ss_dssp TTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHH-CTT-SEEEEEE---EHHHHHHHHHCT-EEEES
T ss_pred CcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHH-HCCCCEEEEEE---ChHHHHHHHHcCCceEEC
Confidence 467999999999874321 356789999999998 89999997766 678999999999988764
No 82
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=97.17 E-value=0.0053 Score=36.31 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=49.0
Q ss_pred cceeeeeeeeeChhhhcc---C----hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 15 LELAEVEIMIAEPKSRGK---G----LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~---G----~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
++.+|++.+.|+|+++.. + +...|+..+.+++. ..|++.+...+ +....+++.++||....
T Consensus 97 ~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~-~~Gi~~~~~v~---~~~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 97 PAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSM-ANGYTEIVTAT---DLRFERILARAGWPMQR 164 (207)
T ss_pred CCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHH-HCCCCEEEEEE---CHHHHHHHHHcCCCeEE
Confidence 578999999999986422 2 45678999999997 88999997777 44688899999987754
No 83
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.11 E-value=0.0032 Score=36.48 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=40.8
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHH-hcCCeeech
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFEDISY 80 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~-~~Gf~~~~~ 80 (92)
.+...++.+-++|+|||+|+++.+.+.+.+.+. . .-....+ ..|..+.++|. -+||...+.
T Consensus 76 ~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~-~-~~~N~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 76 KPLQFIGFFWIDPEYRGKGIMKLQDDICMDELD-S-VDDNSVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred CCeEEEeeeeeCCcccCcchHHHHHHHHHHHhc-c-CCCceee---ecCHHHHHHHHHHhCCCCCcc
Confidence 456789999999999999999655555545544 3 2233333 24566666766 568887776
No 84
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.01 E-value=0.0054 Score=33.12 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=40.4
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+-.+.|++..|++|+|++|.+.++..-. ++--.+.++...+...+|.+| -|....
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML~~e~----~~p~~~a~DrPS~Kll~Fl~K-hy~L~~ 103 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHMLQEEN----VSPHQLAIDRPSPKLLSFLKK-HYGLQR 103 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHHHHcC----CCcccceecCCcHHHHHHHHH-hcCCCc
Confidence 45566678999999999999999887632 233355577778888888887 344433
No 85
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.96 E-value=0.0082 Score=31.50 Aligned_cols=45 Identities=7% Similarity=0.032 Sum_probs=37.0
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHH
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 65 (92)
+...+++-++|.|..|++|++..++..+.+. .+.+.....++|+.
T Consensus 32 ~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d------~~~L~Wrsr~~n~~ 76 (99)
T cd04264 32 NGVPYLDKFAVSSSAQGEGTSDALWRRLRRD------FPKLFWRSRKTNPI 76 (99)
T ss_pred CCceEEEEEEEchhhhhcChHHHHHHHHHhh------CCceEEEeCCCCcc
Confidence 3678999999999999999999999987655 25677788888764
No 86
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.92 E-value=0.00034 Score=45.54 Aligned_cols=62 Identities=19% Similarity=0.347 Sum_probs=46.1
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEE-----ecCCcHHHHHHHHhcCCeeec
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAK-----IGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~-----~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+.|..++|+|+||+-|+|...+..+.+|+. ++.++.+.-. +...-..=..|+++.||+..-
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~-eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWII-ERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHH-HhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 4678999999999999999999999999998 6666655333 111111224689999998765
No 87
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=96.88 E-value=0.016 Score=31.85 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=52.8
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhhH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (92)
...++.-+. +|++|| ++.+.-..+.+|+.+...+..+...+...-+.-+-..+-+|.+.++..+.+
T Consensus 61 ~~vecHa~y-~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp~kt~~Grvic~llg~~RVG~id~~ 126 (151)
T PF11039_consen 61 SVVECHAMY-DPGFRG--YALEIGRLFCKWLLENSPFQNVITFVPDKTRYGRVICRLLGARRVGHIDDY 126 (151)
T ss_pred eeEEEEeee-ccccch--hHHHHHHHHHHHHhcCCceeEEEEecccccccchhHhhhhCCceeeeHHHH
Confidence 456666666 699998 899998899999997788888877776666777777778899999976654
No 88
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.75 E-value=0.011 Score=30.98 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=36.4
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 65 (92)
...+++-++|.|..|++|++..++..+.+.. +.+.....++|+.
T Consensus 33 ~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~------~~L~Wrsr~~n~~ 76 (99)
T cd04265 33 GVPYLDKFAVSSSAQGEGTGEALWRRLRRDF------PKLFWRSRSTNPI 76 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhhC------CceEEEeCCCCcc
Confidence 6789999999999999999999999876552 3467788888764
No 89
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.13 E-value=0.052 Score=29.30 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=36.5
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEe
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI 59 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~ 59 (92)
+..+......+|++++.+.|..++..+++++. +.|++.+-...
T Consensus 93 ~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~-~~g~~~~d~g~ 135 (142)
T PF13480_consen 93 GTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAI-ERGLRYFDFGG 135 (142)
T ss_pred CEEEEEEEEECHhhHhCCHHHHHHHHHHHHHH-HCCCCEEEECC
Confidence 56677777889999999999999999999998 78988776544
No 90
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.033 Score=33.49 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=50.3
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHH-HhcCCeeec
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF-QKLGFEDIS 79 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~-~~~Gf~~~~ 79 (92)
..+-+...|.|++++.|+|-.|-..-.+++. +.|++.+..+.+|-|..-.+|- .|+|-...-
T Consensus 74 y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~-~~G~tli~WTfDPl~alNA~fNi~KLGa~art 136 (266)
T COG3375 74 YLYSHMLGVREEVKGSGLGVALKMKQRERAL-SMGYTLIAWTFDPLNALNARFNISKLGAIART 136 (266)
T ss_pred eeeeeehhccccccccchhhhhHHHHHHHHH-hcCeeeEEEecccchhhhhhcchhhhceeEEE
Confidence 4556677889999999999999999999998 8999999999999987665553 366655443
No 91
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=95.69 E-value=0.074 Score=31.10 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.0
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
.--+..+.+-|-||++|+|+.|++..=...+
T Consensus 80 ~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr 110 (188)
T PF01853_consen 80 NNNLSCILTLPPYQRKGYGRFLIDFSYELSR 110 (188)
T ss_dssp -EEESEEEE-GGGTTSSHHHHHHHHHHHHHH
T ss_pred CeeEeehhhcchhhhcchhhhhhhhHHHHhh
Confidence 3467778888999999999999988666655
No 92
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.65 E-value=0.013 Score=40.56 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=27.3
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
+.|-.++|+|+|+++|||++.++.+.++..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 568889999999999999999999999864
No 93
>PHA01733 hypothetical protein
Probab=95.48 E-value=0.025 Score=31.86 Aligned_cols=49 Identities=14% Similarity=0.197 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
+-..++..+..++.+...++.++-.+.+.|..+++|.+.+||+.....+
T Consensus 86 ~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~~ 134 (153)
T PHA01733 86 NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRYVQ 134 (153)
T ss_pred CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecccc
Confidence 4455555555555545578888999999999999999999999987543
No 94
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=95.33 E-value=0.048 Score=31.48 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=44.1
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcC
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~G 74 (92)
-.++++.+.|.|+..|.||+..+ ..+...+. +.+++.-..++ ..+..+.+++++
T Consensus 84 LVaElGLygVRpDLEGlGi~hs~-r~m~PvLq-~LgVPF~FGtV---R~al~~Hv~R~~ 137 (196)
T PF02474_consen 84 LVAELGLYGVRPDLEGLGISHSM-RVMYPVLQ-ELGVPFGFGTV---RHALRNHVERLC 137 (196)
T ss_pred eEEEEEEEEeeccccccccchhh-hhhhhHHH-hcCCCeecccc---hHHHHHHHHHHh
Confidence 36899999999999999999866 56667776 89999887777 566777887776
No 95
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.1 Score=31.46 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=45.2
Q ss_pred ceeEEEEeccCCc----cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHh
Q 034515 2 VGDVNIYMNDLDN----LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 72 (92)
Q Consensus 2 vG~~~~~~~~~~~----~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~ 72 (92)
||+-.++..+... .....|-.|.|++..|+.|.|.++++.+++.- +.+--.|.++.-....++|.+|
T Consensus 89 VG~KkLfl~D~~~~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~kE----~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 89 VGYKKLFLTDNEQNQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKKE----NVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred ccceeEEEeccHhhhhccCCceEEEEEeehhhhhcCchHHHHHHHHHhc----CCCchheeccChHHHHHHHHHH
Confidence 4555555555322 23456677777899999999999999887652 3333356676666777888876
No 96
>PHA02769 hypothetical protein; Provisional
Probab=95.24 E-value=0.031 Score=30.09 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=28.7
Q ss_pred HHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 44 AYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 44 ~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
+.++ ..|++.++.--.|+. |..+|.|.||+.++...
T Consensus 106 ~k~~-~dg~evlwtlgfpdh--snaly~kagfk~vg~ts 141 (154)
T PHA02769 106 EKLK-KDGFEVLWTLGFPDH--SNALYKKAGFKLVGQTS 141 (154)
T ss_pred HHHh-cCCeEEEEEecCCCc--chhHHhhhhhhHhcccc
Confidence 3444 679998888888876 78899999999998643
No 97
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.04 E-value=0.3 Score=29.04 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=48.0
Q ss_pred cceeeeeeeeeCh--hhh---ccCh-HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 15 LELAEVEIMIAEP--KSR---GKGL-AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 15 ~~~~~i~~~~v~~--~~r---~~G~-g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++..|...|++++ .-+ +... +.+++..+++++. ..|++.|...+ ...+.+.++++||.....
T Consensus 96 p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~-~~G~~~IvtVt---~~~meril~r~Gw~~~ri 163 (209)
T COG3916 96 PGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYAL-ARGITGIVTVT---DTGMERILRRAGWPLTRI 163 (209)
T ss_pred CCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHH-HcCCceEEEEE---chHHHHHHHHcCCCeEEc
Confidence 4678999998864 222 2233 6688999999998 88999996666 677999999999987653
No 98
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=94.93 E-value=0.025 Score=36.48 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=29.0
Q ss_pred eeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHH
Q 034515 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAY 45 (92)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~ 45 (92)
|+++++..+......--+..+.|.|-||++|||+.|++.-=..
T Consensus 246 G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeL 288 (396)
T KOG2747|consen 246 GCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYEL 288 (396)
T ss_pred ceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhh
Confidence 5555555443332334577788889999999999998864333
No 99
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=94.70 E-value=0.088 Score=32.17 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhhH
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (92)
-...++..+.+.+. +.|+.+|.+.+..+ ...+|++.||...+..+.|
T Consensus 22 ~~~~~~~~~~~~a~-~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~ 68 (266)
T TIGR03827 22 DVEALIPDLDALAK-KEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGY 68 (266)
T ss_pred cHHHHHHHHHHHHH-HcCCcEEEEEccHH---HHHHHHHCCCeEEEecccc
Confidence 37788999999987 88999999988666 4789999999999987765
No 100
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=94.60 E-value=0.34 Score=27.70 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=39.2
Q ss_pred CceeEEEEecc----CCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccE
Q 034515 1 MVGDVNIYMND----LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHV 54 (92)
Q Consensus 1 ~vG~~~~~~~~----~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~ 54 (92)
+||+++..... ......++|..+-|+++.|.++++-.|+.++-+.+. ..|+-.
T Consensus 90 LvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn-~~gI~q 146 (162)
T PF01233_consen 90 LVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVN-LQGIWQ 146 (162)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHH-TTT--E
T ss_pred EEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhh-hcCcee
Confidence 46777776554 222356899999999999999999999999999987 556544
No 101
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=94.18 E-value=0.25 Score=27.15 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=41.3
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
.-+..+. ||++..+++|+..+-..+++++ +.|++.+.+-..-.+ +.++--|..|++.
T Consensus 64 SaVY~fy-DPd~~~~SlG~~~iL~eI~~a~-~~~l~y~YLGY~I~~--c~kM~YK~~f~P~ 120 (128)
T PF04377_consen 64 SAVYTFY-DPDYSKRSLGTYSILREIELAR-ELGLPYYYLGYWIHG--CPKMNYKARFRPH 120 (128)
T ss_pred hheeeee-CCCccccCcHHHHHHHHHHHHH-HcCCCEEeeCeEeCC--CCcccchhcCCce
Confidence 3444555 7999999999999999999998 899999988665554 2233344445444
No 102
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=94.04 E-value=0.16 Score=31.61 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=24.8
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
--+..+.+.|-||++|+|+.|++..=...+
T Consensus 156 nNLaCIltLPpyQrkGyG~~LI~fSYeLSr 185 (290)
T PLN03238 156 YNLACILTLPPYQRKGYGKFLISFAYELSK 185 (290)
T ss_pred CcEEEEEecChhhhccHhHhHHHHHhHHhh
Confidence 347778888999999999999987766655
No 103
>PLN03239 histone acetyltransferase; Provisional
Probab=93.99 E-value=0.084 Score=33.68 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=24.7
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
--+..+.|.|-||++|+|+.|++..=...+
T Consensus 214 ~NLaCIltLPpyQrkGyG~lLI~fSYeLSr 243 (351)
T PLN03239 214 YNLACILTFPAHQRKGYGRFLIAFSYELSK 243 (351)
T ss_pred CceEEEEecChhhhcchhhhhHhhhhHhhh
Confidence 357788889999999999999987665554
No 104
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=93.55 E-value=0.18 Score=32.50 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=28.6
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccC
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFG 51 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~ 51 (92)
-..-+..+.+.|.||++|+|+.+++.+......+..
T Consensus 216 ~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~ 251 (403)
T KOG2696|consen 216 IRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPT 251 (403)
T ss_pred hhhhhheeEEeccccCCchHHHHHHHHHHhhccCCc
Confidence 346778888889999999999999999965543444
No 105
>PHA00432 internal virion protein A
Probab=93.15 E-value=0.22 Score=27.69 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=27.4
Q ss_pred CccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 51 GIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.++.++-.+.+.|..+++|.+.+||+....
T Consensus 92 ~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 92 QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 578889999999999999999999998874
No 106
>PTZ00064 histone acetyltransferase; Provisional
Probab=93.13 E-value=0.12 Score=34.50 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=24.4
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
--+..+.+.|-||++|||+.|++..=...+
T Consensus 385 nNLACILtLPpyQRKGYGklLIdfSYeLSr 414 (552)
T PTZ00064 385 YNLACILTLPCYQRKGYGKLLVDLSYKLSL 414 (552)
T ss_pred CceEEEEecchhhhcchhhhhhhhhhhhhh
Confidence 357788889999999999999987655544
No 107
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=93.04 E-value=0.55 Score=28.63 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=43.3
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
...-+..+. ||++..+++|+..+-..+++++ +.|.+.+++-..-.+ +.++--|.-|++..
T Consensus 167 ~lSAVY~Fy-DPd~~~~SLG~~~iL~qI~~ak-~~gl~y~YLGY~I~~--c~kM~YK~~f~P~E 226 (240)
T PRK01305 167 GLSAVYTFY-DPDEEHRSLGTFAILWQIELAK-RLGLPYVYLGYWIKG--SRKMNYKARFRPLE 226 (240)
T ss_pred ceeeEEEee-CCCccccCCHHHHHHHHHHHHH-HcCCCeEeeeEEECC--CCcccccccCCcce
Confidence 334455555 7999999999999999999998 889999988776554 22333444555544
No 108
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=92.96 E-value=0.75 Score=28.99 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=47.5
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+...++++++.+-...|...+++++. +.|++.+-......|....+|=++.|++++..
T Consensus 224 ~~g~~~~~~~~~~~~lL~w~~i~~a~-~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l 281 (330)
T TIGR03019 224 YAGGLREARDVAANDLMYWELMRRAC-ERGLRVFDFGRSKRGTGPFKFKKNWGFEPQPL 281 (330)
T ss_pred eccChHHHHhhChHHHHHHHHHHHHH-HCCCcEEEcCCCCCCCccHHHHhcCCCeeccc
Confidence 45567899999999999999999998 78999888766555667777888889998764
No 109
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=92.91 E-value=0.1 Score=34.46 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.2
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
--+..+.+.|-||++|||+.|++..=...+
T Consensus 307 ~NLaCIltlP~yQrkGyG~~LI~~SYeLSr 336 (450)
T PLN00104 307 YNLACILTLPPYQRKGYGKFLIAFSYELSK 336 (450)
T ss_pred CceEEEEecchhhhcchhheehhheehhhh
Confidence 357888889999999999999987555544
No 110
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=92.75 E-value=0.57 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=25.0
Q ss_pred ccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 52 IHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+.++-.+..+|...++|.+.+|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 6678889999999999999999998754
No 111
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=92.44 E-value=1.2 Score=25.75 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=36.6
Q ss_pred ccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHH
Q 034515 14 NLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF 70 (92)
Q Consensus 14 ~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~ 70 (92)
.+..++++-+++.|..||.|++..+...+.+.. +.+...+.++|+.- .+|
T Consensus 85 ~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~------p~L~Wrsr~~n~~~-~Wy 134 (170)
T PF04768_consen 85 NGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDF------PKLFWRSREDNPNN-KWY 134 (170)
T ss_dssp CTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-------SSEEEEEETT-TTH-HHH
T ss_pred CCCCeEEEEEEecchhhhcCHHHHHHHHHHHhc------cceEEEecCCCCcc-cEE
Confidence 346899999999999999999999998885443 23677788887644 444
No 112
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.28 Score=33.64 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=47.4
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
+...-|+.+.+++.++.-++ ..|..-..+++..++.+-++||.++|+..++...
T Consensus 827 ~a~D~~~~k~m~~vll~tL~-aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e 880 (891)
T KOG3698|consen 827 DASDAHPMKKMIQVLLVTLA-ANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSE 880 (891)
T ss_pred ccccchHHHHHHHHHHHHHH-hcCCcceeEEechhHHHHHHHHHHhchHHHhHhh
Confidence 34466899999999999987 7799999999999999999999999999887543
No 113
>PRK00756 acyltransferase NodA; Provisional
Probab=91.87 E-value=0.54 Score=27.15 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=40.0
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
-.++++.+.|.|+..|.||+..+ ..+...+. +.+++.-..++ ..+..+-.+++
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq-~LgVPF~FGtV---R~al~~Hv~R~ 136 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQ-ELGVPFAFGTV---RHALRNHVERL 136 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHH-hcCCCeecccc---hHHHHHHHHHH
Confidence 46899999999999999998766 56666775 88988877766 34455555554
No 114
>PRK14852 hypothetical protein; Provisional
Probab=90.61 E-value=0.79 Score=33.38 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=52.7
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHH-hcCCeeechhhhHHHh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ-KLGFEDISYSEIFKEV 87 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~-~~Gf~~~~~~~~~~~~ 87 (92)
..+++..++++|+.|..-+--.+++.+..++. ..++..+.++|.| .=..||+ -+||+.++....|..+
T Consensus 120 ~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~-~~~~dd~~i~VnP---kH~~FY~r~l~f~~ig~~r~~p~V 188 (989)
T PRK14852 120 NVVEVGALATQYSRRWTNLMVFLAKAMFQYSM-MSEVDDILVTVNP---KHVKFYTDIFLFKPFGEVRHYDTV 188 (989)
T ss_pred eEEeeehheechhhcccchhHHHHHHHHHHHH-HcCCCeEEEEECc---chHHHHHHHhCCccccccccCCCC
Confidence 57899999998888876666677777777776 5699999888854 4567999 5799999876665544
No 115
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=90.51 E-value=1.7 Score=23.30 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=35.5
Q ss_pred cceeeeeeeeeChhhhc-cChHHHHHHHHHHHHhhccCccE-EEEEecCCcHHH
Q 034515 15 LELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYAVENFGIHV-FRAKIGESNGAS 66 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~-~G~g~~l~~~~~~~~~~~~~~~~-i~~~~~~~n~~~ 66 (92)
...++++-+++.+..|| .|++..+...+.+. .+. +.....++|+.-
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~------fp~~L~Wrsr~~n~~n 84 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLDG------FPNELIWRSRKDNPVN 84 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHHc------CCCceEEEeCCCCccc
Confidence 36789999999999997 89999888887653 333 677788777643
No 116
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=90.07 E-value=0.27 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.9
Q ss_pred ceeeeeeeeeChhhhccChHHHHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAV 39 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~ 39 (92)
+.+|++.++|+|+||++.....|+
T Consensus 77 ~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 77 RVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred cEEEeehheECHhHCCChHHHHHh
Confidence 679999999999999987665543
No 117
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=89.77 E-value=1.8 Score=25.32 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=46.2
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
...|++.++.. +.|.+..++..+...+. ..|++.+ +.+.....++++.|+|..+..
T Consensus 86 ~IvEvGnLAs~----~~g~~~~l~~~l~~~L~-~~g~~w~---vfTaT~~lr~~~~rlgl~~~~ 141 (179)
T PF12261_consen 86 QIVEVGNLASF----SPGAARLLFAALAQLLA-QQGFEWV---VFTATRQLRNLFRRLGLPPTV 141 (179)
T ss_pred heeEeechhhc----CcccHHHHHHHHHHHHH-HCCCCEE---EEeCCHHHHHHHHHcCCCcee
Confidence 56889988863 47888899999988887 8899988 445578899999999998875
No 118
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.78 E-value=1.9 Score=26.53 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=44.0
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
...-+..+. ||++...++|+..+-.-+.+++ +.|.+.+++-..-.+ +.++--|.-|++..
T Consensus 174 GlSsVY~Fy-dPd~s~~SLGt~~iL~~I~~aq-~~~l~yvYLGYwI~~--c~KM~YKa~f~P~e 233 (253)
T COG2935 174 GLSSVYTFY-DPDMSKRSLGTLSILDQIAIAQ-RLGLPYVYLGYWIKG--CPKMNYKARFSPLE 233 (253)
T ss_pred cceeEEEEe-CCChhhhcchHHHHHHHHHHHH-HhCCCeEEEEEEECC--ccccCcccccChHH
Confidence 334455555 8999999999999999999997 899999999877665 33344444554444
No 119
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=88.00 E-value=0.18 Score=32.23 Aligned_cols=36 Identities=8% Similarity=0.186 Sum_probs=24.3
Q ss_pred EEEeccCCccceeeeeeeeeChhhhccChHHHHHHH
Q 034515 6 NIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLM 41 (92)
Q Consensus 6 ~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~ 41 (92)
+++..+......--+..+.+.|-||++|+|+.|++.
T Consensus 251 GyFSKEK~S~~~yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 251 GYFSKEKESEQDYNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred eeechhhcccccCceEEEEecChhHhcccceEeeee
Confidence 344333222233457777888999999999988764
No 120
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=84.89 E-value=7.8 Score=24.64 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=55.0
Q ss_pred CceeEEEEeccCCc---cceeeeeeeeeChhhhccChHHHHHHHHHHHHhh---c------cCccEEEEEecCCcHHHHH
Q 034515 1 MVGDVNIYMNDLDN---LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE---N------FGIHVFRAKIGESNGASLR 68 (92)
Q Consensus 1 ~vG~~~~~~~~~~~---~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~---~------~~~~~i~~~~~~~n~~~~~ 68 (92)
+|+.+++.+..... .-.+.|..+-+..=|..-|+-..|++.++-..++ + .+--.+.+++..-+....+
T Consensus 180 PIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~YSFD~~~~k 259 (304)
T PF11124_consen 180 PIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDVYSFDKDMKK 259 (304)
T ss_pred ceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEeeeccHHHHH
Confidence 35566666544322 1236677777777788899999999988644331 2 1122456777888999999
Q ss_pred HHHhcCCeeec
Q 034515 69 LFQKLGFEDIS 79 (92)
Q Consensus 69 ~~~~~Gf~~~~ 79 (92)
..++.||+.+.
T Consensus 260 ~L~~~gF~~i~ 270 (304)
T PF11124_consen 260 TLKKKGFKKIS 270 (304)
T ss_pred HHHHCCCeeee
Confidence 99999999998
No 121
>PHA00771 head assembly protein
Probab=84.56 E-value=5.1 Score=22.21 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=48.5
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhhH
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (92)
..++.-+. +|++||. ++ +.-..+.+|+.+...+..+..-+...-+.-+-..+-+|.+.++..+.+
T Consensus 62 ~~ecHa~y-~P~fRG~-ya-~~~r~F~kwlL~Nt~f~~vit~vp~kt~~G~vic~lig~rRVG~id~a 126 (151)
T PHA00771 62 TFDCHAMY-LPEIRGF-SK-EIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKY 126 (151)
T ss_pred EEEEEeee-Cccccch-hH-HHHHHHHHHHhcCCceeEEEEecccccccchhhhhhhCCceeeeHHHH
Confidence 34555555 6999987 33 777888888887778888877776666667777778899999976654
No 122
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=83.37 E-value=2.8 Score=27.02 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=36.4
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhh--ccCccEEEEEec--CCcHHHHHHHHhcCCeeec
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVE--NFGIHVFRAKIG--ESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~--~~~~~~i~~~~~--~~n~~~~~~~~~~Gf~~~~ 79 (92)
....+++.++++|+||+.|.|+.|...=.=++.+ ++=-+++.++.. .+-..--.|++.+|-+..+
T Consensus 119 tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWdalG~~FF~ 187 (342)
T PF04958_consen 119 TGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWDALGRHFFD 187 (342)
T ss_dssp TTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHHHTGGGTS-
T ss_pred CCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHHHhhccccC
Confidence 3678999999999999999998776654333321 222244555443 2333456777777755544
No 123
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=81.86 E-value=1.4 Score=23.12 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=16.4
Q ss_pred CcHHHHHHHHhcCCeeechh
Q 034515 62 SNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 62 ~n~~~~~~~~~~Gf~~~~~~ 81 (92)
+=.+|.+||+.+||+.....
T Consensus 11 Dl~~s~~FY~~LGf~~~~~~ 30 (113)
T cd08356 11 DFAESKQFYQALGFELEWEN 30 (113)
T ss_pred cHHHHHHHHHHhCCeeEecC
Confidence 34788999999999988754
No 124
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=81.45 E-value=1.3 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCcHHHHHHHHhcCCeeec
Q 034515 61 ESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+=.+|++||+++||+...
T Consensus 9 ~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 9 ADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred ccHHHHHHHHHHhCceecC
Confidence 4557899999999998754
No 125
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=80.69 E-value=3.4 Score=26.59 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=22.6
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHH
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLM 41 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~ 41 (92)
....+++.++++|+||+.|.|+.|.+.
T Consensus 115 tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 115 TGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred CCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 366899999999999999988876654
No 126
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=80.63 E-value=4.7 Score=26.58 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=31.6
Q ss_pred eeEEEEeccCCccceeeeeeeeeChhhhc-cChHHHHHHHHHHHH
Q 034515 3 GDVNIYMNDLDNLELAEVEIMIAEPKSRG-KGLAKDAVLMMMAYA 46 (92)
Q Consensus 3 G~~~~~~~~~~~~~~~~i~~~~v~~~~r~-~G~g~~l~~~~~~~~ 46 (92)
|.+.+......+.+..+++-++|.++.|| -|++..++.-+.+..
T Consensus 386 g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~f 430 (495)
T COG5630 386 GAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEF 430 (495)
T ss_pred eeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhC
Confidence 34444444334447789999999999999 799988877665543
No 127
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=80.29 E-value=1.7 Score=22.96 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.5
Q ss_pred CCcHHHHHHHHhcCCeeec
Q 034515 61 ESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+=.+|..||+.+||+...
T Consensus 9 ~Dl~~s~~FY~~lGf~~~~ 27 (124)
T cd09012 9 KDLEKSTAFYTALGFEFNP 27 (124)
T ss_pred CCHHHHHHHHHHCCCEEcc
Confidence 3447899999999999764
No 128
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=80.07 E-value=6.8 Score=20.58 Aligned_cols=44 Identities=2% Similarity=0.046 Sum_probs=35.4
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 65 (92)
..++++-+++.+..++.|++..+...+.+. .+.+.....++|+.
T Consensus 32 ~v~~LdkFav~~~~~~~gv~D~vf~~i~~d------~~~L~Wrsr~~n~~ 75 (98)
T cd03173 32 SIPYLDKFAVSDHLWLNNVTDNIFNLIRKD------FPSLLWRVRENDAN 75 (98)
T ss_pred CCEEEEEEEEcccccccCHHHHHHHHHHhh------CCeeEEEeCCCCCc
Confidence 578999999999999999999888877544 24677788887764
No 129
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=79.83 E-value=3.7 Score=26.44 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.5
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHH
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLM 41 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~ 41 (92)
....+++.++++|+||+.|.|+.|.+.
T Consensus 115 tG~SElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 115 TGYSELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred CCCeeeEEEEECHHHcCCcchhhHHHH
Confidence 366899999999999999988776654
No 130
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=79.78 E-value=3.8 Score=26.38 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=22.5
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHH
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLM 41 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~ 41 (92)
....+++.++++|+||+-|.|+.|.+.
T Consensus 116 tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 116 TGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred CCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 366899999999999999988876654
No 131
>PRK10456 arginine succinyltransferase; Provisional
Probab=79.69 E-value=3.7 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=22.5
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHH
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLM 41 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~ 41 (92)
....+++.++++|+||+.|.|+.|.+.
T Consensus 117 tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 117 TGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred CCCceeEEEEECHHHcCCCchhHHHHH
Confidence 356899999999999999988876654
No 132
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=79.67 E-value=6 Score=23.80 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+|+|.+-.+.++-++. +.. +..-+..+++++.++|+....
T Consensus 121 KGIG~ETaDsILlYa~-~rp-------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYAL-DRP-------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHh-cCc-------ccchhHHHHHHHHHhcccccc
Confidence 5999999999999998 332 344578999999999999885
No 133
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=79.28 E-value=8.1 Score=23.03 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHhhc-cCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 33 GLAKDAVLMMMAYAVEN-FGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
|.|..++..+++..... ....++.+.........+++..++||.....
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe
Confidence 66777888888776532 2567899999999899999999999998874
No 134
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=78.67 E-value=8.2 Score=20.66 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
......+++.+. ..|++.+++.....+..+.+..++.|.+.++.
T Consensus 65 ~~~~~~~v~~~~-~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 65 PDKVPEIVDEAA-ALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp HHHHHHHHHHHH-HHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred HHHHHHHHHHHH-HcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 344556666665 67999999999999999999999999999863
No 135
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=77.08 E-value=1.8 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=15.5
Q ss_pred cHHHHHHHHhcCCeeech
Q 034515 63 NGASLRLFQKLGFEDISY 80 (92)
Q Consensus 63 n~~~~~~~~~~Gf~~~~~ 80 (92)
=.+|.+||..+||+....
T Consensus 14 L~~S~~Fy~alGfk~Npq 31 (133)
T COG3607 14 LEASKAFYTALGFKFNPQ 31 (133)
T ss_pred HHHHHHHHHHhCcccCCC
Confidence 368899999999998873
No 136
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=77.07 E-value=2.4 Score=22.23 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=17.0
Q ss_pred CCcHHHHHHHHhcCCeeechhh
Q 034515 61 ESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
.+=.+|++||+++||+......
T Consensus 11 ~Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 11 RDLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred CCHHHHHHHHHHcCCEEEecCC
Confidence 3447899999999999876543
No 137
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=74.30 E-value=4.9 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=19.3
Q ss_pred ccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 52 IHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+..+.+.+ .+=.+|.+||+++||+....
T Consensus 4 i~Hi~i~v-~Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVV-RDLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEe-CCHHHHHHHHHHcCCEEccc
Confidence 33443333 45688899999999987654
No 138
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=71.51 E-value=19 Score=22.35 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=44.6
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEec---CCcHHHHHHHHhcCCeeechhhhHHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDISYSEIFKE 86 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~---~~n~~~~~~~~~~Gf~~~~~~~~~~~ 86 (92)
..+.+-..+++|.|++...+.++-+.. . +.++++++...+ +............|....+..++-.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~----~-elg~k~i~~V~NKv~e~e~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELA----E-ELGIKRIFVVLNKVDEEEELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHH----H-HhCCceEEEEEeeccchhHHHHhhhhccCCeEEEEccCCHH
Confidence 346777889999999887776655443 2 556677766554 33445667777888888887665443
No 139
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=70.47 E-value=7.1 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=36.1
Q ss_pred CceeEEEEecc----CCccceeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 1 MVGDVNIYMND----LDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 1 ~vG~~~~~~~~----~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
+||+++..+.. ....+.++|..+.|+.+.|+++++-.|+.++-+.+.
T Consensus 147 LVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvn 197 (421)
T KOG2779|consen 147 LVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVN 197 (421)
T ss_pred eEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhh
Confidence 35666655432 222357899999999999999999999999988765
No 140
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=70.26 E-value=9 Score=20.44 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=23.7
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHH---HHHHHhcCCeeech
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDISY 80 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~---~~~~~~~Gf~~~~~ 80 (92)
...++| -++-+-.+++.+.+..++..+.+.+..+.... .+-+.=+||+.+..
T Consensus 33 ~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 33 SALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp ---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred cccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 344444 45666677888875689999999988776553 44444567877763
No 141
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=68.64 E-value=5.2 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=17.7
Q ss_pred EEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 54 VFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 54 ~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.+.+.+. +=.+|.+||+.+||+....
T Consensus 6 hv~l~v~-Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 6 HVRFEHP-DLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEccC-CHHHHHHHHHHcCCEEEEe
Confidence 3444332 3467899999999987653
No 142
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=68.62 E-value=20 Score=20.47 Aligned_cols=46 Identities=24% Similarity=0.285 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEe-----------cCCcHHHHHHHHhcCCeeechh
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKI-----------GESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~-----------~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
+..+.+.+.+.+. +.|++.+...+ -+..+++++.+.+.|++.....
T Consensus 74 Aq~aa~~~a~k~~-~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~ 130 (149)
T PTZ00129 74 AMMAAQDVAARCK-ELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIE 130 (149)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 4456666777776 78999999998 5778999999999999987643
No 143
>PRK04531 acetylglutamate kinase; Provisional
Probab=67.58 E-value=24 Score=23.38 Aligned_cols=44 Identities=14% Similarity=0.094 Sum_probs=36.0
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGA 65 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~ 65 (92)
...+++-|++.+..|+.|++..+...+.+.. +.+.+...++|+.
T Consensus 309 ~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~------~~L~Wrsr~~n~~ 352 (398)
T PRK04531 309 GGPYLDKFAVLDDARGEGLGRAVWNVMREET------PQLFWRSRHNNTI 352 (398)
T ss_pred CceEeEEEEEccchhhcChHHHHHHHHHhhC------CceEEEcCCCCCc
Confidence 5689999999999999999999888876553 3577788888863
No 144
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=67.57 E-value=8.8 Score=20.99 Aligned_cols=19 Identities=11% Similarity=0.482 Sum_probs=15.2
Q ss_pred CCcHHHHHHHH-hcCCeeec
Q 034515 61 ESNGASLRLFQ-KLGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~-~~Gf~~~~ 79 (92)
.+-.+|++||+ .+||+...
T Consensus 11 ~DlerSi~FY~~vLG~~~~~ 30 (127)
T cd08358 11 GNRNKTIKFYREVLGMKVLR 30 (127)
T ss_pred CCHHHHHHHHHHhcCCEEEe
Confidence 45589999996 58999765
No 145
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=66.71 E-value=13 Score=20.01 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHh-cCCeeech
Q 034515 61 ESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
++=.+|.+||++ +||+....
T Consensus 9 ~D~e~s~~FY~~vLGf~~~~~ 29 (136)
T cd08342 9 GNAKQLASWFSTKLGFEPVAY 29 (136)
T ss_pred CCHHHHHHHHHHhcCCeEEEe
Confidence 455788999998 99988764
No 146
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=65.79 E-value=17 Score=21.29 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCc--HHHHHHHHhcCCeeech
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESN--GASLRLFQKLGFEDISY 80 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n--~~~~~~~~~~Gf~~~~~ 80 (92)
-.-.++++.+++.++ +.|...+...-.+.. ......++..||.....
T Consensus 19 ~T~P~vv~avv~~l~-~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLK-EAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred cCCHHHHHHHHHHHH-HcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 344588999999997 777774444333333 57899999999998864
No 147
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=64.89 E-value=4.9 Score=22.18 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=18.5
Q ss_pred eeeeChhhhccChHHHHHHHHHH
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMA 44 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~ 44 (92)
.+.+||+++|.-+.+.+.+.+-.
T Consensus 59 IILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 59 IILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEEeCCCcchHHHHHHHHHHhcc
Confidence 34669999999988888887755
No 148
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=64.39 E-value=19 Score=20.03 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=33.6
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
|-||-|+|+.+++.+.+.+- + . +.....-+|..+-....|.|-..-
T Consensus 6 DGQGGGiG~~iv~~lr~~~~-~-~---~eI~AlGTNa~AT~~MlKaGA~~g 51 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKELP-E-E---VEIIALGTNAIATSAMLKAGANEG 51 (131)
T ss_pred eCCCChhHHHHHHHHHHhCC-C-C---cEEEEEehhHHHHHHHHHcCCCCc
Confidence 57899999999999887765 2 2 344456668888777777776543
No 149
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=63.80 E-value=8.2 Score=19.46 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.6
Q ss_pred cHHHHHHHHh-cCCeeechh
Q 034515 63 NGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~~ 81 (92)
=.+|.+||++ +||+.....
T Consensus 6 ~~~a~~FY~~~lg~~~~~~~ 25 (108)
T PF12681_consen 6 LEAAAAFYEDVLGFEVVFDD 25 (108)
T ss_dssp HHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEeC
Confidence 3678999998 999998743
No 150
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.04 E-value=24 Score=21.52 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=25.0
Q ss_pred ccCccEEEEE---ecCCcHHHHHHHHhcCCeeech
Q 034515 49 NFGIHVFRAK---IGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 49 ~~~~~~i~~~---~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
..+++++..- +.+-|+....|+++.||+.++.
T Consensus 115 al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 115 ALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred hhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 5666666554 3577999999999999998873
No 151
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=62.90 E-value=4.6 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=22.0
Q ss_pred cCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 50 FGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 50 ~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
.|+..+...+.. -.++..+++++||+.+++.
T Consensus 8 ~G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~h 38 (139)
T PF14696_consen 8 DGFDFVEFAVPD-AQALAQLFTALGFQPVARH 38 (139)
T ss_dssp EEEEEEEEE-SS-TTSCHHHHCCCCEEEECCE
T ss_pred CCeEEEEEecCC-HHHHHHHHHHhCcceEEec
Confidence 466667765544 4666788899999999853
No 152
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=62.50 E-value=21 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=29.9
Q ss_pred HHHHHHHHhhccCccEEEEEec---CCcHHHHHHHHhcCCeeech
Q 034515 39 VLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~~~~---~~n~~~~~~~~~~Gf~~~~~ 80 (92)
...+.+-++ ..|++++.+.+- +-|....++|++.||+....
T Consensus 108 ~~A~~~AL~-alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~ 151 (239)
T TIGR02990 108 SSAAVDGLA-ALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNF 151 (239)
T ss_pred HHHHHHHHH-HcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeee
Confidence 444555555 778888866543 45788899999999998874
No 153
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=62.40 E-value=29 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=40.0
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
+++++++....... ...++..=-+|+.- +|+...|+..++.+++ +.|++++.+...+-
T Consensus 404 VvaFa~l~~~~~~~--~~SlDlMR~sp~ap-~g~mdfLf~~li~~aK-e~G~~~fsLgmApl 461 (538)
T COG2898 404 VVAFANLMPTGGKE--GYSLDLMRRSPDAP-NGTMDFLFSELILWAK-EEGYQRFSLGMAPL 461 (538)
T ss_pred eEEEEeecccCCcc--eeEEEeeecCCCCC-chHHHHHHHHHHHHHH-HcCCeEEecCCccc
Confidence 35666666655322 23344443345555 6899999999999998 88999998776654
No 154
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=61.40 E-value=6.8 Score=18.33 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=16.5
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.||-+.+++.+.+..+. -...+..++++|.+-..
T Consensus 6 ~Gi~~~lVd~F~~mGF~--------------~dkVvevlrrlgik~~n 39 (55)
T PF09288_consen 6 YGIDKDLVDQFENMGFE--------------RDKVVEVLRRLGIKSMN 39 (55)
T ss_dssp ---SHHHHHHHHHHT----------------HHHHHHHHHHS--SS--
T ss_pred cCCCHHHHHHHHHcCCc--------------HHHHHHHHHHhCCCCCC
Confidence 46677777766665552 14567777777776644
No 155
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=61.16 E-value=35 Score=21.28 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=26.1
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
-.+.|...=|.+..|++|+++.|++.+.....
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 45677777778999999999999999886543
No 156
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=60.67 E-value=8.4 Score=19.87 Aligned_cols=27 Identities=11% Similarity=0.269 Sum_probs=18.6
Q ss_pred cEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 53 HVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
..+.+.+ .+=.+|.+||+.+||+....
T Consensus 4 ~hv~l~v-~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 4 DHFALEV-PDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eEEEEec-CCHHHHHHHHHHhCCcEEee
Confidence 3443433 33478899999999998753
No 157
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=59.44 E-value=20 Score=18.39 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=20.0
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeechh
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (92)
+..+.+.+ ++=.++.+||++ +||+.....
T Consensus 4 l~hi~l~v-~d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 4 IDHVVLTV-ADIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred cceEEEEe-cCHHHHHHHHHHHhCceeeccc
Confidence 34454444 455788999988 899887643
No 158
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=58.25 E-value=11 Score=19.30 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=14.4
Q ss_pred CcHHHHHHHHh-cCCeeec
Q 034515 62 SNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~ 79 (92)
+=..|..||++ +||+...
T Consensus 10 Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 10 DPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred CHHHHHHHHHHhcCceEEE
Confidence 44678999997 9999763
No 159
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=57.68 E-value=35 Score=19.91 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHH---HHHHHhcCCeeechhh
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDISYSE 82 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~---~~~~~~~Gf~~~~~~~ 82 (92)
+|..+++.+.+.+. +.|+.-..=.|..-|.+. +...++.||+.+...+
T Consensus 44 va~ai~~~l~~~~~-~~gi~LA~QcCEHlNRALvvEr~~a~~~~le~V~VvP 94 (172)
T PF04260_consen 44 VAEAIFEALLEVLK-ERGIYLAFQCCEHLNRALVVEREVAEKYGLEEVTVVP 94 (172)
T ss_dssp HHHHHHHHHHHHHH-TTT-EEEEE--GGGTT-EEEEHHHHHHHT--EEE-B-
T ss_pred HHHHHHHHHHHHHH-HcCcEEEEEchhhhhHHHHhhHHHHhHcCCceEEEEc
Confidence 56778888888887 889988888888888765 6788889999887655
No 160
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=57.37 E-value=22 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=19.0
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCCeee
Q 034515 51 GIHVFRAKIGESNGASLRLFQK-LGFEDI 78 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~-~Gf~~~ 78 (92)
++.++.+.| .+=.+|+.||++ +||+..
T Consensus 4 ~i~Hv~i~V-~Dle~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISV-PDLDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEe-CCHHHHHHHHHHhcCCEEE
Confidence 455555544 455889999987 899775
No 161
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=56.32 E-value=26 Score=19.52 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=25.2
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCc
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESN 63 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n 63 (92)
-.|+|+||-..+.+.+-+.+..-..-+.+.+...+++
T Consensus 14 q~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 14 QGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred eecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 4699999999999888777663334444555555554
No 162
>PRK10150 beta-D-glucuronidase; Provisional
Probab=55.18 E-value=47 Score=23.15 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=40.1
Q ss_pred hccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
.|..+-.+.+..-++.++ +.|+..|.+...+.++....+..++|+-.....
T Consensus 306 ~G~a~~~~~~~~d~~l~K-~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~ 356 (604)
T PRK10150 306 RGKGLDEVLNVHDHNLMK-WIGANSFRTSHYPYSEEMLDLADRHGIVVIDET 356 (604)
T ss_pred cCCcCCHHHHHHHHHHHH-HCCCCEEEeccCCCCHHHHHHHHhcCcEEEEec
Confidence 344455566666677787 899999999888888899999999999877644
No 163
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=54.18 E-value=10 Score=19.02 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=17.6
Q ss_pred eeeeeChhhhccChHHHHHHHHH
Q 034515 21 EIMIAEPKSRGKGLAKDAVLMMM 43 (92)
Q Consensus 21 ~~~~v~~~~r~~G~g~~l~~~~~ 43 (92)
-.+.+||+..|+.+.+++.+.+.
T Consensus 48 VIiltD~D~aG~~i~~~~~~~l~ 70 (81)
T cd01027 48 VIILTDPDRKGEKIRKKLSEYLS 70 (81)
T ss_pred EEEEECCCHHHHHHHHHHHHHhc
Confidence 34567999999888888777763
No 164
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=53.94 E-value=28 Score=17.79 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=19.8
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCCeeechhh
Q 034515 53 HVFRAKIGESNGASLRLFQK-LGFEDISYSE 82 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~~~ 82 (92)
..+.+.+ .+=+++..||++ +||+......
T Consensus 3 ~Hi~i~v-~d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 3 DHIAIRV-KDLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEE-SCHHHHHHHHHHTTTSEEEEEEE
T ss_pred EEEEEEc-CCHHHHHHHHHHHhCCcEEeeec
Confidence 4444444 444688999996 8999887543
No 165
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=52.44 E-value=6.8 Score=18.94 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=10.6
Q ss_pred eChhhhccChHHHH
Q 034515 25 AEPKSRGKGLAKDA 38 (92)
Q Consensus 25 v~~~~r~~G~g~~l 38 (92)
-+|+||++.+++-|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 47999998887643
No 166
>COG2851 CitM H+/citrate symporter [Energy production and conversion]
Probab=52.16 E-value=31 Score=23.03 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=30.4
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
-+|+.++..+.+. +..|..+...++ .+...+|+|+|+++.-
T Consensus 99 ~igTavla~~v~L--DGdGatTflIti----~A~LPlYkrLgmn~~~ 139 (433)
T COG2851 99 VIGTAVLAAVVSL--DGDGATTFLITI----PALLPLYKRLGMNPYL 139 (433)
T ss_pred eHHHHHHHHHhhc--cCCCceEEEeeH----HhHhHHHHHcCCcHHH
Confidence 3577777666554 466777777766 7899999999998754
No 167
>PRK10291 glyoxalase I; Provisional
Probab=51.53 E-value=16 Score=19.32 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.9
Q ss_pred cHHHHHHHHh-cCCeeec
Q 034515 63 NGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~ 79 (92)
=..|..||++ +||+...
T Consensus 7 le~s~~FY~~~LG~~~~~ 24 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLR 24 (129)
T ss_pred HHHHHHHHHhccCCEEEE
Confidence 3779999976 9999765
No 168
>PRK13690 hypothetical protein; Provisional
Probab=50.75 E-value=51 Score=19.48 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHH---HHHHHhcCCeeechhh
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDISYSE 82 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~---~~~~~~~Gf~~~~~~~ 82 (92)
-+|..+++.+.+.+. +.|+.-..=.|..-|.+. +...++.||+.+...+
T Consensus 50 eva~~i~~~l~~~~~-~~gi~LA~QcCEHLNRALvvEr~~a~~~~le~V~VvP 101 (184)
T PRK13690 50 EVAEAIVEALLEVLK-ETGIHLAVQGCEHLNRALVVEREVAEKYGLEIVTVVP 101 (184)
T ss_pred HHHHHHHHHHHHHhh-hcCcEEEEechhhhHHHHHHhHHHHHHcCCeEEEEec
Confidence 467888888888886 889888888888888776 4588899999987644
No 169
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=50.08 E-value=17 Score=18.33 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=15.9
Q ss_pred CcHHHHHHHHh-cCCeeechh
Q 034515 62 SNGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~~ 81 (92)
+=.++.+||++ +||+.....
T Consensus 8 d~~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 8 DIERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred CHHHHHHHHHhccCeEEEEEc
Confidence 44678999999 999987643
No 170
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=49.94 E-value=51 Score=19.26 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHH---HHHHHhcCCeeechhh
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDISYSE 82 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~---~~~~~~~Gf~~~~~~~ 82 (92)
-+|..+++.+.+... +.|+.-..=.|..-|.+. +...++.||+.+...+
T Consensus 43 eva~~i~~~l~~~~~-~~gi~lA~Q~CEHlNRALvvEr~~a~~~~le~V~VvP 94 (172)
T TIGR01440 43 EVAETIVNALDVVLK-KTGVTLAFQGCEHINRALVMERSVAEPLGMEEVSVVP 94 (172)
T ss_pred HHHHHHHHHHHHHhh-hcCeEEEEechhhhhHHHHHhHHHHHHcCCceEEEec
Confidence 467888888888886 889888887888888775 4588899999987644
No 171
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=49.49 E-value=34 Score=17.52 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHh-cCCeeech
Q 034515 61 ESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
.+=.+|..||++ +||+....
T Consensus 10 ~d~~~a~~FY~~~lG~~~~~~ 30 (126)
T cd08346 10 RDAQETVDFYTDVLGLRLVKK 30 (126)
T ss_pred CChhHhHHHHHHccCCEEeee
Confidence 444778999975 79987754
No 172
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=49.42 E-value=60 Score=19.92 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHhhcc-CccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 33 GLAKDAVLMMMAYAVENF-GIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~-~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
|.|..++..+++...+.. +.+++.+.....-..-+.+..+++|+....
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeee
Confidence 567777777777766333 667888888777778899999999998764
No 173
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=49.25 E-value=6.7 Score=21.19 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=22.5
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHhhccCcc
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIH 53 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~ 53 (92)
+.+..+.+.--.+++|+|..+++.+.+..+ ..|.+
T Consensus 17 aFlKlYiitm~e~~r~Yg~q~Ld~lr~EFk-~~Gy~ 51 (122)
T PF02334_consen 17 AFLKLYIITMVEQERGYGLQLLDELRSEFK-PLGYR 51 (122)
T ss_dssp HHHHHHHHHHHHTT-EBCTCHHHHHHHHHT-TTT--
T ss_pred HHHHHHHHhhhhcccchHHHHHHHHHHHhh-hcCCC
Confidence 344444444567888999999998888876 66644
No 174
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=49.11 E-value=17 Score=18.42 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=16.3
Q ss_pred CCcHHHHHHHHh-cCCeeechh
Q 034515 61 ESNGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~~ 81 (92)
.+=.++.+||.+ +||+.....
T Consensus 7 ~d~~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 7 DDQDKALAFYTEKLGFEVREDV 28 (119)
T ss_pred CCHHHHHHHHHhccCeEEEEee
Confidence 344778999997 999988653
No 175
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=49.11 E-value=55 Score=19.39 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=42.5
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcH---HHHHHHHhcCCeeechh
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG---ASLRLFQKLGFEDISYS 81 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~---~~~~~~~~~Gf~~~~~~ 81 (92)
.++.-|+-.=-+.-++-+-++++++.++..+.++.+.....+. +-.+-+.=+||+++...
T Consensus 104 l~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~ 166 (191)
T KOG4387|consen 104 LFFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEPVRPD 166 (191)
T ss_pred EEEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeeecCCC
Confidence 3443354444456677788889999888899999998887653 44566667899988743
No 176
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=48.86 E-value=44 Score=18.15 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEec-----------CCcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIG-----------ESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~-----------~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++...+.+.+.+. +.|++.+...+. +..+.+++-..+.|++....
T Consensus 48 Aq~aa~~~~~~~~-~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I 103 (114)
T TIGR03628 48 AMQAAGRAAEKAK-ERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 103 (114)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEE
Confidence 4456677777777 789999988874 46688899999999998764
No 177
>PRK14968 putative methyltransferase; Provisional
Probab=48.43 E-value=49 Score=18.63 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.+++.+.+.++ ..|.-.+.......+.....+..+.||+....
T Consensus 129 ~~i~~~~~~Lk-~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 129 RFLDEVGRYLK-PGGRILLLQSSLTGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred HHHHHHHHhcC-CCeEEEEEEcccCCHHHHHHHHHHCCCeeeee
Confidence 45666666665 55543333333345677899999999987653
No 178
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=47.91 E-value=56 Score=20.35 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=36.8
Q ss_pred eeeeeeeChhhhcc--ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 19 EVEIMIAEPKSRGK--GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 19 ~i~~~~v~~~~r~~--G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.+.-+.-++++... -.-.+.+..-+..++ +.|+..+.+...+.++.-..+..++|+-....
T Consensus 16 ~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k-~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e 78 (298)
T PF02836_consen 16 FLRGVNRHQDYPGLGRAMPDEAMERDLELMK-EMGFNAIRTHHYPPSPRFYDLCDELGILVWQE 78 (298)
T ss_dssp -EEEEEE-S-BTTTBT---HHHHHHHHHHHH-HTT-SEEEETTS--SHHHHHHHHHHT-EEEEE
T ss_pred EEEEEeeCcCcccccccCCHHHHHHHHHHHH-hcCcceEEcccccCcHHHHHHHhhcCCEEEEe
Confidence 33333334444333 344566666667777 89999999988888899999999999977653
No 179
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=47.66 E-value=12 Score=21.46 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=23.6
Q ss_pred HHHHHHHHhhccCccEEEE-Eec---CCcHHHHHHHHhcCCeeechh
Q 034515 39 VLMMMAYAVENFGIHVFRA-KIG---ESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 39 ~~~~~~~~~~~~~~~~i~~-~~~---~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
+++.+++++ ..|++++-+ .+. .+-....++++..||+..+..
T Consensus 43 veEiieFak-~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~ 88 (157)
T PF08901_consen 43 VEEIIEFAK-RMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSVC 88 (157)
T ss_pred HHHHHHHHH-HcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEE
Confidence 455666776 777777632 111 222333566677788777643
No 180
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=47.64 E-value=30 Score=17.84 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=18.0
Q ss_pred EEEEecCCcHHHHHHHHh-cCCeeechh
Q 034515 55 FRAKIGESNGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 55 i~~~~~~~n~~~~~~~~~-~Gf~~~~~~ 81 (92)
+.+.+ ++=.++.+||++ +||+.....
T Consensus 4 v~l~v-~d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 4 IGIAV-PDLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred EEEEe-CCHHHHHHHHHHhhCCCCcccc
Confidence 44444 345778999987 999987643
No 181
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=47.59 E-value=38 Score=17.34 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=17.5
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+..+.+.+ ++=+.+.+||++ +||+....
T Consensus 4 i~hv~l~v-~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 4 LRGVGLGV-PDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeEEEEec-CCHHHHHHHHHhCcCcEEEEe
Confidence 34444433 344778888886 88887643
No 182
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.58 E-value=54 Score=20.67 Aligned_cols=43 Identities=14% Similarity=0.343 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCc-----------HHHHHHHHhcCCeee
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESN-----------GASLRLFQKLGFEDI 78 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n-----------~~~~~~~~~~Gf~~~ 78 (92)
+...-+.+++++++ +.|+..+ +.+.... ....+.|+++|-+=+
T Consensus 70 ~~~~dl~elv~Ya~-~KgVgi~-lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~Gv 123 (273)
T PF10566_consen 70 IPDFDLPELVDYAK-EKGVGIW-LWYHSETGGNVANLEKQLDEAFKLYAKWGVKGV 123 (273)
T ss_dssp -TT--HHHHHHHHH-HTT-EEE-EEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEE
T ss_pred CCccCHHHHHHHHH-HcCCCEE-EEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEE
Confidence 34566777778876 6676643 3333333 556666766665443
No 183
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=47.45 E-value=41 Score=17.92 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=19.0
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 51 GIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
++..+.+.+ ++-.+|.+||++ +||+...
T Consensus 4 ~i~hv~l~V-~dl~~s~~FY~~~lG~~~~~ 32 (131)
T cd08364 4 GLSHITLIV-KDLNKTTAFLQNIFNAREVY 32 (131)
T ss_pred cEeEEEEEe-CCHHHHHHHHHHHhCCeeEE
Confidence 445555544 566788999976 8997654
No 184
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=47.41 E-value=20 Score=18.67 Aligned_cols=27 Identities=7% Similarity=0.358 Sum_probs=17.9
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
..+.+.+ ++=.+|.+||.+ +||+....
T Consensus 6 ~hv~l~v-~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 6 GHVQLRV-LDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEEEEEe-CCHHHHHHHHHhccCCEeeee
Confidence 3343433 334788999975 99988664
No 185
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=47.15 E-value=40 Score=17.18 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=18.3
Q ss_pred CccEEEEEecCCcHHHHHHHH-hcCCeeec
Q 034515 51 GIHVFRAKIGESNGASLRLFQ-KLGFEDIS 79 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~-~~Gf~~~~ 79 (92)
++..+.+.+ .+=.++.+||. .+||+...
T Consensus 3 ~~~hi~l~v-~d~~~a~~fy~~~lG~~~~~ 31 (125)
T cd08352 3 GIHHVAIIC-SDYEKSKEFYVEILGFKVIR 31 (125)
T ss_pred ccceEEEEc-CCHHHHHHHHHHhcCCEEee
Confidence 445555545 44577788887 48988764
No 186
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=46.98 E-value=17 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred ceeeeeeeeeChhhhccChHHHHH
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAV 39 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~ 39 (92)
...++..++++|++|.-+.|+.+.
T Consensus 118 G~SEl~sLFl~pd~Rkg~nG~Lls 141 (336)
T COG3138 118 GNSELCTLFLDPDWRKGGNGRLLS 141 (336)
T ss_pred CchhhhheeecHHHhcccchhhhh
Confidence 567899999999999777766543
No 187
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=46.65 E-value=35 Score=21.23 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=32.3
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEec
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~ 60 (92)
+++..-+-|.|--+|+++..++...+++..+.|-+.+.....
T Consensus 145 Ylgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaI 186 (259)
T COG0623 145 YLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAI 186 (259)
T ss_pred eccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeee
Confidence 344434459999999999999999999887777776655443
No 188
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=46.13 E-value=70 Score=19.75 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=28.9
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHH
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF 70 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~ 70 (92)
.-|.|+-.....+.......|.+.+.+.+++.|....+++
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~ 50 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYK 50 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHH
Confidence 3478887777766655547788888888999987555543
No 189
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=45.64 E-value=19 Score=18.76 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=17.1
Q ss_pred EEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 54 VFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 54 ~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
.+.+.+ ++=.+|.+||+. +||+....
T Consensus 5 ~v~l~v-~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 5 YLGVES-SDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred EEEEEe-CCHHHHHHHHHhccCceeccC
Confidence 344434 334678999976 89987543
No 190
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=45.53 E-value=24 Score=17.20 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=17.0
Q ss_pred CCcHHHHHHHHh-cCCeeechh
Q 034515 61 ESNGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~~ 81 (92)
.+-..+.+||.+ +||+.....
T Consensus 7 ~d~~~~~~fy~~~lg~~~~~~~ 28 (112)
T cd06587 7 SDLEAAVAFYEEVLGFEVLFRN 28 (112)
T ss_pred CCHHHHHHHHHhccCCEEEEee
Confidence 456788999998 999987754
No 191
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=45.43 E-value=55 Score=18.30 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecC-----------CcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGE-----------SNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~-----------~n~~~~~~~~~~Gf~~~~~ 80 (92)
+....+.+.+.+. +.|++.+...+.. ..+.+++...+.|++....
T Consensus 55 Aq~aae~~~~~~~-~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I 110 (132)
T PRK09607 55 AMQAAEKAAEDAK-EKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRI 110 (132)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEE
Confidence 4456666677776 7899999887744 5678999999999998764
No 192
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=45.24 E-value=19 Score=17.65 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++..+++...... ...+..+--.+..+.....+|.+++||.--..
T Consensus 21 Ia~yil~~~~~~~--~~si~elA~~~~vS~sti~Rf~kkLG~~gf~e 65 (77)
T PF01418_consen 21 IADYILENPDEIA--FMSISELAEKAGVSPSTIVRFCKKLGFSGFKE 65 (77)
T ss_dssp HHHHHHH-HHHHC--T--HHHHHHHCTS-HHHHHHHHHHCTTTCHHH
T ss_pred HHHHHHhCHHHHH--HccHHHHHHHcCCCHHHHHHHHHHhCCCCHHH
Confidence 4444444433322 34444444446666777899999999986553
No 193
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=44.73 E-value=24 Score=17.98 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHh-cCCeeechh
Q 034515 61 ESNGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~~ 81 (92)
++=.++.+||++ +||+.....
T Consensus 11 ~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 11 PDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred CCHHHHHHHHHhccCcEEEeec
Confidence 345788999998 999988643
No 194
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=44.56 E-value=71 Score=20.33 Aligned_cols=46 Identities=20% Similarity=0.142 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
-++++.+++.+. +.|++.-.|--...|+....++..+|.+.....+
T Consensus 234 l~li~~vi~~a~-~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 234 LRLIKQVIDAAH-KAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSP 279 (293)
T ss_dssp HHHHHHHHHHHH-HTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-G
T ss_pred HHHHHHHHHHHh-hcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECH
Confidence 466777777776 7788887777788899999999999999988544
No 195
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=44.35 E-value=78 Score=19.79 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=31.7
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcC
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~G 74 (92)
+.+|-++...+++.+. ..|++.+.+.+...-.....+.+++|
T Consensus 246 ~~~gi~~a~e~~~~l~-~~gv~GvH~~t~n~~~~~~~il~~lg 287 (287)
T PF02219_consen 246 REIGIEIAVELIRELL-AEGVPGVHLYTMNREELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHHH-HTT-SEEEEEETTTSHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHH-HcCCCeEEEEcCCCHHHHHHHHHHcC
Confidence 3466667777777776 56788888888888888899988887
No 196
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=44.13 E-value=46 Score=17.10 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=17.6
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+..+.+.+ ++=.++.+||.+ +||+....
T Consensus 5 i~hi~l~v-~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 5 LGHVELRV-TDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeEEEEEc-CCHHHHHHHHHhccCCEEecc
Confidence 33444444 344678888886 89887643
No 197
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=44.02 E-value=24 Score=18.26 Aligned_cols=19 Identities=26% Similarity=0.558 Sum_probs=14.8
Q ss_pred CCcHHHHHHHHh-cCCeeec
Q 034515 61 ESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~ 79 (92)
.+=.+|.+||++ +||+...
T Consensus 9 ~D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 9 EDVEKTLEFYERAFGFERRF 28 (125)
T ss_pred cCHHHHHHHHHHhhCCeEEe
Confidence 345789999987 7998754
No 198
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=43.72 E-value=22 Score=18.76 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.7
Q ss_pred CcHHHHHHHHh-cCCeeech
Q 034515 62 SNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+=+.|.+||++ +||+....
T Consensus 16 d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 16 DLAGATRFATDILGLQVAER 35 (124)
T ss_pred CHHHHHHHHHhccCceeccC
Confidence 44788999987 79997653
No 199
>PRK11478 putative lyase; Provisional
Probab=43.65 E-value=44 Score=17.38 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=17.7
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
+..+.+.+ ++=.+|.+||.+ +||+...
T Consensus 7 i~hv~l~v-~D~~~a~~FY~~~LG~~~~~ 34 (129)
T PRK11478 7 VHHIAIIA-TDYAVSKAFYCDILGFTLQS 34 (129)
T ss_pred ecEEEEEc-CCHHHHHHHHHHHhCCEecc
Confidence 44444433 555778999964 8998753
No 200
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=43.62 E-value=45 Score=16.79 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.8
Q ss_pred cHHHHHHHHh-cCCeeechh
Q 034515 63 NGASLRLFQK-LGFEDISYS 81 (92)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~~ 81 (92)
=.+|..||+. +||+.....
T Consensus 13 l~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 13 LEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred HhHhHHHHHhhcCCeeeeec
Confidence 4789999997 999998754
No 201
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=43.09 E-value=57 Score=18.08 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=20.1
Q ss_pred cCccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 50 FGIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 50 ~~~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
.++..+.+.+ ++=.++++||++ +||+...
T Consensus 8 ~~l~Hi~l~v-~Dl~~a~~FY~~~LGl~~~~ 37 (154)
T cd07237 8 QGLGHVVLAT-PDPDEAHAFYRDVLGFRLSD 37 (154)
T ss_pred CccCEEEEEe-CCHHHHHHHHHHccCCEEEE
Confidence 4566665555 355778899976 9998754
No 202
>PRK04017 hypothetical protein; Provisional
Probab=43.05 E-value=20 Score=20.00 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=16.3
Q ss_pred eeeeChhhhccChHHHHHHHHHH
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMA 44 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~ 44 (92)
.+.+||++.|.-+.+.+.+.+..
T Consensus 69 IILTD~D~~GekIr~~l~~~l~~ 91 (132)
T PRK04017 69 IILTDFDRKGEELAKKLSEYLQG 91 (132)
T ss_pred EEEECCCcchHHHHHHHHHHHHh
Confidence 45668999988777776666533
No 203
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=42.86 E-value=41 Score=18.40 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=18.4
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+..+.+.+. +=.+|.+||++ +||+....
T Consensus 7 l~Hv~l~v~-Dle~s~~FY~~vLGf~~~~~ 35 (143)
T cd07243 7 LDHCLLTGE-DIAETTRFFTDVLDFYLAER 35 (143)
T ss_pred eCEEEEecC-CHHHHHHHHHHhcCCEEEEE
Confidence 445555443 33788999976 99986543
No 204
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=42.15 E-value=63 Score=19.62 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.8
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
=.|+|.+-.+.++-++. .. +. .+-+....++..|+|+...
T Consensus 126 l~GIG~kTAd~iLlya~-~r--p~-----fvVDty~~Rv~~RlG~~~~ 165 (218)
T PRK13913 126 QKGIGKESADAILCYVC-AK--EV-----MVVDKYSYLFLKKLGIEIE 165 (218)
T ss_pred CCCccHHHHHHHHHHHc-CC--Cc-----cccchhHHHHHHHcCCCCC
Confidence 35999999999998887 32 32 2335668999999999754
No 205
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=42.00 E-value=1e+02 Score=21.65 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
++++.+.+.+. ..|...-.|-....++....++..+||+.....
T Consensus 482 ~~i~~vi~~a~-~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 482 RLIKLVIDAAK-AEGIWVGMCGEMAGDERAIPLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHHHHHHH-HcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEC
Confidence 46677777776 667776555667889999999999999998743
No 206
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=41.46 E-value=52 Score=16.95 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHh----cCCeeech
Q 034515 61 ESNGASLRLFQK----LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~----~Gf~~~~~ 80 (92)
++=.+|.+||++ +||+....
T Consensus 9 ~d~~~s~~FY~~~f~~lg~~~~~~ 32 (123)
T cd07262 9 NDLERARAFYDAVLAPLGIKRVME 32 (123)
T ss_pred CcHHHHHHHHHHHHhhcCceEEee
Confidence 445778999988 59987654
No 207
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.37 E-value=23 Score=20.28 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCeeechh
Q 034515 64 GASLRLFQKLGFEDISYS 81 (92)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~~ 81 (92)
..+..||++.||+.....
T Consensus 70 k~~~~FYEnyGf~A~elp 87 (174)
T COG4904 70 KTVEAFYENYGFSAGELP 87 (174)
T ss_pred HHHHHHHHHcCCCcCCCC
Confidence 446789999999987543
No 208
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=41.32 E-value=29 Score=17.89 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHh-cCCeeech
Q 034515 61 ESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
++=.+|++||++ +||+....
T Consensus 8 ~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 8 RDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred CCHHHHHHHHHHhcCCEEeec
Confidence 444788999985 89988653
No 209
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.19 E-value=90 Score=20.09 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=27.7
Q ss_pred hhccChHHHHHHHHHHHHhhccCccEEEEEec-CCcHHHHHHHHhcC
Q 034515 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG-ESNGASLRLFQKLG 74 (92)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~-~~n~~~~~~~~~~G 74 (92)
=-|.|+|+++..++. ++|.+.+.+.+. ..+....+-.++.|
T Consensus 45 Ggg~GlGr~ialefa-----~rg~~~vl~Din~~~~~etv~~~~~~g 86 (300)
T KOG1201|consen 45 GGGSGLGRLIALEFA-----KRGAKLVLWDINKQGNEETVKEIRKIG 86 (300)
T ss_pred CCCchHHHHHHHHHH-----HhCCeEEEEeccccchHHHHHHHHhcC
Confidence 457899999887763 456666555555 44566677777766
No 210
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=40.92 E-value=40 Score=17.23 Aligned_cols=14 Identities=0% Similarity=-0.164 Sum_probs=6.6
Q ss_pred CccEEEEEecCCcH
Q 034515 51 GIHVFRAKIGESNG 64 (92)
Q Consensus 51 ~~~~i~~~~~~~n~ 64 (92)
++..+.+-++++.+
T Consensus 59 ~~~~iiiatD~D~E 72 (100)
T PF01751_consen 59 KADEIIIATDPDRE 72 (100)
T ss_dssp SCSEEEEEC-SSHH
T ss_pred hccEeeecCCCChH
Confidence 44555555555543
No 211
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=40.84 E-value=1.1e+02 Score=23.51 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.0
Q ss_pred CceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 1 MVGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 1 ~vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
++|++++.... ++...++..--+|+. =+|+...|+..++.+++ +.|++.+.+...+-
T Consensus 432 i~af~s~~p~~---~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k-~~G~~~~sLg~APl 488 (1094)
T PRK02983 432 VVALLSFVPWG---RRGLSLDLMRRSPDA-PNGVIELMVAELALEAE-SLGITRISLNFAVF 488 (1094)
T ss_pred EEEEEEEeeeC---CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHH-HcCCCEEEechhhh
Confidence 35677776643 233556666556665 47999999999999998 88999998877664
No 212
>PF15538 Toxin_61: Putative toxin 61
Probab=40.74 E-value=25 Score=20.16 Aligned_cols=33 Identities=9% Similarity=0.222 Sum_probs=24.1
Q ss_pred EEecCCcHHHHHHHHhcCCeeechhhhHHHhhh
Q 034515 57 AKIGESNGASLRLFQKLGFEDISYSEIFKEVSK 89 (92)
Q Consensus 57 ~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~~~ 89 (92)
+.+....+.+..||++-||...........+|+
T Consensus 19 inirgn~e~a~~F~~s~G~~~~~~~~~m~GIDf 51 (157)
T PF15538_consen 19 INIRGNREIASDFFKSQGLTEADMESYMNGIDF 51 (157)
T ss_pred eeeccchHHHHHHHHHcCCCHHHHHHHhccCCc
Confidence 335566688999999999998876655555554
No 213
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=40.68 E-value=69 Score=18.12 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=29.1
Q ss_pred HHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 42 MMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
..+.+. +.+.+.+|+.....|+.+...++..|-..+-
T Consensus 89 i~~eal-~~~~kv~W~QlGi~n~ea~~~~~~aG~~vV~ 125 (140)
T COG1832 89 VAREAL-EKGAKVVWLQLGIRNEEAAEKARDAGLDVVM 125 (140)
T ss_pred HHHHHH-hhCCCeEEEecCcCCHHHHHHHHHhCcHHHH
Confidence 333443 5579999999999999999999999985443
No 214
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=40.49 E-value=9.5 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.6
Q ss_pred cEEEEEecCCcHHHHHHHHhcCCeeechhhhH
Q 034515 53 HVFRAKIGESNGASLRLFQKLGFEDISYSEIF 84 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (92)
+.++..+.++-.++.++.++-||+..+.++.|
T Consensus 221 q~vIG~vH~~t~pA~~lLe~EGF~~~~yVDIF 252 (336)
T TIGR03245 221 QDAIGQPHPHARDNCQILNREGFEMDRYIDIF 252 (336)
T ss_pred HHHhCCcCCCCHHHHHHHHHcCCccCCccccc
Confidence 34566788889999999999999999977654
No 215
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=39.81 E-value=56 Score=18.81 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=22.6
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
+++|.-|+|.+++ + .+|++.+.+- +.|+....-.+..|-+.++..
T Consensus 123 ~d~R~ygigaqIL-------~-dLGV~~~rLL--tnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 123 EDLRDYGIGAQIL-------R-DLGVKKMRLL--TNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp S----THHHHHHH-------H-HTT--SEEEE---S-HHHHHHHHHTT--EEEEE
T ss_pred cccccHHHHHHHH-------H-HcCCCEEEEC--CCChhHHHHHhcCCCEEEEEe
Confidence 4555556664443 3 5688876544 456778888888888777654
No 216
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.76 E-value=28 Score=17.84 Aligned_cols=19 Identities=5% Similarity=0.055 Sum_probs=14.4
Q ss_pred CCcHHHHHHHHh-cCCeeec
Q 034515 61 ESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~ 79 (92)
.+=.+|.+||++ +||+...
T Consensus 10 ~dl~~s~~FY~~~lg~~~~~ 29 (125)
T cd07241 10 KDLERMKAFYVTYFGATSNE 29 (125)
T ss_pred cCHHHHHHHHHHHhCCEeec
Confidence 344788999987 7998653
No 217
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.74 E-value=53 Score=16.88 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=12.4
Q ss_pred cHHHHHHHHh-cCCeeech
Q 034515 63 NGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 63 n~~~~~~~~~-~Gf~~~~~ 80 (92)
=.+|.+||++ +||+....
T Consensus 12 ~~~a~~FY~~~lG~~~~~~ 30 (120)
T cd07254 12 LEASIAFYSKLFGVEPTKV 30 (120)
T ss_pred HHHHHHHHHHHhCCeEecc
Confidence 3778888874 48876544
No 218
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=39.66 E-value=95 Score=22.92 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=43.5
Q ss_pred hhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.+|++....++..-+..++ +.|++.+.+.-.+.++.-..+..++|+-....
T Consensus 313 ~~G~~~~~~~~~~dl~lmk-~~n~N~vRtsHyP~~~~~ydLcDelGllV~~E 363 (808)
T COG3250 313 ILGRVTDEDAMERDLKLMK-EANMNSVRTSHYPNSEEFYDLCDELGLLVIDE 363 (808)
T ss_pred ccccccCHHHHHHHHHHHH-HcCCCEEEecCCCCCHHHHHHHHHhCcEEEEe
Confidence 4566667787888888988 89999999999999999999999999987764
No 219
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=39.50 E-value=56 Score=18.29 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=14.6
Q ss_pred CCcHHHHHHHHh-cCCeeech
Q 034515 61 ESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
++=.+|.+||++ +||+....
T Consensus 10 ~Dle~s~~FY~~~LG~~~~~~ 30 (157)
T cd08347 10 RDPEATAAFLTDVLGFREVGE 30 (157)
T ss_pred CCHHHHHHHHHHhcCCEEEee
Confidence 344788999975 69987654
No 220
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.31 E-value=58 Score=16.88 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=17.8
Q ss_pred cEEEEEecCCcHHHHHHHHhc----CCeeech
Q 034515 53 HVFRAKIGESNGASLRLFQKL----GFEDISY 80 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~~----Gf~~~~~ 80 (92)
..+.+.+ .+=.++.+||++. ||+....
T Consensus 3 ~Hv~i~v-~d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 3 HHVELTV-RDLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred ceEEEEe-CCHHHHHHHHHHHHhhcCCEEEEe
Confidence 3444444 3457789999875 9987664
No 221
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.98 E-value=80 Score=18.33 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHH---HHHHHhcCCeeechhhh
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDISYSEI 83 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~---~~~~~~~Gf~~~~~~~~ 83 (92)
-+|..+...+.+... +.|+.-..=.|..-|.+. +..++..|++.+...+.
T Consensus 48 evae~i~~~l~~~~~-~tGv~lA~Q~CEHlNRAlvvEr~~ae~~~~e~VsvvP~ 100 (180)
T COG4475 48 EVAETIVSALLDVLK-KTGVHLAFQGCEHLNRALVVEREVAEPFGLEIVSVVPV 100 (180)
T ss_pred HHHHHHHHHHHHHHh-ccceEEEeehhhhhhhHhhhhHhhhcccCCeeEEeecc
Confidence 467777888888876 889888777788888765 67888999998876553
No 222
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=38.82 E-value=34 Score=17.71 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=16.2
Q ss_pred CCcHHHHHHHH-hcCCeeech
Q 034515 61 ESNGASLRLFQ-KLGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~-~~Gf~~~~~ 80 (92)
.+=.+|..||+ .+||+....
T Consensus 8 ~d~~~a~~FY~~~lG~~~~~~ 28 (122)
T cd08355 8 RDAAAAIDWLTDAFGFEERLV 28 (122)
T ss_pred CCHHHHHHHHHHhcCCEEEEE
Confidence 35578999998 999998764
No 223
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=38.43 E-value=61 Score=16.82 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
|-.++..+.+.++ ..|.+...+.+ ++...+.+++.|+..
T Consensus 65 gi~~L~~~~~~~~-~~g~~~~l~~~---~~~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 65 GIQALVDIIKELR-RRGVQLVLVGL---NPDVRRILERSGLID 103 (117)
T ss_dssp HHHHHHHHHHHHH-HTTCEEEEESH---HHHHHHHHHHTTGHH
T ss_pred HHHHHHHHHHHHH-HCCCEEEEEEC---CHHHHHHHHHcCCCh
Confidence 4455666666766 66777665544 777888899999863
No 224
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=38.26 E-value=64 Score=17.01 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=34.0
Q ss_pred cceeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcH
Q 034515 15 LELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNG 64 (92)
Q Consensus 15 ~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~ 64 (92)
+...+++.+++...-++.|++..+...+.+. .+.+...+.++|+
T Consensus 31 ~~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d------~p~L~W~~r~~n~ 74 (98)
T cd04263 31 GEVATLATFTITKSGWLNNVADNIFTAIKKD------HPKLVWTVREDDE 74 (98)
T ss_pred CCCEEEEEEEEccccccccHHHHHHHHHHhh------CCeeEEEeCCCCC
Confidence 3678999999988888889998888877544 2356777877776
No 225
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=38.12 E-value=80 Score=18.92 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhhHHHh
Q 034515 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEV 87 (92)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (92)
-+...+.+.++ ..|..... ...+.--..+...+||...++...+..+
T Consensus 38 TiA~ale~~L~-~~G~~~y~---LDGDnvR~gL~~dLgFs~edR~eniRRv 84 (197)
T COG0529 38 TIANALEEKLF-AKGYHVYL---LDGDNVRHGLNRDLGFSREDRIENIRRV 84 (197)
T ss_pred HHHHHHHHHHH-HcCCeEEE---ecChhHhhcccCCCCCChHHHHHHHHHH
Confidence 45555566666 77877653 3334445678899999999887665443
No 226
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=38.08 E-value=35 Score=17.65 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHh-cCCeeec
Q 034515 61 ESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~ 79 (92)
.+=.+|.+||++ +||+...
T Consensus 11 ~D~~~a~~FY~~~lG~~~~~ 30 (120)
T cd09011 11 KDIEKSKKFYEKVLGLKVVM 30 (120)
T ss_pred CCHHHHHHHHHHhcCCEEee
Confidence 455889999985 9998753
No 227
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=38.01 E-value=67 Score=17.17 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=34.3
Q ss_pred ccChHHHHHHHHHHHHhhccC-ccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 31 GKGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.-|+-..+++.+.+.+..... ++..++.+....+.|..+.+++|=+...
T Consensus 30 ~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 30 RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 457778888888888764433 8899999999999999999999876554
No 228
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=37.56 E-value=92 Score=18.66 Aligned_cols=57 Identities=7% Similarity=-0.019 Sum_probs=36.1
Q ss_pred ceeEEEEeccCCccc--eeeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEe
Q 034515 2 VGDVNIYMNDLDNLE--LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI 59 (92)
Q Consensus 2 vG~~~~~~~~~~~~~--~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~ 59 (92)
+|++.+....+.... ...--++-++|+|+|-.|.++---.+.+... +.-+....+.+
T Consensus 122 lGylml~Ed~p~S~~pVr~~~phFpv~p~F~g~SY~~Ry~ilc~rLv~-e~lY~aa~l~~ 180 (196)
T PF04555_consen 122 LGYLMLVEDCPESRRPVRVSEPHFPVDPEFKGASYLKRYEILCERLVQ-ERLYTAACLIT 180 (196)
T ss_pred eEEEEEEeecccccCCCcCCCCCCCccHHhcCCcHHHHHHHHHHHHHH-hcccceeEEEE
Confidence 566666655533211 1233568889999999999987777666665 54444444433
No 229
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=37.46 E-value=32 Score=15.09 Aligned_cols=14 Identities=21% Similarity=0.679 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCee
Q 034515 64 GASLRLFQKLGFED 77 (92)
Q Consensus 64 ~~~~~~~~~~Gf~~ 77 (92)
....++.+++||++
T Consensus 3 ~~g~~lm~kmGw~~ 16 (45)
T PF01585_consen 3 SIGFKLMKKMGWKP 16 (45)
T ss_pred cHHHHHHHHCCCCC
Confidence 34678889999986
No 230
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=37.35 E-value=93 Score=18.62 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=29.4
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
+++|.-|+|.+++. ..|++.+.+-+. |+.-..-.+..|-+.+.+.+
T Consensus 124 ~D~R~ygigAqIL~--------dLGI~~irLLtn--np~K~~~l~~~Gi~vverv~ 169 (193)
T COG0807 124 ADERDYGIGAQILK--------DLGIKKIRLLTN--NPRKIYGLEGFGINVVERVP 169 (193)
T ss_pred chHHHHHHHHHHHH--------HcCCcEEEEecC--ChHHHHHHHhCCceEEEEee
Confidence 45666666655443 568887766553 77677777777766666543
No 231
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=37.21 E-value=73 Score=17.39 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=18.2
Q ss_pred cCccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 50 FGIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 50 ~~~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
.++..+.+.+ .+=.+|..||++ +||+...
T Consensus 16 ~~i~hv~l~v-~Dl~~a~~FY~~vLG~~~~~ 45 (150)
T TIGR00068 16 RRLLHTMLRV-GDLDKSLDFYTEVLGMKLLR 45 (150)
T ss_pred ceEEEEEEEe-cCHHHHHHHHHHhcCCEEEE
Confidence 4455555544 344678888874 8888654
No 232
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=36.85 E-value=67 Score=16.87 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=14.8
Q ss_pred CCcHHHHHHHHh-cCCeeech
Q 034515 61 ESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
++=.++.+||++ +||+....
T Consensus 10 ~D~~~s~~FY~~~lG~~~~~~ 30 (134)
T cd08348 10 RDLEAMVRFYRDVLGFTVTDR 30 (134)
T ss_pred cCHHHHHHHHHHhcCCEEEee
Confidence 444778889986 89987654
No 233
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.65 E-value=62 Score=20.11 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=27.2
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
...|.--|...+..++.++. +.|++.+.+-...
T Consensus 42 ~~~GH~~G~~~l~~i~~~c~-~~GI~~vT~yaFS 74 (249)
T PRK14831 42 RIMGHRRGVDALKDLLRCCK-DWGIGALTAYAFS 74 (249)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecc
Confidence 34455568899999999998 8999999888876
No 234
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=36.15 E-value=66 Score=16.55 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=17.8
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
..+.+.+ ++=.++.+||.+ +||+....
T Consensus 4 ~hi~l~v-~d~~~~~~Fy~~~lG~~~~~~ 31 (125)
T cd07255 4 GAVTLRV-ADLERSLAFYQDVLGLEVLER 31 (125)
T ss_pred EEEEEEE-CCHHHHHHHHHhccCcEEEEc
Confidence 3444434 344677899985 89988765
No 235
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=36.07 E-value=59 Score=22.50 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=29.6
Q ss_pred HHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 45 YAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 45 ~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
..+ +.|-..+...|-+.|+.-+.|.++-||-...
T Consensus 328 ~~~-HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~ 361 (542)
T KOG2499|consen 328 EFF-HLGGDEVSTPCWKSNPEIQDFMRKKGFGLDT 361 (542)
T ss_pred HHe-ecCCceeecccccCChHHHHHHHhCCCCchH
Confidence 344 5788999999999999999999999998765
No 236
>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]
Probab=35.27 E-value=70 Score=16.59 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=33.8
Q ss_pred eeeeeeeeeChhhhccChHH--HHHHHHHHHHhhccCccEEEEEecCCc
Q 034515 17 LAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKIGESN 63 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~--~l~~~~~~~~~~~~~~~~i~~~~~~~n 63 (92)
..++...+|.|.|+|+-.-. +++..+++... ..++.-+.+.+.+..
T Consensus 38 ~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del-~~~iHALal~t~t~~ 85 (90)
T COG0271 38 GSHFKVVIVSEAFQGKSLVARHRLVYSALKDEL-SGGIHALALHTYTPE 85 (90)
T ss_pred CCeEEEEEEchhhCCccHHHHHHHHHHHHHHHH-hccceeeEeEeeccc
Confidence 35778889999999997644 67777777666 556888877776544
No 237
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=34.78 E-value=69 Score=16.41 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
|-.++..+.+.++ ..|.+-..+.+ ++...+.+++.|+..
T Consensus 58 g~~~l~~~~~~~~-~~g~~l~l~g~---~~~v~~~l~~~gl~~ 96 (109)
T cd07041 58 VARHLLRLARALR-LLGARTILTGI---RPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEeC---CHHHHHHHHHhCCCh
Confidence 4446666667766 66766654444 778889999999866
No 238
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=34.68 E-value=1.2e+02 Score=22.70 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHhhc-cCccEEEEEecCCcHHHHHHHHhcCCeeechhhh
Q 034515 33 GLAKDAVLMMMAYAVEN-FGIHVFRAKIGESNGASLRLFQKLGFEDISYSEI 83 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~-~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~ 83 (92)
|++ +|++.+.+.+++. .+++.-.|--...++.+..|+.++|+..+...+.
T Consensus 808 aV~-~Li~~~v~~~r~~~~~~~vgICGE~ggdp~~i~~l~~lGld~vS~sP~ 858 (879)
T PRK09279 808 GVG-ELVEIAVERGRATRPDLKLGICGEHGGDPASIEFCHKVGLDYVSCSPY 858 (879)
T ss_pred HHH-HHHHHHHHHHHhcCCCCEEEECCCCccCHHHHHHHHHCCCCEEEECHH
Confidence 444 5566666666622 4666555555578999999999999999986553
No 239
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=34.50 E-value=39 Score=16.45 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCeeech
Q 034515 64 GASLRLFQKLGFEDISY 80 (92)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~ 80 (92)
.-.++..++.||..+.+
T Consensus 10 ke~ik~Le~~Gf~~vrq 26 (66)
T COG1724 10 KEVIKALEKDGFQLVRQ 26 (66)
T ss_pred HHHHHHHHhCCcEEEEe
Confidence 34688899999998874
No 240
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=34.49 E-value=1.2e+02 Score=20.77 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=32.0
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
.+++...+..-|+|.++...+.+..++....+...+.....-.....++++.|.
T Consensus 395 vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l 448 (464)
T PRK11892 395 LVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLAL 448 (464)
T ss_pred EEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcC
Confidence 355666666679999999999887652233333333221111224457788777
No 241
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=34.40 E-value=28 Score=17.51 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=16.1
Q ss_pred EEEEecCCcHHHHHHHHhc
Q 034515 55 FRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 55 i~~~~~~~n~~~~~~~~~~ 73 (92)
+++.+.|+|..|+..|.+.
T Consensus 20 LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 20 LYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHhcCCCCcHHHHHHHHHH
Confidence 5788999999999988764
No 242
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=34.25 E-value=1e+02 Score=18.21 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
|+-|+..+++.+. . .+..+..-+.++.+....+..+.|.+.+..
T Consensus 26 GkpLI~~v~~al~-~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~t 69 (177)
T COG2266 26 GKPLIDRVLEALR-K-IVDEIIVAISPHTPKTKEYLESVGVKVIET 69 (177)
T ss_pred CccHHHHHHHHHH-h-hcCcEEEEeCCCCHhHHHHHHhcCceEEEc
Confidence 5667777777776 3 788899999999999999999999888875
No 243
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=34.07 E-value=40 Score=17.16 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+|+..+-+......|-+.-.-.+...-.....-.++.||+.++.
T Consensus 26 ~LM~~LgA~~~~~lgn~f~ey~~~~~Pr~VLnKLE~~G~kVvsm 69 (83)
T PF06399_consen 26 ELMAYLGAKKRTPLGNNFKEYHVDDPPRVVLNKLEKMGYKVVSM 69 (83)
T ss_dssp HHHHHHT-EEE--TT-SS-EEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHhcCceeccccCcceEEEcCCChHHHHHHHHhcCeEEEEE
Confidence 55555555433234444334445455555688899999998873
No 244
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.87 E-value=1.1e+02 Score=19.05 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=26.0
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHh
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 72 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~ 72 (92)
+||| +|.+-++.+.+... +.|+..+ +...+.....+..+
T Consensus 59 sf~G--~G~~gl~~L~~~~~-~~Gl~~~---Tev~d~~~v~~~~e 97 (250)
T PRK13397 59 SFQG--LGLQGIRYLHEVCQ-EFGLLSV---SEIMSERQLEEAYD 97 (250)
T ss_pred ccCC--CCHHHHHHHHHHHH-HcCCCEE---EeeCCHHHHHHHHh
Confidence 4555 55578888888876 8899977 34445556655544
No 245
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=33.72 E-value=57 Score=19.00 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=17.4
Q ss_pred ccEEEEEecC-CcHHHHHHHHh-cCCeeech
Q 034515 52 IHVFRAKIGE-SNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~-~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+.++...+.. +=..+..||++ +||+....
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~ 34 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWS 34 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeE
Confidence 3444444432 34677888865 88887654
No 246
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=33.69 E-value=85 Score=17.52 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=16.9
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
+..+.+.+ ++=.+|.+||++ +||+...
T Consensus 4 l~Hv~l~V-~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 4 LDHFNLRV-PDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred EEEEEEec-CCHHHHHHHHHhccCCEEEE
Confidence 33444433 333778899987 8987653
No 247
>PRK07758 hypothetical protein; Provisional
Probab=33.62 E-value=49 Score=17.39 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=15.9
Q ss_pred ccChHHHHHHHHHHHHhhccCc
Q 034515 31 GKGLAKDAVLMMMAYAVENFGI 52 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~ 52 (92)
=+|+|...++.+.+.+. +.|+
T Consensus 72 iknlGkKSL~EIkekL~-E~GL 92 (95)
T PRK07758 72 LHGMGPASLPKLRKALE-ESGL 92 (95)
T ss_pred ccCCCHHHHHHHHHHHH-HcCC
Confidence 35788888888888886 6554
No 248
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=33.51 E-value=72 Score=16.20 Aligned_cols=19 Identities=16% Similarity=0.504 Sum_probs=14.8
Q ss_pred CcHHHHHHHH-hcCCeeech
Q 034515 62 SNGASLRLFQ-KLGFEDISY 80 (92)
Q Consensus 62 ~n~~~~~~~~-~~Gf~~~~~ 80 (92)
+=..|.+||. .+||+....
T Consensus 11 d~~~a~~FY~~~lG~~~~~~ 30 (122)
T cd07246 11 DAAAAIDFYKKAFGAEELER 30 (122)
T ss_pred CHHHHHHHHHHhhCCEEEEE
Confidence 5578899998 489998754
No 249
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=33.43 E-value=45 Score=14.96 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=10.5
Q ss_pred HHHHHHhcCCeeec
Q 034515 66 SLRLFQKLGFEDIS 79 (92)
Q Consensus 66 ~~~~~~~~Gf~~~~ 79 (92)
..++++++||+...
T Consensus 4 l~k~L~~~G~~~~r 17 (56)
T PF07927_consen 4 LIKLLEKAGFEEVR 17 (56)
T ss_dssp HHHHHHHTT-EEEE
T ss_pred HHHHHHHCCCEEec
Confidence 56788999998875
No 250
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=33.19 E-value=1.2e+02 Score=19.24 Aligned_cols=47 Identities=28% Similarity=0.245 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
|+|+--+..+......+.|.+.+.+++++...-+--|=.++|-++..
T Consensus 11 GVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~~~~~~ 57 (305)
T PF02374_consen 11 GVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLGGEPTK 57 (305)
T ss_dssp TSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--BSS-EE
T ss_pred CCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCCCCCeE
Confidence 78888888777766667899999999998877666665566655554
No 251
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=32.94 E-value=27 Score=16.64 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=16.6
Q ss_pred cCCcHHHHHHHHhcCCeee
Q 034515 60 GESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 60 ~~~n~~~~~~~~~~Gf~~~ 78 (92)
..+|+.+-.|..++|-+..
T Consensus 5 ESDnETA~~FL~RvGr~q~ 23 (60)
T PF06072_consen 5 ESDNETATEFLRRVGRQQH 23 (60)
T ss_pred ccccccHHHHHHHHhHHHH
Confidence 5789999999999998873
No 252
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=32.90 E-value=88 Score=19.19 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=23.9
Q ss_pred HHHHHHhhcc--CccEEEEEecCCcHHHHHHHHhc
Q 034515 41 MMMAYAVENF--GIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 41 ~~~~~~~~~~--~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
.++++++++. ..+-|.--.+.+|..+.++|+.+
T Consensus 82 ~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~em 116 (223)
T cd00218 82 LALRWIREHLSAKLDGVVYFADDDNTYDLELFEEM 116 (223)
T ss_pred HHHHHHHhccccCcceEEEEccCCCcccHHHHHHH
Confidence 5566665221 45667777899999999999984
No 253
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.50 E-value=48 Score=16.96 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=14.9
Q ss_pred CCcHHHHHHHHh-cCCeeech
Q 034515 61 ESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
.+=.+|..||.+ +||+....
T Consensus 10 ~D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 10 DDLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred CCHHHHHHHHHHhhCcEEEec
Confidence 344678999964 99987754
No 254
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=32.29 E-value=47 Score=14.48 Aligned_cols=15 Identities=20% Similarity=0.694 Sum_probs=11.8
Q ss_pred cHHHHHHHHhcCCee
Q 034515 63 NGASLRLFQKLGFED 77 (92)
Q Consensus 63 n~~~~~~~~~~Gf~~ 77 (92)
+....++.+++||++
T Consensus 4 ~~~g~~~l~~mGw~~ 18 (47)
T smart00443 4 SNIGYKLLRKMGWKE 18 (47)
T ss_pred ccHHHHHHHHcCCCC
Confidence 445678999999986
No 255
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.24 E-value=71 Score=19.58 Aligned_cols=59 Identities=17% Similarity=0.212 Sum_probs=38.7
Q ss_pred eeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC-cHHHHHHHHhcCCeeec
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES-NGASLRLFQKLGFEDIS 79 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~-n~~~~~~~~~~Gf~~~~ 79 (92)
....+++ |...+.|+-++|-+...+... +.-.+...|...++ |+.-.+|.++.|-=.+.
T Consensus 80 ~~~alIv-p~~~~~g~rkqL~~~~~~~g~-e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~ve 139 (224)
T COG1810 80 GVKALIV-PAEPPEGLRKQLKEFCEELGV-EFEAPEPFCSLEPNENPHIDEFAERFGKPEVE 139 (224)
T ss_pred CccEEEE-ecCCChhHHHHHHHHhhhcce-eeecCCccccCCCCCChHHHHHHHHcCCceEE
Confidence 4455665 788888888887777655543 44445556665544 47888899888754443
No 256
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=32.21 E-value=46 Score=17.22 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=18.5
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+..+.+.+ ++=.+|.+||++ +||+....
T Consensus 7 i~hv~l~v-~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 7 LAHVELLT-PKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred eeEEEEEe-CCHHHHHHHHHhCcCCEEEee
Confidence 34444444 333788999987 69988764
No 257
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=31.93 E-value=1e+02 Score=19.09 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=34.6
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
-|.|+--+...+.++....|-+.+.+...+.| +.+++=.+.+...
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dpqN--~Lrlhfg~~~~~~ 55 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDPQN--LLRLHFGLPLDDR 55 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH--HHHHhcCCCCccc
Confidence 48899888888888887889998888888888 6666655555543
No 258
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.70 E-value=79 Score=19.56 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=26.7
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEec
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~ 60 (92)
|...|.--|...+..++.++. +.|++.+.+-..
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~-~~gI~~vTvYaF 67 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAI-EAGVPYLSLYTF 67 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeee
Confidence 334455568899999999998 899999988777
No 259
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.56 E-value=52 Score=17.55 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=17.9
Q ss_pred cEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 53 HVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 53 ~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
..+.+.+ .+=.+|.+||++ +||+....
T Consensus 5 ~hi~l~v-~dl~~s~~FY~~vlGl~~~~~ 32 (134)
T cd08360 5 GHVVLFV-PDVEAAEAFYRDRLGFRVSDR 32 (134)
T ss_pred eEEEEEc-CCHHHHHHHHHHhcCCEEEEE
Confidence 3444443 344788999976 79987654
No 260
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=30.76 E-value=91 Score=19.12 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=28.4
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|+--|...+..+++++. +.|++.+.+-+.+.
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~-~~GI~~lT~yaFSt 54 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCA-NLGVECLTLYAFST 54 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 455677778899999999998 89999988777644
No 261
>PHA03005 sulfhydryl oxidase; Provisional
Probab=30.72 E-value=40 Score=17.64 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=12.7
Q ss_pred ChhhhccChHHHHHHHH
Q 034515 26 EPKSRGKGLAKDAVLMM 42 (92)
Q Consensus 26 ~~~~r~~G~g~~l~~~~ 42 (92)
+|.|+|+++-+.+.-.+
T Consensus 2 dPk~WGra~W~vIFivi 18 (96)
T PHA03005 2 NPKYWGRAIWTVIFIVI 18 (96)
T ss_pred CcchhhhhHHHHHHHHH
Confidence 68899998887766443
No 262
>PLN02300 lactoylglutathione lyase
Probab=30.51 E-value=76 Score=19.67 Aligned_cols=28 Identities=7% Similarity=0.273 Sum_probs=18.8
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 51 GIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
++..+.+.+ ++=.+|.+||++ +||+...
T Consensus 24 ~l~Hv~l~V-~Dle~s~~FY~~vLG~~~~~ 52 (286)
T PLN02300 24 RMLHVVYRV-GDLDRTIKFYTECLGMKLLR 52 (286)
T ss_pred eEEEEEEEe-CCHHHHHHHHHHhcCCEEEE
Confidence 444444444 344789999976 7998865
No 263
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=30.48 E-value=1.1e+02 Score=20.17 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.7
Q ss_pred ceeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 16 ELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
..+++..+.++.+.|++.+...|+.++-+.+.
T Consensus 164 ~~~evNFLCihk~lRsKRltPvLIkEiTRR~n 195 (451)
T COG5092 164 SVLEVNFLCIHKELRSKRLTPVLIKEITRRAN 195 (451)
T ss_pred ccceEEEEEEehhhhhCccchHHHHHHHHhhh
Confidence 57899999999999999999999999888775
No 264
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.32 E-value=89 Score=19.22 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=28.1
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|+--|...+..+++++. +.|++.+.+-+.+.
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c~-~~GI~~lT~YaFS~ 61 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHSL-KLGIKYLSLYVFST 61 (230)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 445566678899999999998 89999988877644
No 265
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=30.31 E-value=1.7e+02 Score=22.33 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=40.6
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
|+.+-.+.+..-+..++ +.|+..|.+...+.++.-..+.-++|+-....
T Consensus 365 G~a~t~e~~~~di~lmK-~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE 413 (1027)
T PRK09525 365 GQVMDEETMVQDILLMK-QHNFNAVRCSHYPNHPLWYELCDRYGLYVVDE 413 (1027)
T ss_pred CccCCHHHHHHHHHHHH-HCCCCEEEecCCCCCHHHHHHHHHcCCEEEEe
Confidence 44456677777788887 89999999998888889999999999987765
No 266
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=29.91 E-value=1.2e+02 Score=17.64 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHH---HHHHHhcCCeee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGAS---LRLFQKLGFEDI 78 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~---~~~~~~~Gf~~~ 78 (92)
+..+.+.+++.+. +.+...+.=.+..+-... .+.+++.||+..
T Consensus 78 a~~~~~~~~~~a~-~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~ 123 (199)
T PF06414_consen 78 ASRLAEKLIEYAI-ENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVE 123 (199)
T ss_dssp HHHHHHHHHHHHH-HCT--EEEE--TTSSHHHHHHHHHHHCTT-EEE
T ss_pred HHHHHHHHHHHHH-HcCCCEEEecCCCChhHHHHHHHHHHcCCceEE
Confidence 5667788888887 667766554455443333 356778899854
No 267
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.62 E-value=70 Score=14.83 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=18.2
Q ss_pred ccEEEEEecCCcH-HHHHHHHhcCCeeec
Q 034515 52 IHVFRAKIGESNG-ASLRLFQKLGFEDIS 79 (92)
Q Consensus 52 ~~~i~~~~~~~n~-~~~~~~~~~Gf~~~~ 79 (92)
...+...+...+. ...+..++.||+...
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3445555554455 778888888987653
No 268
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=29.57 E-value=1.5e+02 Score=18.51 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=27.3
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
-+|.|.+-+..+.+++. +.|+..+ +.+.+..+..+..++
T Consensus 70 ~~g~g~~gl~~l~~~~~-~~Gl~~~---t~~~d~~~~~~l~~~ 108 (260)
T TIGR01361 70 FQGLGEEGLKLLRRAAD-EHGLPVV---TEVMDPRDVEIVAEY 108 (260)
T ss_pred ccccHHHHHHHHHHHHH-HhCCCEE---EeeCChhhHHHHHhh
Confidence 35667888888888886 8898877 445555566665543
No 269
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=29.54 E-value=56 Score=13.72 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.2
Q ss_pred cHHHHHHHHhcCCe
Q 034515 63 NGASLRLFQKLGFE 76 (92)
Q Consensus 63 n~~~~~~~~~~Gf~ 76 (92)
+...+++|++.|.-
T Consensus 12 s~~tlR~ye~~Gll 25 (38)
T PF00376_consen 12 SPRTLRYYEREGLL 25 (38)
T ss_dssp -HHHHHHHHHTTSS
T ss_pred CHHHHHHHHHCCCC
Confidence 46789999999976
No 270
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.43 E-value=1.1e+02 Score=16.99 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=25.8
Q ss_pred ChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhhHHH
Q 034515 26 EPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKE 86 (92)
Q Consensus 26 ~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~ 86 (92)
.|+|.- ++.+++.++ +.|++.+.+.. |-|. ++|.-.|+....+...+..
T Consensus 32 SpEy~D-------l~l~L~~~k-~~g~~~lfVi~-PvNg---~wydytG~~~~~r~~~y~k 80 (130)
T PF04914_consen 32 SPEYDD-------LQLLLDVCK-ELGIDVLFVIQ-PVNG---KWYDYTGLSKEMRQEYYKK 80 (130)
T ss_dssp -THHHH-------HHHHHHHHH-HTT-EEEEEE-----H---HHHHHTT--HHHHHHHHHH
T ss_pred CccHHH-------HHHHHHHHH-HcCCceEEEec-CCcH---HHHHHhCCCHHHHHHHHHH
Confidence 466665 677888887 88998766644 4443 3555555555554444443
No 271
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=29.43 E-value=1.1e+02 Score=16.99 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.1
Q ss_pred eeeeChhhhccChHHHH---HHHHHHHHhhccCccEEEEEecCCc
Q 034515 22 IMIAEPKSRGKGLAKDA---VLMMMAYAVENFGIHVFRAKIGESN 63 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l---~~~~~~~~~~~~~~~~i~~~~~~~n 63 (92)
.++..|.||.+=+-... +..++....++.++..+.+.+.++.
T Consensus 15 H~v~~~kyRr~vl~~~~~~~l~~~l~~~~~~~~~eI~a~~v~pdH 59 (136)
T COG1943 15 HFVWVPKYRRKVLTGEVLNLLRSILREVAEQKNFEILAMEVMPDH 59 (136)
T ss_pred EEEEeccCchHhhhHhHHHHHHHHHHHHHHhCCCEEEEEEecCCE
Confidence 34445899988555433 3333333334778888877777663
No 272
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=29.40 E-value=60 Score=19.32 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=19.0
Q ss_pred cCCcHHHHHHHHhcCCeeechhhhH
Q 034515 60 GESNGASLRLFQKLGFEDISYSEIF 84 (92)
Q Consensus 60 ~~~n~~~~~~~~~~Gf~~~~~~~~~ 84 (92)
.+...++.+..++.||+.++.+..|
T Consensus 140 t~~S~~mskaLKkrGf~fvGpTt~y 164 (188)
T COG2818 140 TELSDAMSKALKKRGFKFVGPTTVY 164 (188)
T ss_pred chhHHHHHHHHHHccCeecCcHHHH
Confidence 3445678888999999999966544
No 273
>PF13289 SIR2_2: SIR2-like domain
Probab=29.23 E-value=99 Score=16.49 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=9.4
Q ss_pred HHHHHHHHhcCCee
Q 034515 64 GASLRLFQKLGFED 77 (92)
Q Consensus 64 ~~~~~~~~~~Gf~~ 77 (92)
.....++++.|.+.
T Consensus 129 ~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 129 ENEREFLEKYGIEV 142 (143)
T ss_pred HHHHHHHHHcCCEE
Confidence 66677777777654
No 274
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=29.12 E-value=60 Score=22.93 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=24.5
Q ss_pred EEecCCcHHHHHHHHhcCCeeechhhhHHHhhh
Q 034515 57 AKIGESNGASLRLFQKLGFEDISYSEIFKEVSK 89 (92)
Q Consensus 57 ~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~~~ 89 (92)
+....++.-...+.++.||+.......|.++..
T Consensus 369 l~s~vSs~l~~~ia~~eGf~~~~tltGFKwvgn 401 (607)
T KOG1220|consen 369 LNSTVSSGLTRFIAEIEGFHHEETLTGFKWVGN 401 (607)
T ss_pred hhhHHHHHHHHHHHHHhCceeeeccccchhhhH
Confidence 444455666677788889999998888877753
No 275
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=29.10 E-value=1.5e+02 Score=19.34 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=37.3
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
-|+...+..+-+..+.++++ +.|+..+ +.+-+..+..+.+++|-....
T Consensus 67 ~~~~~~l~~e~~~~L~~~~~-~~Gi~~~---stpfd~~svd~l~~~~v~~~K 114 (329)
T TIGR03569 67 MLKKLELSEEDHRELKEYCE-SKGIEFL---STPFDLESADFLEDLGVPRFK 114 (329)
T ss_pred HHHHhCCCHHHHHHHHHHHH-HhCCcEE---EEeCCHHHHHHHHhcCCCEEE
Confidence 45566777888899999997 8898877 556688899999998665544
No 276
>PF13592 HTH_33: Winged helix-turn helix
Probab=29.08 E-value=71 Score=14.76 Aligned_cols=32 Identities=34% Similarity=0.586 Sum_probs=20.8
Q ss_pred HHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 42 MMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+.+++.++.|+.. +.....++..++||.....
T Consensus 10 i~~~I~~~fgv~y-------s~~~v~~lL~r~G~s~~kp 41 (60)
T PF13592_consen 10 IAAYIEEEFGVKY-------SPSGVYRLLKRLGFSYQKP 41 (60)
T ss_pred HHHHHHHHHCCEE-------cHHHHHHHHHHcCCccccC
Confidence 3444444556442 3466789999999988763
No 277
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.86 E-value=1.4e+02 Score=18.24 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=31.6
Q ss_pred ceeEEEEeccCCccceeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 2 VGDVNIYMNDLDNLELAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 2 vG~~~~~~~~~~~~~~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
||.+.+..-..+. ..+-+-.-.-||.+-..|.||.++..+-..+.
T Consensus 166 vgSvAi~~L~~~~-~~gllafgS~D~~hf~~gmGT~fL~~la~vl~ 210 (218)
T COG3159 166 VGSVAIVPLGSQA-PLGLLAFGSRDPRHFQPGMGTLFLRHLALVLA 210 (218)
T ss_pred cceeEEEEccCCC-CceEEEecCCCccccCCCcchHHHHHHHHHHH
Confidence 4555555555332 55666667778888889999999998876654
No 278
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.70 E-value=60 Score=16.35 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=14.7
Q ss_pred CcHHHHHHHHh-cCCeeech
Q 034515 62 SNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+=.++.+||++ +||+....
T Consensus 8 d~~~s~~Fy~~~lg~~~~~~ 27 (113)
T cd08345 8 DLNKSIAFYRDILGAELIYS 27 (113)
T ss_pred CHHHHHHHHHHhcCCeeeec
Confidence 44788999997 89987653
No 279
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.64 E-value=91 Score=15.85 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=14.4
Q ss_pred CCcHHHHHHHH-hcCCeeec
Q 034515 61 ESNGASLRLFQ-KLGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~-~~Gf~~~~ 79 (92)
.+-..+..||+ -+||+...
T Consensus 9 ~d~~~s~~Fy~~~lG~~~~~ 28 (122)
T cd08354 9 DDLEAAEAFYEDVLGLELML 28 (122)
T ss_pred CCHHHHHHHHHhccCCEEee
Confidence 34577899997 47999876
No 280
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=28.62 E-value=85 Score=18.55 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=16.9
Q ss_pred CcHHHHHHHHhcCCeeechhh
Q 034515 62 SNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 62 ~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
+-..+..+++++||+....+.
T Consensus 87 D~~~~~~il~~LGF~~~~~Vk 107 (178)
T COG1437 87 DVEKALEILKRLGFKEVAVVK 107 (178)
T ss_pred CHHHHHHHHHHcCCceeeEEE
Confidence 446789999999999988543
No 281
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=28.60 E-value=1.1e+02 Score=16.74 Aligned_cols=47 Identities=11% Similarity=0.270 Sum_probs=27.4
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEe-cCCcHHHHHHHHhc
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKI-GESNGASLRLFQKL 73 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~-~~~n~~~~~~~~~~ 73 (92)
..++.|+.-.+|...++++.+.+. |+..+.... .-+...+.+||...
T Consensus 4 l~iIKPd~~~~~~~g~Il~~i~~~-----Gf~I~~~k~~~lt~~~a~~~Y~~~ 51 (133)
T cd00595 4 LALIKPDAVAEGLLGEIIMRIEDA-----GFEIVAMKELHLTEEQAEEFYVEH 51 (133)
T ss_pred EEEECchHHhcCcHHHHHHHHHHc-----CCEEEEeeeecCCHHHHHHHHHHh
Confidence 456789887778777777776543 333333222 23334556777653
No 282
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.48 E-value=92 Score=19.97 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=25.6
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEec
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~ 60 (92)
...|+--|...+..++.++. +.|++.+.+-..
T Consensus 89 ~~~GH~~G~~~l~~v~~~c~-~lGI~~lTvYaF 120 (296)
T PRK14827 89 RTEGHKMGEAVVIDIACGAI-ELGIKWLSLYAF 120 (296)
T ss_pred HhHHHHHHHHHHHHHHHHHH-HcCCCEEEEeee
Confidence 34444458888999999998 899999988877
No 283
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.45 E-value=18 Score=22.46 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=22.9
Q ss_pred ccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 49 ~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
...+..+--.+..+.....+|.+|+||.=-..
T Consensus 46 ~~si~~lA~~~~vS~aTi~Rf~kkLGf~gf~e 77 (292)
T PRK11337 46 ATALKDIAEALAVSEAMIVKVAKKLGFSGFRN 77 (292)
T ss_pred hcCHHHHHHHhCCChHHHHHHHHHcCCCCHHH
Confidence 34555555556677788899999999986553
No 284
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=28.42 E-value=1.5e+02 Score=19.87 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=22.6
Q ss_pred ccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 49 ~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
..|++.+.+- +.|+.-..-.+..|.+.+++.+
T Consensus 325 dLGV~~irLL--TNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 325 ALGIEKVRLL--TNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEec
Confidence 5677876544 4577777778888988887653
No 285
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=28.23 E-value=88 Score=15.57 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 38 AVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 38 l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
.+...+++-. ..|+..+.+.-..+...+..+.+++
T Consensus 6 ~L~~wl~~~~-~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 6 YLPEWLAHHL-ALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHH-HcCCCEEEEEECCCCccHHHHHHhC
Confidence 4555556555 6788888887776666666666654
No 286
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=28.16 E-value=1.3e+02 Score=17.47 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=38.1
Q ss_pred ceeeeeeeeeChhhhc-------cChHHHHHHHHHHHHhhccCcc--EEEEEe--------------cCCc-HHHHHHHH
Q 034515 16 ELAEVEIMIAEPKSRG-------KGLAKDAVLMMMAYAVENFGIH--VFRAKI--------------GESN-GASLRLFQ 71 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~-------~G~g~~l~~~~~~~~~~~~~~~--~i~~~~--------------~~~n-~~~~~~~~ 71 (92)
+.+.+.++.. |+.+. -.||...++.+++.+. +.|.+ .+.+.+ -..| +++.++.+
T Consensus 47 ~iGGm~H~mL-P~~~~~~~~~~~~rY~d~ai~~Ll~~m~-~~Ga~~~~l~aKifGGa~m~~~~~~~IG~rNv~~a~~~L~ 124 (163)
T PRK13494 47 NLIGMNHYVL-VKSDLVISPLQRGRYGVYAIPMLIDAML-ENGASKSNLKAKLFGGTNFMAKGTIKVGLENSEFAVNTLN 124 (163)
T ss_pred CEEEEEEEEC-CCCCCCCCCCCCcccHHHHHHHHHHHHH-HcCCCHHHeEEEEEeCcccCCcccCChHHHHHHHHHHHHH
Confidence 6778888775 75321 2378899999998887 55544 332222 2223 34566777
Q ss_pred hcCCeeec
Q 034515 72 KLGFEDIS 79 (92)
Q Consensus 72 ~~Gf~~~~ 79 (92)
+.|...+.
T Consensus 125 ~~gI~i~a 132 (163)
T PRK13494 125 KYGIPILA 132 (163)
T ss_pred HcCCcEEE
Confidence 77776665
No 287
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=28.06 E-value=52 Score=15.76 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=18.9
Q ss_pred CCcHHHHHHHHhcCCeeechhhhHHHhhhh
Q 034515 61 ESNGASLRLFQKLGFEDISYSEIFKEVSKL 90 (92)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~~~~~~~~~~~~ 90 (92)
.-..++.+..++.|...++....+...++.
T Consensus 18 ~LS~Ra~n~L~~~~I~tv~dL~~~s~~~L~ 47 (66)
T PF03118_consen 18 GLSVRAYNCLKRAGIHTVGDLVKYSEEDLL 47 (66)
T ss_dssp TSBHHHHHHHHCTT--BHHHHHCS-HHHHH
T ss_pred CCCHHHHHHHHHhCCcCHHHHHhCCHHHHH
Confidence 345788888999999988866555554443
No 288
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=28.00 E-value=1.5e+02 Score=18.03 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=36.0
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+.....+=+..+.+.++ +.+++.+.......+..+..+.++.|-+.+.
T Consensus 180 ~~~ps~~~l~~l~~~ik-~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ 227 (256)
T PF01297_consen 180 GEEPSPKDLAELIKLIK-ENKVKCIFTEPQFSSKLAEALAKETGVKVVY 227 (256)
T ss_dssp SSSS-HHHHHHHHHHHH-HTT-SEEEEETTS-THHHHHHHHCCT-EEEE
T ss_pred ccCCCHHHHHHHHHHhh-hcCCcEEEecCCCChHHHHHHHHHcCCcEEE
Confidence 55566777888888887 7899999999888888899999999876544
No 289
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=27.96 E-value=1.3e+02 Score=18.43 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=36.6
Q ss_pred eeeeeeeChhhhcc-ChHHHHHHHHHHHHhhccCccEEEEEecC-CcHHHHHHHHhcCCeeec
Q 034515 19 EVEIMIAEPKSRGK-GLAKDAVLMMMAYAVENFGIHVFRAKIGE-SNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 19 ~i~~~~v~~~~r~~-G~g~~l~~~~~~~~~~~~~~~~i~~~~~~-~n~~~~~~~~~~Gf~~~~ 79 (92)
....+++ |...++ |+-+.+-+.+.++-. +.-++...|...+ .|+.-..|.++.|-=.+.
T Consensus 76 g~kavIv-p~~~~~~g~~~~lk~~~e~~gi-~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~e 136 (217)
T PF02593_consen 76 GVKAVIV-PSESPKPGLRRQLKKQLEEFGI-EVEFPKPFCSLEENGNPQIDEFAEYFGKPKVE 136 (217)
T ss_pred CCCEEEE-ecCCCccchHHHHHHHHHhcCc-eeecCccccccCCCCChhHHHHHHHhCCceEE
Confidence 3445555 777776 665566555555432 3445566676665 678888888887765544
No 290
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=27.86 E-value=1e+02 Score=16.23 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=13.7
Q ss_pred CcHHHHHHHHh-cCCeeech
Q 034515 62 SNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+=.+|.+||++ +||+....
T Consensus 9 dl~~a~~Fy~~~lG~~~~~~ 28 (131)
T cd08343 9 DVAATAAFYTEVLGFRVSDR 28 (131)
T ss_pred CHHHHHHHHHhcCCCEEEEE
Confidence 34677889976 89987543
No 291
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.20 E-value=55 Score=17.08 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=12.0
Q ss_pred cHHHHHHHHhcCCee
Q 034515 63 NGASLRLFQKLGFED 77 (92)
Q Consensus 63 n~~~~~~~~~~Gf~~ 77 (92)
+..++++|++.|.-.
T Consensus 13 s~~tlRyYe~~GLl~ 27 (107)
T cd04777 13 TIDTVRHYIDLGLLI 27 (107)
T ss_pred CHHHHHHHHHCCCcC
Confidence 467899999999853
No 292
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=27.19 E-value=1.7e+02 Score=19.21 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=31.7
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
.+++.+....-|+|+++.+.+.+..++....+...+.+...-.+....+++.++
T Consensus 283 vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~~p~~~~le~~~~ 336 (356)
T PLN02683 283 LVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVPMPYAANLERLAL 336 (356)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcCCCccHHHHHhhC
Confidence 355555566669999999998877542223333333332223344556677666
No 293
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=27.19 E-value=1.5e+02 Score=20.97 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=24.0
Q ss_pred ccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 49 ~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
..|++.+.+.+ .|+.-..-.+..|.+.+++.+
T Consensus 348 dLGI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 348 DLGIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 66888775544 588788888899999887654
No 294
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=27.12 E-value=1.9e+02 Score=21.59 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhh-ccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 36 KDAVLMMMAYAVE-NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 36 ~~l~~~~~~~~~~-~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
.++++.+.+.+++ +.+++.-.|--...++.+..|+..+|+..+...+
T Consensus 804 ~~li~~~i~~a~~~~~~~~vgvCGE~a~dp~~i~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 804 GQLMRMAVEKGRQTRPNLKVGICGEHGGDPSSIEFCHKIGLNYVSCSP 851 (856)
T ss_pred HHHHHHHHHHHhhcCCCCEEEeCCCCcCCHHHHHHHHHCCCCEEEECh
Confidence 3556666666652 1566655555558899999999999999887544
No 295
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.96 E-value=21 Score=19.55 Aligned_cols=7 Identities=43% Similarity=0.705 Sum_probs=0.0
Q ss_pred Chhhhcc
Q 034515 26 EPKSRGK 32 (92)
Q Consensus 26 ~~~~r~~ 32 (92)
||+||++
T Consensus 24 dP~frkk 30 (121)
T PF02064_consen 24 DPDFRKK 30 (121)
T ss_dssp -------
T ss_pred ChHHHHH
Confidence 4666543
No 296
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=26.95 E-value=97 Score=20.43 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.2
Q ss_pred ecCCcHHHHHHHHhcCCeeechhhhHH
Q 034515 59 IGESNGASLRLFQKLGFEDISYSEIFK 85 (92)
Q Consensus 59 ~~~~n~~~~~~~~~~Gf~~~~~~~~~~ 85 (92)
-.|.-+.=..++++.||..+...++|.
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd 157 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWD 157 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeec
Confidence 345566678899999999999877664
No 297
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=26.78 E-value=1.1e+02 Score=16.26 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecC---CcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGE---SNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~---~n~~~~~~~~~~Gf~~~~~ 80 (92)
+..+.+.+.+.+. +.|++.+.+.+.. ..+++++.+.+.|++....
T Consensus 45 a~~~a~~~~~~~~-~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I 92 (110)
T PF00411_consen 45 AQQAAEKIAKKAK-ELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSI 92 (110)
T ss_dssp HHHHHHHHHHHHH-CTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHH-HcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEE
Confidence 3455666667776 7899988887754 3467788888888876653
No 298
>PLN02367 lactoylglutathione lyase
Probab=26.69 E-value=62 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=18.4
Q ss_pred ccEEEEEecCCcHHHHHHHHh-cCCeeech
Q 034515 52 IHVFRAKIGESNGASLRLFQK-LGFEDISY 80 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~~ 80 (92)
+.+..+.| .+=..|+.||++ +||+...+
T Consensus 76 ~~HtmlRV-kDle~Sl~FYt~vLGm~ll~r 104 (233)
T PLN02367 76 MQQTMYRI-KDPKASLDFYSRVLGMSLLKR 104 (233)
T ss_pred EEEEEEEe-CCHHHHHHHHHHhcCCEEeEE
Confidence 34444444 234679999975 89998774
No 299
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=26.63 E-value=1.2e+02 Score=19.49 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
-.|+.++..+.+.+. +.|.+.++..++.
T Consensus 136 ~~GR~~l~~~~~~ie-~~g~~VIYGDTDS 163 (323)
T cd00145 136 SFGREIIQDTIALVE-EHGARVIYGDTDS 163 (323)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEECCCc
Confidence 358888999999986 7788888777764
No 300
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=26.61 E-value=1.2e+02 Score=17.87 Aligned_cols=36 Identities=3% Similarity=-0.054 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHH
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 71 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~ 71 (92)
|+.+++..++.+. +.|++.+.+.+............
T Consensus 30 g~piI~~~l~~l~-~~Gi~~I~iv~~~~~~~i~~~l~ 65 (217)
T cd04197 30 NVPLIDYTLEFLA-LNGVEEVFVFCCSHSDQIKEYIE 65 (217)
T ss_pred CEehHHHHHHHHH-HCCCCeEEEEeCCCHHHHHHHHh
Confidence 3567888888887 67888887777654444444333
No 301
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=26.27 E-value=94 Score=15.23 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
|-.++..+.+.+. ..|.+.. +..-|....+++++.|+..
T Consensus 55 g~~~L~~l~~~~~-~~g~~v~---i~~~~~~~~~~l~~~gl~~ 93 (99)
T cd07043 55 GLGVLLGAYKRAR-AAGGRLV---LVNVSPAVRRVLELTGLDR 93 (99)
T ss_pred hHHHHHHHHHHHH-HcCCeEE---EEcCCHHHHHHHHHhCcce
Confidence 4455556666665 5565533 3344678999999999764
No 302
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.14 E-value=1.2e+02 Score=18.66 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=28.0
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|.--|...+..+++++. +.|++.+.+-+.+.
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~-~lgIk~lTvYaFS~ 58 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSL-ELGIKYLTAFSFST 58 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeH
Confidence 445566678899999999998 89999988777644
No 303
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=26.07 E-value=18 Score=15.06 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=9.4
Q ss_pred eeeeeeChhhhcc
Q 034515 20 VEIMIAEPKSRGK 32 (92)
Q Consensus 20 i~~~~v~~~~r~~ 32 (92)
+..++.+|+||..
T Consensus 10 mk~yaadpeyrkh 22 (38)
T PF02526_consen 10 MKAYAADPEYRKH 22 (38)
T ss_pred HHHHhcCHHHHHH
Confidence 4456778999964
No 304
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=26.00 E-value=1e+02 Score=15.51 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.5
Q ss_pred EEEEEecCCcHHHHHHHHhcCCeee
Q 034515 54 VFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 54 ~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
.++|.....+..+.+++++.||...
T Consensus 65 vv~C~~G~rS~~aa~~L~~~G~~~~ 89 (110)
T COG0607 65 VVYCASGVRSAAAAAALKLAGFTNV 89 (110)
T ss_pred EEEeCCCCChHHHHHHHHHcCCccc
Confidence 3455566667888999999999987
No 305
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.99 E-value=1.2e+02 Score=18.69 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.5
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|+--|-.-+..+++++. +.|++.+.+-+.+.
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lT~yaFS~ 48 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAA-NNGIEALTLYAFSS 48 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeeeh
Confidence 445566678889999999998 89999988777644
No 306
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=25.90 E-value=1.7e+02 Score=18.16 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=37.9
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
+...+.+=+..+.+.++ +.+++.+..+....+..+..+.+..|=+..
T Consensus 201 ~~eps~~~l~~l~~~ik-~~~v~~if~e~~~~~~~~~~la~~~g~~v~ 247 (282)
T cd01017 201 EVEPSPKQLAELVEFVK-KSDVKYIFFEENASSKIAETLAKETGAKLL 247 (282)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCChHHHHHHHHHcCCcEE
Confidence 44555666788888887 889999999999888888899988886554
No 307
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=25.87 E-value=97 Score=18.73 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=26.3
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
|...|..-|-..+..+++++. +.|++.+.+-+.+
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~-~~gI~~lTvYaFS 48 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCL-ELGIKYLTVYAFS 48 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH-HCT-SEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEec
Confidence 345566668888999999998 8899999887765
No 308
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=25.87 E-value=1.1e+02 Score=16.10 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+..++-..++++.++-|.+.+ ..++.+|+++|+--...
T Consensus 17 s~~~~~eWLefLve~~G~~~~--------~~~L~YY~~igWISe~V 54 (99)
T PF04659_consen 17 SEIVVFEWLEFLVERVGHNNA--------ADALDYYESIGWISEEV 54 (99)
T ss_pred HHHHHHHHHHHHHHHcccccH--------HHHHHHHHHcCCcCHHH
Confidence 444555556666645555543 56899999999876654
No 309
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=25.69 E-value=1.2e+02 Score=18.89 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=19.6
Q ss_pred CccEEEEEecCCcHHHHHHHHh-cCCeeec
Q 034515 51 GIHVFRAKIGESNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~-~Gf~~~~ 79 (92)
++..+.+.+ ++=.+|.+||.+ +||+...
T Consensus 145 ~i~Hi~l~V-~Dl~~s~~FY~~~LG~~~~~ 173 (303)
T TIGR03211 145 RLDHCLLYG-EDVAENTRFFTEVLGFRLTE 173 (303)
T ss_pred eEEEEeEEe-CCHHHHHHHHHHhcCCEEEe
Confidence 455665555 344789999965 9999754
No 310
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=25.59 E-value=1.4e+02 Score=16.93 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=26.7
Q ss_pred HHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc-CCeeec
Q 034515 40 LMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL-GFEDIS 79 (92)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~-Gf~~~~ 79 (92)
+.+.+.++ +.|++++.......+.....-.++. |.+.+.
T Consensus 5 ~~l~~~L~-~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~ 44 (172)
T PF02776_consen 5 EALAEALK-ANGVTHVFGVPGSGNLPLLDALEKSPGIRFIP 44 (172)
T ss_dssp HHHHHHHH-HTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHH-HCCCeEEEEEeChhHhHHHHHhhhhcceeeec
Confidence 45556665 7888988888888888887777777 677665
No 311
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.39 E-value=1.6e+02 Score=17.62 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=23.9
Q ss_pred HHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 40 LMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
.+++++++ ..|.+.+.++-.. ...+.++++++|+...
T Consensus 83 ~elv~~lk-~~G~~v~iiSgg~-~~lv~~ia~~lg~d~~ 119 (212)
T COG0560 83 EELVAALK-AAGAKVVIISGGF-TFLVEPIAERLGIDYV 119 (212)
T ss_pred HHHHHHHH-HCCCEEEEEcCCh-HHHHHHHHHHhCCchh
Confidence 34555555 6677765554433 3778888888888654
No 312
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=25.34 E-value=2.4e+02 Score=21.58 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+..+.+..-+..++ +.|+..|.+...+.++.-..+..++|+-....
T Consensus 352 ~~~e~~~~dl~lmK-~~g~NavR~sHyP~~~~fydlcDe~GllV~dE 397 (1021)
T PRK10340 352 VGMDRVEKDIQLMK-QHNINSVRTAHYPNDPRFYELCDIYGLFVMAE 397 (1021)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEecCCCCCHHHHHHHHHCCCEEEEC
Confidence 34567777788887 89999999988888888888888999987764
No 313
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.21 E-value=1.2e+02 Score=18.98 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=27.2
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|+--|...+..+++++. +.|++.+.+-+.+.
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~-~~gI~~lTvyaFS~ 73 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCK-DWGIKALTAYAFST 73 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 344555568899999999998 89999988777643
No 314
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=25.11 E-value=2.1e+02 Score=18.99 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=40.1
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.+.++|+.....+...|++.+.+.+. +.++..+.+... ++.-....+..||.....
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~-~~~~Ss~h~lF~--~~~~~~~l~~~G~~~r~~ 160 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAE-ENGLSSWHILFP--DEEDAAALEEAGFLSRQG 160 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHH-HcCCCcceeecC--CHHHHHHHHhCCCceecC
Confidence 34556777777788999999999987 788887665432 234556678889987653
No 315
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=25.11 E-value=1.9e+02 Score=18.43 Aligned_cols=44 Identities=5% Similarity=-0.196 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
-..+=+..+.+.++ +.+++.|..+....+..+..+.+..|-+..
T Consensus 236 ps~~~l~~l~~~ik-~~~v~~If~e~~~~~~~~~~la~e~g~~v~ 279 (311)
T PRK09545 236 PGAQRLHEIRTQLV-EQKATCVFAEPQFRPAVIESVAKGTSVRMG 279 (311)
T ss_pred CCHHHHHHHHHHHH-HcCCCEEEecCCCChHHHHHHHHhcCCeEE
Confidence 34445667788887 889999999998888888999998887653
No 316
>PF04947 Pox_VLTF3: Poxvirus Late Transcription Factor VLTF3 like ; InterPro: IPR007031 Members of this family are approximately 26 kDa, and are involved in trans-activation of late transcription [].; GO: 0046782 regulation of viral transcription
Probab=25.06 E-value=1.4e+02 Score=17.36 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=34.7
Q ss_pred hhhhccC---hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 27 PKSRGKG---LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 27 ~~~r~~G---~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
..+||+. +..++++.+.+.+. ..++. .-.-+......|.+++|+
T Consensus 21 ~~~q~k~~~~i~~~V~~~l~~~l~-k~~i~----~~~it~~~V~~~LK~l~~ 67 (171)
T PF04947_consen 21 RQFQGKQNTTIPDEVYEELRKELK-KYNID----ISDITKNHVREFLKKLGY 67 (171)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHH-HcCCC----HHHcCHHHHHHHHHHcCC
Confidence 5788998 99999999999997 66766 233445667889999996
No 317
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=24.81 E-value=1.3e+02 Score=16.42 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=16.1
Q ss_pred EEEEEecCCcHHHHHHHH-hcCCeeec
Q 034515 54 VFRAKIGESNGASLRLFQ-KLGFEDIS 79 (92)
Q Consensus 54 ~i~~~~~~~n~~~~~~~~-~~Gf~~~~ 79 (92)
.+.+.+ ++-.+|.+||+ -+||+...
T Consensus 7 Hv~i~V-~Dle~s~~FY~~~LG~~~~~ 32 (144)
T cd07239 7 HVVLNS-PDVDKTVAFYEDVLGFRVSD 32 (144)
T ss_pred EEEEEC-CCHHHHHHHHHhcCCCEEEE
Confidence 343333 45578889995 48988754
No 318
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proved by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=24.78 E-value=1.4e+02 Score=19.56 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
-.|+.++..+.+++. +.|.+.++..++.
T Consensus 113 ~~GR~~L~~~~~~~e-~~g~~VIygDTDS 140 (347)
T cd05538 113 RLGRELLKLMIRWLR-RRGATPVEVDTDG 140 (347)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEEcCCe
Confidence 357888888888886 7898888777653
No 319
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=24.77 E-value=97 Score=20.49 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=21.1
Q ss_pred cCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 50 FGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 50 ~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.|+..+...+.....+...++.++||+..+.
T Consensus 21 ~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~ 51 (363)
T COG3185 21 DGFEFVEFAVPDPQEALGALLGQLGFTAVAK 51 (363)
T ss_pred CceeEEEEecCCHHHHHHHHHHHhCcccccc
Confidence 4666666655544466777888888887774
No 320
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=24.74 E-value=1.1e+02 Score=15.48 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
-.++..+.+.++ +.|.+.. +..-++...++++..|+...
T Consensus 61 l~~L~~~~~~~~-~~~~~~~---l~~~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 61 LGVLLGRYKQVR-RVGGQLV---LVSVSPRVARLLDITGLLRI 99 (108)
T ss_pred HHHHHHHHHHHH-hcCCEEE---EEeCCHHHHHHHHHhChhhe
Confidence 344555555555 4565544 33347888899999888764
No 321
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=24.72 E-value=1.8e+02 Score=17.93 Aligned_cols=24 Identities=13% Similarity=-0.046 Sum_probs=18.8
Q ss_pred EEecCCcHHHHHHHHhcCCeeech
Q 034515 57 AKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 57 ~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
..+.+.+..+....+++|......
T Consensus 51 i~~VptS~~t~~~a~~~Gipl~~l 74 (228)
T PRK13978 51 ITGVCTSNKIAFLAKELGIKICEI 74 (228)
T ss_pred EEEEeCcHHHHHHHHHcCCcEech
Confidence 345578888999999999987763
No 322
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.67 E-value=1.3e+02 Score=16.47 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=27.5
Q ss_pred eeeeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEec
Q 034515 18 AEVEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG 60 (92)
Q Consensus 18 ~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~ 60 (92)
-+++..-| ++.||.....+.++.+.....+....+.+.+.+.
T Consensus 7 kyLGs~eV-~~~~G~~~~~~Am~kik~~~~~~~k~~~V~L~IS 48 (127)
T cd01274 7 HYLGSLEI-GELEGTDSTHAAMTKIKESIIDWETIPRVTLDLT 48 (127)
T ss_pred EccceEEc-cCCCCcHHHHHHHHHHHHhhhccCCCCEEEEEEe
Confidence 36788887 7889888888777777554431123456666664
No 323
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=24.57 E-value=1.7e+02 Score=20.07 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=22.5
Q ss_pred ccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 49 ~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
.+|++.+.+- +.|+.-..-.+.+|.+.+++.+
T Consensus 378 dLGI~~irLL--TNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 378 DLGVRTMRLM--TNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HcCCCEEEEC--CCCHHHHHHHhhCCCEEEEEec
Confidence 5678876554 4477777778888988876553
No 324
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=24.56 E-value=1.4e+02 Score=18.53 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.7
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|.--|-.-+..+++++. +.|++.+.+-+.+.
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~-~lgI~~vTvYaFS~ 63 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASL-EYGLKNISLYAFST 63 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 445566668899999999998 89999998877644
No 325
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.56 E-value=1.6e+02 Score=18.20 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=33.3
Q ss_pred hhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+++.-+..+-...+.++++ +.|+..+ +.+-+..+..|.+++|.....
T Consensus 48 ~~~~el~~e~~~~L~~~~~-~~gi~f~---stpfd~~s~d~l~~~~~~~~K 94 (241)
T PF03102_consen 48 FKKLELSEEQHKELFEYCK-ELGIDFF---STPFDEESVDFLEELGVPAYK 94 (241)
T ss_dssp HHHHSS-HHHHHHHHHHHH-HTT-EEE---EEE-SHHHHHHHHHHT-SEEE
T ss_pred HHHhcCCHHHHHHHHHHHH-HcCCEEE---ECCCCHHHHHHHHHcCCCEEE
Confidence 4455677778888999998 8898866 555688899999998866655
No 326
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=24.34 E-value=1.6e+02 Score=17.22 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
|||++=.....+. + +.|++.+.. ..+ +.++..-.++.||+......
T Consensus 11 GyGsQG~a~AlNL-r-DSG~~V~Vg-lr~-~s~s~~~A~~~Gf~v~~~~e 56 (165)
T PF07991_consen 11 GYGSQGHAHALNL-R-DSGVNVIVG-LRE-GSASWEKAKADGFEVMSVAE 56 (165)
T ss_dssp S-SHHHHHHHHHH-H-HCC-EEEEE-E-T-TCHHHHHHHHTT-ECCEHHH
T ss_pred CCChHHHHHHHHH-H-hCCCCEEEE-ecC-CCcCHHHHHHCCCeeccHHH
Confidence 5666544444443 4 668865433 333 33689999999999886443
No 327
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.34 E-value=2.7e+02 Score=19.83 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
-+|.++...+++.+. ..|++.+...+.-.-.++..+.+++|...
T Consensus 244 ~~Gieia~e~~~~L~-~~Gv~GiHfYTlN~e~~v~~ILe~lgl~~ 287 (565)
T PLN02540 244 AYGIHLGTEMCKKIL-AHGIKGLHLYTLNLEKSALAILMNLGLID 287 (565)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEECccCChHHHHHHHHHcCCCC
Confidence 367788888888887 66788888888888888999999999753
No 328
>PRK10638 glutaredoxin 3; Provisional
Probab=24.33 E-value=1e+02 Score=14.99 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=24.1
Q ss_pred HHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 40 LMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
..+..++. +.+++.-...+..+......+.+..|+..+.
T Consensus 16 ~~a~~~L~-~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP 54 (83)
T PRK10638 16 HRAKALLN-SKGVSFQEIPIDGDAAKREEMIKRSGRTTVP 54 (83)
T ss_pred HHHHHHHH-HcCCCcEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 34445554 6677776667766555556666666776554
No 329
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.32 E-value=1.6e+02 Score=18.16 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=29.6
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
|.|-|+-+...+..... ...-. ......++...+..+.+++|+....
T Consensus 25 GlGTGST~~~fI~~Lg~-~~~~e-~~i~~V~TS~~t~~l~~~~GI~v~~ 71 (227)
T COG0120 25 GLGTGSTAAYFIEALGR-RVKGE-LDIGGVPTSFQTEELARELGIPVSS 71 (227)
T ss_pred EEcCcHHHHHHHHHHHH-hhccC-ccEEEEeCCHHHHHHHHHcCCeecC
Confidence 55666666666555542 11111 3444667788999999999996654
No 330
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=24.31 E-value=1.2e+02 Score=15.69 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=12.8
Q ss_pred CcHHHHHHHHh-cCCeeec
Q 034515 62 SNGASLRLFQK-LGFEDIS 79 (92)
Q Consensus 62 ~n~~~~~~~~~-~Gf~~~~ 79 (92)
+=..+.+||++ +||+...
T Consensus 11 d~~~~~~FY~~vLG~~~~~ 29 (121)
T cd07244 11 DLERSVAFYVDLLGFKLHV 29 (121)
T ss_pred CHHHHHHHHHHhcCCEEEE
Confidence 34677888875 8887765
No 331
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=24.26 E-value=1.4e+02 Score=18.19 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=27.5
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|.--|...+..+++++. +.|++.+.+-+.+.
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~-~~gI~~lTvyaFS~ 55 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCL-ELGVKEVTLYAFST 55 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHH-HcCCCEEEEEeech
Confidence 445566678899999999998 88999988776543
No 332
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=24.25 E-value=2.7e+02 Score=19.78 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 37 DAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 37 ~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
++++.+.+.++ ..|.+.-.|--...|+.+..++-.+|+......+
T Consensus 483 ~~i~~v~~~a~-~~g~~v~vCGe~A~dp~~~~lLlglGi~~lSm~p 527 (575)
T PRK11177 483 NLIKQVIDASH-AEGKWTGMCGELAGDERATLLLLGMGLDEFSMSA 527 (575)
T ss_pred HHHHHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHCCCCeEEECH
Confidence 46777777776 7888888888889999999999999999988544
No 333
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=24.02 E-value=1.4e+02 Score=16.31 Aligned_cols=48 Identities=8% Similarity=0.177 Sum_probs=25.7
Q ss_pred eeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHh
Q 034515 21 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 72 (92)
Q Consensus 21 ~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~ 72 (92)
..+++.|+.-.+|...++++.+.+..+ .+........+. ..+..+|+.
T Consensus 3 tl~lIKPda~~~~~~g~Ii~~l~~~Gf---~I~~~k~~~lt~-e~a~~~y~~ 50 (135)
T PF00334_consen 3 TLALIKPDAVARGHAGEIIDRLEEAGF---EIVAMKMVQLTR-EEAREFYEE 50 (135)
T ss_dssp EEEEE-HHHHHTT-HHHHHHHHHHHT----EEEEEEEEEETH-HHHHHHTGG
T ss_pred EEEEEChhHhhccchHHHHHHHHHcCC---eeeehhhhhhhH-HHHheEEEe
Confidence 346778998888877777777765544 222222222222 456667754
No 334
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=23.85 E-value=1.4e+02 Score=19.76 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.7
Q ss_pred ccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 49 ~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
.+|++.+.+.+ |+.-..-.+..|.+.+++.
T Consensus 333 ~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 333 DLGVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HcCCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 67888887766 5556666778888877654
No 335
>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs. In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.
Probab=23.81 E-value=1.1e+02 Score=15.15 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=30.4
Q ss_pred eeeeeeeeeChhhhccChHH--HHHHHHHHHHhhccCccEEEEEecC
Q 034515 17 LAEVEIMIAEPKSRGKGLAK--DAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~--~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
...+...++.+.|.|+-.-. +++..++.... ..++.-+.+.+.+
T Consensus 27 ~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i-~~~iHAlsi~t~t 72 (76)
T PF01722_consen 27 GSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEI-KDGIHALSIKTYT 72 (76)
T ss_dssp SSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHH-GCTCSEEEEEEE-
T ss_pred CceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHh-cCCceEEEEEcCC
Confidence 56788889999999996644 66666666555 4458877776644
No 336
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=23.81 E-value=1.2e+02 Score=17.78 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=15.3
Q ss_pred CCcHHHHHHHH-hcCCeeech
Q 034515 61 ESNGASLRLFQ-KLGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~~-~~Gf~~~~~ 80 (92)
.+=..|+.||+ .+||+...+
T Consensus 36 ~Dle~Si~FY~~vLG~~~~~r 56 (185)
T PLN03042 36 KDPKASLDFYSRVLGMSLLKR 56 (185)
T ss_pred CCHHHHHHHHHhhcCCEEEEE
Confidence 34478899997 589998765
No 337
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.79 E-value=1.2e+02 Score=18.03 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.3
Q ss_pred EEecCCcHHHHHHHHhcCCeeec
Q 034515 57 AKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 57 ~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
..+...|..+.++|+++|+..+-
T Consensus 43 ~~~nv~N~~s~~~~~~~G~~~i~ 65 (233)
T PF01136_consen 43 YSLNVFNSESARFLKELGASRIT 65 (233)
T ss_pred cCccCCCHHHHHHHHHcCCCEEE
Confidence 34557799999999999988765
No 338
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=23.77 E-value=1.7e+02 Score=17.27 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=27.7
Q ss_pred hhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 28 KSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 28 ~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
++|.-|+|.+++. .+|++.+.+-+ .|+.-..-.+..|-+.++..
T Consensus 123 d~R~yGiGAQIL~--------dLGV~~~rLLt--n~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 123 DERDFSLCADILE--------DLGVKKVRLLT--NNPKKIEILKKAGINIVERV 166 (191)
T ss_pred cceehhHHHHHHH--------HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEe
Confidence 3677777765543 56888775544 35555666667777766544
No 339
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.76 E-value=96 Score=15.68 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=12.7
Q ss_pred CcHHHHHHHHhc-CCeeech
Q 034515 62 SNGASLRLFQKL-GFEDISY 80 (92)
Q Consensus 62 ~n~~~~~~~~~~-Gf~~~~~ 80 (92)
+=.+|.+||++. ||+....
T Consensus 8 d~~~a~~FY~~~lg~~~~~~ 27 (121)
T cd07251 8 DLARSRAFYEALLGWKPSAD 27 (121)
T ss_pred CHHHHHHHHHHhcCceeccc
Confidence 336678888755 8877654
No 340
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=23.74 E-value=1.3e+02 Score=16.81 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=27.3
Q ss_pred cCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 50 FGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 50 ~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
.++.++-+.+.+.|+....+.+.-||.......
T Consensus 122 mnvdrlgiyinpnneevfalvrargfdkdalse 154 (192)
T PRK12303 122 MNVDRLGIYINPNNEEVFALVRARGFDKDALSE 154 (192)
T ss_pred hcchheeeeeCCCcHHHHHHHHHhcCCHHHHhh
Confidence 477788888999999999999999998766433
No 341
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.62 E-value=1.8e+02 Score=17.57 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=40.0
Q ss_pred ceeeeeeeeeChhhh-----ccChHHHHHHHHHHHHhhccCcc--EEEEEe-------------cCCc-HHHHHHHHhcC
Q 034515 16 ELAEVEIMIAEPKSR-----GKGLAKDAVLMMMAYAVENFGIH--VFRAKI-------------GESN-GASLRLFQKLG 74 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r-----~~G~g~~l~~~~~~~~~~~~~~~--~i~~~~-------------~~~n-~~~~~~~~~~G 74 (92)
+.+.|.++.. |+-. .-.||...+..+++.+. +.|.+ ++.+.+ -..| .++.++.++.|
T Consensus 51 ~IGGM~H~mL-P~~~~~~~~~~rYgd~Ai~~Li~~m~-~~Ga~~~~L~AKifGGA~M~~~~~~IG~rNie~a~~~L~~~G 128 (199)
T PRK13491 51 GVGGMNHFLL-PSADVEDAQHLRYGSHAMELLINALL-KLGAARQRIEAKIFGGAMMTPQLGAIGQANAAFARRYLRDEG 128 (199)
T ss_pred CEEEEEEEEC-CCCCCCCCCCcccHHHHHHHHHHHHH-HcCCCHHHeEEEEEeCcccccccccHHHHHHHHHHHHHHHcC
Confidence 6777777775 7432 13489999999999887 55654 332222 2223 45577778888
Q ss_pred Ceeech
Q 034515 75 FEDISY 80 (92)
Q Consensus 75 f~~~~~ 80 (92)
...++.
T Consensus 129 I~ivae 134 (199)
T PRK13491 129 IRCTAH 134 (199)
T ss_pred CcEEEE
Confidence 777663
No 342
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=23.58 E-value=1.4e+02 Score=16.31 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
|+-+++.+++.+. +.+++.+.+.+.. ......+.+.+.+.+..
T Consensus 23 g~~li~~~l~~l~-~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 23 GKPLIERVLEALR-EAGVDDIVVVTGE--EEIYEYLERYGIKVVVD 65 (160)
T ss_dssp TEEHHHHHHHHHH-HHTESEEEEEEST--HHHHHHHTTTTSEEEE-
T ss_pred CccHHHHHHHHhh-ccCCceEEEecCh--HHHHHHHhccCceEEEe
Confidence 5567778888876 6678888877766 33444556667666543
No 343
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=23.56 E-value=1.2e+02 Score=20.06 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=25.5
Q ss_pred hccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcC
Q 034515 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLG 74 (92)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~G 74 (92)
.|-|||.+++.+.++.+. ..+-..+..+.... ......|++.|
T Consensus 10 pGDGIGpEv~~~a~kVl~-a~~~~~~~~e~~~~-~~G~~~~~~~G 52 (348)
T COG0473 10 PGDGIGPEVMAAALKVLE-AAAEFGLDFEFEEA-EVGGEAYDKHG 52 (348)
T ss_pred CCCCCCHHHHHHHHHHHH-HhhhcCCceEEEEe-hhhHHHHHHcC
Confidence 388999999999998876 22211122222222 23356666666
No 344
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=23.40 E-value=1.9e+02 Score=17.74 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHh
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 72 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~ 72 (92)
|.|+.-+...++ ++.+ ..+..+..++|+-.-.||++
T Consensus 14 G~GKSTLa~~La---~~l~-~~~~~E~vednp~L~~FY~d 49 (216)
T COG1428 14 GAGKSTLAQALA---EHLG-FKVFYELVEDNPFLDLFYED 49 (216)
T ss_pred ccCHHHHHHHHH---HHhC-CceeeecccCChHHHHHHHh
Confidence 566654444433 2456 45688899999999999985
No 345
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=23.40 E-value=76 Score=19.46 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCeeechhhhHHHhhh
Q 034515 64 GASLRLFQKLGFEDISYSEIFKEVSK 89 (92)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~~~~~~~~~~ 89 (92)
.-+..+.+++||....+...|.-+.+
T Consensus 19 Tvak~lA~~Lg~~yldTGamYRa~a~ 44 (222)
T COG0283 19 TVAKILAEKLGFHYLDTGAMYRAVAL 44 (222)
T ss_pred HHHHHHHHHhCCCeecccHHHHHHHH
Confidence 45677778888888877666655443
No 346
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=23.26 E-value=1.7e+02 Score=17.31 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=28.6
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechh
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
+++|.-|+|.+++. ..|++.+.+-. .|+.-..-....|.+.++..
T Consensus 125 ~d~R~yGiGAQIL~--------dLGV~~mrLLt--n~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 125 ADERDYTLAADMLK--------ALGVKKVRLLT--NNPKKVEALTEAGINIVERV 169 (197)
T ss_pred ccceehhHHHHHHH--------HcCCCEEEECC--CCHHHHHHHHhCCCEEEEEe
Confidence 34677777755543 56888776544 35555556667888877644
No 347
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=23.24 E-value=1.3e+02 Score=19.46 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=25.8
Q ss_pred eeeeeChhhhccChHHHHHHHHHHHHhhccCcc
Q 034515 21 EIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIH 53 (92)
Q Consensus 21 ~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~ 53 (92)
..+.|+..++.-|+|.++...+.+.++..+..+
T Consensus 290 ~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAP 322 (359)
T KOG0524|consen 290 RLVTVEEGWPQFGIGAEICAQIMENAFDYLDAP 322 (359)
T ss_pred eEEEEeccccccchhHHHHHHHHHHHHhhhcch
Confidence 356777888999999999999998887554444
No 348
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=23.20 E-value=1.4e+02 Score=19.47 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=27.8
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|+-.|.+.+..+++++. +.|++.+.+-....
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~-~lGIk~lTlYAFSt 74 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICI-KLKIKILSVFSFSL 74 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 444566678999999999998 89999988777643
No 349
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=23.16 E-value=1.5e+02 Score=19.38 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
-+|++++..+.+.+. +.|++.++..++.
T Consensus 129 ~~GR~~L~~~~~~~e-~~g~~VIygDTDS 156 (352)
T cd05531 129 AYGRKILLRAKEIAE-EMGFRVLHGIVDS 156 (352)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEcccc
Confidence 368888999888886 7899988877764
No 350
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=23.16 E-value=82 Score=14.15 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.1
Q ss_pred HHHHHHhcCCeeech
Q 034515 66 SLRLFQKLGFEDISY 80 (92)
Q Consensus 66 ~~~~~~~~Gf~~~~~ 80 (92)
-.++.+++||+.+..
T Consensus 23 k~r~L~~~G~~Vi~I 37 (58)
T PF08373_consen 23 KHRHLKALGYKVISI 37 (58)
T ss_pred HHHHHHHCCCEEEEe
Confidence 367889999999864
No 351
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.10 E-value=1.1e+02 Score=19.26 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred HHHHHHHhhccCccEEEEEecCCcHHHHH
Q 034515 40 LMMMAYAVENFGIHVFRAKIGESNGASLR 68 (92)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~ 68 (92)
.+=+..++ +.|+..+.+.+++++.+..+
T Consensus 21 ~erl~~AK-~~GFDFvEmSvDEsDeRLaR 48 (287)
T COG3623 21 LERLALAK-ELGFDFVEMSVDESDERLAR 48 (287)
T ss_pred HHHHHHHH-HcCCCeEEEeccchHHHHHh
Confidence 34455665 88999999999999876543
No 352
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.09 E-value=1.5e+02 Score=18.55 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=27.3
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|.--|-..+..+++++. +.|++.+.+-+.+.
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~-~~GIk~lTvYaFS~ 77 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTAL-HLGIEVLTLFAFST 77 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEeeh
Confidence 344555568899999999998 88999998877644
No 353
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=23.07 E-value=90 Score=14.18 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=11.2
Q ss_pred CCcHHHHHHHHhcCCeeec
Q 034515 61 ESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~ 79 (92)
..|..+.++.+++|.-.++
T Consensus 2 ~~N~~A~~~A~~~~lp~~~ 20 (56)
T PF13263_consen 2 EANRRAAELAEKYGLPFTG 20 (56)
T ss_dssp ----HHHHHHHHTT--EEE
T ss_pred cHHHHHHHHHHHcCCCeEe
Confidence 3588889999999887776
No 354
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=23.05 E-value=52 Score=19.31 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=15.2
Q ss_pred eeeeChhhhccChHHHHHHHH
Q 034515 22 IMIAEPKSRGKGLAKDAVLMM 42 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~ 42 (92)
.+++||++.|.-|=+.+.+.+
T Consensus 51 IIfTDpD~~GekIRk~i~~~v 71 (174)
T TIGR00334 51 IILTDPDFPGEKIRKKIEQHL 71 (174)
T ss_pred EEEeCCCCchHHHHHHHHHHC
Confidence 456689999887777666653
No 355
>COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=22.93 E-value=36 Score=18.49 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCeeechh--hhHHHhhh
Q 034515 65 ASLRLFQKLGFEDISYS--EIFKEVSK 89 (92)
Q Consensus 65 ~~~~~~~~~Gf~~~~~~--~~~~~~~~ 89 (92)
.|..++++.||+.+.+. ..++++|+
T Consensus 11 ~A~~~L~~~G~~il~rN~r~r~GEIDl 37 (114)
T COG0792 11 LAARFLESKGLRILARNWRCRYGEIDL 37 (114)
T ss_pred HHHHHHHHcCcchhhhhccCCCCceEE
Confidence 46677777788777742 23455543
No 356
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=22.93 E-value=13 Score=17.81 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=9.3
Q ss_pred eeeeeeChhhhcc
Q 034515 20 VEIMIAEPKSRGK 32 (92)
Q Consensus 20 i~~~~v~~~~r~~ 32 (92)
|+..++|++||.+
T Consensus 6 IgrAv~D~~FRqq 18 (61)
T PF14407_consen 6 IGRAVTDEAFRQQ 18 (61)
T ss_pred HHHHHcCHHHHHH
Confidence 5666778888854
No 357
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=22.89 E-value=1.5e+02 Score=16.33 Aligned_cols=47 Identities=11% Similarity=0.246 Sum_probs=27.5
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEec-CCcHHHHHHHHhc
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIG-ESNGASLRLFQKL 73 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~-~~n~~~~~~~~~~ 73 (92)
..++.|+.-.+|+..++++.+.+. |+..+.+... .+...+..||...
T Consensus 4 l~lIKPda~~~~~~g~Ii~~i~~~-----gf~I~~~k~~~lt~~~a~~~y~~~ 51 (134)
T cd04412 4 VCIIKPHAVSHGLLGEILQQILDE-----GFEITALQMFNLTRANAEEFLEVY 51 (134)
T ss_pred EEEECchHhhcCchHHHHHHHHHC-----CCEEEEeEeecCCHHHHHHHHHHH
Confidence 355678888888777777666543 3333333322 3445567777643
No 358
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=22.75 E-value=2.3e+02 Score=18.51 Aligned_cols=52 Identities=10% Similarity=0.208 Sum_probs=33.9
Q ss_pred eeeeeeChhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHH-HHHHHhcCCeeech
Q 034515 20 VEIMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGAS-LRLFQKLGFEDISY 80 (92)
Q Consensus 20 i~~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~-~~~~~~~Gf~~~~~ 80 (92)
.+.+++||-+ .|+...+++.+.+ . -..++.++.+...+- .+.+.+ ||+....
T Consensus 289 ~D~v~lDPPR--~G~~~~~l~~l~~-~-----~~ivyvSC~p~tlarDl~~L~~-gY~l~~v 341 (362)
T PRK05031 289 FSTIFVDPPR--AGLDDETLKLVQA-Y-----ERILYISCNPETLCENLETLSQ-THKVERF 341 (362)
T ss_pred CCEEEECCCC--CCCcHHHHHHHHc-c-----CCEEEEEeCHHHHHHHHHHHcC-CcEEEEE
Confidence 5788999984 6888888777754 1 246777787744221 344444 8887763
No 359
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=22.75 E-value=1.2e+02 Score=15.35 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
|-.++..+.+.+. +.|.+-..+ .-++...+.+++.|+...
T Consensus 56 gi~~L~~~~~~~~-~~g~~l~l~---~~~~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 56 GLGVILGRYKKIK-NEGGEVIVC---NVSPAVKRLFELSGLFKI 95 (106)
T ss_pred HHHHHHHHHHHHH-HcCCEEEEE---eCCHHHHHHHHHhCCceE
Confidence 3344555566665 566655544 347889999999998754
No 360
>PHA02554 13 neck protein; Provisional
Probab=22.58 E-value=1.5e+02 Score=19.19 Aligned_cols=36 Identities=14% Similarity=0.395 Sum_probs=24.6
Q ss_pred HHHHHHHhhccCccEEEEEecCCc-----HHHHHHHHhcCC
Q 034515 40 LMMMAYAVENFGIHVFRAKIGESN-----GASLRLFQKLGF 75 (92)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~~~n-----~~~~~~~~~~Gf 75 (92)
+++.+++..++|.+.+..++.++. ..|+.+|...-|
T Consensus 9 ~eLkD~iLRrLGAPii~Ievt~dQi~D~I~rALely~EYH~ 49 (311)
T PHA02554 9 RELKDYILRRLGAPIINVEVTEDQIYDCIQRALELYGEYHY 49 (311)
T ss_pred HHHHHHHHHhcCCCeeEeecCHHHHHHHHHHHHHHHHHHhc
Confidence 345566555778898888887775 567777766444
No 361
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.51 E-value=2.1e+02 Score=17.95 Aligned_cols=37 Identities=8% Similarity=0.224 Sum_probs=25.4
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHh
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQK 72 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~ 72 (92)
+|+|.+-+..+.+++. +.|+..+ +...+..+..+..+
T Consensus 73 ~G~g~~gl~~l~~~~~-~~Gl~~~---te~~d~~~~~~l~~ 109 (266)
T PRK13398 73 QGLGEEGLKILKEVGD-KYNLPVV---TEVMDTRDVEEVAD 109 (266)
T ss_pred CCcHHHHHHHHHHHHH-HcCCCEE---EeeCChhhHHHHHH
Confidence 4566888888888876 8899877 44445556556554
No 362
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=22.43 E-value=1.2e+02 Score=15.27 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
|-.++..+.+.+. ..|.+-..+ .-+....+.+++.|+..
T Consensus 56 gl~~L~~l~~~~~-~~g~~l~l~---~~~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAE-AVGGQFVLT---GISPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHH-HcCCEEEEE---CCCHHHHHHHHHhCchh
Confidence 4455566666665 556555433 34777888888888765
No 363
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=1.7e+02 Score=19.16 Aligned_cols=24 Identities=13% Similarity=0.405 Sum_probs=19.3
Q ss_pred EEEEecCCcHHHHHHHHhcCCeee
Q 034515 55 FRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 55 i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
+...+...|....+||.++|.+.+
T Consensus 118 ~S~q~~v~N~~~~~f~~~~G~~rv 141 (347)
T COG0826 118 VSTQANVTNAETAKFWKELGAKRV 141 (347)
T ss_pred EeeeEecCCHHHHHHHHHcCCEEE
Confidence 456677889999999999997654
No 364
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.30 E-value=1.6e+02 Score=18.32 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.2
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|.--|-.-+..+++++. +.|++.+.+-+.+.
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~-~~GI~~lTvYaFS~ 64 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAP-DLGIGTLTLYAFSS 64 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEech
Confidence 344556668889999999998 89999988777643
No 365
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.27 E-value=1.7e+02 Score=18.09 Aligned_cols=35 Identities=6% Similarity=0.105 Sum_probs=27.1
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
|...|+--|-..+..+++++. +.|++.+..-+.+.
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~-~~gI~~lTvyaFS~ 59 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCA-NHKLECLTLYAFST 59 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHH-HcCCCEEEEeecch
Confidence 334455568889999999998 89999988777643
No 366
>PRK15482 transcriptional regulator MurR; Provisional
Probab=22.21 E-value=27 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=19.9
Q ss_pred CccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 51 GIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
.+..+--.+..+.....+|.+|+||.=-..
T Consensus 36 si~elA~~~~vS~aTv~Rf~kkLGf~Gf~e 65 (285)
T PRK15482 36 SSRKMAKQLGISQSSIVKFAQKLGAQGFTE 65 (285)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhCCCCHHH
Confidence 344444445556677799999999975553
No 367
>PRK06724 hypothetical protein; Provisional
Probab=22.17 E-value=1.5e+02 Score=15.97 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=17.2
Q ss_pred CccEEEEEecCCcHHHHHHHHh----cCCeee
Q 034515 51 GIHVFRAKIGESNGASLRLFQK----LGFEDI 78 (92)
Q Consensus 51 ~~~~i~~~~~~~n~~~~~~~~~----~Gf~~~ 78 (92)
++..+.+.+ .+=.+|.+||++ +||+..
T Consensus 7 ~i~Hv~l~V-~Dle~s~~FY~~vlg~lg~~~~ 37 (128)
T PRK06724 7 GIHHIEFWV-ANLEESISFYDMLFSIIGWRKL 37 (128)
T ss_pred ccCEEEEEe-CCHHHHHHHHHHHHhhCCcEEe
Confidence 455655555 344677788887 577764
No 368
>CHL00041 rps11 ribosomal protein S11
Probab=22.14 E-value=1.5e+02 Score=16.06 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEec---CCcHHHHHHHHhcCCeeech
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~---~~n~~~~~~~~~~Gf~~~~~ 80 (92)
+..+.+.+.+.+. +.|++.+...+. +..+.+++-+++.|.+....
T Consensus 58 a~~~a~~~~~~~~-~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I 105 (116)
T CHL00041 58 AQTAAENAIRTVI-DQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSI 105 (116)
T ss_pred HHHHHHHHHHHHH-HcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEE
Confidence 4455666667776 789998888774 45577788888888887653
No 369
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.12 E-value=2e+02 Score=17.67 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=38.6
Q ss_pred hccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.+.....+=+..+.+.++ +.+++.+..+....+..+..+.+..|-....
T Consensus 197 ~~~eps~~~l~~l~~~ik-~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ 245 (266)
T cd01018 197 EGKEPSPADLKRLIDLAK-EKGVRVVFVQPQFSTKSAEAIAREIGAKVVT 245 (266)
T ss_pred CCCCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCcHHHHHHHHHcCCeEEE
Confidence 344555566777788887 8899999999888888888999999976654
No 370
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.07 E-value=1.9e+02 Score=18.41 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=27.7
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHH--------HHHhcCCeeec
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLR--------LFQKLGFEDIS 79 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~--------~~~~~Gf~~~~ 79 (92)
|+-++.++.+.+.+.+. +.|+.--.+.+...|..+-. ..+++|+...-
T Consensus 5 Gk~~a~~i~~~~~~~v~-~lg~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~ 60 (279)
T PRK14178 5 GKAVSEKRLELLKEEII-ESGLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVG 60 (279)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEE
Confidence 45567777777777765 44554434445555544444 44455877654
No 371
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=22.00 E-value=1.8e+02 Score=16.97 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
|+-+++..++.+. +.++..+.+.+..+...-.....+.+.+.
T Consensus 25 gkpli~~~i~~l~-~~~i~~i~iv~~~~~~~i~~~~~~~~~~~ 66 (229)
T cd02540 25 GKPMLEHVLDAAR-ALGPDRIVVVVGHGAEQVKKALANPNVEF 66 (229)
T ss_pred CccHHHHHHHHHH-hCCCCeEEEEECCCHHHHHHHhCCCCcEE
Confidence 5677888888776 66777777766655555555555555543
No 372
>PRK10702 endonuclease III; Provisional
Probab=21.99 E-value=1.9e+02 Score=17.37 Aligned_cols=40 Identities=10% Similarity=0.181 Sum_probs=29.3
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
.|+|......++-+++ .. + ..+-+....++..++|+....
T Consensus 115 pGVG~ktA~~ill~a~-~~--~-----~~~VDt~v~Rv~~r~g~~~~~ 154 (211)
T PRK10702 115 PGVGRKTANVVLNTAF-GW--P-----TIAVDTHIFRVCNRTQFAPGK 154 (211)
T ss_pred CcccHHHHHHHHHHHc-CC--C-----cccccchHHHHHHHhCCCCCC
Confidence 4899999999988887 32 2 223356689999999997543
No 373
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.99 E-value=1.8e+02 Score=18.58 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=27.3
Q ss_pred ccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHH--------HhcCCeeec
Q 034515 31 GKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLF--------QKLGFEDIS 79 (92)
Q Consensus 31 ~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~--------~~~Gf~~~~ 79 (92)
|+-+++++.+.+.+.+. .++..--.+.+...|..+-..| +++|+...-
T Consensus 5 Gk~iA~~i~~~~k~~v~-~l~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~ 60 (287)
T PRK14181 5 GAPAAEHILATIKENIS-ASSTAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKA 60 (287)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 55677888888887776 4454433344444444444444 445766554
No 374
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=21.96 E-value=2.4e+02 Score=19.91 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=35.4
Q ss_pred cChHHHHHHHHHHHHhhccC-ccEEEEEecCCcHHHHHHHHhcCCeee
Q 034515 32 KGLAKDAVLMMMAYAVENFG-IHVFRAKIGESNGASLRLFQKLGFEDI 78 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~-~~~i~~~~~~~n~~~~~~~~~~Gf~~~ 78 (92)
+.+|.+++-++++.+. ..| ++.+...+...-.+...+.+++|.-..
T Consensus 255 r~~Gvel~vemc~kll-~~g~v~~lHfyTlNlEksv~~IL~~lgll~~ 301 (590)
T KOG0564|consen 255 RNYGVELIVEMCRKLL-DSGVVPGLHFYTLNLEKSVAAILKRLGLLDE 301 (590)
T ss_pred HHHhHHHHHHHHHHHH-hcCccceeEEEEecHHHHHHHHHHhcCcccc
Confidence 3467777777777776 445 788888787777888999999998766
No 375
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=21.90 E-value=1.7e+02 Score=16.57 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=19.8
Q ss_pred HHHHHhhccCccEEEEEecCCcHHHHHHHHhc-CCeeec
Q 034515 42 MMAYAVENFGIHVFRAKIGESNGASLRLFQKL-GFEDIS 79 (92)
Q Consensus 42 ~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~-Gf~~~~ 79 (92)
+.+.++ +.|++++.......+.....-..+. |++.+.
T Consensus 3 l~~~L~-~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~ 40 (162)
T cd07038 3 LLERLK-QLGVKHVFGVPGDYNLPLLDAIEENPGLRWVG 40 (162)
T ss_pred HHHHHH-HcCCCEEEEeCCccHHHHHHHHhhcCCceEEe
Confidence 344444 6677777766666655544444332 454443
No 376
>COG3351 FlaD Putative archaeal flagellar protein D/E [Cell motility and secretion]
Probab=21.87 E-value=1.7e+02 Score=17.74 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+--++-..+.++..+.|.++. ...+.+|++.||--..
T Consensus 107 si~v~lkWLeFLl~r~G~~n~--------~dvldyYe~iGWIs~~ 143 (214)
T COG3351 107 SIMVALKWLEFLLDRGGPKNT--------LDVLDYYESIGWISEK 143 (214)
T ss_pred HHHHHHHHHHHHHHccCchhH--------HHHHHHHHHhhhccHH
Confidence 334455566676656666643 5678999999987554
No 377
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.86 E-value=1.4e+02 Score=18.93 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=24.8
Q ss_pred hhccChHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
..|.--|...+..+++++. +.|++.+..-+.+
T Consensus 64 ~~GH~~G~~~l~~i~~~c~-~lGIk~lTvYaFS 95 (275)
T PRK14835 64 EMGHEFGVQKAYEVLEWCL-ELGIPTVTIWVFS 95 (275)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEEE
Confidence 3344558888999999998 8999998876553
No 378
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=21.85 E-value=1e+02 Score=14.05 Aligned_cols=21 Identities=10% Similarity=-0.124 Sum_probs=17.4
Q ss_pred hhhhccChHHHHHHHHHHHHh
Q 034515 27 PKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~ 47 (92)
.-||+--+|..|.+.+-+...
T Consensus 4 elYR~stlG~aL~dtLDeli~ 24 (49)
T PF02268_consen 4 ELYRRSTLGIALTDTLDELIQ 24 (49)
T ss_dssp CGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHH
Confidence 358999999999998888776
No 379
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=21.77 E-value=2.3e+02 Score=18.07 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
.|.++...+++.+. +.|++.+.+.+...-....++.+.+|.
T Consensus 252 ~Gi~~a~e~i~~L~-~~gv~GvH~yt~n~~~~~~~il~~l~l 292 (296)
T PRK09432 252 VGASIAMDMVKILS-REGVKDFHFYTLNRAELTYAICHTLGV 292 (296)
T ss_pred HHHHHHHHHHHHHH-HCCCCEEEEecCCChHHHHHHHHHhCC
Confidence 56667777777776 567888888887777778889998886
No 380
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.75 E-value=1.7e+02 Score=18.28 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=26.0
Q ss_pred hhccChHHHHHHHHHHHHhhccCccEEEEEecCC
Q 034515 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGES 62 (92)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~ 62 (92)
..|.--|-.-+..++.++. +.|++.+.+-+.+.
T Consensus 37 ~~GH~~G~~~l~~i~~~c~-~lgI~~lTvYaFS~ 69 (249)
T PRK14834 37 AAGHRAGVEALRRVVRAAG-ELGIGYLTLFAFSS 69 (249)
T ss_pred hhhHHHHHHHHHHHHHHHH-HcCCCEEEEEEEec
Confidence 3455558888999999998 89999998877544
No 381
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=21.68 E-value=1.7e+02 Score=19.32 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecC
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGE 61 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~ 61 (92)
.|+.++..+.+++. +.|++.++..++.
T Consensus 126 ~GR~~l~~~~~~~e-~~g~~ViYgDTDS 152 (371)
T cd05537 126 RGHEIMKQTRAWIE-QQGYQVIYGDTDS 152 (371)
T ss_pred HHHHHHHHHHHHHH-HcCCEEEEecCCc
Confidence 47888888888886 7898888777763
No 382
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=21.66 E-value=99 Score=15.87 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=12.5
Q ss_pred HHHHHHHHhcCCeeech
Q 034515 64 GASLRLFQKLGFEDISY 80 (92)
Q Consensus 64 ~~~~~~~~~~Gf~~~~~ 80 (92)
..|..++++.||+.+.+
T Consensus 4 ~~A~~~L~~~G~~IL~r 20 (93)
T PF02021_consen 4 ELAARYLERKGYRILER 20 (93)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHCCCEEeee
Confidence 35778888999998874
No 383
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.62 E-value=1.7e+02 Score=16.60 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=23.9
Q ss_pred eeeeeeeeeChhhhccChHHHHHHHHHHHHh
Q 034515 17 LAEVEIMIAEPKSRGKGLAKDAVLMMMAYAV 47 (92)
Q Consensus 17 ~~~i~~~~v~~~~r~~G~g~~l~~~~~~~~~ 47 (92)
.-+++.+-| ++.+|..+-.+.++.+....+
T Consensus 7 vkyLGsveV-~~~kG~~v~~~A~rki~~~~k 36 (148)
T cd01212 7 LGYLGSVEV-LAHKGNGVLCQAMRKIVGEYK 36 (148)
T ss_pred eEecceEEe-cCCCCcHHHHHHHHHHHHHHH
Confidence 357888998 889999998888888876543
No 384
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.52 E-value=86 Score=16.43 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.3
Q ss_pred cHHHHHHHHhcCCeee
Q 034515 63 NGASLRLFQKLGFEDI 78 (92)
Q Consensus 63 n~~~~~~~~~~Gf~~~ 78 (92)
+..++++|++.|.-+-
T Consensus 13 s~~tlR~ye~~GLi~p 28 (108)
T cd01107 13 SIKALRYYDKIGLLKP 28 (108)
T ss_pred CHHHHHHHHHcCCCCC
Confidence 5779999999998754
No 385
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=21.47 E-value=30 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 34 LAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 34 ~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
++..+++...+.. ...+..+--.+..+.....+|.+|+||+=-.
T Consensus 21 Ia~yil~n~~~v~--~~si~~lA~~~~vS~aTv~Rf~kklG~~gf~ 64 (284)
T PRK11302 21 VAEVILASPQTAI--HSSIATLAKMANVSEPTVNRFCRSLDTKGFP 64 (284)
T ss_pred HHHHHHhCHHHHH--hcCHHHHHHHhCCCHHHHHHHHHHcCCCCHH
Confidence 4444444433322 3444545445666677789999999997655
No 386
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.44 E-value=1.8e+02 Score=16.72 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=39.4
Q ss_pred ceeeeeeeeeChhhhc------cChHHHHHHHHHHHHhhccCccE--EEEEe----------------cCCc-HHHHHHH
Q 034515 16 ELAEVEIMIAEPKSRG------KGLAKDAVLMMMAYAVENFGIHV--FRAKI----------------GESN-GASLRLF 70 (92)
Q Consensus 16 ~~~~i~~~~v~~~~r~------~G~g~~l~~~~~~~~~~~~~~~~--i~~~~----------------~~~n-~~~~~~~ 70 (92)
+.+.+.++.. |+... --||...++.+++.+. ..|.+. +.+.+ -..| +++.++.
T Consensus 39 ~igGm~H~mL-P~~~~~~~~~~~rY~d~ai~~li~~m~-~~Ga~~~~l~akifGGA~m~~~~~~~~~IG~rNi~~a~~~L 116 (157)
T PRK13488 39 KIGGLAHVML-PESSGAGDRNPGKYADTAIPLLIEEMV-KLGARKSKLEAKLAGGAAMFDFSSNNLNIGERNIESAKETL 116 (157)
T ss_pred CEEEEEEEEC-CCCCCCCCCCCcccHHHHHHHHHHHHH-HcCCCHHHEEEEEEeCcccccCCCccCChHHHHHHHHHHHH
Confidence 6777777775 74321 1388899999998887 555442 22221 1223 4567788
Q ss_pred HhcCCeeech
Q 034515 71 QKLGFEDISY 80 (92)
Q Consensus 71 ~~~Gf~~~~~ 80 (92)
++.|...+..
T Consensus 117 ~~~gi~i~a~ 126 (157)
T PRK13488 117 KKLGIRIVAE 126 (157)
T ss_pred HHCCCcEEEE
Confidence 8888877663
No 387
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.44 E-value=1.2e+02 Score=19.29 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCeeechhhhHHH
Q 034515 65 ASLRLFQKLGFEDISYSEIFKE 86 (92)
Q Consensus 65 ~~~~~~~~~Gf~~~~~~~~~~~ 86 (92)
....++++.||+.++....+.+
T Consensus 114 ~vi~~~E~~GfKvigahei~~~ 135 (279)
T COG3494 114 AVIDFIESRGFKVIGAHEIVPG 135 (279)
T ss_pred HHHHHHHhcCcEEecHhhhhhh
Confidence 3567899999999987665544
No 388
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.30 E-value=1.5e+02 Score=15.88 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=23.9
Q ss_pred cChHHHHHHHHHHHHhhccC---ccEEEEEecCCc---HHHHHHH
Q 034515 32 KGLAKDAVLMMMAYAVENFG---IHVFRAKIGESN---GASLRLF 70 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~---~~~i~~~~~~~n---~~~~~~~ 70 (92)
.++...+++.+.+.++ +.| +..+.+.+..-. +.+++|.
T Consensus 4 ~si~~~iv~~v~~~a~-~~~~~~V~~V~l~iG~ls~V~p~~L~f~ 47 (114)
T PRK03681 4 ITLCQRALELIEQQAA-KHGAKRVTGVWLKIGAFSCVETSSLAFC 47 (114)
T ss_pred HHHHHHHHHHHHHHHH-HcCCCeEEEEEEEEcCccccCHHHHHHH
Confidence 4678889999988887 555 445555554432 4555554
No 389
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=21.21 E-value=2.2e+02 Score=20.16 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=38.6
Q ss_pred hhhhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 27 PKSRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 27 ~~~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+..+|.-|- ++++++++-+.+.+|-+.+.-.-+-.|..|.++.+|...+..-
T Consensus 230 ~R~~g~eYd-~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~ 281 (582)
T KOG1257|consen 230 RRVRGKEYD-EFLDEFMEAVVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCM 281 (582)
T ss_pred ccccccHHH-HHHHHHHHHHHHHhCcceEEEehhccchhHHHHHHHhccccce
Confidence 444555443 5666667666668898988888888899999999998776654
No 390
>PF10887 DUF2686: Protein of unknown function (DUF2686); InterPro: IPR021220 Some members in this family of proteins are annotated as yjfZ however currently no function is known.
Probab=21.19 E-value=1.5e+02 Score=18.39 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhccCcc-EEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 38 AVLMMMAYAVENFGIH-VFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 38 l~~~~~~~~~~~~~~~-~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
++.+++..-. ..+.. .+-+...++ +..+|.++||+.+..
T Consensus 205 ~~AALLNAn~-~~g~dp~IGl~ayp~---tA~ihs~~Gy~viPg 244 (276)
T PF10887_consen 205 ALAALLNANI-GMGNDPIIGLEAYPG---TAEIHSKMGYEVIPG 244 (276)
T ss_pred HHHHHHhccc-cCCCCCeeeeeeCCC---cHhhhhccCceeCCC
Confidence 3444444333 34443 333444333 677999999998873
No 391
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=21.19 E-value=1.5e+02 Score=15.91 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHH
Q 034515 33 GLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQ 71 (92)
Q Consensus 33 G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~ 71 (92)
.+++.|+..+.+. ++.+++.|.+...+++.-...+..
T Consensus 82 ~~A~~Lf~~LR~~--D~~~~~~I~ie~~~~~~~g~Ai~d 118 (125)
T PF03481_consen 82 EAARNLFAALREL--DELGVDLILIEGPPETGLGLAIMD 118 (125)
T ss_dssp HHHHHHHHHHHHH--HHTT-SEEEEEEESGCCCHHHHHH
T ss_pred HHHHHHHHHHHHH--hhcCCCEEEEeeCCCcCcHHHHHH
Confidence 3566666665444 356999999988776644444433
No 392
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=21.18 E-value=1.7e+02 Score=16.43 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.1
Q ss_pred CCcHHHHHHHH-hcCCeeec
Q 034515 61 ESNGASLRLFQ-KLGFEDIS 79 (92)
Q Consensus 61 ~~n~~~~~~~~-~~Gf~~~~ 79 (92)
++=.++..||+ .+||+...
T Consensus 15 ~Dle~a~~FY~~vLG~~~~~ 34 (166)
T cd09014 15 SDVDANRDFMEEVLGFRLRE 34 (166)
T ss_pred CCHHHHHHHHHHccCCEEEE
Confidence 34467788886 58887654
No 393
>PRK13749 transcriptional regulator MerD; Provisional
Probab=21.14 E-value=89 Score=17.07 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=13.1
Q ss_pred cHHHHHHHHhcCCeee
Q 034515 63 NGASLRLFQKLGFEDI 78 (92)
Q Consensus 63 n~~~~~~~~~~Gf~~~ 78 (92)
+..++++|++.|.-+-
T Consensus 16 S~~tiR~YE~~GLl~p 31 (121)
T PRK13749 16 SVHIVRDYLLRGLLRP 31 (121)
T ss_pred CHHHHHHHHHCCCCCC
Confidence 5779999999998754
No 394
>PLN02458 transferase, transferring glycosyl groups
Probab=21.13 E-value=1.7e+02 Score=19.32 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 40 LMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 40 ~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
..++++++ +...+-|.--.+.+|..+.++|+.+
T Consensus 191 N~AL~~IR-~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 191 NLALRHIE-HHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred HHHHHHHH-hcCcCceEEEccCCCcccHHHHHHH
Confidence 55566666 4445666777899999999999984
No 395
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=21.08 E-value=1.8e+02 Score=16.62 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEec-CCcHHHHHHHHhcCCeeec
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIG-ESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~-~~n~~~~~~~~~~Gf~~~~ 79 (92)
-..+++.+.+.++ ..|.= +...+. ++-....++.++.||+...
T Consensus 110 ~~~~l~~~~~~Lk-~gG~l-v~~~~~~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 110 LTAIIDWSLAHLH-PGGRL-VLTFILLENLHSALAHLEKCGVSELD 153 (187)
T ss_pred HHHHHHHHHHhcC-CCeEE-EEEEecHhhHHHHHHHHHHCCCCcce
Confidence 4566777777765 44432 332323 3334568899999998665
No 396
>PLN02672 methionine S-methyltransferase
Probab=21.06 E-value=2.7e+02 Score=21.62 Aligned_cols=48 Identities=27% Similarity=0.418 Sum_probs=35.3
Q ss_pred hccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHH--HHHHhcCCeeech
Q 034515 30 RGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASL--RLFQKLGFEDISY 80 (92)
Q Consensus 30 r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~--~~~~~~Gf~~~~~ 80 (92)
-|.++-++++..+.++++ ..| .+.+++..+...+. +++++.||+....
T Consensus 252 dGL~~yr~i~~~a~~~L~-pgG--~l~lEiG~~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 252 FGLGLIARAVEEGISVIK-PMG--IMIFNMGGRPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred cHHHHHHHHHHHHHHhcc-CCC--EEEEEECccHHHHHHHHHHHHCCCCeeEE
Confidence 345556788888888876 555 56788887776665 4999999998764
No 397
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=21.03 E-value=1.7e+02 Score=16.28 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCC
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGF 75 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf 75 (92)
|+-+++..++.+. ..++..+.+.+...+......+...+.
T Consensus 25 g~~li~~~i~~l~-~~~~~~i~vv~~~~~~~~~~~~~~~~~ 64 (186)
T cd04182 25 GKPLLRHALDAAL-AAGLSRVIVVLGAEADAVRAALAGLPV 64 (186)
T ss_pred CeeHHHHHHHHHH-hCCCCcEEEECCCcHHHHHHHhcCCCe
Confidence 5667777777776 446777776665554444444444454
No 398
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=20.96 E-value=89 Score=17.28 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=13.2
Q ss_pred cHHHHHHHHhcCCeee
Q 034515 63 NGASLRLFQKLGFEDI 78 (92)
Q Consensus 63 n~~~~~~~~~~Gf~~~ 78 (92)
+..++++|++.|.-.-
T Consensus 13 s~~tlRyYE~~GLl~p 28 (135)
T PRK10227 13 TSKAIRFYEEKGLVTP 28 (135)
T ss_pred CHHHHHHHHHCCCCCC
Confidence 5778999999998754
No 399
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=20.80 E-value=99 Score=20.10 Aligned_cols=34 Identities=9% Similarity=0.298 Sum_probs=26.4
Q ss_pred eeeeChhhhccChHHHHHHHHHHHHhhccCccEE
Q 034515 22 IMIAEPKSRGKGLAKDAVLMMMAYAVENFGIHVF 55 (92)
Q Consensus 22 ~~~v~~~~r~~G~g~~l~~~~~~~~~~~~~~~~i 55 (92)
.++|+..++.-|+|.++...+.+.++..+..+..
T Consensus 255 ~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~ 288 (324)
T COG0022 255 LVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPIL 288 (324)
T ss_pred EEEEEeccccCChHHHHHHHHHHHHHHhhcCchh
Confidence 4577888999999999999888888765555543
No 400
>PF01526 DDE_Tnp_Tn3: Tn3 transposase DDE domain; InterPro: IPR002513 Proteins containing this domain include transposases of Tn3, Tn21, Tn1721, Tn2501, Tn3926 transposons from Escherichia coli. The specific binding of the Tn3 transposase to DNA has been demonstrated. Sequence analysis has suggested that the invariant triad of Asp689, Asp765, Glu895 (numbering as in Tn3) may correspond to the D-D-35-E motif previously implicated in the catalytic performance of numerous transposases [].; GO: 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.76 E-value=2.7e+02 Score=18.63 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeechhhhHHHh
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISYSEIFKEV 87 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~~~~~~ 87 (92)
+..+++.++..-. ...+..+...+..-|.....+..=+||+..++...+.+.
T Consensus 153 a~yvlDgLl~~~t-~~~~~~~~tDThG~s~~~Fal~~llG~~f~PRi~~~~~~ 204 (388)
T PF01526_consen 153 AHYVLDGLLRNET-DLQPDEHYTDTHGYSDVVFALFHLLGFRFAPRIRDLKDQ 204 (388)
T ss_pred HHHHHHHHHhcCC-CCCceeeecCccchhhHHHHHHHhcCCccccCccchhhc
Confidence 5566777777654 678888888888999999999999999999987776553
No 401
>PF12294 DUF3626: Protein of unknown function (DUF3626); InterPro: IPR022074 This family of proteins is found in bacteria. Proteins in this family are typically between 294 and 374 amino acids in length.
Probab=20.75 E-value=50 Score=21.10 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=16.6
Q ss_pred eeeeeeeChhhhccChHHHHHHH
Q 034515 19 EVEIMIAEPKSRGKGLAKDAVLM 41 (92)
Q Consensus 19 ~i~~~~v~~~~r~~G~g~~l~~~ 41 (92)
.+..+++||.|||.-++..+-+.
T Consensus 190 DVeaLVlDPsyrgT~ve~~~~~l 212 (297)
T PF12294_consen 190 DVEALVLDPSYRGTEVEAAARAL 212 (297)
T ss_pred hhHHHhcCccccCChHHHHHHHH
Confidence 36678899999988776654433
No 402
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=20.72 E-value=1.3e+02 Score=14.94 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
|-.++..+...+. ..|.+.. +..-++...+.+.+.|+...-
T Consensus 58 ~~~~L~~~~~~~~-~~~~~~~---l~~~~~~~~~~l~~~g~~~~~ 98 (107)
T cd07042 58 AAEALEELVKDLR-KRGVELY---LAGLNPQVRELLERAGLLDEI 98 (107)
T ss_pred HHHHHHHHHHHHH-HCCCEEE---EecCCHHHHHHHHHcCcHHHh
Confidence 3344555555554 4565544 334466889999999987554
No 403
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=20.65 E-value=2.1e+02 Score=17.17 Aligned_cols=41 Identities=24% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
-++|+..++-.++ ..|+..+.+-..-+|. .|.+.+.|..-+
T Consensus 124 l~~Lm~DaLi~Ak-~~gfDVFNaLd~mdN~---~fL~~lKFg~Gd 164 (190)
T PF02799_consen 124 LKELMNDALILAK-NEGFDVFNALDLMDNS---SFLEDLKFGPGD 164 (190)
T ss_dssp HHHHHHHHHHHHH-HTTESEEEEESTTTGG---GTTTTTT-EEEE
T ss_pred HHHHHHHHHHHHH-HcCCCEEehhhhccch---hhHhhCCccCCC
Confidence 5678888888887 7899999988888887 478888887543
No 404
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=20.65 E-value=59 Score=15.02 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=15.7
Q ss_pred CCcHHHHHHHHhcCCeeechh
Q 034515 61 ESNGASLRLFQKLGFEDISYS 81 (92)
Q Consensus 61 ~~n~~~~~~~~~~Gf~~~~~~ 81 (92)
..++....++.++||...+..
T Consensus 12 ~~yP~~~~il~~~gf~~l~~p 32 (59)
T PF08984_consen 12 EQYPELIEILVSYGFHCLGNP 32 (59)
T ss_dssp HH-GGGHHHHHHTTGGGGGSC
T ss_pred HHCHHHHHHHHHcCCcccCCc
Confidence 446778889999999988743
No 405
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.53 E-value=2.6e+02 Score=18.24 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=33.5
Q ss_pred hhccChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeec
Q 034515 29 SRGKGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDIS 79 (92)
Q Consensus 29 ~r~~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~ 79 (92)
+++.-+..+-...+.+++. +.|+..+ +.+-+..+..+..++|-....
T Consensus 69 ~~~~el~~e~~~~L~~~~~-~~Gi~~~---stpfd~~svd~l~~~~v~~~K 115 (327)
T TIGR03586 69 YQEAHTPWEWHKELFERAK-ELGLTIF---SSPFDETAVDFLESLDVPAYK 115 (327)
T ss_pred HHHhhCCHHHHHHHHHHHH-HhCCcEE---EccCCHHHHHHHHHcCCCEEE
Confidence 4444555666677888887 8898877 666788899999887654443
No 406
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.51 E-value=1e+02 Score=13.71 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=16.2
Q ss_pred ccEEEEEecCCcHHHHHHHHhcCCee
Q 034515 52 IHVFRAKIGESNGASLRLFQKLGFED 77 (92)
Q Consensus 52 ~~~i~~~~~~~n~~~~~~~~~~Gf~~ 77 (92)
...+...+.. .....+..++.||+.
T Consensus 40 ~~~v~~~ve~-~~~~~~~L~~~G~~v 64 (65)
T cd04882 40 KALLIFRTED-IEKAIEVLQERGVEL 64 (65)
T ss_pred eEEEEEEeCC-HHHHHHHHHHCCceE
Confidence 3445555543 567788888888864
No 407
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=20.23 E-value=1.6e+02 Score=15.67 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=32.8
Q ss_pred ChHH-HHHHHHHHHHhhccCccEEEEEec---CCcHHHHHHHHhcCCeeech
Q 034515 33 GLAK-DAVLMMMAYAVENFGIHVFRAKIG---ESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 33 G~g~-~l~~~~~~~~~~~~~~~~i~~~~~---~~n~~~~~~~~~~Gf~~~~~ 80 (92)
-++. .+.+.+.+.+. +.|++.+...+. +..+.+++.+.+.|++....
T Consensus 42 ~~Aa~~~a~~~~~~~~-~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I 92 (108)
T TIGR03632 42 PYAAQLAAEDAAKKAK-EFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSI 92 (108)
T ss_pred HHHHHHHHHHHHHHHH-HcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEE
Confidence 4444 44455556666 789999988875 44677888888889876653
No 408
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=20.15 E-value=2.2e+02 Score=17.31 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCeeech
Q 034515 36 KDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFEDISY 80 (92)
Q Consensus 36 ~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~ 80 (92)
..++..+.+.++ ..|.=.+..............+++.||+....
T Consensus 193 ~~l~~~~~~~Lk-pgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 193 LELAPDLARLLK-PGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred HHHHHHHHHhcC-CCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 345555556654 44443333233344456678889999998764
No 409
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=20.13 E-value=2.1e+02 Score=17.08 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhcCCe
Q 034515 35 AKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKLGFE 76 (92)
Q Consensus 35 g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~Gf~ 76 (92)
-..+++.+...++ .-|.=.+.+.+.+.=..+...++++||.
T Consensus 114 i~~ile~~~~~l~-~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 114 IEEILEAAWERLK-PGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred HHHHHHHHHHHcC-cCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 5677777777775 4443334444444446678999999994
No 410
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=20.05 E-value=2.5e+02 Score=18.89 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=21.9
Q ss_pred ccCccEEEEEecCCcHHHHHHHHhcCCeeechhh
Q 034515 49 NFGIHVFRAKIGESNGASLRLFQKLGFEDISYSE 82 (92)
Q Consensus 49 ~~~~~~i~~~~~~~n~~~~~~~~~~Gf~~~~~~~ 82 (92)
..|++.+.+-+ .|+.-..-.+..|.+.+++.+
T Consensus 344 ~LGv~~irLLT--nnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 344 DLGVRSMRLLT--NNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HcCCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 56788765544 477666777788888876543
No 411
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.03 E-value=96 Score=16.99 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.4
Q ss_pred CCcHHHHHHH-HhcCCeeech
Q 034515 61 ESNGASLRLF-QKLGFEDISY 80 (92)
Q Consensus 61 ~~n~~~~~~~-~~~Gf~~~~~ 80 (92)
++=.+|.+|| +-+||+....
T Consensus 8 ~Dle~s~~Fy~~vLG~~~~~~ 28 (141)
T cd07258 8 ENFEASRDSLVEDFGFRVSDL 28 (141)
T ss_pred CCHHHHHHHHHhcCCCEeeee
Confidence 4447889999 6899997654
No 412
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.00 E-value=2.6e+02 Score=18.48 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=26.4
Q ss_pred cChHHHHHHHHHHHHhhccCccEEEEEecCCcHHHHHHHHhc
Q 034515 32 KGLAKDAVLMMMAYAVENFGIHVFRAKIGESNGASLRLFQKL 73 (92)
Q Consensus 32 ~G~g~~l~~~~~~~~~~~~~~~~i~~~~~~~n~~~~~~~~~~ 73 (92)
+|++.+-+..+.+++. +.|+..+ +.+.+..+..+..++
T Consensus 164 ~g~~~e~l~~L~~~~~-~~Gl~~~---t~v~d~~~~~~l~~~ 201 (360)
T PRK12595 164 QGLGVEGLKILKQVAD-EYGLAVI---SEIVNPADVEVALDY 201 (360)
T ss_pred cCCCHHHHHHHHHHHH-HcCCCEE---EeeCCHHHHHHHHHh
Confidence 4455577888888876 8898877 455566666666553
Done!