Query 034516
Match_columns 92
No_of_seqs 128 out of 1296
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 99.8 4.5E-19 9.7E-24 104.0 10.1 88 5-92 84-173 (187)
2 COG5126 FRQ1 Ca2+-binding prot 99.8 4.6E-19 9.9E-24 101.2 9.0 84 3-91 70-153 (160)
3 PF13499 EF-hand_7: EF-hand do 99.7 3.1E-17 6.6E-22 81.8 6.8 66 26-92 1-66 (66)
4 KOG0027 Calmodulin and related 99.7 4.6E-17 9.9E-22 93.1 8.1 84 4-92 60-147 (151)
5 KOG0038 Ca2+-binding kinase in 99.6 1.5E-15 3.2E-20 85.2 6.9 89 4-92 87-175 (189)
6 KOG0028 Ca2+-binding protein ( 99.6 6.9E-15 1.5E-19 83.4 8.2 84 4-92 85-168 (172)
7 KOG0044 Ca2+ sensor (EF-Hand s 99.6 5.1E-15 1.1E-19 87.1 7.4 87 4-91 80-172 (193)
8 cd05022 S-100A13 S-100A13: S-1 99.6 7.6E-15 1.6E-19 77.1 6.6 63 25-92 8-73 (89)
9 PTZ00183 centrin; Provisional 99.6 4.3E-14 9.3E-19 80.7 9.2 84 4-92 69-152 (158)
10 PTZ00184 calmodulin; Provision 99.6 8.2E-14 1.8E-18 78.7 9.7 84 4-92 63-146 (149)
11 cd05027 S-100B S-100B: S-100B 99.5 7.8E-14 1.7E-18 73.2 7.4 63 25-92 8-77 (88)
12 cd05026 S-100Z S-100Z: S-100Z 99.4 4E-13 8.8E-18 71.2 5.8 64 25-92 10-79 (93)
13 KOG0031 Myosin regulatory ligh 99.4 3.6E-12 7.7E-17 72.1 9.1 85 3-92 79-163 (171)
14 KOG0027 Calmodulin and related 99.4 1.2E-12 2.5E-17 74.9 7.4 66 22-92 5-70 (151)
15 KOG0037 Ca2+-binding protein, 99.4 3.3E-12 7.1E-17 75.8 8.2 76 4-91 110-185 (221)
16 cd05031 S-100A10_like S-100A10 99.4 2.7E-12 5.8E-17 68.1 7.1 65 24-92 7-77 (94)
17 cd05025 S-100A1 S-100A1: S-100 99.4 3.2E-12 7E-17 67.6 7.2 64 24-92 8-78 (92)
18 KOG0030 Myosin essential light 99.4 2.6E-12 5.6E-17 71.5 6.5 83 3-91 64-148 (152)
19 cd05029 S-100A6 S-100A6: S-100 99.4 5.9E-12 1.3E-16 66.1 7.1 63 25-92 10-77 (88)
20 smart00027 EH Eps15 homology d 99.3 7.7E-12 1.7E-16 66.6 6.9 64 22-92 7-70 (96)
21 cd00052 EH Eps15 homology doma 99.3 6.7E-12 1.4E-16 62.3 6.2 58 28-92 2-59 (67)
22 cd00213 S-100 S-100: S-100 dom 99.3 1.2E-11 2.6E-16 64.8 7.1 66 23-92 6-77 (88)
23 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.5E-11 3.3E-16 72.6 7.6 84 4-92 43-126 (193)
24 COG5126 FRQ1 Ca2+-binding prot 99.3 2.1E-11 4.7E-16 69.9 7.2 65 22-92 17-81 (160)
25 cd00051 EFh EF-hand, calcium b 99.3 3.8E-11 8.3E-16 58.0 7.0 61 27-92 2-62 (63)
26 PF14658 EF-hand_9: EF-hand do 99.2 5.6E-11 1.2E-15 58.7 5.8 60 29-92 2-62 (66)
27 cd00252 SPARC_EC SPARC_EC; ext 99.2 8.9E-11 1.9E-15 64.4 7.1 60 24-92 47-106 (116)
28 cd05023 S-100A11 S-100A11: S-1 99.2 1.6E-10 3.4E-15 60.8 7.4 66 23-92 7-78 (89)
29 PF13833 EF-hand_8: EF-hand do 99.2 6E-11 1.3E-15 56.8 5.2 50 38-92 1-51 (54)
30 PTZ00183 centrin; Provisional 99.1 1.4E-09 3.1E-14 62.0 9.1 83 4-91 33-115 (158)
31 PTZ00184 calmodulin; Provision 99.1 8.3E-10 1.8E-14 62.2 7.9 83 4-91 27-109 (149)
32 KOG0028 Ca2+-binding protein ( 99.1 4.1E-10 8.9E-15 64.2 6.1 65 23-92 31-95 (172)
33 KOG0031 Myosin regulatory ligh 99.1 1.2E-09 2.6E-14 62.0 7.4 47 22-69 29-75 (171)
34 cd05030 calgranulins Calgranul 99.0 1.4E-09 3.1E-14 57.0 6.3 64 25-92 8-77 (88)
35 KOG0030 Myosin essential light 99.0 1.7E-09 3.6E-14 60.4 6.0 67 20-91 6-74 (152)
36 KOG0036 Predicted mitochondria 99.0 3.1E-09 6.8E-14 68.4 7.9 76 4-90 67-142 (463)
37 PF00036 EF-hand_1: EF hand; 99.0 1.2E-09 2.7E-14 45.8 3.5 29 26-54 1-29 (29)
38 KOG0041 Predicted Ca2+-binding 98.9 1.1E-08 2.5E-13 60.5 6.9 62 25-91 99-160 (244)
39 PLN02964 phosphatidylserine de 98.9 2.4E-08 5.2E-13 68.1 8.8 62 26-92 180-241 (644)
40 PF13405 EF-hand_6: EF-hand do 98.8 1.6E-08 3.6E-13 43.0 3.6 29 26-54 1-30 (31)
41 cd05024 S-100A10 S-100A10: A s 98.8 2.6E-08 5.7E-13 52.3 4.7 63 25-92 8-74 (91)
42 PLN02964 phosphatidylserine de 98.7 1.7E-07 3.8E-12 64.0 8.3 65 22-92 140-205 (644)
43 PF12763 EF-hand_4: Cytoskelet 98.6 2.6E-07 5.6E-12 49.9 6.7 63 21-91 6-68 (104)
44 PRK12309 transaldolase/EF-hand 98.6 2.2E-07 4.7E-12 60.4 7.4 57 17-91 326-382 (391)
45 PF13833 EF-hand_8: EF-hand do 98.6 2.8E-07 6.1E-12 43.8 5.0 49 4-53 4-53 (54)
46 PF00036 EF-hand_1: EF hand; 98.6 5E-08 1.1E-12 40.9 2.0 24 69-92 3-26 (29)
47 KOG0034 Ca2+/calmodulin-depend 98.5 1.1E-06 2.3E-11 52.1 7.3 80 4-92 50-130 (187)
48 KOG2643 Ca2+ binding protein, 98.5 1.6E-07 3.4E-12 61.2 3.7 83 4-91 215-311 (489)
49 KOG0377 Protein serine/threoni 98.5 4E-07 8.7E-12 59.7 5.5 63 25-91 547-612 (631)
50 PF13202 EF-hand_5: EF hand; P 98.5 3.1E-07 6.7E-12 37.1 3.0 25 27-51 1-25 (25)
51 KOG4065 Uncharacterized conser 98.4 2.5E-06 5.4E-11 46.6 7.0 69 23-91 65-142 (144)
52 KOG0036 Predicted mitochondria 98.4 1.2E-06 2.7E-11 56.8 6.7 66 22-91 11-76 (463)
53 KOG4223 Reticulocalbin, calume 98.3 5.7E-06 1.2E-10 52.2 7.6 78 8-91 61-138 (325)
54 KOG4223 Reticulocalbin, calume 98.3 1.5E-06 3.3E-11 54.7 4.6 82 4-90 216-301 (325)
55 PF13202 EF-hand_5: EF hand; P 98.2 1.2E-06 2.6E-11 35.4 2.0 24 69-92 2-25 (25)
56 PF13499 EF-hand_7: EF-hand do 98.2 3.4E-06 7.3E-11 41.6 3.7 48 4-51 16-66 (66)
57 KOG0046 Ca2+-binding actin-bun 98.2 1.1E-05 2.3E-10 54.0 6.4 64 25-91 19-82 (627)
58 KOG0037 Ca2+-binding protein, 98.1 1.9E-05 4.1E-10 47.5 6.8 62 25-90 57-118 (221)
59 PF14788 EF-hand_10: EF hand; 98.1 1.4E-05 3.1E-10 37.5 4.9 46 41-91 1-46 (51)
60 KOG4251 Calcium binding protei 98.0 5.8E-06 1.3E-10 50.8 3.0 65 23-89 99-163 (362)
61 PF10591 SPARC_Ca_bdg: Secrete 98.0 2.1E-06 4.6E-11 47.0 1.1 61 24-91 53-113 (113)
62 KOG0751 Mitochondrial aspartat 97.9 7.6E-05 1.7E-09 50.0 7.3 48 4-54 90-137 (694)
63 KOG4666 Predicted phosphate ac 97.9 4E-05 8.6E-10 48.8 5.5 82 4-91 275-356 (412)
64 PF14788 EF-hand_10: EF hand; 97.9 8.3E-05 1.8E-09 34.9 5.2 49 5-54 2-50 (51)
65 cd00051 EFh EF-hand, calcium b 97.9 7E-05 1.5E-09 35.4 4.9 47 4-51 16-62 (63)
66 KOG0040 Ca2+-binding actin-bun 97.8 5.3E-05 1.2E-09 56.1 5.8 63 25-92 2253-2322(2399)
67 cd05030 calgranulins Calgranul 97.8 6.4E-05 1.4E-09 39.4 4.8 51 4-54 26-80 (88)
68 smart00054 EFh EF-hand, calciu 97.8 3.2E-05 7E-10 30.9 2.9 27 27-53 2-28 (29)
69 PF13405 EF-hand_6: EF-hand do 97.8 1.7E-05 3.6E-10 33.5 1.9 24 69-92 3-26 (31)
70 cd05023 S-100A11 S-100A11: S-1 97.8 0.00012 2.6E-09 38.5 5.4 51 4-54 27-81 (89)
71 cd05026 S-100Z S-100Z: S-100Z 97.8 0.00012 2.7E-09 38.6 5.3 51 4-54 28-82 (93)
72 cd05022 S-100A13 S-100A13: S-1 97.7 0.0001 2.2E-09 38.8 4.6 51 4-54 25-76 (89)
73 cd05029 S-100A6 S-100A6: S-100 97.7 0.00024 5.2E-09 37.2 5.4 51 4-54 28-80 (88)
74 KOG2643 Ca2+ binding protein, 97.7 0.0011 2.4E-08 43.9 9.2 80 3-90 301-380 (489)
75 cd05027 S-100B S-100B: S-100B 97.6 0.00039 8.5E-09 36.4 5.2 51 4-54 26-80 (88)
76 cd00052 EH Eps15 homology doma 97.5 0.0006 1.3E-08 33.2 5.4 48 4-54 15-62 (67)
77 cd05025 S-100A1 S-100A1: S-100 97.5 0.00055 1.2E-08 36.0 5.4 51 4-54 27-81 (92)
78 cd00213 S-100 S-100: S-100 dom 97.5 0.00053 1.1E-08 35.6 5.1 51 4-54 26-80 (88)
79 cd05031 S-100A10_like S-100A10 97.5 0.00056 1.2E-08 36.1 5.2 51 4-54 26-80 (94)
80 KOG4251 Calcium binding protei 97.5 0.00054 1.2E-08 42.4 5.5 87 5-91 216-306 (362)
81 cd05024 S-100A10 S-100A10: A s 97.4 0.00099 2.2E-08 35.1 5.6 51 4-54 23-77 (91)
82 KOG0377 Protein serine/threoni 97.4 0.0013 2.9E-08 43.8 7.1 69 23-91 462-572 (631)
83 cd00252 SPARC_EC SPARC_EC; ext 97.3 0.0015 3.3E-08 36.0 5.5 43 4-51 64-106 (116)
84 smart00027 EH Eps15 homology d 97.3 0.0014 3.1E-08 34.6 5.2 48 4-54 26-73 (96)
85 PF14658 EF-hand_9: EF-hand do 97.3 0.0019 4E-08 32.1 5.1 50 4-53 14-64 (66)
86 KOG2562 Protein phosphatase 2 97.2 0.0013 2.9E-08 43.7 5.8 86 4-90 331-420 (493)
87 smart00054 EFh EF-hand, calciu 97.2 0.00054 1.2E-08 27.1 2.5 24 69-92 3-26 (29)
88 PF09279 EF-hand_like: Phospho 97.1 0.0026 5.7E-08 32.7 5.1 65 26-91 1-66 (83)
89 KOG4578 Uncharacterized conser 97.1 0.00021 4.5E-09 45.7 1.0 63 26-92 334-396 (421)
90 KOG3866 DNA-binding protein of 96.6 0.0072 1.6E-07 38.7 5.0 63 28-90 247-320 (442)
91 KOG4347 GTPase-activating prot 96.6 0.011 2.4E-07 41.0 5.9 77 5-87 535-611 (671)
92 PF12763 EF-hand_4: Cytoskelet 96.3 0.016 3.5E-07 31.3 4.8 34 21-54 39-72 (104)
93 KOG1029 Endocytic adaptor prot 96.3 0.0063 1.4E-07 43.2 3.8 62 23-91 193-254 (1118)
94 KOG0751 Mitochondrial aspartat 96.3 0.031 6.7E-07 38.1 6.7 52 33-91 82-133 (694)
95 KOG1955 Ral-GTPase effector RA 96.2 0.019 4.2E-07 39.0 5.6 63 22-91 228-290 (737)
96 KOG0042 Glycerol-3-phosphate d 96.1 0.014 3E-07 40.2 4.4 63 25-92 593-655 (680)
97 PRK12309 transaldolase/EF-hand 95.8 0.027 5.8E-07 37.2 4.9 28 27-54 359-386 (391)
98 PLN02952 phosphoinositide phos 95.8 0.27 5.8E-06 34.4 9.5 87 4-91 16-107 (599)
99 KOG2243 Ca2+ release channel ( 95.6 0.035 7.5E-07 42.4 4.9 55 30-90 4062-4116(5019)
100 PF09069 EF-hand_3: EF-hand; 95.5 0.15 3.2E-06 26.9 6.0 65 24-91 2-72 (90)
101 KOG0038 Ca2+-binding kinase in 95.3 0.036 7.8E-07 31.9 3.5 59 28-90 74-132 (189)
102 KOG3555 Ca2+-binding proteogly 94.9 0.046 1E-06 35.6 3.6 59 24-91 249-307 (434)
103 KOG0169 Phosphoinositide-speci 94.8 0.16 3.5E-06 36.1 6.2 65 22-91 133-197 (746)
104 PF05042 Caleosin: Caleosin re 94.8 0.2 4.3E-06 29.6 5.7 67 25-92 7-122 (174)
105 PF05517 p25-alpha: p25-alpha 94.4 0.16 3.5E-06 29.3 4.8 58 31-92 8-67 (154)
106 KOG2562 Protein phosphatase 2 94.4 0.071 1.5E-06 35.9 3.6 52 31-90 284-339 (493)
107 KOG0035 Ca2+-binding actin-bun 94.3 0.22 4.8E-06 36.2 6.1 66 25-91 747-813 (890)
108 KOG4666 Predicted phosphate ac 94.3 0.11 2.3E-06 33.8 4.2 63 24-90 258-320 (412)
109 KOG0039 Ferric reductase, NADH 93.3 0.29 6.3E-06 34.6 5.2 79 5-90 4-85 (646)
110 KOG1955 Ral-GTPase effector RA 92.1 0.18 4E-06 34.5 2.9 33 23-55 263-295 (737)
111 KOG1707 Predicted Ras related/ 91.1 1.5 3.2E-05 30.9 6.3 42 25-66 195-236 (625)
112 KOG2871 Uncharacterized conser 91.1 0.33 7.2E-06 32.1 3.2 42 21-63 305-346 (449)
113 KOG1265 Phospholipase C [Lipid 91.0 1.4 3E-05 32.6 6.2 85 3-91 203-296 (1189)
114 KOG0040 Ca2+-binding actin-bun 91.0 2.5 5.5E-05 33.3 7.7 50 4-53 2269-2324(2399)
115 PF10591 SPARC_Ca_bdg: Secrete 89.5 0.49 1.1E-05 25.9 2.6 28 22-49 85-112 (113)
116 KOG1029 Endocytic adaptor prot 89.3 2.1 4.6E-05 31.3 6.0 57 28-91 16-74 (1118)
117 KOG1707 Predicted Ras related/ 89.1 0.52 1.1E-05 33.0 3.0 59 25-90 315-373 (625)
118 PF08726 EFhand_Ca_insen: Ca2+ 87.0 1.1 2.4E-05 22.5 2.7 27 24-51 5-31 (69)
119 PF05042 Caleosin: Caleosin re 86.1 5.3 0.00011 23.7 7.5 63 25-91 96-163 (174)
120 PF00404 Dockerin_1: Dockerin 85.7 1.4 3E-05 16.7 2.5 18 35-52 1-18 (21)
121 PLN02230 phosphoinositide phos 84.1 13 0.00028 26.5 7.6 69 21-91 25-99 (598)
122 PF11829 DUF3349: Protein of u 83.2 5.3 0.00011 21.4 5.3 64 4-68 19-82 (96)
123 PF08976 DUF1880: Domain of un 82.2 1.3 2.9E-05 24.5 1.9 28 59-90 4-31 (118)
124 PF09068 EF-hand_2: EF hand; 81.8 2.6 5.6E-05 23.6 3.1 29 26-54 98-126 (127)
125 KOG0506 Glutaminase (contains 81.8 9.3 0.0002 26.6 6.0 63 28-92 89-156 (622)
126 KOG0998 Synaptic vesicle prote 81.5 0.73 1.6E-05 33.7 1.0 61 23-90 281-341 (847)
127 PF09068 EF-hand_2: EF hand; 80.2 8.2 0.00018 21.6 6.0 88 3-90 13-121 (127)
128 KOG4004 Matricellular protein 80.0 0.84 1.8E-05 27.8 0.7 54 31-91 193-247 (259)
129 KOG1954 Endocytosis/signaling 79.5 4.3 9.4E-05 27.4 3.9 47 37-90 455-501 (532)
130 PLN02228 Phosphoinositide phos 77.2 21 0.00046 25.3 6.8 65 21-91 20-89 (567)
131 PF01023 S_100: S-100/ICaBP ty 74.8 6.7 0.00014 17.7 3.9 30 25-54 6-37 (44)
132 KOG4347 GTPase-activating prot 74.2 2.5 5.4E-05 30.0 1.8 42 4-47 571-612 (671)
133 PF09336 Vps4_C: Vps4 C termin 73.1 9.3 0.0002 18.6 3.3 26 41-67 29-54 (62)
134 cd07313 terB_like_2 tellurium 72.5 7.3 0.00016 20.5 3.1 12 39-50 13-24 (104)
135 PF07879 PHB_acc_N: PHB/PHA ac 72.0 3.9 8.6E-05 20.1 1.8 22 32-53 10-31 (64)
136 PF12174 RST: RCD1-SRO-TAF4 (R 71.8 8.5 0.00018 19.3 3.0 49 4-56 8-56 (70)
137 KOG2301 Voltage-gated Ca2+ cha 71.6 4.9 0.00011 31.7 2.9 34 21-54 1413-1446(1592)
138 PF08414 NADPH_Ox: Respiratory 71.4 14 0.0003 19.9 5.8 59 25-90 30-88 (100)
139 TIGR00624 tag DNA-3-methyladen 70.4 1.3 2.8E-05 26.4 -0.1 48 22-70 50-97 (179)
140 PHA02335 hypothetical protein 70.0 11 0.00023 20.6 3.3 32 2-40 22-53 (118)
141 KOG3442 Uncharacterized conser 69.8 16 0.00034 20.6 4.0 44 37-82 51-94 (132)
142 KOG4578 Uncharacterized conser 69.7 5.5 0.00012 26.3 2.5 34 21-54 366-399 (421)
143 PLN02223 phosphoinositide phos 69.7 37 0.0008 24.0 7.3 69 22-91 13-89 (537)
144 PRK10353 3-methyl-adenine DNA 68.1 0.8 1.7E-05 27.5 -1.3 48 22-70 51-98 (187)
145 COG2818 Tag 3-methyladenine DN 66.9 1.9 4.1E-05 25.9 0.1 50 4-54 35-84 (188)
146 PF14513 DAG_kinase_N: Diacylg 66.9 9.9 0.00021 21.7 2.9 36 3-38 47-82 (138)
147 TIGR01848 PHA_reg_PhaR polyhyd 65.8 20 0.00044 19.6 4.9 22 32-53 10-31 (107)
148 PF02864 STAT_bind: STAT prote 64.6 18 0.0004 22.9 4.0 51 40-90 177-231 (254)
149 KOG3449 60S acidic ribosomal p 63.1 24 0.00051 19.4 5.3 39 29-68 5-43 (112)
150 KOG3555 Ca2+-binding proteogly 61.6 11 0.00025 25.0 2.8 65 25-91 211-275 (434)
151 PRK00819 RNA 2'-phosphotransfe 61.5 26 0.00056 21.0 4.1 32 36-68 28-59 (179)
152 PLN02222 phosphoinositide phos 61.1 59 0.0013 23.3 6.7 64 23-91 23-87 (581)
153 KOG0169 Phosphoinositide-speci 60.8 66 0.0014 23.8 8.1 83 4-91 188-271 (746)
154 PTZ00373 60S Acidic ribosomal 59.0 29 0.00063 19.1 5.4 38 30-68 8-45 (112)
155 PF01885 PTS_2-RNA: RNA 2'-pho 58.9 26 0.00057 21.0 3.9 33 35-68 26-58 (186)
156 PF04282 DUF438: Family of unk 58.7 23 0.0005 17.9 4.2 50 14-68 6-55 (71)
157 TIGR03573 WbuX N-acetyl sugar 58.2 45 0.00098 21.9 5.2 42 39-91 300-341 (343)
158 PLN02952 phosphoinositide phos 57.7 23 0.00049 25.4 3.9 48 38-91 13-62 (599)
159 PF03979 Sigma70_r1_1: Sigma-7 56.9 18 0.00039 18.4 2.7 28 38-68 18-45 (82)
160 KOG0041 Predicted Ca2+-binding 56.9 45 0.00098 20.7 7.1 55 5-60 116-170 (244)
161 KOG0046 Ca2+-binding actin-bun 56.2 47 0.001 23.6 5.0 50 5-54 35-86 (627)
162 KOG0998 Synaptic vesicle prote 54.2 11 0.00024 27.9 2.0 60 25-91 11-70 (847)
163 TIGR00988 hip integration host 54.1 22 0.00049 18.4 2.8 31 43-74 2-32 (94)
164 COG3763 Uncharacterized protei 52.8 30 0.00065 17.4 4.5 32 38-70 35-66 (71)
165 PF03672 UPF0154: Uncharacteri 52.8 29 0.00062 17.2 4.2 29 39-68 29-57 (64)
166 cd05833 Ribosomal_P2 Ribosomal 52.6 38 0.00082 18.5 5.4 38 30-68 6-43 (109)
167 PF02761 Cbl_N2: CBL proto-onc 51.8 35 0.00076 17.9 4.8 45 40-89 21-65 (85)
168 PRK00523 hypothetical protein; 49.9 35 0.00075 17.3 4.1 29 39-68 37-65 (72)
169 PF07308 DUF1456: Protein of u 48.2 36 0.00077 16.9 4.2 21 45-66 17-37 (68)
170 TIGR02675 tape_meas_nterm tape 46.9 34 0.00073 17.2 2.7 19 36-54 25-43 (75)
171 KOG4070 Putative signal transd 46.2 46 0.001 19.6 3.3 34 2-35 71-108 (180)
172 PF13829 DUF4191: Domain of un 45.8 74 0.0016 19.9 4.5 39 36-76 162-200 (224)
173 PF08006 DUF1700: Protein of u 44.8 64 0.0014 18.9 4.7 29 6-35 2-30 (181)
174 smart00549 TAFH TAF homology. 43.7 52 0.0011 17.5 4.1 11 80-90 37-47 (92)
175 cd07316 terB_like_DjlA N-termi 42.8 51 0.0011 17.2 4.6 12 64-75 73-84 (106)
176 PF12486 DUF3702: ImpA domain 42.4 69 0.0015 18.6 3.9 29 26-54 70-98 (148)
177 cd06404 PB1_aPKC PB1 domain is 41.5 54 0.0012 17.1 3.3 15 4-18 19-33 (83)
178 PRK14981 DNA-directed RNA poly 40.4 64 0.0014 17.6 4.5 26 43-69 80-105 (112)
179 PF09373 PMBR: Pseudomurein-bi 40.2 33 0.00071 14.3 2.2 16 39-54 2-17 (33)
180 PRK01844 hypothetical protein; 40.1 53 0.0012 16.6 4.1 30 39-69 36-65 (72)
181 PF11020 DUF2610: Domain of un 39.4 52 0.0011 17.1 2.6 49 38-90 25-73 (82)
182 PF11116 DUF2624: Protein of u 39.3 60 0.0013 17.0 7.0 51 3-54 13-63 (85)
183 KOG4403 Cell surface glycoprot 38.5 50 0.0011 22.9 3.1 49 6-54 46-97 (575)
184 TIGR01209 RNA ligase, Pab1020 37.4 78 0.0017 21.4 3.8 50 30-80 162-218 (374)
185 PF05678 VQ: VQ motif; InterP 36.5 39 0.00085 14.0 2.3 17 42-58 10-26 (31)
186 PF12631 GTPase_Cys_C: Catalyt 36.4 17 0.00038 18.0 0.6 27 28-54 26-52 (73)
187 PF06226 DUF1007: Protein of u 35.8 53 0.0011 20.0 2.7 25 30-54 55-79 (212)
188 PF15063 TC1: Thyroid cancer p 35.2 68 0.0015 16.5 4.5 8 25-32 56-63 (79)
189 PLN00138 large subunit ribosom 34.9 83 0.0018 17.4 5.4 37 31-68 7-43 (113)
190 PF03352 Adenine_glyco: Methyl 34.8 14 0.00029 22.2 0.1 48 23-71 47-94 (179)
191 PF03986 Autophagy_N: Autophag 34.7 24 0.00052 20.4 1.1 12 80-91 25-36 (145)
192 COG5394 Uncharacterized protei 34.1 1.1E+02 0.0023 18.3 4.6 22 32-53 19-40 (193)
193 PF06648 DUF1160: Protein of u 33.9 91 0.002 17.5 5.3 46 19-67 31-76 (122)
194 TIGR00987 himA integration hos 33.2 50 0.0011 17.3 2.1 30 42-73 2-31 (96)
195 KOG0713 Molecular chaperone (D 32.9 1.5E+02 0.0033 19.8 4.8 55 8-66 16-76 (336)
196 PF12213 Dpoe2NT: DNA polymera 32.8 73 0.0016 16.1 4.3 60 25-90 7-68 (73)
197 PHA02100 hypothetical protein 32.8 75 0.0016 17.0 2.6 25 56-80 27-51 (112)
198 PF10437 Lip_prot_lig_C: Bacte 31.8 27 0.00058 17.8 0.9 37 52-92 49-86 (86)
199 PF04391 DUF533: Protein of un 31.0 1.1E+02 0.0024 18.5 3.5 20 35-54 89-108 (188)
200 PF04558 tRNA_synt_1c_R1: Glut 30.3 65 0.0014 19.0 2.4 48 25-74 85-132 (164)
201 PF08461 HTH_12: Ribonuclease 30.0 77 0.0017 15.5 3.0 30 38-68 10-39 (66)
202 PF08839 CDT1: DNA replication 29.6 1.2E+02 0.0026 17.6 4.5 29 39-67 26-54 (163)
203 PF04876 Tenui_NCP: Tenuivirus 29.2 1.3E+02 0.0028 17.7 5.5 51 37-87 95-156 (175)
204 PF14178 YppF: YppF-like prote 27.6 80 0.0017 15.4 2.0 15 40-54 35-49 (60)
205 cd01612 APG12_C Ubiquitin-like 27.5 1E+02 0.0022 16.0 3.8 37 3-41 24-75 (87)
206 KOG1954 Endocytosis/signaling 27.4 66 0.0014 22.1 2.3 32 23-54 475-506 (532)
207 PLN02764 glycosyltransferase f 27.1 1.9E+02 0.0042 20.0 4.5 51 40-90 390-441 (453)
208 PF09824 ArsR: ArsR transcript 26.8 1.5E+02 0.0031 17.6 5.4 54 18-76 65-118 (160)
209 PF10897 DUF2713: Protein of u 26.5 1.3E+02 0.0027 18.7 3.2 40 4-43 177-227 (246)
210 TIGR01639 P_fal_TIGR01639 Plas 26.3 89 0.0019 15.0 4.5 27 41-68 9-35 (61)
211 PF08479 POTRA_2: POTRA domain 26.3 50 0.0011 16.3 1.3 35 37-71 9-43 (76)
212 cd07178 terB_like_YebE telluri 26.3 1.1E+02 0.0024 16.1 3.6 17 38-54 12-28 (95)
213 PF11363 DUF3164: Protein of u 26.2 1.6E+02 0.0035 17.9 4.8 40 25-68 119-158 (195)
214 PF10891 DUF2719: Protein of u 26.1 45 0.00098 17.2 1.1 19 73-91 26-44 (81)
215 COG5562 Phage envelope protein 25.2 43 0.00093 19.2 1.0 17 75-91 81-97 (137)
216 PF00808 CBFD_NFYB_HMF: Histon 25.0 94 0.002 14.8 5.9 61 23-91 4-64 (65)
217 cd01560 Thr-synth_2 Threonine 24.8 2.5E+02 0.0053 19.6 5.3 53 22-74 328-380 (460)
218 PF06384 ICAT: Beta-catenin-in 24.6 1.1E+02 0.0023 15.8 2.3 20 46-66 21-40 (78)
219 PF09851 SHOCT: Short C-termin 24.0 70 0.0015 13.0 2.2 16 39-54 14-29 (31)
220 PF08044 DUF1707: Domain of un 23.5 98 0.0021 14.5 3.5 10 80-89 21-30 (53)
221 PLN02208 glycosyltransferase f 23.5 2.6E+02 0.0055 19.3 5.0 52 38-89 382-434 (442)
222 PF09682 Holin_LLH: Phage holi 23.2 1.4E+02 0.003 16.1 6.0 45 31-76 57-105 (108)
223 PF06919 Phage_T4_Gp30_7: Phag 23.0 1.5E+02 0.0032 16.3 4.0 30 47-76 91-120 (121)
224 PF03874 RNA_pol_Rpb4: RNA pol 22.7 1.3E+02 0.0028 16.1 2.6 11 42-52 71-81 (117)
225 PRK09430 djlA Dna-J like membr 22.7 2.2E+02 0.0047 18.2 4.5 57 29-90 57-116 (267)
226 PF10163 EnY2: Transcription f 22.6 1.3E+02 0.0028 15.5 2.9 27 61-90 33-59 (86)
227 cd04411 Ribosomal_P1_P2_L12p R 22.3 1.5E+02 0.0032 16.1 5.6 26 42-68 17-42 (105)
228 PF12872 OST-HTH: OST-HTH/LOTU 22.3 1.1E+02 0.0024 14.7 4.9 35 39-90 21-55 (74)
229 PF09967 DUF2201: VWA-like dom 21.9 1E+02 0.0022 17.0 2.1 18 37-54 6-23 (126)
230 COG2979 Uncharacterized protei 21.9 2.1E+02 0.0045 17.9 3.5 33 35-68 120-152 (225)
231 PF07492 Trehalase_Ca-bi: Neut 20.6 30 0.00065 14.4 -0.1 17 71-87 4-20 (30)
232 COG1859 KptA RNA:NAD 2'-phosph 20.6 2.3E+02 0.0049 17.6 3.9 32 36-68 54-85 (211)
233 PF12132 DUF3587: Protein of u 20.5 76 0.0017 19.4 1.5 29 1-29 24-52 (199)
234 PLN03007 UDP-glucosyltransfera 20.5 2.6E+02 0.0057 19.4 4.2 51 39-90 422-476 (482)
235 PF10256 Erf4: Golgin subfamil 20.5 1.2E+02 0.0025 16.5 2.1 17 38-54 26-42 (118)
236 PF00690 Cation_ATPase_N: Cati 20.4 1.2E+02 0.0027 14.5 3.9 31 28-59 7-37 (69)
237 PF09312 SurA_N: SurA N-termin 20.2 1.7E+02 0.0036 15.9 4.8 18 56-73 64-81 (118)
238 PF02671 PAH: Paired amphipath 20.0 1.1E+02 0.0023 13.5 3.7 15 40-54 17-31 (47)
239 PTZ00315 2'-phosphotransferase 20.0 3.1E+02 0.0066 20.0 4.4 32 36-68 400-431 (582)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.81 E-value=4.5e-19 Score=103.97 Aligned_cols=88 Identities=36% Similarity=0.646 Sum_probs=83.3
Q ss_pred ccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHHHhCCCCCCc
Q 034516 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS--DEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 5 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
|+|++|+..++.+.+..+.+++++.+|++||.+++|+|+.+|+..++..+.+.+.+ ++.+..+++..+.++|.++||+
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999889999999999999999999999999999999999777777 8999999999999999999999
Q ss_pred cCHHHHHhhC
Q 034516 83 LTLGDFIKVL 92 (92)
Q Consensus 83 i~~~eF~~~l 92 (92)
|+++||.+++
T Consensus 164 IsfeEf~~~v 173 (187)
T KOG0034|consen 164 ISFEEFCKVV 173 (187)
T ss_pred CcHHHHHHHH
Confidence 9999998763
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.81 E-value=4.6e-19 Score=101.25 Aligned_cols=84 Identities=26% Similarity=0.529 Sum_probs=78.6
Q ss_pred CcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034516 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
..|+|.+|+.++.......+++++++++|+.||.|++|+|+..++..+++.+ |...++++++.+ ++.+|.+++|.
T Consensus 70 ~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~l----l~~~d~d~dG~ 144 (160)
T COG5126 70 ETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKL----LKEYDEDGDGE 144 (160)
T ss_pred CccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHH----HHhcCCCCCce
Confidence 4799999999999988788899999999999999999999999999999999 999999997774 59999999999
Q ss_pred cCHHHHHhh
Q 034516 83 LTLGDFIKV 91 (92)
Q Consensus 83 i~~~eF~~~ 91 (92)
|+|++|.++
T Consensus 145 i~~~eF~~~ 153 (160)
T COG5126 145 IDYEEFKKL 153 (160)
T ss_pred EeHHHHHHH
Confidence 999999975
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.73 E-value=3.1e-17 Score=81.85 Aligned_cols=66 Identities=26% Similarity=0.576 Sum_probs=61.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
+++.+|+.+|++++|+|+.+|+..++..+ +...++...+..+..+++.+|.+++|.|+++||.+++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999 8888888999999999999999999999999999864
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.72 E-value=4.6e-17 Score=93.09 Aligned_cols=84 Identities=20% Similarity=0.539 Sum_probs=73.4
Q ss_pred cccHHHHHHHHcccccCCC----HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCC
Q 034516 4 GLNFKDFVAFLSVFSAKAS----MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR 79 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~----~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 79 (92)
.|++++|+.++........ ..+.++.+|+.||++++|+|+..||+.++..+ |.+.+.++++.+ ++.+|.++
T Consensus 60 ~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~~~~~e~~~m----i~~~d~d~ 134 (151)
T KOG0027|consen 60 TIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSL-GEKLTDEECKEM----IREVDVDG 134 (151)
T ss_pred eEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCcCCHHHHHHH----HHhcCCCC
Confidence 6899999999987543333 24599999999999999999999999999999 999998887664 59999999
Q ss_pred CCccCHHHHHhhC
Q 034516 80 DSYLTLGDFIKVL 92 (92)
Q Consensus 80 ~g~i~~~eF~~~l 92 (92)
+|.|+|++|+.++
T Consensus 135 dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 135 DGKVNFEEFVKMM 147 (151)
T ss_pred CCeEeHHHHHHHH
Confidence 9999999999874
No 5
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=85.20 Aligned_cols=89 Identities=31% Similarity=0.528 Sum_probs=82.5
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.++|++|+..+++++-..+.+-++.-+|+.+|-|+++.|...++...+.+++...+++++...++++++.++|.+++|++
T Consensus 87 nlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl 166 (189)
T KOG0038|consen 87 NLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKL 166 (189)
T ss_pred cccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcc
Confidence 57999999999998866666778899999999999999999999999999988899999999999999999999999999
Q ss_pred CHHHHHhhC
Q 034516 84 TLGDFIKVL 92 (92)
Q Consensus 84 ~~~eF~~~l 92 (92)
++.+|.+++
T Consensus 167 ~~~eFe~~i 175 (189)
T KOG0038|consen 167 SFAEFEHVI 175 (189)
T ss_pred cHHHHHHHH
Confidence 999998763
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=6.9e-15 Score=83.37 Aligned_cols=84 Identities=23% Similarity=0.508 Sum_probs=77.2
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.|+|++|+..+........+.++++.+|+.+|-|++|.|+..+|+.+.+.+ |.+++++++.++| .++|.+++|.|
T Consensus 85 ~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~eMI----eEAd~d~dgev 159 (172)
T KOG0028|consen 85 KITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEMI----EEADRDGDGEV 159 (172)
T ss_pred eechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHHHHH----HHhcccccccc
Confidence 589999999988766567788999999999999999999999999999999 9999999988865 99999999999
Q ss_pred CHHHHHhhC
Q 034516 84 TLGDFIKVL 92 (92)
Q Consensus 84 ~~~eF~~~l 92 (92)
+-+||..+|
T Consensus 160 neeEF~~im 168 (172)
T KOG0028|consen 160 NEEEFIRIM 168 (172)
T ss_pred cHHHHHHHH
Confidence 999998764
No 7
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.60 E-value=5.1e-15 Score=87.14 Aligned_cols=87 Identities=26% Similarity=0.559 Sum_probs=75.0
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh---CC---CCCHHHHHHHHHHHHHHhCC
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS---GS---FMSDEQREQVLTQVFKDAGY 77 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~---~~---~~~~~~~~~~~~~~~~~~d~ 77 (92)
.|+|.||+..++.++ .+..+++++.+|++||.|++|+|+.+|+..++..+. +. +..+...++.++.+|+.+|.
T Consensus 80 ~i~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~ 158 (193)
T KOG0044|consen 80 TIDFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDK 158 (193)
T ss_pred CcCHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCC
Confidence 689999999999987 688889999999999999999999999999988663 21 12345567788889999999
Q ss_pred CCCCccCHHHHHhh
Q 034516 78 TRDSYLTLGDFIKV 91 (92)
Q Consensus 78 ~~~g~i~~~eF~~~ 91 (92)
|+||.||++||...
T Consensus 159 n~Dg~lT~eef~~~ 172 (193)
T KOG0044|consen 159 NKDGKLTLEEFIEG 172 (193)
T ss_pred CCCCcccHHHHHHH
Confidence 99999999999863
No 8
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.59 E-value=7.6e-15 Score=77.10 Aligned_cols=63 Identities=19% Similarity=0.322 Sum_probs=55.7
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hhCCCCCH-HHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYDS-DCNGKVSFNDILEVLRD-LSGSFMSD-EQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D~-~~~g~i~~~el~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..++.+|+.||+ +++|+|+..||+.+++. + +..++. .++++ +++.+|.|++|.|+|+||+.++
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-g~~ls~~~~v~~----mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL-PHLLKDVEGLEE----KMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-hhhccCHHHHHH----HHHHhCCCCCCCCcHHHHHHHH
Confidence 568899999999 99999999999999999 7 877777 66555 5699999999999999998864
No 9
>PTZ00183 centrin; Provisional
Probab=99.57 E-value=4.3e-14 Score=80.72 Aligned_cols=84 Identities=19% Similarity=0.506 Sum_probs=73.0
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.|++.+|+..+....+.....+.++.+|+.+|++++|.|+..|+..++..+ +..++..++.. ++..+|.+++|.|
T Consensus 69 ~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~----~~~~~d~~~~g~i 143 (158)
T PTZ00183 69 KIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQE----MIDEADRNGDGEI 143 (158)
T ss_pred cEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHH----HHHHhCCCCCCcC
Confidence 589999999887654455666889999999999999999999999999988 88899988766 4689999999999
Q ss_pred CHHHHHhhC
Q 034516 84 TLGDFIKVL 92 (92)
Q Consensus 84 ~~~eF~~~l 92 (92)
++++|..++
T Consensus 144 ~~~ef~~~~ 152 (158)
T PTZ00183 144 SEEEFYRIM 152 (158)
T ss_pred cHHHHHHHH
Confidence 999998764
No 10
>PTZ00184 calmodulin; Provisional
Probab=99.56 E-value=8.2e-14 Score=78.71 Aligned_cols=84 Identities=23% Similarity=0.531 Sum_probs=72.5
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.|++++|...+....+.......++.+|+.+|.+++|+|+.+++..++..+ +..++..+++. ++..+|.+++|.|
T Consensus 63 ~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~----~~~~~d~~~~g~i 137 (149)
T PTZ00184 63 TIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDE----MIREADVDGDGQI 137 (149)
T ss_pred cCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHH----HHHhcCCCCCCcC
Confidence 589999999887654445566788999999999999999999999999998 88888887666 4688999999999
Q ss_pred CHHHHHhhC
Q 034516 84 TLGDFIKVL 92 (92)
Q Consensus 84 ~~~eF~~~l 92 (92)
+|+||+.++
T Consensus 138 ~~~ef~~~~ 146 (149)
T PTZ00184 138 NYEEFVKMM 146 (149)
T ss_pred cHHHHHHHH
Confidence 999998764
No 11
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.54 E-value=7.8e-14 Score=73.21 Aligned_cols=63 Identities=14% Similarity=0.298 Sum_probs=55.9
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYD-SDCNG-KVSFNDILEVLRD-----LSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..++.+|+.|| ++++| .|+.+||+.+|+. + +...++.+++.+ ++.+|.+++|.|+|++|+.++
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~----i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKV----METLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHH----HHHhCCCCCCcCcHHHHHHHH
Confidence 57899999998 89999 5999999999998 6 888888887764 589999999999999998764
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.44 E-value=4e-13 Score=71.20 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=51.2
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHhhC----CCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYD-SDCNG-KVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..++.+|+.|| +|++| +|+..||+.++....+ ...++.++++ +++.+|.+++|.|+|+||+.++
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~----i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDK----IMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHH----HHHHhCCCCCCCCCHHHHHHHH
Confidence 56788899998 88998 5999999999987322 2335555555 5799999999999999999864
No 13
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.43 E-value=3.6e-12 Score=72.08 Aligned_cols=85 Identities=18% Similarity=0.395 Sum_probs=78.2
Q ss_pred CcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034516 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
-.|+|.-|+..+.....+.++++.+..+|+.||.++.|.|..+.++.+|... |.+.+++++++ +++.+-.+..|.
T Consensus 79 gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV~~----m~r~~p~d~~G~ 153 (171)
T KOG0031|consen 79 GPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTM-GDRFTDEEVDE----MYREAPIDKKGN 153 (171)
T ss_pred CCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHh-cccCCHHHHHH----HHHhCCcccCCc
Confidence 4799999999998877788999999999999999999999999999999998 99999999776 579999989999
Q ss_pred cCHHHHHhhC
Q 034516 83 LTLGDFIKVL 92 (92)
Q Consensus 83 i~~~eF~~~l 92 (92)
++|..|..++
T Consensus 154 ~dy~~~~~~i 163 (171)
T KOG0031|consen 154 FDYKAFTYII 163 (171)
T ss_pred eeHHHHHHHH
Confidence 9999998764
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.43 E-value=1.2e-12 Score=74.89 Aligned_cols=66 Identities=23% Similarity=0.492 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.....++.+|+.||++++|+|+..++..+++.+ |.+++..++..+ +...|.+++|.|++++|+.++
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~----~~~~D~dg~g~I~~~eF~~l~ 70 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDL----IKEIDLDGDGTIDFEEFLDLM 70 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHH----HHHhCCCCCCeEcHHHHHHHH
Confidence 345689999999999999999999999999999 999999998875 599999999999999999864
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.40 E-value=3.3e-12 Score=75.80 Aligned_cols=76 Identities=21% Similarity=0.413 Sum_probs=68.7
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
+|++.||..+++.+ ..++.+|+.||+|+.|.|+..||++++..+ |..++++.++-+ ++.+|..++|.|
T Consensus 110 ~i~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~l----v~kyd~~~~g~i 177 (221)
T KOG0037|consen 110 TIGFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLL----VRKYDRFGGGRI 177 (221)
T ss_pred ccCHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHH----HHHhccccCCce
Confidence 78999999999887 589999999999999999999999999999 999999876664 588887778899
Q ss_pred CHHHHHhh
Q 034516 84 TLGDFIKV 91 (92)
Q Consensus 84 ~~~eF~~~ 91 (92)
.|++|+++
T Consensus 178 ~FD~FI~c 185 (221)
T KOG0037|consen 178 DFDDFIQC 185 (221)
T ss_pred eHHHHHHH
Confidence 99999875
No 16
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.40 E-value=2.7e-12 Score=68.13 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHHh----hCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 24 QQKVQLIFKVYDS-DC-NGKVSFNDILEVLRDL----SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 24 ~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
...++.+|+.||. ++ +|.|+.+|++.+++.. .+..+++.+++. +++.+|.+++|.|+|++|++++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~----~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDK----IMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHH----HHHHhCCCCCCcCcHHHHHHHH
Confidence 4678999999997 87 6999999999999862 155677777666 5699999999999999998763
No 17
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.39 E-value=3.2e-12 Score=67.55 Aligned_cols=64 Identities=13% Similarity=0.308 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hhCC----CCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 24 QQKVQLIFKVYD-SDCNG-KVSFNDILEVLRD-LSGS----FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 24 ~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.+.++.+|+.|| ++++| .|+..|++.+++. + +. .+++.+++. +++.+|.+++|.|+|++|+.++
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l-g~~~~~~~s~~~v~~----i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTEL-SDFLDAQKDADAVDK----IMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH-HHHccCCCCHHHHHH----HHHHHCCCCCCcCcHHHHHHHH
Confidence 367899999997 99999 5999999999986 4 43 456777555 5699999999999999998763
No 18
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.38 E-value=2.6e-12 Score=71.51 Aligned_cols=83 Identities=19% Similarity=0.385 Sum_probs=69.4
Q ss_pred CcccHHHHHHHHcccccCCC--HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034516 3 DGLNFKDFVAFLSVFSAKAS--MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRD 80 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~--~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (92)
++|+|++|+.++..+..+.. .-+.+-+..++||++++|.|...||+.+|..+ |..+++++++.++ .- -.+.+
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl-Gekl~eeEVe~Ll----ag-~eD~n 137 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL-GEKLTEEEVEELL----AG-QEDSN 137 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH-HhhccHHHHHHHH----cc-ccccC
Confidence 57999999999988765433 33677888999999999999999999999999 9999999988864 32 23566
Q ss_pred CccCHHHHHhh
Q 034516 81 SYLTLGDFIKV 91 (92)
Q Consensus 81 g~i~~~eF~~~ 91 (92)
|.|+|+.|++.
T Consensus 138 G~i~YE~fVk~ 148 (152)
T KOG0030|consen 138 GCINYEAFVKH 148 (152)
T ss_pred CcCcHHHHHHH
Confidence 89999999974
No 19
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.37 E-value=5.9e-12 Score=66.10 Aligned_cols=63 Identities=17% Similarity=0.418 Sum_probs=54.0
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYDS-DC-NGKVSFNDILEVLRD---LSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..+..+|+.||. ++ +|+|+.+||+.+++. + |.+++++++++ +++.+|.+++|.|+|+||+.++
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~----m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAEIAK----LMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHHHHH----HHHHhcCCCCCCCcHHHHHHHH
Confidence 456788999997 67 899999999999974 4 88889988776 4699999999999999998764
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.35 E-value=7.7e-12 Score=66.60 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.....++.+|+.+|++++|.|+.++++.+++.. + +++.+++. ++..+|.+++|.|++++|+.++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~----i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAK----IWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHH----HHHHhcCCCCCCcCHHHHHHHH
Confidence 355688999999999999999999999999986 5 57776555 5689999999999999999763
No 21
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.34 E-value=6.7e-12 Score=62.34 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=50.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 28 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
+.+|+.+|++++|.|+.+|+..++..+ +. +.++++. +++.+|.+++|.|++++|+.++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g~--~~~~~~~----i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-GL--PRSVLAQ----IWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-CC--CHHHHHH----HHHHhcCCCCCcCCHHHHHHHH
Confidence 578999999999999999999999987 54 6666555 5799999999999999998753
No 22
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.33 E-value=1.2e-11 Score=64.81 Aligned_cols=66 Identities=17% Similarity=0.360 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcC--CCCCcccHHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 23 MQQKVQLIFKVYDS--DCNGKVSFNDILEVLRDLSGSFM----SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 23 ~~~~~~~~F~~~D~--~~~g~i~~~el~~~l~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..+.++.+|..+|+ +++|.|+.+++..+++...+.++ +..+++. ++..+|.+++|.|+|++|+.++
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~----i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDK----IMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHH----HHHHhccCCCCcCcHHHHHHHH
Confidence 34678899999999 89999999999999986325443 3666555 5799999999999999998863
No 23
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.32 E-value=1.5e-11 Score=72.60 Aligned_cols=84 Identities=18% Similarity=0.380 Sum_probs=71.8
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.++.++|..+++.+.|.+++..-...+|+.||.+++|.|+..||..++..+ .....++.+ +++|+.+|.+++|.|
T Consensus 43 ~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~eekl----~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 43 RLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTLEEKL----KWAFRLYDLDGDGYI 117 (193)
T ss_pred ccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcHHHHh----hhhheeecCCCCceE
Confidence 578889999999998889999999999999999999999999988888887 444444443 346999999999999
Q ss_pred CHHHHHhhC
Q 034516 84 TLGDFIKVL 92 (92)
Q Consensus 84 ~~~eF~~~l 92 (92)
+++|++.++
T Consensus 118 t~~Eml~iv 126 (193)
T KOG0044|consen 118 TKEEMLKIV 126 (193)
T ss_pred cHHHHHHHH
Confidence 999998753
No 24
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.29 E-value=2.1e-11 Score=69.93 Aligned_cols=65 Identities=22% Similarity=0.464 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..-++++++|.++|++++|.|+..+|..+++.+ |.+++..++..+ +...|. +.+.|+|.+|+.+|
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-g~~~s~~ei~~l----~~~~d~-~~~~idf~~Fl~~m 81 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSL-GFNPSEAEINKL----FEEIDA-GNETVDFPEFLTVM 81 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-CCCCcHHHHHHH----HHhccC-CCCccCHHHHHHHH
Confidence 344789999999999999999999999999988 999999886664 577777 77788888887653
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.29 E-value=3.8e-11 Score=58.02 Aligned_cols=61 Identities=20% Similarity=0.545 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 27 VQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 27 ~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
++.+|..+|.+++|.|+.+++..+++.+ +.+.+...+.. ++..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999998 88888887665 5799999999999999998753
No 26
>PF14658 EF-hand_9: EF-hand domain
Probab=99.23 E-value=5.6e-11 Score=58.66 Aligned_cols=60 Identities=15% Similarity=0.421 Sum_probs=53.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCC-CccCHHHHHhhC
Q 034516 29 LIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRD-SYLTLGDFIKVL 92 (92)
Q Consensus 29 ~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~l 92 (92)
.+|..||+++.|.|....+...|+.+.+..+++.+++.+ ..++|.++. |.|+++.|+.+|
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l----~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDL----INELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHH----HHHhCCCCCCceEeHHHHHHHH
Confidence 469999999999999999999999994448888887775 499999998 999999999875
No 27
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.23 E-value=8.9e-11 Score=64.44 Aligned_cols=60 Identities=17% Similarity=0.439 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 24 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
...+...|..+|.|++|.|+.+|+..+. + . ..+ ..+..++..+|.|++|.||++||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~--~~e----~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L-D--PNE----HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-c--chH----HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3568899999999999999999999876 2 2 223 335557899999999999999998753
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=1.6e-10 Score=60.79 Aligned_cols=66 Identities=12% Similarity=0.242 Sum_probs=52.6
Q ss_pred HHHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 23 MQQKVQLIFKV-YDSDCNG-KVSFNDILEVLRDLS----GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 23 ~~~~~~~~F~~-~D~~~~g-~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.-..+..+|+. +|.+++| .|+.+||+.++.... +...++.++++ +++.+|.+++|.|+|+||++++
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~----ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDR----MMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHH
Confidence 34678889999 6888876 999999999998752 23445566555 5699999999999999999864
No 29
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.21 E-value=6e-11 Score=56.76 Aligned_cols=50 Identities=24% Similarity=0.568 Sum_probs=44.3
Q ss_pred CCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 38 CNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.+|.|+.++|+.++..+ |.. +++++++. ++..+|.+++|.|+|+||+.++
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~----l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDR----LFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHH----HHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHH----HHHhcccCCCCCCCHHHHHHHH
Confidence 47999999999999777 888 99998666 5799999999999999999763
No 30
>PTZ00183 centrin; Provisional
Probab=99.12 E-value=1.4e-09 Score=61.96 Aligned_cols=83 Identities=14% Similarity=0.317 Sum_probs=57.3
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.|++++|..++..+. .......+..+|+.+|.+++|.|+..+|..++............ +..+|+.+|.+++|.|
T Consensus 33 ~i~~~e~~~~l~~~g-~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~----l~~~F~~~D~~~~G~i 107 (158)
T PTZ00183 33 TIDPKELKVAMRSLG-FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREE----ILKAFRLFDDDKTGKI 107 (158)
T ss_pred cccHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHH----HHHHHHHhCCCCCCcC
Confidence 477888877776542 22344567888888888888888888888877654233333333 4446788888888888
Q ss_pred CHHHHHhh
Q 034516 84 TLGDFIKV 91 (92)
Q Consensus 84 ~~~eF~~~ 91 (92)
+.+||..+
T Consensus 108 ~~~e~~~~ 115 (158)
T PTZ00183 108 SLKNLKRV 115 (158)
T ss_pred cHHHHHHH
Confidence 88888754
No 31
>PTZ00184 calmodulin; Provisional
Probab=99.11 E-value=8.3e-10 Score=62.25 Aligned_cols=83 Identities=16% Similarity=0.317 Sum_probs=55.0
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.|++++|..++..+.. ....+.+..+|+.+|.+++|.|+.++|..++............ +..+|+.+|.+++|.|
T Consensus 27 ~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~----~~~~F~~~D~~~~g~i 101 (149)
T PTZ00184 27 TITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEE----IKEAFKVFDRDGNGFI 101 (149)
T ss_pred cCCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHH----HHHHHHhhCCCCCCeE
Confidence 5777788777765432 2334567778888888888888888888777654222222222 3446788888888888
Q ss_pred CHHHHHhh
Q 034516 84 TLGDFIKV 91 (92)
Q Consensus 84 ~~~eF~~~ 91 (92)
+.++|..+
T Consensus 102 ~~~e~~~~ 109 (149)
T PTZ00184 102 SAAELRHV 109 (149)
T ss_pred eHHHHHHH
Confidence 88887654
No 32
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=4.1e-10 Score=64.17 Aligned_cols=65 Identities=23% Similarity=0.435 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..++++.+|..||+++.|+|+.+||+.+++.+ |..+...++..+ +...|.++.|.|+|++|++++
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kl----l~d~dk~~~g~i~fe~f~~~m 95 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKL----LADVDKEGSGKITFEDFRRVM 95 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHH----HHhhhhccCceechHHHHHHH
Confidence 34678999999999999999999999999999 999999987765 588999999999999998753
No 33
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.08 E-value=1.2e-09 Score=62.00 Aligned_cols=47 Identities=26% Similarity=0.453 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLT 69 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 69 (92)
++-++++++|.+.|.|++|.|+.++|++.+.++ |...++++++.++.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~ 75 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMK 75 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHH
Confidence 455789999999999999999999999999999 99999998877553
No 34
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.04 E-value=1.4e-09 Score=57.02 Aligned_cols=64 Identities=13% Similarity=0.350 Sum_probs=51.1
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHHHhhCCCCC----HHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYDSD--CNGKVSFNDILEVLRDLSGSFMS----DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D~~--~~g~i~~~el~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..+...|+.|+.+ .+|.|+.+|++.++....+..++ +.+++. ++..+|.+++|.|+|++|+.++
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~----i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDK----IFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHH
Confidence 5677889999865 47999999999999744255555 666555 6799999999999999999864
No 35
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.01 E-value=1.7e-09 Score=60.44 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCC--CCCccCHHHHHhh
Q 034516 20 KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT--RDSYLTLGDFIKV 91 (92)
Q Consensus 20 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~eF~~~ 91 (92)
..++..+++.+|..||..++|+|+.....++++.+ |.++++.++.+.+ .....+ .-.+|+|++|+-+
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l----~~~~~~~~~~~rl~FE~fLpm 74 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVL----GQPKRREMNVKRLDFEEFLPM 74 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHH----cCcccchhhhhhhhHHHHHHH
Confidence 45667899999999999999999999999999999 9999999977743 555544 2357889888765
No 36
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.01 E-value=3.1e-09 Score=68.43 Aligned_cols=76 Identities=24% Similarity=0.461 Sum_probs=68.5
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.++|++|..++.. .+.++..+|+..|.++||.|+.+|+...++.+ |.++++++... ++++.|.++++.|
T Consensus 67 ~vDy~eF~~Y~~~------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k----~~e~~d~~g~~~I 135 (463)
T KOG0036|consen 67 RVDYSEFKRYLDN------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAK----FFEHMDKDGKATI 135 (463)
T ss_pred cccHHHHHHHHHH------hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHH----HHHHhccCCCeee
Confidence 6899999988854 45788999999999999999999999999999 99999999777 4699999999999
Q ss_pred CHHHHHh
Q 034516 84 TLGDFIK 90 (92)
Q Consensus 84 ~~~eF~~ 90 (92)
+++||..
T Consensus 136 ~~~e~rd 142 (463)
T KOG0036|consen 136 DLEEWRD 142 (463)
T ss_pred ccHHHHh
Confidence 9999875
No 37
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.97 E-value=1.2e-09 Score=45.85 Aligned_cols=29 Identities=28% Similarity=0.708 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
+++.+|+.+|+|++|+|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46889999999999999999999999864
No 38
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=60.46 Aligned_cols=62 Identities=19% Similarity=0.413 Sum_probs=54.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
..+...|..+|.+.||+|+..|++.+|..+ |.+.+.--++.+ +++.|.|.+|+|||.||.-+
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~m----ikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNM----IKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHH----HHHhhcccccchhHHHHHHH
Confidence 567789999999999999999999999999 887777776665 59999999999999999753
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=98.87 E-value=2.4e-08 Score=68.13 Aligned_cols=62 Identities=23% Similarity=0.539 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.++.+|+.+|.+++|.|+.+||..++..+ +...+++++++ +|+.+|.+++|.|+++||..++
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~e----aFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEE----LFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHH----HHHHhCCCCCCcCCHHHHHHHH
Confidence 37899999999999999999999999987 77777777555 6899999999999999998763
No 40
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.77 E-value=1.6e-08 Score=42.99 Aligned_cols=29 Identities=31% Similarity=0.729 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-Hh
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLR-DL 54 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~-~~ 54 (92)
+++.+|+.+|++++|+|+.+||..+++ ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478899999999999999999999998 55
No 41
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.75 E-value=2.6e-08 Score=52.32 Aligned_cols=63 Identities=14% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLS----GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..+..+|+.|- .+.+.++..||+..+..-+ +....+.. ++.+++..|.|+||.|+|+||..++
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~----vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMA----VDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHH----HHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45677888887 4567999999999997432 33334444 5556799999999999999999864
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=98.69 E-value=1.7e-07 Score=64.04 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.+.++++.+|..+|++++|.+ +..+++.+ | ..+++.+. ..+..+++.+|.+++|.|+++||..++
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~-~fi~~mf~~~D~DgdG~IdfdEFl~lL 205 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETER-SFARRILAIVDYDEDGQLSFSEFSDLI 205 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHH-HHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 345788999999999999997 88899998 8 47777652 225567899999999999999998763
No 43
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.64 E-value=2.6e-07 Score=49.87 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.....++..+|+..|+ ++|.|+.++.+.++... +++.+.+.+ +|..+|.+++|+++++||+-+
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~----IW~LaD~~~dG~L~~~EF~iA 68 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQ----IWNLADIDNDGKLDFEEFAIA 68 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHH----HHHHH-SSSSSEEEHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHH----HHhhhcCCCCCcCCHHHHHHH
Confidence 4566788999999985 68999999999988775 678777666 689999999999999999865
No 44
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.64 E-value=2.2e-07 Score=60.45 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=47.7
Q ss_pred cccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 17 FSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 17 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+.+.......++.+|+.+|.+++|.|+.+|+.. ++.+|..+|.|++|.|+++||.+.
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~ 382 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAG 382 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHH
Confidence 444556677889999999999999999999831 234689999999999999999875
No 45
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.57 E-value=2.8e-07 Score=43.84 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=40.7
Q ss_pred cccHHHHHHHHcccccCC-CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKA-SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~-~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 53 (92)
.|+.++|..++..+. .. -..+++..+|..+|.+++|.|+.+||..++..
T Consensus 4 ~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 4 KITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred EECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 588999999995543 33 45566999999999999999999999998864
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=5e-08 Score=40.88 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=21.2
Q ss_pred HHHHHHhCCCCCCccCHHHHHhhC
Q 034516 69 TQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 69 ~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
+.+|+.+|.|++|.|+++||..++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHH
Confidence 457899999999999999999864
No 47
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.51 E-value=1.1e-06 Score=52.08 Aligned_cols=80 Identities=19% Similarity=0.367 Sum_probs=61.2
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCc-ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGK-VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~-i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
.++.+||..+.... ..-....+++.|+++++|. |+.++|.+.+... ..+.+..+ -+.-+|+-+|.+++|.
T Consensus 50 ~lt~eef~~i~~~~-----~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~~---Kl~faF~vYD~~~~G~ 120 (187)
T KOG0034|consen 50 YLTKEEFLSIPELA-----LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVF-SPKASKRE---KLRFAFRVYDLDGDGF 120 (187)
T ss_pred ccCHHHHHHHHHHh-----cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhh-cCCccHHH---HHHHHHHHhcCCCCCc
Confidence 56788888877332 1124677899999999988 9999999999887 55555542 2445799999999999
Q ss_pred cCHHHHHhhC
Q 034516 83 LTLGDFIKVL 92 (92)
Q Consensus 83 i~~~eF~~~l 92 (92)
|+.+|+.+++
T Consensus 121 I~reel~~iv 130 (187)
T KOG0034|consen 121 ISREELKQIL 130 (187)
T ss_pred CcHHHHHHHH
Confidence 9999998763
No 48
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.49 E-value=1.6e-07 Score=61.18 Aligned_cols=83 Identities=20% Similarity=0.412 Sum_probs=57.1
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh-----CC----CCC-----HHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS-----GS----FMS-----DEQREQVLT 69 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~-----~~----~~~-----~~~~~~~~~ 69 (92)
-|||.+|+.++..++ .++..++.+|++||.|+||.|+.+||..+.+.+. +. .++ ..++..-+
T Consensus 215 LIsfSdYiFLlTlLS---~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL- 290 (489)
T KOG2643|consen 215 LISFSDYIFLLTLLS---IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSAL- 290 (489)
T ss_pred eeeHHHHHHHHHHHc---cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhH-
Confidence 489999999998875 5566789999999999999999999999886441 11 000 11111111
Q ss_pred HHHHHhCCCCCCccCHHHHHhh
Q 034516 70 QVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 70 ~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
...-+..++++++++++|...
T Consensus 291 -~~yFFG~rg~~kLs~deF~~F 311 (489)
T KOG2643|consen 291 -LTYFFGKRGNGKLSIDEFLKF 311 (489)
T ss_pred -HHHhhccCCCccccHHHHHHH
Confidence 224456777778888887653
No 49
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.48 E-value=4e-07 Score=59.67 Aligned_cols=63 Identities=21% Similarity=0.463 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhh---CCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLS---GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
..+..+|+..|+|+.|.|+.+||.++.+.+. ...++++++-+ +.+.+|.|+||.|++.||+.+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~----la~~mD~NkDG~IDlNEfLeA 612 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILE----LARSMDLNKDGKIDLNEFLEA 612 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHH----HHHhhccCCCCcccHHHHHHH
Confidence 3467799999999999999999999988762 34566777555 458999999999999999864
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.46 E-value=3.1e-07 Score=37.14 Aligned_cols=25 Identities=28% Similarity=0.678 Sum_probs=22.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q 034516 27 VQLIFKVYDSDCNGKVSFNDILEVL 51 (92)
Q Consensus 27 ~~~~F~~~D~~~~g~i~~~el~~~l 51 (92)
++..|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 51
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.5e-06 Score=46.57 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh-----CC----CCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS-----GS----FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~-----~~----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+++.--..|.++|-|++|.++--|+.+++.... |. -.++.+++.+++.+++.-|.|++|.|+|-||...
T Consensus 65 peqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 65 PEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 333334579999999999999999999988552 21 3357889999999999999999999999999863
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.43 E-value=1.2e-06 Score=56.78 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
..+-+++.+|+.+|.+++|.++..++...+..+ ..+-++.+. +..++...|.+.+|.++|+||.+-
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-~~~~~~~~~---~~~l~~~~d~~~dg~vDy~eF~~Y 76 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-DHPKPNYEA---AKMLFSAMDANRDGRVDYSEFKRY 76 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-CCCCCchHH---HHHHHHhcccCcCCcccHHHHHHH
Confidence 345678899999999999999999999999998 555333333 333689999999999999999863
No 53
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=5.7e-06 Score=52.19 Aligned_cols=78 Identities=12% Similarity=0.252 Sum_probs=59.2
Q ss_pred HHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHH
Q 034516 8 KDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 87 (92)
Q Consensus 8 ~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 87 (92)
.++......+.+ .+..+++..++.+.|.+++|+|+..|++.++... .+..+..-+.+-|...|.+.+|.|+|++
T Consensus 61 ~e~~~~fd~l~~-ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s-----~k~~v~~~~~~~~~~~d~~~Dg~i~~ee 134 (325)
T KOG4223|consen 61 DEFADEFDQLTP-EESQERLGKLVPKIDSDSDGFVTESELKAWIMQS-----QKKYVVEEAARRWDEYDKNKDGFITWEE 134 (325)
T ss_pred hhhhhhhhhhCc-chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccCccceeeHHH
Confidence 345555555543 4477889999999999999999999999999887 2222333344457899999999999999
Q ss_pred HHhh
Q 034516 88 FIKV 91 (92)
Q Consensus 88 F~~~ 91 (92)
+...
T Consensus 135 y~~~ 138 (325)
T KOG4223|consen 135 YLPQ 138 (325)
T ss_pred hhhh
Confidence 8754
No 54
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.5e-06 Score=54.70 Aligned_cols=82 Identities=12% Similarity=0.263 Sum_probs=60.0
Q ss_pred cccHHHHHHHHcccccCC-CHHH---HHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCC
Q 034516 4 GLNFKDFVAFLSVFSAKA-SMQQ---KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR 79 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~-~~~~---~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 79 (92)
.|+++||+.-+.....++ .++. +-...+...|+|++|+++.+|++.++... +....+.+.+. ++.+.|.|+
T Consensus 216 ~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~-~~d~A~~EA~h----L~~eaD~dk 290 (325)
T KOG4223|consen 216 KISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPS-EQDHAKAEARH----LLHEADEDK 290 (325)
T ss_pred ceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCC-CccHHHHHHHH----HhhhhccCc
Confidence 589999998886644222 2221 22344556799999999999999888765 55555666555 569999999
Q ss_pred CCccCHHHHHh
Q 034516 80 DSYLTLGDFIK 90 (92)
Q Consensus 80 ~g~i~~~eF~~ 90 (92)
+|++|++|-+.
T Consensus 291 D~kLs~eEIl~ 301 (325)
T KOG4223|consen 291 DGKLSKEEILE 301 (325)
T ss_pred cccccHHHHhh
Confidence 99999999754
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.22 E-value=1.2e-06 Score=35.40 Aligned_cols=24 Identities=13% Similarity=0.390 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCCCccCHHHHHhhC
Q 034516 69 TQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 69 ~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
+.+|..+|.|++|.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 346899999999999999998763
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.18 E-value=3.4e-06 Score=41.57 Aligned_cols=48 Identities=19% Similarity=0.470 Sum_probs=37.9
Q ss_pred cccHHHHHHHHcccccC---CCHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAK---ASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 51 (92)
.|+.+|+..++..+... ....+.+..+|+.+|++++|.|+.+||..++
T Consensus 16 ~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 16 YISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp EEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57889999888776432 2233567778999999999999999998764
No 57
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.15 E-value=1.1e-05 Score=54.04 Aligned_cols=64 Identities=13% Similarity=0.310 Sum_probs=53.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
..++..|...| +++|+++..++..++... +... ....++.++.++...+.+.+|.|+||+|+.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGI 82 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHH
Confidence 46788999999 999999999999999998 5544 4444555666789999999999999999874
No 58
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.14 E-value=1.9e-05 Score=47.46 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
..+...|...|++..|+|+.+|++.++........+.+-.+.++ ..+|.+..|+|.++||..
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI----~mfd~~~~G~i~f~EF~~ 118 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMI----SMFDRDNSGTIGFKEFKA 118 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHH----HHhcCCCCCccCHHHHHH
Confidence 35666777777777777777777777765434455555544432 555555555555555544
No 59
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.13 E-value=1.4e-05 Score=37.52 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 41 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 41 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+++.+|++..++.+ ...+++..... +|+.+|.+++|.+..+||...
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~----LFq~~D~s~~g~Le~~Ef~~F 46 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQ----LFQECDKSQSGRLEGEEFEEF 46 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHH----HHHHH-SSSSSEBEHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHH----HHHHhcccCCCCccHHHHHHH
Confidence 46889999999999 88788777555 689999999999999998764
No 60
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.02 E-value=5.8e-06 Score=50.79 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHH
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 89 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 89 (92)
...++..+|..-|.+.+|+|+..|+++++..-+.....+. +.+ -+..|+..|.+++|.|+|+||.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqea-mee-SkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEA-MEE-SKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHH-Hhh-hhhheeeeCCCCCCceehhhhh
Confidence 3467888999999999999999999998876422211111 010 1225788899999999999985
No 61
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.02 E-value=2.1e-06 Score=47.00 Aligned_cols=61 Identities=15% Similarity=0.323 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 24 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
...+...|..+|.++||.++..|+..+...+ ...+. -+..++..+|.|+||.||..|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~----C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEH----CARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGG----GHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHH----HHHHHHHHcCCCCCCCCCHHHHccC
Confidence 3567788999999999999999998877654 22222 2344679999999999999999753
No 62
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.94 E-value=7.6e-05 Score=49.95 Aligned_cols=48 Identities=29% Similarity=0.569 Sum_probs=42.7
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
-|+|+||...-..+| .++.....+|+.||+.++|.++.+++.+++.+.
T Consensus 90 lisf~eF~afe~~lC---~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 90 LISFQEFRAFESVLC---APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred cccHHHHHHHHhhcc---CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 489999998888876 457788999999999999999999999999865
No 63
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.91 E-value=4e-05 Score=48.79 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=66.8
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 83 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i 83 (92)
.++|.+....++.++......+-++-+|++|+.+-||.++..+|.-+++..+|...- . +..+|+..+...+|+|
T Consensus 275 ~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l--~----v~~lf~~i~q~d~~ki 348 (412)
T KOG4666|consen 275 NGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVL--R----VPVLFPSIEQKDDPKI 348 (412)
T ss_pred cccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCccee--e----ccccchhhhcccCcce
Confidence 578999999999998666677888999999999999999999999999987554221 1 2225788888889999
Q ss_pred CHHHHHhh
Q 034516 84 TLGDFIKV 91 (92)
Q Consensus 84 ~~~eF~~~ 91 (92)
++++|...
T Consensus 349 ~~~~f~~f 356 (412)
T KOG4666|consen 349 YASNFRKF 356 (412)
T ss_pred eHHHHHHH
Confidence 99999864
No 64
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.91 E-value=8.3e-05 Score=34.94 Aligned_cols=49 Identities=16% Similarity=0.338 Sum_probs=36.5
Q ss_pred ccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 5 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
++|.|-..+++.+- -.-.+.-+..+|+.+|++++|++..+|+..+++.+
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 56777777776642 34455678889999999999999999999998876
No 65
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.87 E-value=7e-05 Score=35.45 Aligned_cols=47 Identities=19% Similarity=0.451 Sum_probs=39.6
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 51 (92)
.|++++|..++..+. ...+.+.+..+|+.+|.+++|.|+.+++..++
T Consensus 16 ~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 16 TISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred cCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 589999999988764 34566788899999999999999999998765
No 66
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.84 E-value=5.3e-05 Score=56.14 Aligned_cols=63 Identities=24% Similarity=0.542 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCC-------HHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS-------DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.++..+|+.||++.+|.+++.+|+-.|+.+ |.+++ +.+++. ++...|++.+|+|+..+|+..|
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~----~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEE----ILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHH----HHHhcCCCCcCcccHHHHHHHH
Confidence 456779999999999999999999999999 87663 234444 5689999999999999998753
No 67
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.84 E-value=6.4e-05 Score=39.35 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=41.2
Q ss_pred cccHHHHHHHHcccccCCC----HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAKAS----MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~----~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+.+++..++....+... ..+.+..+|+.+|.+++|.|+.++|..++..+
T Consensus 26 ~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 26 TLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 6889999988864322222 26889999999999999999999999988765
No 68
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.82 E-value=3.2e-05 Score=30.95 Aligned_cols=27 Identities=26% Similarity=0.738 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q 034516 27 VQLIFKVYDSDCNGKVSFNDILEVLRD 53 (92)
Q Consensus 27 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 53 (92)
++.+|..+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 577899999999999999999998875
No 69
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.81 E-value=1.7e-05 Score=33.48 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.0
Q ss_pred HHHHHHhCCCCCCccCHHHHHhhC
Q 034516 69 TQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 69 ~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..+|+.+|.+++|.|+.+||.+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHH
Confidence 457899999999999999998763
No 70
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.80 E-value=0.00012 Score=38.48 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=42.5
Q ss_pred cccHHHHHHHHccccc----CCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSA----KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~----~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+.+||..++....| .......+..+++.+|.|++|.|+.+||..++..+
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5899999999877532 23445788999999999999999999999988876
No 71
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.78 E-value=0.00012 Score=38.65 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=41.8
Q ss_pred cccHHHHHHHHcccc----cCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFS----AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+..|+..++.... ........+..+++.+|.+++|.|+.+||..++..+
T Consensus 28 ~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 28 KLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred EECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 489999999886522 123355689999999999999999999999999877
No 72
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.75 E-value=0.0001 Score=38.77 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=40.9
Q ss_pred cccHHHHHHHHcccccCCCHH-HHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAKASMQ-QKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~-~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+..++..++....+..-.. +.+..+++..|.|++|.|+++||..++..+
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 588899999887722221122 679999999999999999999999998876
No 73
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.68 E-value=0.00024 Score=37.23 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.6
Q ss_pred cccHHHHHHHHccc--ccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVF--SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+.+||..++... .......+.+..+++..|.+++|.|+.+||..++..+
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 68889999998632 2233466789999999999999999999999888776
No 74
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.0011 Score=43.86 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=58.7
Q ss_pred CcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034516 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
.++++++|+..+..+ +++-++.-|..+|+..+|.|+..+|..++-...+.+... ...+..++-+.++.. +-.
T Consensus 301 ~kLs~deF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~--k~~~lkrvk~kf~~~-~~g 372 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKK--KHKYLKRVKEKFKDD-GKG 372 (489)
T ss_pred ccccHHHHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHh--HHHHHHHHHHhccCC-CCC
Confidence 378999999998775 345667789999999999999999999998873333332 233344455666544 557
Q ss_pred cCHHHHHh
Q 034516 83 LTLGDFIK 90 (92)
Q Consensus 83 i~~~eF~~ 90 (92)
||++||.+
T Consensus 373 ISl~Ef~~ 380 (489)
T KOG2643|consen 373 ISLQEFKA 380 (489)
T ss_pred cCHHHHHH
Confidence 99999875
No 75
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.57 E-value=0.00039 Score=36.41 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=41.7
Q ss_pred cccHHHHHHHHcc----cccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSV----FSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~----~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+..++..++.. +......++.+..+++..|++++|.|+.++|..++..+
T Consensus 26 ~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 26 KLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred EECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3888999988876 22234556779999999999999999999999888765
No 76
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.52 E-value=0.0006 Score=33.24 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=40.0
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+.+++..++... +-+.+.+..+|+.+|.+++|.|+.+++..++..+
T Consensus 15 ~i~~~el~~~l~~~---g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 15 LISGDEARPFLGKS---GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred cCcHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 58889998888664 2355678999999999999999999999988765
No 77
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.52 E-value=0.00055 Score=35.95 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=41.2
Q ss_pred cccHHHHHHHHcc-c---ccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSV-F---SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~-~---~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+..++..++.. + .+.....+.+..+|+.+|++++|.|+.++|..++..+
T Consensus 27 ~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 27 KLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred eECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4888999888864 2 1123456789999999999999999999999988876
No 78
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.49 E-value=0.00053 Score=35.62 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=40.7
Q ss_pred cccHHHHHHHHcccccC----CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAK----ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~----~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+..++..++....+. ......+..++..+|.+++|.|+.++|..++..+
T Consensus 26 ~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 26 TLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred cCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 58899999888652211 1236789999999999999999999999988765
No 79
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.48 E-value=0.00056 Score=36.08 Aligned_cols=51 Identities=22% Similarity=0.324 Sum_probs=41.2
Q ss_pred cccHHHHHHHHcccc----cCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFS----AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+..++..++.... ......+.+..+++.+|.+++|.|+.++|..++..+
T Consensus 26 ~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 26 TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 588899998876421 123456789999999999999999999999988876
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.45 E-value=0.00054 Score=42.37 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=65.1
Q ss_pred ccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHH----HhhCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034516 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLR----DLSGSFMSDEQREQVLTQVFKDAGYTRD 80 (92)
Q Consensus 5 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (92)
++-.||+.++..-...+....-++.+.+.+|++++..++..+|....- ..-+..+.+...+.....+-...|.|.+
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 455789988887655666777889999999999999999999876432 1114455555555556666678899999
Q ss_pred CccCHHHHHhh
Q 034516 81 SYLTLGDFIKV 91 (92)
Q Consensus 81 g~i~~~eF~~~ 91 (92)
|.++++|....
T Consensus 296 GivTaeELe~y 306 (362)
T KOG4251|consen 296 GIVTAEELEDY 306 (362)
T ss_pred cceeHHHHHhh
Confidence 99999997653
No 81
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.43 E-value=0.00099 Score=35.13 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=41.2
Q ss_pred cccHHHHHHHHccc----ccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVF----SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~----~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
+++-.||..++..- .+.......+..+++..|.|+||.|+..||...+..+
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57788888887542 3344556789999999999999999999999988876
No 82
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.41 E-value=0.0013 Score=43.77 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCH-------------------------------HHH-------
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD-------------------------------EQR------- 64 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~-------------------------------~~~------- 64 (92)
....+...|+.+|.++.|+|+...+...+..++|.+++= ++.
T Consensus 462 ~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 462 HRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 345677899999999999999999999999886654440 000
Q ss_pred ----HHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 65 ----EQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 65 ----~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+.-++.+|...|.+++|.||.+||.++
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a 572 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTA 572 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHH
Confidence 112334788999999999999999875
No 83
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.27 E-value=0.0015 Score=35.97 Aligned_cols=43 Identities=14% Similarity=0.310 Sum_probs=34.8
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l 51 (92)
.|+.+|...+. + ...+..+...|+.+|.|++|.||.+|+...+
T Consensus 64 ~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 64 KLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred cCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 46777777655 1 3446677889999999999999999999998
No 84
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.27 E-value=0.0014 Score=34.63 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=40.2
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|+.+++...+... +-..+.+..+|+.+|.+++|.|+.++|..++..+
T Consensus 26 ~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 26 TVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred eEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 58888888888663 3445678999999999999999999999988865
No 85
>PF14658 EF-hand_9: EF-hand domain
Probab=97.26 E-value=0.0019 Score=32.06 Aligned_cols=50 Identities=20% Similarity=0.512 Sum_probs=40.3
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCN-GKVSFNDILEVLRD 53 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~i~~~el~~~l~~ 53 (92)
.|...+...++.......+.+.+++.+.+.+|+++. |.|+.+.|..+|+.
T Consensus 14 ~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 14 RVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred eEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 355566666666655446778899999999999999 99999999999975
No 86
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.24 E-value=0.0013 Score=43.69 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=59.7
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHHHhCCCC
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS----GSFMSDEQREQVLTQVFKDAGYTR 79 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~ 79 (92)
+++|.+|+-.+-.+- ..+....++-.|+..|.+++|.++..|++-+..... ......--.+..+..++.......
T Consensus 331 rmdykdFv~FilA~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~ 409 (493)
T KOG2562|consen 331 RMDYKDFVDFILAEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPED 409 (493)
T ss_pred cccHHHHHHHHHHhc-cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccC
Confidence 478899988765543 344556788999999999999999999988766431 111222222344444566666666
Q ss_pred CCccCHHHHHh
Q 034516 80 DSYLTLGDFIK 90 (92)
Q Consensus 80 ~g~i~~~eF~~ 90 (92)
.++|+.++|..
T Consensus 410 ~~kItLqDlk~ 420 (493)
T KOG2562|consen 410 ENKITLQDLKG 420 (493)
T ss_pred CCceeHHHHhh
Confidence 88999999875
No 87
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.19 E-value=0.00054 Score=27.09 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.1
Q ss_pred HHHHHHhCCCCCCccCHHHHHhhC
Q 034516 69 TQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 69 ~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
..+++.+|.+++|.|++.+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 346799999999999999998753
No 88
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.10 E-value=0.0026 Score=32.67 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
++..+|..+-. +.+.++.++|.++|..-=+. ..+...+..++...-........+.+++++|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~f 66 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRF 66 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHH
Confidence 36788999954 88999999999999865232 4578887777655433332234588999999874
No 89
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=97.09 E-value=0.00021 Score=45.67 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
.+...|..+|+|+++.|...|++.+-+.++ .....++-..++++..|.|+|.+||+.|+..+|
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~----k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLL----KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHH----hhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 467789999999999999999888766652 122344556668899999999999999998754
No 90
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=96.60 E-value=0.0072 Score=38.71 Aligned_cols=63 Identities=14% Similarity=0.303 Sum_probs=46.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh----hCCCCCHHHHHH-------HHHHHHHHhCCCCCCccCHHHHHh
Q 034516 28 QLIFKVYDSDCNGKVSFNDILEVLRDL----SGSFMSDEQREQ-------VLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 28 ~~~F~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~-------~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
+..|.++|.+++|+++-.|+...+..- ......++.+++ +-+.+++..|.|.+..||.+||++
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~ 320 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLN 320 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHh
Confidence 346778899999999999998877632 233344444433 344578899999999999999986
No 91
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.56 E-value=0.011 Score=41.01 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=56.1
Q ss_pred ccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccC
Q 034516 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLT 84 (92)
Q Consensus 5 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 84 (92)
|++++|...+..+.|-.-...-...+|+.+|.+.+|.++..++...+..+ ... +.++. +.-+++.+|.+++ ...
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l-~~~---~~~ek-~~l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSIL-KAG---DALEK-LKLLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHH-Hhh---hHHHH-HHHHHhhccCCcc-ccc
Confidence 66778888887776555455567889999999999999999999999887 222 22222 4446788888877 655
Q ss_pred HHH
Q 034516 85 LGD 87 (92)
Q Consensus 85 ~~e 87 (92)
.++
T Consensus 609 ~e~ 611 (671)
T KOG4347|consen 609 REE 611 (671)
T ss_pred ccc
Confidence 544
No 92
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.33 E-value=0.016 Score=31.31 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
+-+.+.+..+|.+.|.+++|+++.+||.-+++.+
T Consensus 39 ~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 39 GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4456889999999999999999999999998865
No 93
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0063 Score=43.18 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
..-+++.+|..+|+...|+++...-+.+|-.. ++++..+.. +|...|.|+||+++-+||.-.
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~----IW~LsDvd~DGkL~~dEfila 254 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAH----IWTLSDVDGDGKLSADEFILA 254 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhh----heeeeccCCCCcccHHHHHHH
Confidence 44578889999999999999999988888765 567766555 578999999999999999753
No 94
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.27 E-value=0.031 Score=38.07 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=33.9
Q ss_pred hhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 33 VYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 33 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.-|..+||-|+.+||+..-..+ ..+ +.+...+|..+|..++|.+|++++..+
T Consensus 82 iaD~tKDglisf~eF~afe~~l-C~p------Dal~~~aFqlFDr~~~~~vs~~~~~~i 133 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAFESVL-CAP------DALFEVAFQLFDRLGNGEVSFEDVADI 133 (694)
T ss_pred hhhhcccccccHHHHHHHHhhc-cCc------hHHHHHHHHHhcccCCCceehHHHHHH
Confidence 3477778888888877654443 322 222333678888888888888887654
No 95
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=0.019 Score=39.00 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
..++.+-..|+-.-+|-.|+|+-.--++++.+. +++-.++.. +|...|.+.||-++..||+..
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS---klpi~ELsh----IWeLsD~d~DGALtL~EFcAA 290 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEELSH----IWELSDVDRDGALTLSEFCAA 290 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhc---cCchHHHHH----HHhhcccCccccccHHHHHhh
Confidence 345667778999999999999999888888775 667677666 579999999999999999875
No 96
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.08 E-value=0.014 Score=40.15 Aligned_cols=63 Identities=16% Similarity=0.348 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
...+.-|..+|.++.|+++.+++..+++.. +.+.+++.+.+. ..+.|.+.+|.++..||.+++
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~----l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEE----LQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHH----HHHHHHhhcceeeHHHHHHHH
Confidence 455678999999999999999999999998 778888887764 477787888999999988753
No 97
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=95.83 E-value=0.027 Score=37.24 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 27 VQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 27 ~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
...+|+.+|.|++|.|+.+||..++...
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4678999999999999999999998764
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=95.76 E-value=0.27 Score=34.43 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=58.8
Q ss_pred cccHHHHHHHHccccc-CCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhC---CC
Q 034516 4 GLNFKDFVAFLSVFSA-KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAG---YT 78 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d---~~ 78 (92)
.++|.+|......+.. ...+..++..+|..+-. +.+.++.++|..+|...=+. ..+.+....+++.++.... ..
T Consensus 16 ~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~ 94 (599)
T PLN02952 16 SYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRY 94 (599)
T ss_pred CcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccc
Confidence 5789999877766532 23467899999999954 44689999999999986232 3556666666655444322 11
Q ss_pred CCCccCHHHHHhh
Q 034516 79 RDSYLTLGDFIKV 91 (92)
Q Consensus 79 ~~g~i~~~eF~~~ 91 (92)
+.+.++++.|...
T Consensus 95 ~~~~l~~~~F~~~ 107 (599)
T PLN02952 95 TRHGLNLDDFFHF 107 (599)
T ss_pred cccCcCHHHHHHH
Confidence 2345888888764
No 99
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.56 E-value=0.035 Score=42.41 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=43.6
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 30 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
-|+-+|+|+.|-|+..+|.+++.. ....++.+++-++ .-+..+.+...+|++|+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfll----scae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFLL----SCAEADENDMFDYEDFVD 4116 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHHH----HhhccCccccccHHHHHH
Confidence 588899999999999999999987 4567777766543 444456667899999985
No 100
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.48 E-value=0.15 Score=26.94 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS------GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 24 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~------~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.++++.+|+.+ .|++|.++...+...++.+. |...+---++..+..+|.... ....|+-++|...
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~w 72 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDW 72 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHH
Confidence 47899999998 78999999999999888552 332222225555666788752 4457999998864
No 101
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=95.28 E-value=0.036 Score=31.91 Aligned_cols=59 Identities=24% Similarity=0.457 Sum_probs=42.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 28 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
+++...|-.|+.|.++.++|.+++..+ .. ..+.+++... +|+-+|-++++.|--++...
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~-sE-~APrdlK~~Y--AFkIYDfd~D~~i~~~DL~~ 132 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVF-SE-MAPRDLKAKY--AFKIYDFDGDEFIGHDDLEK 132 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHH-Hh-hChHHhhhhh--eeEEeecCCCCcccHHHHHH
Confidence 456677779999999999999999876 32 3333444332 67888889988887766654
No 102
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.94 E-value=0.046 Score=35.58 Aligned_cols=59 Identities=10% Similarity=0.247 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 24 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.+.+...|..+|.+.+|.++..|+..+-..- .+.-++.+|...|...+|.||-.|+...
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk---------nE~CikpFfnsCD~~kDg~iS~~EWC~C 307 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELDK---------NEACIKPFFNSCDTYKDGSISTNEWCYC 307 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhccC---------chhHHHHHHhhhcccccCccccchhhhh
Confidence 3678899999999999999999988665331 1233555789999999999999888653
No 103
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.81 E-value=0.16 Score=36.11 Aligned_cols=65 Identities=25% Similarity=0.523 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.....+..+|+..|++++|.++..+..++++.+ ...+....... ++++.+..+++++..++|+..
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~----~f~e~~~~~~~k~~~~~~~~~ 197 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARR----LFKESDNSQTGKLEEEEFVKF 197 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHH----HHHHHHhhccceehHHHHHHH
Confidence 344567788999999999999999999999998 66666665444 467777788889988888753
No 104
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.77 E-value=0.2 Score=29.58 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCC--------------------------------------------
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS-------------------------------------------- 60 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~-------------------------------------------- 60 (92)
..++.-...||+|+||.|...|--..++.+ |.++-
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraL-Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRAL-GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHh-CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 456777788999999999999988877766 43111
Q ss_pred -----HHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 61 -----DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 61 -----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
...+.+..+++|..++..+.+.+|+.|..+++
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~ 122 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRML 122 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 00112235667888888888899999987763
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.40 E-value=0.16 Score=29.31 Aligned_cols=58 Identities=10% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHh--hCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhhC
Q 034516 31 FKVYDSDCNGKVSFNDILEVLRDL--SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVL 92 (92)
Q Consensus 31 F~~~D~~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~l 92 (92)
|..|.+.+...++...|..+++.. ++..++...++- +|..+...+...|+|++|..+|
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDi----iF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDI----IFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHH----HHHHHT-SS-SEEEHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHH----HHHHhhcCCCcccCHHHHHHHH
Confidence 333456677789999999999976 123456665444 5677665556679999998764
No 106
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=94.38 E-value=0.071 Score=35.88 Aligned_cols=52 Identities=15% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH----HhCCCCCCccCHHHHHh
Q 034516 31 FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFK----DAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 31 F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~----~~d~~~~g~i~~~eF~~ 90 (92)
|--+|+|++|.|+.++++..--. .++.. +++++|. ..-...+|+++|++|+-
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~----tlt~~----ivdRIFs~v~r~~~~~~eGrmdykdFv~ 339 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDH----TLTER----IVDRIFSQVPRGFTVKVEGRMDYKDFVD 339 (493)
T ss_pred HhhhccccccccCHHHHHHHhcc----chhhH----HHHHHHhhccccceeeecCcccHHHHHH
Confidence 55668888999998888765432 22332 2444455 33445567788887764
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.33 E-value=0.22 Score=36.21 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD-EQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
++++..|+.+++...|..+.+++...+-.+ |.+..+ +.+.+-+..+....|.+..|.+++.+|...
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDD 813 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhH
Confidence 678999999999999999999999999998 887765 344443444556666666788999998764
No 108
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.30 E-value=0.11 Score=33.77 Aligned_cols=63 Identities=16% Similarity=0.208 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 24 QQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 24 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
.+.++-.|.+||.+++|.++..|....+.-+-+...+...++ -.|+.++.+.||.+.-++|.-
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq----~afk~f~v~eDg~~ge~~ls~ 320 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQ----YAFKRFSVAEDGISGEHILSL 320 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHH----HHHHhcccccccccchHHHHH
Confidence 377888999999999999999998888887745555665433 368999999999888777654
No 109
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.30 E-value=0.29 Score=34.56 Aligned_cols=79 Identities=19% Similarity=0.372 Sum_probs=57.4
Q ss_pred ccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHHhCCCCCC
Q 034516 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS---FMSDEQREQVLTQVFKDAGYTRDS 81 (92)
Q Consensus 5 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~g 81 (92)
|++++|. ....+.+.+++..|.++|. .+|.++.+++..++..+... ........++...++.+.|.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 8888888 3367889999999999998 99999999999988865321 112333444455567888887777
Q ss_pred ccCHHHHHh
Q 034516 82 YLTLGDFIK 90 (92)
Q Consensus 82 ~i~~~eF~~ 90 (92)
.+.++++..
T Consensus 77 y~~~~~~~~ 85 (646)
T KOG0039|consen 77 YITNEDLEI 85 (646)
T ss_pred eeeecchhH
Confidence 776665543
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=0.18 Score=34.52 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS 55 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~ 55 (92)
+-.++..+|++.|.+.||-++..||+.++..+.
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHLVV 295 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHLVV 295 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhhee
Confidence 447889999999999999999999999998663
No 111
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.12 E-value=1.5 Score=30.87 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHH
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQ 66 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 66 (92)
..+.++|.+.|.|.+|.++-.|+...-+...+.++...++..
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~ 236 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELED 236 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHH
Confidence 457889999999999999999999988877688888877766
No 112
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=0.33 Score=32.08 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHH
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQ 63 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~ 63 (92)
.++.+.++++|+.+|+.++|+|+..-++.++..+ ...+++..
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~a 346 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEPA 346 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCHH
Confidence 4466889999999999999999999999999988 64555443
No 113
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=91.00 E-value=1.4 Score=32.63 Aligned_cols=85 Identities=8% Similarity=0.205 Sum_probs=58.6
Q ss_pred CcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---------hCCCCCHHHHHHHHHHHHH
Q 034516 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL---------SGSFMSDEQREQVLTQVFK 73 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~---------~~~~~~~~~~~~~~~~~~~ 73 (92)
+..+++-|..++..++ ++.++..+|..+-.++.-+++.++|.+++..- +-....+..+..+++..=.
T Consensus 203 d~f~~e~f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp 278 (1189)
T KOG1265|consen 203 DDFTLEKFYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEP 278 (1189)
T ss_pred hhccHHHHHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCC
Confidence 4567778888888876 34568889999988888999999999999843 1234556666665533222
Q ss_pred HhCCCCCCccCHHHHHhh
Q 034516 74 DAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 74 ~~d~~~~g~i~~~eF~~~ 91 (92)
.-+....|.++-+.|+..
T Consensus 279 ~~~~a~~gqms~dgf~ry 296 (1189)
T KOG1265|consen 279 NSDNAEKGQMSTDGFVRY 296 (1189)
T ss_pred chhhhhccccchhhhHHH
Confidence 223334578888888753
No 114
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=90.99 E-value=2.5 Score=33.28 Aligned_cols=50 Identities=18% Similarity=0.364 Sum_probs=36.0
Q ss_pred cccHHHHHHHHcccc---c---CCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFS---A---KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRD 53 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~---~---~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 53 (92)
++++.+|-.-+..+- | .+.|+..++.+....||+.+|+|+..++..+|-.
T Consensus 2269 ~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2269 RLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 466777755443321 1 2345568999999999999999999999887754
No 115
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=89.50 E-value=0.49 Score=25.91 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHH
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILE 49 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~ 49 (92)
+++.-++..|+.+|.|++|.|+..|+..
T Consensus 85 ~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 85 PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3334567788999999999999999864
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.32 E-value=2.1 Score=31.28 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=41.7
Q ss_pred HHHHHhhc--CCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 28 QLIFKVYD--SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 28 ~~~F~~~D--~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.+.++.|+ +.+.|+|+...-+.++-+. +++..-+-+ +|...|.|.||+++..||.-.
T Consensus 16 ~K~~~qF~~Lkp~~gfitg~qArnfflqS---~LP~~VLaq----IWALsDldkDGrmdi~EfSIA 74 (1118)
T KOG1029|consen 16 QKHDAQFGQLKPGQGFITGDQARNFFLQS---GLPTPVLAQ----IWALSDLDKDGRMDIREFSIA 74 (1118)
T ss_pred HHHHHHHhccCCCCCccchHhhhhhHHhc---CCChHHHHH----HHHhhhcCccccchHHHHHHH
Confidence 33445554 4677999999988888765 556655444 579999999999999998643
No 117
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=89.08 E-value=0.52 Score=32.96 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
+.+..+|..||.|+||.++..|+........+.+.+..-... ..-.+..|.+++..|..
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~-------~t~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD-------STVKNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc-------cceecccceeehhhHHH
Confidence 567889999999999999999999999987333322111111 11123567788877764
No 118
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=87.05 E-value=1.1 Score=22.46 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 034516 24 QQKVQLIFKVYDSDCNGKVSFNDILEVL 51 (92)
Q Consensus 24 ~~~~~~~F~~~D~~~~g~i~~~el~~~l 51 (92)
.+.+..+|+.. .++.++|+..+|+..+
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 36789999999 7888999999999765
No 119
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=86.09 E-value=5.3 Score=23.75 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCC-----CCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF-----MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+++..+|..+++.+.+.++..|+..+++.- ... .....++..+ ++. +-.+.+|.++.|+-..+
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~n-r~~~D~~GW~a~~~EW~~--~y~-L~~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGN-RNANDPFGWFAAFFEWGA--LYI-LAKDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhc-cccCCcchhhhhhhHHHH--HHH-HHcCcCCcEeHHHHhhh
Confidence 689999999999999999999999999863 111 1123333333 222 22567889988876554
No 120
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=85.68 E-value=1.4 Score=16.74 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=13.2
Q ss_pred cCCCCCcccHHHHHHHHH
Q 034516 35 DSDCNGKVSFNDILEVLR 52 (92)
Q Consensus 35 D~~~~g~i~~~el~~~l~ 52 (92)
|.+++|.|+.-++..+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 678999999988765543
No 121
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.12 E-value=13 Score=26.52 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHHhC---CCCCCccCHHHHHhh
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS---FMSDEQREQVLTQVFKDAG---YTRDSYLTLGDFIKV 91 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~d---~~~~g~i~~~eF~~~ 91 (92)
..+..+++.+|..+-.++ +.++.++|..+|... .. ..+.+..+.+++.+..... .-..+.++.+.|...
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~y 99 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYY 99 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHH
Confidence 346678999999995444 899999999999986 42 2345566666554433321 122346999998764
No 122
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=83.21 E-value=5.3 Score=21.38 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=43.3
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
.|.=.+|..+++.+.+ .-.++++..+-..+-.++....+..++...+..+++..++++++..+.
T Consensus 19 GvP~~Dy~PLlALL~r-~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~ 82 (96)
T PF11829_consen 19 GVPPTDYVPLLALLRR-RLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVR 82 (96)
T ss_dssp -B-HHHHHHHHHHHTT-TS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHH
T ss_pred CCCCCccHHHHHHhcc-cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 4555667777777653 356677777777776666666789999999999978888888887754
No 123
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.16 E-value=1.3 Score=24.48 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 59 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 59 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
+++++. +.+|.++-.|..|.|.|.||+.
T Consensus 4 LtDeQF----drLW~e~Pvn~~GrLkY~eFL~ 31 (118)
T PF08976_consen 4 LTDEQF----DRLWNEMPVNAKGRLKYQEFLS 31 (118)
T ss_dssp --HHHH----HHHHTTS-B-TTS-EEHHHHHH
T ss_pred ccHHHh----hhhhhhCcCCccCCEeHHHHHH
Confidence 456664 4468999999999999999986
No 124
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=81.84 E-value=2.6 Score=23.64 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=21.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
-+..+...||++++|.|+.-.++.++..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 35678899999999999999999887654
No 125
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=81.80 E-value=9.3 Score=26.58 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=47.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCC-----CCCCccCHHHHHhhC
Q 034516 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGY-----TRDSYLTLGDFIKVL 92 (92)
Q Consensus 28 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~-----~~~g~i~~~eF~~~l 92 (92)
..+|..|-..+.++++.-.|.++|++. |..-++..++++++++ +.++. ...+.++.+.|..++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkst-GLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKST-GLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHc-CCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhh
Confidence 346888866778999999999999998 9888888888877665 44442 333468888887653
No 126
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.49 E-value=0.73 Score=33.70 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
....+..+|...|.+.+|.|+..+....+..- +++...+.. .|...|....|.+++.+|.-
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~---gl~~~~l~~----~w~l~d~~n~~~ls~~ef~~ 341 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLPF---GLSKPRLAH----VWLLADTQNTGTLSKDEFAL 341 (847)
T ss_pred HHHHHHHHHHhccccCCCcccccccccccccC---CCChhhhhh----hhhhcchhccCcccccccch
Confidence 33556779999999999999999998887663 455555444 57899999999999998764
No 127
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=80.25 E-value=8.2 Score=21.62 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=51.1
Q ss_pred CcccHHHHHHHHcccc------cCCCHHHHHHHHHHhhcCCC--CCcccHHHHHHHHHHhh------CCCCC-------H
Q 034516 3 DGLNFKDFVAFLSVFS------AKASMQQKVQLIFKVYDSDC--NGKVSFNDILEVLRDLS------GSFMS-------D 61 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~------~~~~~~~~~~~~F~~~D~~~--~g~i~~~el~~~l~~~~------~~~~~-------~ 61 (92)
+.|-|..|..+++... -.-=.-..+..+|+.+..+. +..++..++..++..+. .+... +
T Consensus 13 n~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~ 92 (127)
T PF09068_consen 13 NNIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVD 92 (127)
T ss_dssp TT-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----
T ss_pred hhHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHH
Confidence 4555666655554411 00112245677888876544 46799999999998774 01111 2
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 62 EQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 62 ~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
.-.+-.+.+++..+|..+.|.|+--.|..
T Consensus 93 ~a~~L~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 93 LAVDLLLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeehhHHHH
Confidence 44566777889999999999998777654
No 128
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=80.00 E-value=0.84 Score=27.78 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=36.7
Q ss_pred HHhhcC-CCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 31 FKVYDS-DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 31 F~~~D~-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
|-.+|. ..+|+++..|+.-+-..+ ++ ++.-+..+|...|.++||.|+.+|+...
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap~----ip---me~c~~~f~e~cd~~nd~~ial~ew~~c 247 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAPL----IP---MEHCTTRFFETCDLDNDKYIALDEWAGC 247 (259)
T ss_pred eccccCCCccccccccccccccCCc----cc---HHhhchhhhhcccCCCCCceeHHHhhcc
Confidence 444453 457999998876543322 22 2334556789999999999999998654
No 129
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.46 E-value=4.3 Score=27.42 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 37 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
.-+|+|+-..-+..|-. ..++..- +..+|+.+|.+.+|.++-+||.-
T Consensus 455 p~~gk~sg~~ak~~mv~---sklpnsv----lgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 455 PVNGKLSGRNAKKEMVK---SKLPNSV----LGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred ccCceeccchhHHHHHh---ccCchhH----HHhhhhhhcCCcccCcCHHHHHH
Confidence 34677777666655543 3556655 44468999999999999999963
No 130
>PLN02228 Phosphoinositide phospholipase C
Probab=77.22 E-value=21 Score=25.32 Aligned_cols=65 Identities=18% Similarity=0.430 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCC----CCCccCHHHHHhh
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYT----RDSYLTLGDFIKV 91 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~ 91 (92)
..+..++..+|..+-. ++.++.++|..+|...=+.. .+.+...++ +..+... ..|.++.+.|...
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~gF~~y 89 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDI----FHSVKHHNVFHHHGLVHLNAFYRY 89 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHH----HHHhccchhhcccCccCHHHHHHH
Confidence 4467889999998853 35899999999998862222 333444443 3444321 2357999998764
No 131
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=74.78 E-value=6.7 Score=17.68 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHhh-cCCC-CCcccHHHHHHHHHHh
Q 034516 25 QKVQLIFKVY-DSDC-NGKVSFNDILEVLRDL 54 (92)
Q Consensus 25 ~~~~~~F~~~-D~~~-~g~i~~~el~~~l~~~ 54 (92)
..+..+|+.| .+++ ...++..|++..+..-
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 3566788888 3444 4689999999998864
No 132
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=74.19 E-value=2.5 Score=30.03 Aligned_cols=42 Identities=26% Similarity=0.501 Sum_probs=36.9
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHH
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDI 47 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el 47 (92)
.++|.+++..+..+. .+...++++..|+++|++++ ....++.
T Consensus 571 ~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 571 LLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred eeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 689999999999887 67777899999999999999 8888776
No 133
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=73.07 E-value=9.3 Score=18.57 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=19.9
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHH
Q 034516 41 KVSFNDILEVLRDLSGSFMSDEQREQV 67 (92)
Q Consensus 41 ~i~~~el~~~l~~~~~~~~~~~~~~~~ 67 (92)
.|+.++|..+|+.. ...++..+++..
T Consensus 29 ~it~~DF~~Al~~~-kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKV-KPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTC-GGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 47888888888887 778888887764
No 134
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=72.50 E-value=7.3 Score=20.48 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=5.0
Q ss_pred CCcccHHHHHHH
Q 034516 39 NGKVSFNDILEV 50 (92)
Q Consensus 39 ~g~i~~~el~~~ 50 (92)
||.++..|...+
T Consensus 13 DG~v~~~E~~~i 24 (104)
T cd07313 13 DGEYDEEERAAI 24 (104)
T ss_pred cCCCCHHHHHHH
Confidence 344444444333
No 135
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=72.01 E-value=3.9 Score=20.15 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=19.9
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q 034516 32 KVYDSDCNGKVSFNDILEVLRD 53 (92)
Q Consensus 32 ~~~D~~~~g~i~~~el~~~l~~ 53 (92)
++||+....+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999999985
No 136
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=71.76 E-value=8.5 Score=19.29 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=31.3
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhC
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG 56 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~ 56 (92)
.++|...+..+.... + .+.+..+...|+.=..+.|+.++|.+.++.+.|
T Consensus 8 ~~~F~~L~~~l~~~l---~-~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 8 WMPFPMLFSALSKHL---P-PSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred cccHHHHHHHHHHHC---C-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455555555554432 2 234555555555556799999999999998744
No 137
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.59 E-value=4.9 Score=31.73 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
...-+....++..+|++..|+|...++.+.++.+
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L 1446 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSL 1446 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhc
Confidence 4455789999999999999999999999999988
No 138
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.44 E-value=14 Score=19.94 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
..+..-|..+-. +|.++...|...+ |-+-+.+...++.+.+-+.-... .+.|+.+|+..
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~e 88 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIK-GDSITKDELKE 88 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHH
Confidence 345566776655 8999999999887 55556666666666666655555 45788887654
No 139
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.38 E-value=1.3 Score=26.39 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQ 70 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (92)
+..+.++.+|.-||+..--..+-+++.+.+..- +..-....++..+.+
T Consensus 50 ~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~-~IIRnr~KI~Avi~N 97 (179)
T TIGR00624 50 RKRENYRRAFSGFDIVKVARMTDADVERLLQDD-GIIRNRGKIEATIAN 97 (179)
T ss_pred HhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-cchhhHHHHHHHHHH
Confidence 355788999999999988888888888888754 443344555555553
No 140
>PHA02335 hypothetical protein
Probab=69.98 E-value=11 Score=20.64 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCC
Q 034516 2 VDGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNG 40 (92)
Q Consensus 2 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g 40 (92)
+++||.++|..-++++ .-++..|+.|.+.++-
T Consensus 22 p~sVt~ddf~~DlkRi-------~yIkrllKRy~~~~~~ 53 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF-------KYIKRLFKRYLNTGEL 53 (118)
T ss_pred cccccHHHHHHHHHHH-------HHHHHHHHhhcCCCCh
Confidence 4678888888887776 3567778887765544
No 141
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.83 E-value=16 Score=20.61 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034516 37 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
+..|.|+.+|-+.+|-. ..++..+++....+.+|+--|+...|.
T Consensus 51 ~~~~~iTlqEa~qILnV--~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNV--KEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred cccccccHHHHhhHhCC--CCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 44578999998888754 457778888888888999888876664
No 142
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=69.72 E-value=5.5 Score=26.26 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 21 ASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 21 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
..+..-.+..|+.+|.|+|-.|+..|+...|...
T Consensus 366 s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 366 SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred ccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 4566677889999999999999999999988654
No 143
>PLN02223 phosphoinositide phospholipase C
Probab=69.71 E-value=37 Score=24.04 Aligned_cols=69 Identities=7% Similarity=-0.026 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhh---C-CCCCHHHHHHHHHHHHHHhC----CCCCCccCHHHHHhh
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLS---G-SFMSDEQREQVLTQVFKDAG----YTRDSYLTLGDFIKV 91 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~---~-~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~eF~~~ 91 (92)
.+-+.++.+|..+- +++|.++.+.+.+++.-+. + ...+.++.+.+++.++.... ....+.++.+.|...
T Consensus 13 ~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 13 NQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 35578999999984 7789999999999994331 2 35567777777776655432 112245899988764
No 144
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=68.10 E-value=0.8 Score=27.46 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQ 70 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (92)
...+.++.+|.-||+..--..+-+++...+..- +..-....++..+++
T Consensus 51 ~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~-~IIRnr~KI~Avi~N 98 (187)
T PRK10353 51 KKRENYRACFHQFDPVKVAAMQEEDVERLVQDA-GIIRHRGKIQAIIGN 98 (187)
T ss_pred HHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-hhHHhHHHHHHHHHH
Confidence 355789999999999888888888888887754 433334455555544
No 145
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=66.88 E-value=1.9 Score=25.86 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.3
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.|.++-|...++.+. --...+.++.+|..||+++--..+.+++.+.|...
T Consensus 35 ~l~Le~fQAGLSW~t-VL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~ 84 (188)
T COG2818 35 LLCLEGFQAGLSWLT-VLKKREAFREAFHGFDPEKVAAMTEEDVERLLADA 84 (188)
T ss_pred HHHHHHHhccchHHH-HHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc
Confidence 455555655544421 12355789999999999999999999999988865
No 146
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=66.87 E-value=9.9 Score=21.74 Aligned_cols=36 Identities=11% Similarity=0.321 Sum_probs=23.9
Q ss_pred CcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCC
Q 034516 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDC 38 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~ 38 (92)
+.|+|+.|...|....-..-+++-.+.+|..|-...
T Consensus 47 ~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 47 EPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp TEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred CCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 379999999999886656678889999999985544
No 147
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=65.83 E-value=20 Score=19.59 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=18.1
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q 034516 32 KVYDSDCNGKVSFNDILEVLRD 53 (92)
Q Consensus 32 ~~~D~~~~g~i~~~el~~~l~~ 53 (92)
++||+....+|+.++++..++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4678888889999998888874
No 148
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=64.65 E-value=18 Score=22.89 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=33.8
Q ss_pred CcccHHHHHHHHH----HhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 40 GKVSFNDILEVLR----DLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 40 g~i~~~el~~~l~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
..++...+..+|. ..+|.+++++.+.-+.++++..-....+..|+|..|..
T Consensus 177 ~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 177 PKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 4678888888876 22488999999888877777655544567899999964
No 149
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=63.10 E-value=24 Score=19.44 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 29 LIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 29 ~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
.+|-+++..++...+..+++.++..+ |....++.++.++
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~vi 43 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLVL 43 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHHH
Confidence 45566677778888899999999998 8888888766654
No 150
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=61.55 E-value=11 Score=25.05 Aligned_cols=65 Identities=11% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.+++..|...=.+..+......+..+-..+ ...+.+. -+.-+.++|..+|.|.++.++..|...+
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~-d~s~~p~-CKds~gWMFnklD~N~Dl~Ld~sEl~~I 275 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGF-DTSILPI-CKDSLGWMFNKLDTNYDLLLDQSELRAI 275 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhccccccc-ccccCcc-hhhhhhhhhhccccccccccCHHHhhhh
Confidence 356667776645554444444433332222 1111111 1222556899999999999999987654
No 151
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=61.54 E-value=26 Score=20.96 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.7
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
-|.+|++..+++...++.- +..++.+.+++++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~vV 59 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA-YKWVTRELLEAVV 59 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHHH
Confidence 5889999999999998865 5678888888765
No 152
>PLN02222 phosphoinositide phospholipase C 2
Probab=61.09 E-value=59 Score=23.33 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+..++..+|..+-. ++.++.++|..+|...=+. ..+.+..+.+++.. . .....+.++++.|...
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~--~~~~~~~~~~~gF~~y 87 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-S--SLLHRNGLHLDAFFKY 87 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-h--hhhhccCcCHHHHHHH
Confidence 34589999999853 4799999999999986232 23555556655432 1 1123457899998764
No 153
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=60.80 E-value=66 Score=23.80 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=46.2
Q ss_pred cccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034516 4 GLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSY 82 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~ 82 (92)
++...+|........ ..+ ++...|..+-.+ .+.++.+++..++...-+ ...+....+++++..-..-.....+.
T Consensus 188 k~~~~~~~~~~~~~~--~rp--ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~ 262 (746)
T KOG0169|consen 188 KLEEEEFVKFRKELT--KRP--EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGL 262 (746)
T ss_pred eehHHHHHHHHHhhc--cCc--hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccce
Confidence 345555555554443 222 555566655433 788888888888887622 34455555665543322222334456
Q ss_pred cCHHHHHhh
Q 034516 83 LTLGDFIKV 91 (92)
Q Consensus 83 i~~~eF~~~ 91 (92)
++.+.|.+.
T Consensus 263 l~ldgF~~y 271 (746)
T KOG0169|consen 263 LSLDGFTRY 271 (746)
T ss_pred ecHHHHHHH
Confidence 888887664
No 154
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=59.00 E-value=29 Score=19.15 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=29.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 30 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
+|-+.-..++..++.++++.++... |..+.+..+..++
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~Aa-GveVd~~~~~l~~ 45 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAV-NADVEDDVLDNFF 45 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHHH
Confidence 4445555677789999999999998 8888887766644
No 155
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=58.94 E-value=26 Score=20.97 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=21.7
Q ss_pred cCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 35 DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 35 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
..+.+|++..+++...+..- +..++.+++++++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~-~~~~t~~~i~~vV 58 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFK-GLWVTEEDIREVV 58 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 46889999999999999886 7778888888865
No 156
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=58.67 E-value=23 Score=17.86 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=33.8
Q ss_pred HcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 14 LSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 14 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
+.++.. +..-+.++.-|... =+.|+..|+..+-+.+...+++.++++.++
T Consensus 6 i~~Lh~-G~~~e~vk~~F~~~----~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LC 55 (71)
T PF04282_consen 6 IKRLHE-GEDPEEVKEEFKKL----FSDVSASEISAAEQELIQEGMPVEEIQKLC 55 (71)
T ss_pred HHHHhC-CCCHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 344442 34446777777632 256888999998888877778888877654
No 157
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=58.23 E-value=45 Score=21.90 Aligned_cols=42 Identities=19% Similarity=0.420 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.|.|+.+|-...++.. ....++..++. +++.++ ||-+||..+
T Consensus 300 ~G~itReeal~~v~~~-d~~~~~~~~~~----~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEY-DGEFPKEDLEY----FLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHh-cccccHHHHHH----HHHHhC------CCHHHHHHH
Confidence 5778887777777765 44444444444 446655 677777665
No 158
>PLN02952 phosphoinositide phospholipase C
Probab=57.72 E-value=23 Score=25.36 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=33.0
Q ss_pred CCCcccHHHHHHHHHHhhCC--CCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 38 CNGKVSFNDILEVLRDLSGS--FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
+.|.++.+++..+.+.+ .. ..+..++.. +|..+..+ .+.++.++|...
T Consensus 13 ~~g~l~f~~f~~f~~~~-k~~~~~~r~ei~~----lf~~~~~~-~~~mt~~~l~~F 62 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKF-KITEAEPPDDVKD----VFCKFSVG-GGHMGADQLRRF 62 (599)
T ss_pred cCCCcCHHHHHHHHHHh-ccccCCChHHHHH----HHHHHhCC-CCccCHHHHHHH
Confidence 46899999998888877 32 224555554 56776543 368999998764
No 159
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=56.94 E-value=18 Score=18.43 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=17.0
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
..|+|+++++..++... .++.+.+..++
T Consensus 18 ~~G~lT~~eI~~~L~~~---~~~~e~id~i~ 45 (82)
T PF03979_consen 18 KKGYLTYDEINDALPED---DLDPEQIDEIY 45 (82)
T ss_dssp HHSS-BHHHHHHH-S-S------HHHHHHHH
T ss_pred hcCcCCHHHHHHHcCcc---CCCHHHHHHHH
Confidence 46899999999998754 46677777654
No 160
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=56.87 E-value=45 Score=20.68 Aligned_cols=55 Identities=16% Similarity=0.380 Sum_probs=37.3
Q ss_pred ccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCC
Q 034516 5 LNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS 60 (92)
Q Consensus 5 i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~ 60 (92)
|++.|.-..|-.+- .+-..-.++.....-|.|.+|+|+..++.-+.+....-.+.
T Consensus 116 Idl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 116 IDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred ccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 55666555555442 12222456788889999999999999999998876433333
No 161
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=56.18 E-value=47 Score=23.64 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=35.8
Q ss_pred ccHHHHHHHHccccc--CCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 5 LNFKDFVAFLSVFSA--KASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 5 i~~~ef~~~~~~~~~--~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
|+..+....+..... +.-.+++++.+....+++.+|+|+.++|..++..+
T Consensus 35 v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 35 VTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred eehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 455555555544211 22346788999999999999999999999976654
No 162
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.22 E-value=11 Score=27.95 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
.....+|+..|..++|.|+..+-..++... .+....+-+ +|...|..+.|.++..+|...
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s---~L~~qvl~q----iws~~d~~~~g~l~~q~f~~~ 70 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS---GLPDQVLGQ----IWSLADSSGKGFLNRQGFYAA 70 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc---ccchhhhhc----cccccccccCCcccccccccc
Confidence 567788999999999999999977777654 455554333 578888888888888887653
No 163
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=54.09 E-value=22 Score=18.42 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 034516 43 SFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74 (92)
Q Consensus 43 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 74 (92)
+..|+...+..- ...++..+++..++.++..
T Consensus 2 ~k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~ 32 (94)
T TIGR00988 2 TKSELIERIATQ-QSHLPAKDVEDAVKTMLEH 32 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHH
Confidence 345555555442 3345555555555444443
No 164
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.82 E-value=30 Score=17.43 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 034516 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQ 70 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 70 (92)
.+-.|+.+-++..+.++ |.++++..++++...
T Consensus 35 ~NPpine~~iR~M~~qm-GqKpSe~kI~Qvm~~ 66 (71)
T COG3763 35 DNPPINEEMIRMMMAQM-GQKPSEKKINQVMRS 66 (71)
T ss_pred hCCCCCHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 34678899999999999 999999998886543
No 165
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=52.80 E-value=29 Score=17.17 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
+--|+.+-++..+.++ |.++++..++++.
T Consensus 29 NPpine~mir~M~~QM-G~kpSekqi~Q~m 57 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM-GRKPSEKQIKQMM 57 (64)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 4568889999999999 9999999988865
No 166
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=52.62 E-value=38 Score=18.54 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=28.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 30 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
+|-+.-..++..++.++++.+++.. |..+.+..+..++
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~Aa-GveVe~~~~~lf~ 43 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSV-GVEVDDEKLNKVI 43 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHHH
Confidence 3445556677789999999999998 8888877666544
No 167
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=51.78 E-value=35 Score=17.88 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHH
Q 034516 40 GKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 89 (92)
Q Consensus 40 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 89 (92)
--|...+|+..++.. ....+..+... +=.-+|...+|.||.=||-
T Consensus 21 ~IVPW~~F~~~L~~~-h~~~~~~~~~a----Lk~TiDlT~n~~iS~FeFd 65 (85)
T PF02761_consen 21 TIVPWSEFRQALQKV-HPISSGLEAMA----LKSTIDLTCNDYISNFEFD 65 (85)
T ss_dssp SEEEHHHHHHHHHHH-S--SSHHHHHH----HHHHH-TTSSSEEEHHHHH
T ss_pred eEeeHHHHHHHHHHh-cCCCchHHHHH----HHHHHhcccCCccchhhhH
Confidence 569999999999998 44333333222 2256788999999877763
No 168
>PRK00523 hypothetical protein; Provisional
Probab=49.91 E-value=35 Score=17.30 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
+-.|+.+-++..+.++ |.++++..++++.
T Consensus 37 NPpine~mir~M~~QM-GqKPSekki~Q~m 65 (72)
T PRK00523 37 NPPITENMIRAMYMQM-GRKPSESQIKQVM 65 (72)
T ss_pred CcCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 4568888899999999 9999999988865
No 169
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=48.16 E-value=36 Score=16.93 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHH
Q 034516 45 NDILEVLRDLSGSFMSDEQREQ 66 (92)
Q Consensus 45 ~el~~~l~~~~~~~~~~~~~~~ 66 (92)
+++.++++.. +..++..++..
T Consensus 17 ~~m~~if~l~-~~~vs~~el~a 37 (68)
T PF07308_consen 17 DDMIEIFALA-GFEVSKAELSA 37 (68)
T ss_pred HHHHHHHHHc-CCccCHHHHHH
Confidence 3444555554 55555555444
No 170
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=46.87 E-value=34 Score=17.20 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=13.5
Q ss_pred CCCCCcccHHHHHHHHHHh
Q 034516 36 SDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~ 54 (92)
.-..|++..+|+..++...
T Consensus 25 ~~~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 25 MLASGKLRGEEINSLLEAL 43 (75)
T ss_pred HHHcCcccHHHHHHHHHHh
Confidence 3456888888888877653
No 171
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=46.23 E-value=46 Score=19.57 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHcccc----cCCCHHHHHHHHHHhhc
Q 034516 2 VDGLNFKDFVAFLSVFS----AKASMQQKVQLIFKVYD 35 (92)
Q Consensus 2 ~~~i~~~ef~~~~~~~~----~~~~~~~~~~~~F~~~D 35 (92)
+..|+|++|...+..+. ...+.++.+..+.++.-
T Consensus 71 ~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 71 ARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLA 108 (180)
T ss_pred cccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Confidence 34789999955554432 24566777777777653
No 172
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=45.82 E-value=74 Score=19.89 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Q 034516 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAG 76 (92)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 76 (92)
-+++|.+....+...+..+ ..+++..++.++-++ ++.++
T Consensus 162 G~gegQVpL~kL~~~l~KL-p~~lt~~ev~~v~~R-L~AL~ 200 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKL-PRNLTKAEVDAVNKR-LRALG 200 (224)
T ss_pred cCCCCceeHHHHHHHHHhC-CccCCHHHHHHHHHH-HHHhc
Confidence 3789999999999999999 889999998885444 35555
No 173
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=44.85 E-value=64 Score=18.93 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=14.6
Q ss_pred cHHHHHHHHcccccCCCHHHHHHHHHHhhc
Q 034516 6 NFKDFVAFLSVFSAKASMQQKVQLIFKVYD 35 (92)
Q Consensus 6 ~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D 35 (92)
|-+||+..+..... .-++++.+.+.+-|+
T Consensus 2 ~k~efL~~L~~~L~-~lp~~e~~e~l~~Y~ 30 (181)
T PF08006_consen 2 NKNEFLNELEKYLK-KLPEEEREEILEYYE 30 (181)
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 45677777655432 234444444444443
No 174
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=43.74 E-value=52 Score=17.52 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=7.7
Q ss_pred CCccCHHHHHh
Q 034516 80 DSYLTLGDFIK 90 (92)
Q Consensus 80 ~g~i~~~eF~~ 90 (92)
+|.|+-|||..
T Consensus 37 ~~~i~~EeF~~ 47 (92)
T smart00549 37 NGTITAEEFTS 47 (92)
T ss_pred hCCCCHHHHHH
Confidence 46788888764
No 175
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=42.82 E-value=51 Score=17.16 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 034516 64 REQVLTQVFKDA 75 (92)
Q Consensus 64 ~~~~~~~~~~~~ 75 (92)
...++..+|.-+
T Consensus 73 r~~~l~~l~~vA 84 (106)
T cd07316 73 LLQLLEFLFQIA 84 (106)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 176
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=42.42 E-value=69 Score=18.60 Aligned_cols=29 Identities=0% Similarity=0.105 Sum_probs=21.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 26 KVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 26 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
.+..-....|..+.+++|..|++.++-.+
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34444555678888899999999987754
No 177
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=41.50 E-value=54 Score=17.11 Aligned_cols=15 Identities=0% Similarity=0.184 Sum_probs=9.3
Q ss_pred cccHHHHHHHHcccc
Q 034516 4 GLNFKDFVAFLSVFS 18 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~ 18 (92)
.++|+++..-+..++
T Consensus 19 ~~s~e~L~~~v~~~c 33 (83)
T cd06404 19 SISLEELCNEVRDMC 33 (83)
T ss_pred CcCHHHHHHHHHHHh
Confidence 566777766665544
No 178
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=40.37 E-value=64 Score=17.63 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 034516 43 SFNDILEVLRDLSGSFMSDEQREQVLT 69 (92)
Q Consensus 43 ~~~el~~~l~~~~~~~~~~~~~~~~~~ 69 (92)
+.+|++.++.+. ...+++++++++++
T Consensus 80 ~~dElrai~~~~-~~~~~~e~l~~ILd 105 (112)
T PRK14981 80 TRDELRAIFAKE-RYTLSPEELDEILD 105 (112)
T ss_pred CHHHHHHHHHHh-ccCCCHHHHHHHHH
Confidence 345555555555 55566666665443
No 179
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=40.18 E-value=33 Score=14.26 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=11.0
Q ss_pred CCcccHHHHHHHHHHh
Q 034516 39 NGKVSFNDILEVLRDL 54 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~ 54 (92)
.|.|+.+++.++....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4677777777776654
No 180
>PRK01844 hypothetical protein; Provisional
Probab=40.14 E-value=53 Score=16.64 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.2
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVLT 69 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 69 (92)
+-.|+.+-++..+.++ |.++++..++++..
T Consensus 36 NPpine~mir~Mm~QM-GqkPSekki~Q~m~ 65 (72)
T PRK01844 36 NPPINEQMLKMMMMQM-GQKPSQKKINQMMS 65 (72)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHHHH
Confidence 4468888899999999 99999999888653
No 181
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=39.39 E-value=52 Score=17.05 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
..|.-...--.++|...-|-.+++.-++. +..+++.+ ..+.|+|+|.+.
T Consensus 25 ~~~~HPl~~Q~~WLskeRgG~IP~~V~~s-l~kL~~La---~~N~v~feeLc~ 73 (82)
T PF11020_consen 25 KPDHHPLQFQATWLSKERGGQIPEKVMDS-LSKLYKLA---KENNVSFEELCV 73 (82)
T ss_pred CCCCCchHHHHHHHHHhhCCCCCHHHHHH-HHHHHHHH---HHcCCCHHHHHH
Confidence 33444444445677776455566655444 44444443 345699998764
No 182
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=39.31 E-value=60 Score=17.02 Aligned_cols=51 Identities=6% Similarity=0.217 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHcccccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 3 DGLNFKDFVAFLSVFSAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
..||..|++.+-+..- -.-....++.+....-.+.-.-...++-..+++.+
T Consensus 13 n~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYN-ISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 4677777777665531 12233455666666655555666666777777766
No 183
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.50 E-value=50 Score=22.92 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=33.7
Q ss_pred cHHHHHHHHcccccCCC---HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 6 NFKDFVAFLSVFSAKAS---MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 6 ~~~ef~~~~~~~~~~~~---~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
+-.+|....+..+..+. .-+.++.+-+..|-|.+|.|+.+|=-.+++.-
T Consensus 46 t~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 46 TRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred hhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 34455555444432221 22567888889999999999999988888854
No 184
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=37.35 E-value=78 Score=21.40 Aligned_cols=50 Identities=10% Similarity=0.240 Sum_probs=32.5
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhhCCCC-------CHHHHHHHHHHHHHHhCCCCC
Q 034516 30 IFKVYDSDCNGKVSFNDILEVLRDLSGSFM-------SDEQREQVLTQVFKDAGYTRD 80 (92)
Q Consensus 30 ~F~~~D~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~d~~~~ 80 (92)
+|.++|.+....++.++-...+..+ +.+. +..++..-+..+++.++..+.
T Consensus 162 vFDI~d~~t~~~L~~~er~~l~e~y-glp~Vpvlg~~~~~~~~~~~~eii~~L~~~gR 218 (374)
T TIGR01209 162 LFDIREGKTNRSLPVEERLELAEKY-GLPHVEILGVYTADEAVEEIYEIIERLNKEGR 218 (374)
T ss_pred EEEEEECCCCccCCHHHHHHHHHHC-CCCccceeeEEcHHHHHHHHHHHHHHhhhcCc
Confidence 4666666778899999999999887 6433 334433234455566665543
No 185
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=36.47 E-value=39 Score=14.05 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=11.5
Q ss_pred ccHHHHHHHHHHhhCCC
Q 034516 42 VSFNDILEVLRDLSGSF 58 (92)
Q Consensus 42 i~~~el~~~l~~~~~~~ 58 (92)
.+..+|+.+++.++|..
T Consensus 10 ~d~~~Fr~lVQ~LTG~~ 26 (31)
T PF05678_consen 10 TDPSNFRALVQRLTGAP 26 (31)
T ss_pred eCHHHHHHHHHHhHCcC
Confidence 45677778887776653
No 186
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=36.42 E-value=17 Score=18.05 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=13.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 28 QLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 28 ~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
..+....+....-.+-..+++.++..+
T Consensus 26 ~~a~~~l~~~~~~dl~a~~L~~A~~~L 52 (73)
T PF12631_consen 26 EDALEALENGLPLDLVAEDLREALESL 52 (73)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 334444444444455666677766655
No 187
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=35.83 E-value=53 Score=20.02 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=20.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 30 IFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 30 ~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
+..-+|.+++|.++.+|+..+....
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHH
Confidence 3446799999999999999988765
No 188
>PF15063 TC1: Thyroid cancer protein 1
Probab=35.24 E-value=68 Score=16.47 Aligned_cols=8 Identities=13% Similarity=0.733 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 034516 25 QKVQLIFK 32 (92)
Q Consensus 25 ~~~~~~F~ 32 (92)
++.+.+|.
T Consensus 56 eRA~iI~~ 63 (79)
T PF15063_consen 56 ERARIIWE 63 (79)
T ss_pred HHHHHHHh
Confidence 33444443
No 189
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=34.93 E-value=83 Score=17.37 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.5
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 31 FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 31 F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
|-+.-..++..++.++++.++... |..+....+..++
T Consensus 7 yll~~l~g~~~pta~dI~~IL~Aa-Gvevd~~~~~~f~ 43 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSV-GADADDDRIELLL 43 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHc-CCcccHHHHHHHH
Confidence 333344566779999999999998 8877777655543
No 190
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=34.80 E-value=14 Score=22.16 Aligned_cols=48 Identities=17% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 71 (92)
..+.++.+|.-||++.--..+.+++...+..- +..-....++.++.++
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~-~iIRnr~KI~Avi~NA 94 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDP-GIIRNRRKIRAVINNA 94 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTST-TSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCc-chhhhHHHHHHHHHHH
Confidence 34678999999999888888888888777654 4444555666655553
No 191
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=34.68 E-value=24 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=7.2
Q ss_pred CCccCHHHHHhh
Q 034516 80 DSYLTLGDFIKV 91 (92)
Q Consensus 80 ~g~i~~~eF~~~ 91 (92)
.|.||.+||+.+
T Consensus 25 tG~iTPeEFV~A 36 (145)
T PF03986_consen 25 TGVITPEEFVAA 36 (145)
T ss_dssp HS---HHHHHHH
T ss_pred cceeCHHHHHHh
Confidence 489999999864
No 192
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.05 E-value=1.1e+02 Score=18.34 Aligned_cols=22 Identities=14% Similarity=0.575 Sum_probs=18.3
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q 034516 32 KVYDSDCNGKVSFNDILEVLRD 53 (92)
Q Consensus 32 ~~~D~~~~g~i~~~el~~~l~~ 53 (92)
++|++...-+|+.+++..+++.
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~ 40 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKE 40 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhc
Confidence 4678888889999999998875
No 193
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=33.87 E-value=91 Score=17.52 Aligned_cols=46 Identities=13% Similarity=0.316 Sum_probs=33.4
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHH
Q 034516 19 AKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQV 67 (92)
Q Consensus 19 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 67 (92)
+.....+++..+|++|-. +.|+.+.+..++...=|..++..++.-+
T Consensus 31 ~d~tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl 76 (122)
T PF06648_consen 31 RDETFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYL 76 (122)
T ss_pred cCchHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHH
Confidence 456677899999999975 6788888888887652356776665443
No 194
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=33.24 E-value=50 Score=17.26 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=14.7
Q ss_pred ccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Q 034516 42 VSFNDILEVLRDLSGSFMSDEQREQVLTQVFK 73 (92)
Q Consensus 42 i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (92)
++..||...+..- ..++..+++..++.++.
T Consensus 2 mtk~eli~~ia~~--~~~s~~~v~~vv~~~~~ 31 (96)
T TIGR00987 2 LTKAEMSEYLFDE--LGLSKREAKELVELFFE 31 (96)
T ss_pred CCHHHHHHHHHHH--hCcCHHHHHHHHHHHHH
Confidence 3455555555543 23455555554444443
No 195
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.87 E-value=1.5e+02 Score=19.78 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=37.5
Q ss_pred HHHHHHHcccccCCCHHHHHHHHHHhh------cCCCCCcccHHHHHHHHHHhhCCCCCHHHHHH
Q 034516 8 KDFVAFLSVFSAKASMQQKVQLIFKVY------DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQ 66 (92)
Q Consensus 8 ~ef~~~~~~~~~~~~~~~~~~~~F~~~------D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 66 (92)
.+|..++.+-. .....+++.+|+.+ |+|.+.--..++|+++=... . -+++.+.+.
T Consensus 16 rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AY-E-VLsDpekRk 76 (336)
T KOG0713|consen 16 RDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAY-E-VLSDPEKRK 76 (336)
T ss_pred CCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH-H-HhcCHHHHH
Confidence 46777777743 45567788888753 88999988888888887765 2 244444444
No 196
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=32.78 E-value=73 Score=16.06 Aligned_cols=60 Identities=18% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCC--CCccCHHHHHh
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR--DSYLTLGDFIK 90 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~g~i~~~eF~~ 90 (92)
.++...|++. |..-..|-...+... -.+.++.+.+.+++.+....+... +..|+.+....
T Consensus 7 k~I~~~FkL~-----Gl~Lr~eA~~~l~~~-l~~~~~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~ 68 (73)
T PF12213_consen 7 KKIVKAFKLR-----GLSLRSEASKYLAEQ-LQSLSEEEREDWLDKIIDAVQKQPLSSSIVDKEHIES 68 (73)
T ss_dssp HHHHHHHHHT-----T-EE-HHHHHHHHHH-TTTS-TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHH
T ss_pred HHHHHHhhhc-----cceecHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHH
Confidence 4556677763 666666666666665 455667778888888888887654 34566665543
No 197
>PHA02100 hypothetical protein
Probab=32.76 E-value=75 Score=16.99 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=12.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCC
Q 034516 56 GSFMSDEQREQVLTQVFKDAGYTRD 80 (92)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~d~~~~ 80 (92)
|..++++.++++...+|..+-..++
T Consensus 27 G~~VTpQvlD~wE~elw~am~~~gd 51 (112)
T PHA02100 27 GNRISEEQIDAVENEVWEAATAAGV 51 (112)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHccc
Confidence 4445555555555555554444433
No 198
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=31.76 E-value=27 Score=17.80 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHhCCCC-CCccCHHHHHhhC
Q 034516 52 RDLSGSFMSDEQREQVLTQVFKDAGYTR-DSYLTLGDFIKVL 92 (92)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~eF~~~l 92 (92)
..+.|.+.+.+.+.+.+ ...+.+. -+.++-+|+++++
T Consensus 49 ~~L~G~~~~~~~i~~~l----~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 49 EALIGCPYDREAIKEAL----NSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHTTCBSSHHHHHHHH----HHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHH----HHhCHhhccccCCHHHHHHhC
Confidence 33447788888877654 5554432 3578888888763
No 199
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=31.03 E-value=1.1e+02 Score=18.51 Aligned_cols=20 Identities=10% Similarity=0.234 Sum_probs=17.1
Q ss_pred cCCCCCcccHHHHHHHHHHh
Q 034516 35 DSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 35 D~~~~g~i~~~el~~~l~~~ 54 (92)
-...||.|+.+|-..+...+
T Consensus 89 AAkADG~ID~~Er~~I~~~l 108 (188)
T PF04391_consen 89 AAKADGHIDEEERQRIEGAL 108 (188)
T ss_pred HHHcCCCCCHHHHHHHHHHH
Confidence 46788999999999998877
No 200
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=30.27 E-value=65 Score=18.98 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 74 (92)
..+..+++.+-..+...++..+|...+-- |..+++++++..+..++..
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGV--GV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKACGV--GVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTTTT--T----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHcCC--CeEECHHHHHHHHHHHHHH
Confidence 34555555554444456777777766644 6677888888777666553
No 201
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=30.04 E-value=77 Score=15.46 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 38 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
.++-++...+...+..- +..+++..++..+
T Consensus 10 ~~~P~g~~~l~~~L~~~-g~~~se~avRrrL 39 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLR-GEELSEEAVRRRL 39 (66)
T ss_pred cCCCCCHHHHHHHHHhc-ChhhhHHHHHHHH
Confidence 45678888888888887 8888887776654
No 202
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=29.59 E-value=1.2e+02 Score=17.62 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=19.9
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHH
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQV 67 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 67 (92)
+..++...++..+..+++.+.+...+.++
T Consensus 26 ~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI 54 (163)
T PF08839_consen 26 KETPTFQKIKPSVENMTKRRFTEEHLAQI 54 (163)
T ss_dssp T---BHHHHHHHHHHHHSS---HHHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 34789999999999988999999888874
No 203
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=29.21 E-value=1.3e+02 Score=17.74 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=35.3
Q ss_pred CCCCcccHHHHHHHHHHhhC-----------CCCCHHHHHHHHHHHHHHhCCCCCCccCHHH
Q 034516 37 DCNGKVSFNDILEVLRDLSG-----------SFMSDEQREQVLTQVFKDAGYTRDSYLTLGD 87 (92)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 87 (92)
+.+|.|+...|-.+++.-.| .+++.+++..+++.+.+.+..++...=.|+.
T Consensus 95 ~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye~ 156 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYEK 156 (175)
T ss_pred CcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCCchHHHHH
Confidence 34677999988888874433 3667788888888888877666544445544
No 204
>PF14178 YppF: YppF-like protein
Probab=27.62 E-value=80 Score=15.41 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=13.0
Q ss_pred CcccHHHHHHHHHHh
Q 034516 40 GKVSFNDILEVLRDL 54 (92)
Q Consensus 40 g~i~~~el~~~l~~~ 54 (92)
|.|+..|+++.++.+
T Consensus 35 gei~i~eYR~lvreL 49 (60)
T PF14178_consen 35 GEISINEYRNLVREL 49 (60)
T ss_pred CcccHHHHHHHHHHH
Confidence 889999999988876
No 205
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.50 E-value=1e+02 Score=16.04 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHcccccC---------------CCHHHHHHHHHHhhcCCCCCc
Q 034516 3 DGLNFKDFVAFLSVFSAK---------------ASMQQKVQLIFKVYDSDCNGK 41 (92)
Q Consensus 3 ~~i~~~ef~~~~~~~~~~---------------~~~~~~~~~~F~~~D~~~~g~ 41 (92)
...++.+|...+....+. .++++.+..+++.|| .||.
T Consensus 24 ~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~~--~dGf 75 (87)
T cd01612 24 ATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCFG--TNGE 75 (87)
T ss_pred CCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhcC--CCCE
Confidence 456777887776553221 235678888888885 4454
No 206
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.41 E-value=66 Score=22.14 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 54 (92)
+...+.++|++-|.|++|.++.+||.-+-..+
T Consensus 475 pnsvlgkiwklad~d~dg~ld~eefala~hli 506 (532)
T KOG1954|consen 475 PNSVLGKIWKLADIDKDGMLDDEEFALANHLI 506 (532)
T ss_pred chhHHHhhhhhhcCCcccCcCHHHHHHHHHHH
Confidence 44667889999999999999999987654433
No 207
>PLN02764 glycosyltransferase family protein
Probab=27.11 E-value=1.9e+02 Score=20.04 Aligned_cols=51 Identities=10% Similarity=-0.029 Sum_probs=30.8
Q ss_pred CcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 40 GKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 40 g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
|.++.+++.+.++.++... -...++++.+.++=+.+...|+...+.++|++
T Consensus 390 ~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~ 441 (453)
T PLN02764 390 GWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIE 441 (453)
T ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5789999999999985432 22344555454443444334444566666664
No 208
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=26.79 E-value=1.5e+02 Score=17.60 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=37.2
Q ss_pred ccCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Q 034516 18 SAKASMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAG 76 (92)
Q Consensus 18 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 76 (92)
.|++.|+.+.+..|..+-.| -..+.+|+.+++... -.++++++.+++.+.++..
T Consensus 65 ~pG~kPeKEYhtsYs~vqaN--Fqcs~~DLsdii~i~---f~~deel~~~~e~i~~~v~ 118 (160)
T PF09824_consen 65 EPGEKPEKEYHTSYSKVQAN--FQCSMEDLSDIIYIA---FMSDEELRDYVEKIEKEVE 118 (160)
T ss_pred CCCCCchHHHHhhHhheeee--eEeeHHHHHHHHhee---ecCHHHHHHHHHHHHHHHH
Confidence 34455777777777766543 345778888888764 4577888888888777765
No 209
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=26.55 E-value=1.3e+02 Score=18.69 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=25.7
Q ss_pred cccHHHHHHHHcccccCCC-----------HHHHHHHHHHhhcCCCCCccc
Q 034516 4 GLNFKDFVAFLSVFSAKAS-----------MQQKVQLIFKVYDSDCNGKVS 43 (92)
Q Consensus 4 ~i~~~ef~~~~~~~~~~~~-----------~~~~~~~~F~~~D~~~~g~i~ 43 (92)
.++|..++.-|+.....+. .-+++..--+.||++..|.|-
T Consensus 177 eldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 177 ELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred CCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 5778888887777542222 113455566788999988753
No 210
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=26.31 E-value=89 Score=15.00 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=19.7
Q ss_pred cccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 41 KVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 41 ~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
.+|.+|+...+..+ +..++..++-.++
T Consensus 9 ~lTeEEl~~~i~~L-~~~~~~~dm~~IW 35 (61)
T TIGR01639 9 KLSKEELNELINSL-DEIPNRNDMLIIW 35 (61)
T ss_pred HccHHHHHHHHHhh-cCCCCHHHHHHHH
Confidence 46778888888888 7777777665543
No 211
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=26.27 E-value=50 Score=16.26 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=21.2
Q ss_pred CCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 034516 37 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQV 71 (92)
Q Consensus 37 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 71 (92)
.+...++..++.++++...|..++..++.++++.+
T Consensus 9 ~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l 43 (76)
T PF08479_consen 9 EGNTLLPEEELQAILAPYIGRCLTLADLQQLADAL 43 (76)
T ss_dssp ES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Confidence 34445666677777776667777777766655444
No 212
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=26.25 E-value=1.1e+02 Score=16.06 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=10.0
Q ss_pred CCCcccHHHHHHHHHHh
Q 034516 38 CNGKVSFNDILEVLRDL 54 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~ 54 (92)
.||.|+.+|-..+...+
T Consensus 12 ADG~id~~E~~~I~~~~ 28 (95)
T cd07178 12 ADGHIDEAERARILGEL 28 (95)
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 45666666665555544
No 213
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.16 E-value=1.6e+02 Score=17.91 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 25 QKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 25 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
+-...+-+.|.+|+.|.|+...+....+. .+.++...+-+
T Consensus 119 ~l~~lV~~af~~dk~G~l~~~rIl~Lrrl----~i~D~~w~~am 158 (195)
T PF11363_consen 119 ELRALVNRAFQVDKEGNLNTSRILGLRRL----EIDDERWQEAM 158 (195)
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHhc----cCCCHHHHHHH
Confidence 33445566788999999999877655543 34455544433
No 214
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=26.14 E-value=45 Score=17.19 Aligned_cols=19 Identities=5% Similarity=0.329 Sum_probs=12.6
Q ss_pred HHhCCCCCCccCHHHHHhh
Q 034516 73 KDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 73 ~~~d~~~~g~i~~~eF~~~ 91 (92)
....--..+.||++||..+
T Consensus 26 ~~C~FVAPmSIS~eeY~~L 44 (81)
T PF10891_consen 26 PKCYFVAPMSISFEEYIRL 44 (81)
T ss_pred cccceecccEeeHHHHHHH
Confidence 3344445678999998764
No 215
>COG5562 Phage envelope protein [General function prediction only]
Probab=25.20 E-value=43 Score=19.19 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=13.0
Q ss_pred hCCCCCCccCHHHHHhh
Q 034516 75 AGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 75 ~d~~~~g~i~~~eF~~~ 91 (92)
...+..|..+|+||+..
T Consensus 81 l~~~qsGqttF~ef~~~ 97 (137)
T COG5562 81 LRRHQSGQTTFEEFCSA 97 (137)
T ss_pred HHHHhcCCccHHHHHHH
Confidence 34456789999999874
No 216
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=24.97 E-value=94 Score=14.79 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHhh
Q 034516 23 MQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 91 (92)
Q Consensus 23 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 91 (92)
|...++++.+.- .+.+.++.+- ...+... .+..+..+..........++...|++++...+
T Consensus 4 P~a~vkri~k~~--~~~~~vs~ea-~~~i~~a-----~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~A 64 (65)
T PF00808_consen 4 PLARVKRIMKSD--PDVMRVSKEA-VEAIAKA-----AEEFIQYLAKEANEIAQRDKRKTITYEDVAKA 64 (65)
T ss_dssp -HHHHHHHHHHT--STTSEE-HHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHH
T ss_pred ChHHHHHHhccC--CCccchhHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence 345566666653 3334455443 3333332 23455566666666666677778999988765
No 217
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=24.85 E-value=2.5e+02 Score=19.60 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 034516 22 SMQQKVQLIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKD 74 (92)
Q Consensus 22 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~ 74 (92)
..-+.++..++.+..++.-.++.+.+..+-........+++++.+.+..+++.
T Consensus 328 ~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~ 380 (460)
T cd01560 328 RDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEE 380 (460)
T ss_pred CCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHh
Confidence 33355667777777777777776665554221223467788877766665553
No 218
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=24.62 E-value=1.1e+02 Score=15.81 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=11.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHH
Q 034516 46 DILEVLRDLSGSFMSDEQREQ 66 (92)
Q Consensus 46 el~~~l~~~~~~~~~~~~~~~ 66 (92)
|+-.+|+.+ |..+++++..-
T Consensus 21 EIL~ALrkL-ge~Ls~eE~~F 40 (78)
T PF06384_consen 21 EILTALRKL-GEKLSPEEEAF 40 (78)
T ss_dssp HHHHHHHHT-T----HHHHHH
T ss_pred HHHHHHHHh-cCCCCHHHHHH
Confidence 556788888 99999887544
No 219
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.97 E-value=70 Score=13.01 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=12.0
Q ss_pred CCcccHHHHHHHHHHh
Q 034516 39 NGKVSFNDILEVLRDL 54 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~ 54 (92)
.|.||.+|+...-..+
T Consensus 14 ~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 14 KGEISEEEYEQKKARL 29 (31)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 4888888888766554
No 220
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.48 E-value=98 Score=14.48 Aligned_cols=10 Identities=30% Similarity=0.561 Sum_probs=6.0
Q ss_pred CCccCHHHHH
Q 034516 80 DSYLTLGDFI 89 (92)
Q Consensus 80 ~g~i~~~eF~ 89 (92)
+|.|+.+||-
T Consensus 21 ~GrL~~~Ef~ 30 (53)
T PF08044_consen 21 EGRLSLDEFD 30 (53)
T ss_pred CCCCCHHHHH
Confidence 4566666664
No 221
>PLN02208 glycosyltransferase family protein
Probab=23.47 E-value=2.6e+02 Score=19.29 Aligned_cols=52 Identities=8% Similarity=-0.094 Sum_probs=28.0
Q ss_pred CCCcccHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHhCCCCCCccCHHHHH
Q 034516 38 CNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 89 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 89 (92)
.+|.++.+++...++.++... -...++++.+.++=+.+-..++..-++++|+
T Consensus 382 ~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v 434 (442)
T PLN02208 382 KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFV 434 (442)
T ss_pred cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 346799999999999885332 1234455544443333322222234444444
No 222
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.24 E-value=1.4e+02 Score=16.10 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=30.7
Q ss_pred HHhhcCCCCCcccHHHHH----HHHHHhhCCCCCHHHHHHHHHHHHHHhC
Q 034516 31 FKVYDSDCNGKVSFNDIL----EVLRDLSGSFMSDEQREQVLTQVFKDAG 76 (92)
Q Consensus 31 F~~~D~~~~g~i~~~el~----~~l~~~~~~~~~~~~~~~~~~~~~~~~d 76 (92)
-+.....++|.-..++-. ..+... |.++++.+++..++.....+.
T Consensus 57 eq~~~~~~~G~~K~~~A~~~v~~~L~~~-gi~~t~~~i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 57 EQVAKEGGKGEEKKAEAVQYVKERLKKK-GIKVTDEQIEGAIEAAVKEMN 105 (108)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHh
Confidence 334444557776666444 445555 889999999999888877664
No 223
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=23.03 E-value=1.5e+02 Score=16.32 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=20.5
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Q 034516 47 ILEVLRDLSGSFMSDEQREQVLTQVFKDAG 76 (92)
Q Consensus 47 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d 76 (92)
++..++.+++...++++.+++.+-+..+++
T Consensus 91 vk~~iRhiL~~~a~~e~~EAi~D~V~NEf~ 120 (121)
T PF06919_consen 91 VKTYIRHILGNKAKPEHLEAIFDVVLNEFD 120 (121)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhhcc
Confidence 445666666888888888887666666554
No 224
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=22.72 E-value=1.3e+02 Score=16.15 Aligned_cols=11 Identities=18% Similarity=0.453 Sum_probs=5.0
Q ss_pred ccHHHHHHHHH
Q 034516 42 VSFNDILEVLR 52 (92)
Q Consensus 42 i~~~el~~~l~ 52 (92)
++..|...++-
T Consensus 71 L~~~E~~qi~N 81 (117)
T PF03874_consen 71 LTEFEILQIIN 81 (117)
T ss_dssp S-HHHHHHHHH
T ss_pred CCHHHHHHHhc
Confidence 55555544443
No 225
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.70 E-value=2.2e+02 Score=18.17 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=30.4
Q ss_pred HHHHhhc--CCCCCcccHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 29 LIFKVYD--SDCNGKVSFNDILEVLRDLS-GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 29 ~~F~~~D--~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
.+|.++- ...||.|+..|+. ..+.+. ...+++++.+. +..+|..... ...++++|.+
T Consensus 57 a~~aLl~~vAkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~-a~~lf~~~k~---~~~~l~~~~~ 116 (267)
T PRK09430 57 TTFAVMGHLAKAKGRVTEADIR-IASQLMDRMNLHGEARRA-AQQAFREGKE---PDFPLREKLR 116 (267)
T ss_pred HHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHH-HHHHHHHhcc---cCCCHHHHHH
Confidence 3444442 4678999999998 444432 23455555333 3344554322 2355666554
No 226
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=22.59 E-value=1.3e+02 Score=15.50 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 61 DEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 61 ~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
.++++.++...++. .+.+.+++++.+.
T Consensus 33 ~d~vr~~~re~i~~---~g~~~~~~~~l~~ 59 (86)
T PF10163_consen 33 RDEVRQLCREIIRE---RGIDNLTFEDLLE 59 (86)
T ss_dssp HHHHHHHHHHHHHH---H-TTTSBHHHHHH
T ss_pred HHHHHHHHHHHHHh---hCCCCCCHHHHHH
Confidence 44566666666665 3344677777654
No 227
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=22.33 E-value=1.5e+02 Score=16.12 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 42 VSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 42 i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
++.+++..++... |..+.+..+..++
T Consensus 17 ~ta~~I~~IL~aa-GveVe~~~~~~~~ 42 (105)
T cd04411 17 LTEDKIKELLSAA-GAEIEPERVKLFL 42 (105)
T ss_pred CCHHHHHHHHHHc-CCCcCHHHHHHHH
Confidence 9999999999998 8888888766644
No 228
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=22.30 E-value=1.1e+02 Score=14.68 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhCCCCCCccCHHHHHh
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 90 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 90 (92)
+|.+...++...++.. +..++...-|.-++.+|+.
T Consensus 21 ~g~v~ls~l~~~~~~~-----------------~~~f~~~~yG~~~l~~ll~ 55 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKK-----------------YPDFDPRDYGFSSLSELLE 55 (74)
T ss_dssp TSSEEHHHHHHHHHHH-----------------HTT--TCCTTSSSHHHHHH
T ss_pred CceEEHHHHHHHHHHH-----------------CCCCCccccCCCcHHHHHH
Confidence 5678888888777765 2344555556666666653
No 229
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=21.91 E-value=1e+02 Score=17.05 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=14.6
Q ss_pred CCCCcccHHHHHHHHHHh
Q 034516 37 DCNGKVSFNDILEVLRDL 54 (92)
Q Consensus 37 ~~~g~i~~~el~~~l~~~ 54 (92)
|..|+|+.+++.+++..+
T Consensus 6 DtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSEV 23 (126)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 667899999998888755
No 230
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.87 E-value=2.1e+02 Score=17.93 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=23.2
Q ss_pred cCCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 35 DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 35 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
-...||+|+-.|-..++..+ ...-.+.+.+.++
T Consensus 120 AAkaDGhIDe~ERa~I~~~l-~esG~d~e~~~~l 152 (225)
T COG2979 120 AAKADGHIDEKERARIMQKL-QESGVDPEAQAFL 152 (225)
T ss_pred HHhhcCCcCHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence 56789999999999999776 4433444455544
No 231
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=20.64 E-value=30 Score=14.35 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=11.0
Q ss_pred HHHHhCCCCCCccCHHH
Q 034516 71 VFKDAGYTRDSYLTLGD 87 (92)
Q Consensus 71 ~~~~~d~~~~g~i~~~e 87 (92)
++..-|.+++-.|+.++
T Consensus 4 LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIED 20 (30)
T ss_pred HhhccccCCCcEEEEec
Confidence 34566778777776543
No 232
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=20.62 E-value=2.3e+02 Score=17.64 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=27.7
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
.|.+|+...+++...++.. +..++.+.+..++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~-~~~~~~~~l~~iV 85 (211)
T COG1859 54 LDEEGWADIDELLEGLRKA-GRWLTRELLLAVV 85 (211)
T ss_pred eccccchhHHHHHHHHHhh-ccCCCHHHHHHHH
Confidence 4889999999999999998 8889988877754
No 233
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=20.54 E-value=76 Score=19.43 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=21.3
Q ss_pred CCCcccHHHHHHHHcccccCCCHHHHHHH
Q 034516 1 MVDGLNFKDFVAFLSVFSAKASMQQKVQL 29 (92)
Q Consensus 1 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 29 (92)
|.+-++|++|......+.|++...+.++.
T Consensus 24 ms~fl~f~dy~~fi~alwPn~~e~~~i~~ 52 (199)
T PF12132_consen 24 MSKFLNFEDYRNFIRALWPNGDEDDIIRE 52 (199)
T ss_pred HHHhccHHHHHHHHHhhCCCCCcCHHHHH
Confidence 34567888999888888887776655544
No 234
>PLN03007 UDP-glucosyltransferase family protein
Probab=20.51 E-value=2.6e+02 Score=19.39 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHhhCCCCCHHHHHHHH---HHHHHHh-CCCCCCccCHHHHHh
Q 034516 39 NGKVSFNDILEVLRDLSGSFMSDEQREQVL---TQVFKDA-GYTRDSYLTLGDFIK 90 (92)
Q Consensus 39 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~---~~~~~~~-d~~~~g~i~~~eF~~ 90 (92)
.+.++.+++.+.++.++... ....+++.+ .+..+.. ...|+..-++++|++
T Consensus 422 ~~~~~~~~l~~av~~~m~~~-~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~ 476 (482)
T PLN03007 422 GDFISREKVEKAVREVIVGE-EAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFME 476 (482)
T ss_pred cCcccHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 35689999999999885432 112222211 1122222 234445677777765
No 235
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=20.51 E-value=1.2e+02 Score=16.46 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=14.8
Q ss_pred CCCcccHHHHHHHHHHh
Q 034516 38 CNGKVSFNDILEVLRDL 54 (92)
Q Consensus 38 ~~g~i~~~el~~~l~~~ 54 (92)
=.|.|+.+|+..++..+
T Consensus 26 L~~~is~~ef~~iI~~I 42 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTI 42 (118)
T ss_pred hcCCCCHHHHHHHHHHH
Confidence 46899999999999876
No 236
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.42 E-value=1.2e+02 Score=14.48 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhhCCCC
Q 034516 28 QLIFKVYDSDCNGKVSFNDILEVLRDLSGSFM 59 (92)
Q Consensus 28 ~~~F~~~D~~~~g~i~~~el~~~l~~~~~~~~ 59 (92)
..+++.++++...-++.++...-.+.. |.|.
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~-G~N~ 37 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKY-GPNE 37 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHH-SSSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhc-cccc
Confidence 445666666666667778877777777 6543
No 237
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.23 E-value=1.7e+02 Score=15.89 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=8.3
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 034516 56 GSFMSDEQREQVLTQVFK 73 (92)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~ 73 (92)
|..+++.++...+..+.+
T Consensus 64 gI~vsd~evd~~i~~ia~ 81 (118)
T PF09312_consen 64 GIKVSDEEVDEAIANIAK 81 (118)
T ss_dssp T----HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 666666666665555444
No 238
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=20.04 E-value=1.1e+02 Score=13.54 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=9.3
Q ss_pred CcccHHHHHHHHHHh
Q 034516 40 GKVSFNDILEVLRDL 54 (92)
Q Consensus 40 g~i~~~el~~~l~~~ 54 (92)
+.++..++..-+..+
T Consensus 17 ~~~~~~~v~~~v~~L 31 (47)
T PF02671_consen 17 GRISRSEVIEEVSEL 31 (47)
T ss_dssp TCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 556666666666655
No 239
>PTZ00315 2'-phosphotransferase; Provisional
Probab=20.03 E-value=3.1e+02 Score=19.98 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=26.5
Q ss_pred CCCCCcccHHHHHHHHHHhhCCCCCHHHHHHHH
Q 034516 36 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 68 (92)
Q Consensus 36 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 68 (92)
-|.+|++..+++.+..+.- +..++.+.++.++
T Consensus 400 ld~~Gwv~vd~LL~~~~~~-~~~~t~e~i~~VV 431 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMR-NDPVSVQDVARVV 431 (582)
T ss_pred cCCCCCEEHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 5889999999999988765 6678888888765
Done!