BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034518
MASFAAARSIFRSNSARNAAARLASQAKTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVE
SMLPYHTATASALSTSLLSISQCGYGWLPEGL

High Scoring Gene Products

Symbol, full name Information P value
NFD6
AT2G20585 		protein from Arabidopsis thaliana 1.4e-09
AT1G28395 protein from Arabidopsis thaliana 1.0e-06
AT2G33847 protein from Arabidopsis thaliana 1.5e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034518
        (92 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006258 - symbol:NFD6 "AT2G20585" species:37...   139  1.4e-09   1
TAIR|locus:505006152 - symbol:AT1G28395 "AT1G28395" speci...   112  1.0e-06   1
TAIR|locus:4010713673 - symbol:AT2G33847 species:3702 "Ar...   101  1.5e-05   1


>TAIR|locus:505006258 [details] [associations]
            symbol:NFD6 "AT2G20585" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC007048 HOGENOM:HOG000237694
            EMBL:AY057495 EMBL:AY085547 EMBL:AY103298 RefSeq:NP_565478.1
            UniGene:At.26972 IntAct:Q93ZJ3 STRING:Q93ZJ3
            EnsemblPlants:AT2G20585.1 GeneID:816581 KEGG:ath:AT2G20585
            TAIR:At2g20585 InParanoid:Q93ZJ3 OMA:SPVEMSS
            ProtClustDB:CLSN2688278 Genevestigator:Q93ZJ3 Uniprot:Q93ZJ3
        Length = 100

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query:    28 KTKAAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGW 87
             + K+AP  F  +A++   L+ LR+PVE+SFCVES+LPYH             IS   YGW
Sbjct:    32 QAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATASALMTSKLSISGQTYGW 91

Query:    88 LPE 90
             L +
Sbjct:    92 LSD 94


>TAIR|locus:505006152 [details] [associations]
            symbol:AT1G28395 "AT1G28395" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0006164 "purine nucleotide biosynthetic process"
            evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
            HOGENOM:HOG000237694 EMBL:AY085292 EMBL:BT025573 EMBL:AK228142
            IPI:IPI00546694 RefSeq:NP_564308.1 RefSeq:NP_849722.1
            RefSeq:NP_973928.1 UniGene:At.40897 STRING:Q8LEQ7
            EnsemblPlants:AT1G28395.1 EnsemblPlants:AT1G28395.2
            EnsemblPlants:AT1G28395.3 GeneID:839737 KEGG:ath:AT1G28395
            TAIR:At1g28395 InParanoid:Q8LEQ7 PhylomeDB:Q8LEQ7
            ProtClustDB:CLSN2688055 Genevestigator:Q8LEQ7 Uniprot:Q8LEQ7
        Length = 95

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXISQCGYGWLPE 90
             +A + F +  + PL+    RSPVE+S CVE+MLPYH             +S+   GW+ +
Sbjct:    32 SARTAFRMPKQSPLTNRIFRSPVELSCCVETMLPYHTATASALLNSMLSVSR--RGWIVD 89

Query:    91 GL 92
             GL
Sbjct:    90 GL 91


>TAIR|locus:4010713673 [details] [associations]
            symbol:AT2G33847 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
            evidence=ISM] EMBL:CP002685 EMBL:DQ487510 IPI:IPI00846747
            RefSeq:NP_001078001.1 UniGene:At.37877 UniGene:At.72891
            EnsemblPlants:AT2G33847.1 GeneID:5007926 KEGG:ath:AT2G33847
            TAIR:At2g33847 OMA:KLPKQSP PhylomeDB:Q1G3S4 ProtClustDB:CLSN2699077
            Genevestigator:Q1G3S4 Uniprot:Q1G3S4
        Length = 93

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query:    31 AAPSPFGVSAKKPLSLAALRSPVEMSFCVESMLPYHXXXXXXXXXXXXXIS 81
             +A S F +  + PLS    RSPVE+S CVE+MLPYH             +S
Sbjct:    29 SARSSFKLPKQSPLSHRIFRSPVELSCCVETMLPYHTATASALLNSMLSVS 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       92        53   0.00091  102 3  11 22  0.44    27
                                                     29  0.50    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  453 (48 KB)
  Total size of DFA:  79 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.40u 0.19s 6.59t   Elapsed:  00:00:01
  Total cpu time:  6.40u 0.19s 6.59t   Elapsed:  00:00:01
  Start:  Thu May  9 18:20:08 2013   End:  Thu May  9 18:20:09 2013

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