Query 034518
Match_columns 92
No_of_seqs 102 out of 107
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 05:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o7b_T Tumor necrosis factor-i 7.2 1.5E+02 0.0053 19.2 1.1 15 78-92 42-56 (98)
2 3brv_A Inhibitor of nuclear fa 6.6 1.3E+02 0.0045 17.6 0.4 9 83-91 40-48 (48)
3 1b12_A Signal peptidase I; ser 4.2 1.2E+02 0.0043 21.5 -1.0 12 79-90 203-214 (248)
4 2pq4_B Periplasmic nitrate red 3.3 6.8E+02 0.023 13.2 1.8 12 7-18 5-16 (35)
5 2jcq_A CD44 antigen; sugar-bin 3.2 3.9E+02 0.013 18.8 0.9 13 78-91 54-66 (154)
6 3m4w_A Sigma-E factor regulato 2.9 3.8E+02 0.013 20.0 0.7 9 84-92 198-208 (295)
7 1p65_A Nucleocapsid protein; v 2.5 2.8E+02 0.0095 17.7 -0.5 23 54-76 47-69 (73)
8 1n0q_A 3ANK, 3 ankyrin repeats 2.5 4.2E+02 0.014 14.4 0.4 11 61-71 35-45 (93)
9 2ftc_K 39S ribosomal protein L 2.4 2.4E+02 0.0081 18.6 -1.0 13 56-68 50-62 (98)
10 2bcx_B Ryanodine receptor 1; E 2.3 3.8E+02 0.013 14.2 0.0 7 61-67 24-30 (30)
No 1
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=7.16 E-value=1.5e+02 Score=19.19 Aligned_cols=15 Identities=27% Similarity=0.928 Sum_probs=12.0
Q ss_pred hccccccccccCCCC
Q 034518 78 LSISQCGYGWLPEGL 92 (92)
Q Consensus 78 Lsv~s~~~~~Lsqg~ 92 (92)
.+.+...+|||++|.
T Consensus 42 ~G~~~C~~GWL~Dgs 56 (98)
T 1o7b_T 42 IGFHVCAAGWMAKGR 56 (98)
T ss_dssp TTCCCSSCEEBTTTB
T ss_pred cCccccccccccCCe
Confidence 567888899999873
No 2
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=6.59 E-value=1.3e+02 Score=17.56 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=5.3
Q ss_pred ccccccCCC
Q 034518 83 CGYGWLPEG 91 (92)
Q Consensus 83 ~~~~~Lsqg 91 (92)
-.|.||.+|
T Consensus 40 lDwSWL~~~ 48 (48)
T 3brv_A 40 LDWSWLQTE 48 (48)
T ss_dssp SCCGGGC--
T ss_pred hhhhhhccC
Confidence 368888764
No 3
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=4.15 E-value=1.2e+02 Score=21.49 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=7.0
Q ss_pred ccccccccccCC
Q 034518 79 SISQCGYGWLPE 90 (92)
Q Consensus 79 sv~s~~~~~Lsq 90 (92)
|.|||.||.+|+
T Consensus 203 S~DSR~~G~Vp~ 214 (248)
T 1b12_A 203 SADSRYWGFVPE 214 (248)
T ss_dssp CCCHHHHCCEEG
T ss_pred cCCCCcccccCH
Confidence 456666666554
No 4
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=3.31 E-value=6.8e+02 Score=13.20 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=8.8
Q ss_pred HHHHHhhhhhhH
Q 034518 7 ARSIFRSNSARN 18 (92)
Q Consensus 7 aRS~~RSaasr~ 18 (92)
+|.|+...+...
T Consensus 5 RR~FLK~~aaa~ 16 (35)
T 2pq4_B 5 RRSFMKANAVAA 16 (35)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999776544
No 5
>2jcq_A CD44 antigen; sugar-binding protein, hyauronan, LINK-domain, proteoglycan, polymorphism, blood group antigen, alternative splicing, lectin; HET: NAG GCU 5AX GOL; 1.25A {Mus musculus} PDB: 2jcr_A* 2jcp_A 2i83_A 1poz_A 1uuh_A
Probab=3.18 E-value=3.9e+02 Score=18.82 Aligned_cols=13 Identities=38% Similarity=1.050 Sum_probs=10.4
Q ss_pred hccccccccccCCC
Q 034518 78 LSISQCGYGWLPEG 91 (92)
Q Consensus 78 Lsv~s~~~~~Lsqg 91 (92)
.+.+...+||| +|
T Consensus 54 ~Gld~C~~GWL-Dg 66 (154)
T 2jcq_A 54 KGFETCRYGFI-EG 66 (154)
T ss_dssp TTCCCSSCEEC-SS
T ss_pred cCcccccCCcc-cC
Confidence 46788889999 77
No 6
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=2.93 E-value=3.8e+02 Score=20.01 Aligned_cols=9 Identities=44% Similarity=1.461 Sum_probs=6.8
Q ss_pred cc--cccCCCC
Q 034518 84 GY--GWLPEGL 92 (92)
Q Consensus 84 ~~--~~Lsqg~ 92 (92)
.| +|||+||
T Consensus 198 ~W~~~wlP~GF 208 (295)
T 3m4w_A 198 SWTPTWLPQGF 208 (295)
T ss_dssp SCEESCCCTTC
T ss_pred CCccCCCCCCe
Confidence 56 4899986
No 7
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=2.53 E-value=2.8e+02 Score=17.68 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=15.6
Q ss_pred hhhhhhhhccchhhHHHHHHhhh
Q 034518 54 EMSFCVESMLPYHTATASALSTS 76 (92)
Q Consensus 54 el~~cveSllPlHsAvAsArltS 76 (92)
.+++-||-|||-|-.|=.-|.|+
T Consensus 47 ~isf~VeFmLP~~hTVRLIrvta 69 (73)
T 1p65_A 47 RISYTVEFSLPTHHTVRLIRVTA 69 (73)
T ss_dssp CEEEEEEECCCHHHHHHHHHHC-
T ss_pred ceeEEEEEecccceEEEEEEecc
Confidence 34566999999988775555443
No 8
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=2.53 E-value=4.2e+02 Score=14.37 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=8.3
Q ss_pred hccchhhHHHH
Q 034518 61 SMLPYHTATAS 71 (92)
Q Consensus 61 SllPlHsAvAs 71 (92)
..-|||.|+-.
T Consensus 35 g~t~L~~A~~~ 45 (93)
T 1n0q_A 35 GRTPLHLAARN 45 (93)
T ss_dssp SCCHHHHHHHT
T ss_pred CCCHHHHHHHc
Confidence 46799998754
No 9
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=2.36 E-value=2.4e+02 Score=18.56 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=10.4
Q ss_pred hhhhhhccchhhH
Q 034518 56 SFCVESMLPYHTA 68 (92)
Q Consensus 56 ~~cveSllPlHsA 68 (92)
+.+||-..||||-
T Consensus 50 gvGVEr~fpl~SP 62 (98)
T 2ftc_K 50 GQGVEICFELYNP 62 (98)
T ss_pred CceEEEEEecCCC
Confidence 3469999999984
No 10
>2bcx_B Ryanodine receptor 1; EF-hand, type-2 turn, calcium binding protein; 2.00A {Gallus gallus}
Probab=2.35 E-value=3.8e+02 Score=14.24 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.4
Q ss_pred hccchhh
Q 034518 61 SMLPYHT 67 (92)
Q Consensus 61 SllPlHs 67 (92)
-|.|||+
T Consensus 24 rm~pLy~ 30 (30)
T 2bcx_B 24 RMTPLYN 30 (30)
T ss_dssp HHCC---
T ss_pred hhccccC
Confidence 4667763
Done!