Query 034518
Match_columns 92
No_of_seqs 102 out of 107
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 05:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034518.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034518hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pf5a1 d.169.1.4 (A:1-95) TSG 7.3 52 0.0038 19.7 0.4 14 78-91 42-55 (95)
2 d1ixva_ d.211.1.1 (A:) 26S pro 6.1 80 0.0058 18.6 0.8 10 63-72 2-11 (229)
3 d2gycn1 b.34.5.6 (N:1-114) Rib 4.6 51 0.0037 20.8 -1.0 13 56-68 66-78 (114)
4 d1n11a_ d.211.1.1 (A:) Ankyrin 4.5 1E+02 0.0074 19.7 0.5 10 62-71 1-10 (408)
5 d1b12a_ b.87.1.2 (A:) Type 1 s 4.4 54 0.0039 21.1 -1.0 12 79-90 202-213 (247)
6 d2cp8a1 a.5.2.1 (A:8-48) Migra 3.7 1E+02 0.0075 16.4 0.0 8 51-58 8-15 (41)
7 d1k1aa_ d.211.1.1 (A:) bcl-3 { 3.6 1.4E+02 0.0099 16.5 0.5 12 62-73 4-15 (228)
8 d2zjrm1 b.34.5.6 (M:2-109) Rib 3.5 62 0.0045 20.2 -1.2 20 48-68 66-85 (108)
9 d2j9ga2 c.30.1.1 (A:1-114) Bio 3.4 3E+02 0.022 16.6 2.2 32 59-91 57-88 (114)
10 d1uuha_ d.169.1.4 (A:) CD44, h 2.9 2E+02 0.014 18.5 0.8 13 78-91 53-65 (150)
No 1
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.29 E-value=52 Score=19.72 Aligned_cols=14 Identities=29% Similarity=1.047 Sum_probs=11.3
Q ss_pred hccccccccccCCC
Q 034518 78 LSISQCGYGWLPEG 91 (92)
Q Consensus 78 Lsv~s~~~~~Lsqg 91 (92)
.+.+-.++|||.+|
T Consensus 42 ~G~~~C~~GWl~d~ 55 (95)
T d2pf5a1 42 IGFHVCAAGWMAKG 55 (95)
T ss_dssp TTCCCCSCEECGGG
T ss_pred cCcccccccccCCC
Confidence 46788889999876
No 2
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.06 E-value=80 Score=18.59 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=6.8
Q ss_pred cchhhHHHHH
Q 034518 63 LPYHTATASA 72 (92)
Q Consensus 63 lPlHsAvAsA 72 (92)
.|||.|+...
T Consensus 2 ~pLh~A~~~g 11 (229)
T d1ixva_ 2 YPLHQACMEN 11 (229)
T ss_dssp CHHHHHHHHT
T ss_pred HhHHHHHHcC
Confidence 4777777764
No 3
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}
Probab=4.55 E-value=51 Score=20.76 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=11.0
Q ss_pred hhhhhhccchhhH
Q 034518 56 SFCVESMLPYHTA 68 (92)
Q Consensus 56 ~~cveSllPlHsA 68 (92)
|.+||=..||||-
T Consensus 66 GvGVEr~fpl~SP 78 (114)
T d2gycn1 66 GEGVERVFQTHSP 78 (114)
T ss_dssp CSSSCCCCCCCSS
T ss_pred CccEEEEEEeCCC
Confidence 5579999999984
No 4
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.46 E-value=1e+02 Score=19.67 Aligned_cols=10 Identities=30% Similarity=0.511 Sum_probs=6.2
Q ss_pred ccchhhHHHH
Q 034518 62 MLPYHTATAS 71 (92)
Q Consensus 62 llPlHsAvAs 71 (92)
|-|||.|+..
T Consensus 1 ~TpL~~Aa~~ 10 (408)
T d1n11a_ 1 LTPLHVASFM 10 (408)
T ss_dssp CCHHHHHHHH
T ss_pred CChHHHHHHC
Confidence 4577777653
No 5
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=4.43 E-value=54 Score=21.07 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=6.4
Q ss_pred ccccccccccCC
Q 034518 79 SISQCGYGWLPE 90 (92)
Q Consensus 79 sv~s~~~~~Lsq 90 (92)
|.|||-||-+|+
T Consensus 202 S~DSR~wG~Vp~ 213 (247)
T d1b12a_ 202 SADSRYWGFVPE 213 (247)
T ss_dssp CCCHHHHCCEEG
T ss_pred CccccccCcCCH
Confidence 455555555554
No 6
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.72 E-value=1e+02 Score=16.42 Aligned_cols=8 Identities=50% Similarity=1.016 Sum_probs=6.2
Q ss_pred chhhhhhh
Q 034518 51 SPVEMSFC 58 (92)
Q Consensus 51 ~p~el~~c 58 (92)
..+|||||
T Consensus 8 ~L~EMGF~ 15 (41)
T d2cp8a1 8 HLFEMGFC 15 (41)
T ss_dssp HHHHHTCC
T ss_pred HHHHhCcc
Confidence 45788988
No 7
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.64 E-value=1.4e+02 Score=16.46 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=8.6
Q ss_pred ccchhhHHHHHH
Q 034518 62 MLPYHTATASAL 73 (92)
Q Consensus 62 llPlHsAvAsAr 73 (92)
.-|||.|+....
T Consensus 4 ~TpLh~A~~~g~ 15 (228)
T d1k1aa_ 4 DTPLHIAVVQGN 15 (228)
T ss_dssp CCHHHHHHHTTC
T ss_pred ccHHHHHHHcCC
Confidence 568998886543
No 8
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}
Probab=3.50 E-value=62 Score=20.15 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=13.8
Q ss_pred hhhchhhhhhhhhhccchhhH
Q 034518 48 ALRSPVEMSFCVESMLPYHTA 68 (92)
Q Consensus 48 ~~R~p~el~~cveSllPlHsA 68 (92)
+.|.-+ -|.+||=..||||-
T Consensus 66 tvRki~-~g~GVEr~fpl~SP 85 (108)
T d2zjrm1 66 TVRKIS-FGEGVERVFPFASP 85 (108)
T ss_dssp EEEEEE-TTEEEEEEEETTCT
T ss_pred EEEEEe-cCccEEEEEEcCCC
Confidence 345533 35579999999984
No 9
>d2j9ga2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.45 E-value=3e+02 Score=16.57 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=27.3
Q ss_pred hhhccchhhHHHHHHhhhhhccccccccccCCC
Q 034518 59 VESMLPYHTATASALSTSLLSISQCGYGWLPEG 91 (92)
Q Consensus 59 veSllPlHsAvAsArltS~Lsv~s~~~~~Lsqg 91 (92)
.++.|-...-+..|+-+-+-.|.. .||.|||.
T Consensus 57 ~~sYl~~~~Ii~~A~~~~~dAiHP-GyGFLSEn 88 (114)
T d2j9ga2 57 VKSYLNIPAIISAAEITGAVAIHP-GYGFLSEN 88 (114)
T ss_dssp GGTTTCHHHHHHHHHHHTCSEEEC-CSSTTTTC
T ss_pred hhhhcCHHHHHHHHHHhCCceeec-chhhhhhh
Confidence 567888888889999999999988 89999984
No 10
>d1uuha_ d.169.1.4 (A:) CD44, hyaluronan binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.85 E-value=2e+02 Score=18.46 Aligned_cols=13 Identities=38% Similarity=1.175 Sum_probs=9.7
Q ss_pred hccccccccccCCC
Q 034518 78 LSISQCGYGWLPEG 91 (92)
Q Consensus 78 Lsv~s~~~~~Lsqg 91 (92)
.+.+-..|||| +|
T Consensus 53 ~G~~~C~~GWl-~g 65 (150)
T d1uuha_ 53 IGFETCRYGFI-EG 65 (150)
T ss_dssp TTCCCSSCEEE-TT
T ss_pred cCcceeccccc-CC
Confidence 46777888998 55
Done!