Query 034521
Match_columns 92
No_of_seqs 123 out of 1565
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13499 EF-hand_7: EF-hand do 99.7 2.4E-17 5.2E-22 86.9 8.1 66 12-78 1-66 (66)
2 KOG0034 Ca2+/calmodulin-depend 99.7 6.4E-16 1.4E-20 96.4 8.4 78 10-87 103-185 (187)
3 COG5126 FRQ1 Ca2+-binding prot 99.6 2.4E-15 5.3E-20 91.4 8.2 69 8-81 89-157 (160)
4 cd05022 S-100A13 S-100A13: S-1 99.6 3.3E-15 7.1E-20 83.3 7.8 70 7-81 4-76 (89)
5 cd05027 S-100B S-100B: S-100B 99.6 4E-14 8.7E-19 78.8 9.0 68 8-80 5-79 (88)
6 KOG0027 Calmodulin and related 99.5 7.4E-14 1.6E-18 84.5 8.4 66 10-80 84-149 (151)
7 cd05031 S-100A10_like S-100A10 99.5 2.2E-13 4.8E-18 76.6 8.4 72 7-82 4-81 (94)
8 KOG0027 Calmodulin and related 99.5 3.1E-13 6.7E-18 81.8 8.7 70 9-83 6-75 (151)
9 smart00027 EH Eps15 homology d 99.5 2E-13 4.3E-18 77.0 7.2 68 9-83 8-75 (96)
10 cd05026 S-100Z S-100Z: S-100Z 99.5 6E-13 1.3E-17 74.8 8.6 73 5-81 4-82 (93)
11 cd05025 S-100A1 S-100A1: S-100 99.5 8.2E-13 1.8E-17 73.9 8.7 70 7-81 5-81 (92)
12 cd05029 S-100A6 S-100A6: S-100 99.5 1.1E-12 2.4E-17 73.1 8.7 72 5-81 4-80 (88)
13 cd00213 S-100 S-100: S-100 dom 99.4 1.1E-12 2.3E-17 72.8 8.1 73 6-82 3-81 (88)
14 cd00052 EH Eps15 homology doma 99.4 3.5E-12 7.7E-17 66.9 7.5 61 14-81 2-62 (67)
15 PF13833 EF-hand_8: EF-hand do 99.3 6.4E-12 1.4E-16 63.7 6.3 52 24-80 1-53 (54)
16 cd00051 EFh EF-hand, calcium b 99.3 1.5E-11 3.2E-16 62.6 7.4 61 13-78 2-62 (63)
17 KOG0028 Ca2+-binding protein ( 99.3 1.1E-11 2.4E-16 75.0 7.7 68 9-81 104-171 (172)
18 cd00252 SPARC_EC SPARC_EC; ext 99.3 2.1E-11 4.5E-16 71.0 8.4 65 7-80 44-108 (116)
19 PF14658 EF-hand_9: EF-hand do 99.3 1.1E-11 2.3E-16 65.1 6.5 61 15-80 2-64 (66)
20 cd05023 S-100A11 S-100A11: S-1 99.3 3E-11 6.5E-16 67.4 8.7 71 6-80 4-80 (89)
21 COG5126 FRQ1 Ca2+-binding prot 99.3 1.4E-11 3E-16 75.1 7.9 66 9-80 18-83 (160)
22 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.6E-11 3.4E-16 77.0 5.6 74 8-81 97-176 (193)
23 PTZ00183 centrin; Provisional 99.2 1.2E-10 2.6E-15 70.0 9.0 67 10-81 89-155 (158)
24 PTZ00184 calmodulin; Provision 99.2 1.3E-10 2.9E-15 69.0 8.7 65 10-79 83-147 (149)
25 PTZ00184 calmodulin; Provision 99.2 1.6E-10 3.5E-15 68.6 8.9 69 7-80 7-75 (149)
26 KOG0038 Ca2+-binding kinase in 99.2 4.8E-11 1E-15 71.6 6.3 73 10-82 107-179 (189)
27 PTZ00183 centrin; Provisional 99.2 3.3E-10 7.2E-15 68.1 9.0 67 8-79 14-80 (158)
28 cd05030 calgranulins Calgranul 99.2 2.7E-10 5.8E-15 63.4 7.7 70 8-81 5-80 (88)
29 KOG0028 Ca2+-binding protein ( 99.2 2.9E-10 6.3E-15 68.9 7.5 70 6-80 28-97 (172)
30 KOG0030 Myosin essential light 99.1 5.2E-10 1.1E-14 66.4 7.7 45 9-54 9-53 (152)
31 KOG0037 Ca2+-binding protein, 99.1 8E-10 1.7E-14 69.9 8.2 66 10-80 123-188 (221)
32 KOG0031 Myosin regulatory ligh 99.1 2.1E-09 4.5E-14 64.9 9.2 75 9-84 30-133 (171)
33 KOG0031 Myosin regulatory ligh 99.0 4.3E-09 9.3E-14 63.6 8.1 67 9-80 99-165 (171)
34 PF00036 EF-hand_1: EF hand; 98.9 2.5E-09 5.4E-14 47.8 3.5 28 13-40 2-29 (29)
35 KOG0041 Predicted Ca2+-binding 98.9 1.4E-08 3.1E-13 63.8 7.3 66 10-80 98-163 (244)
36 PLN02964 phosphatidylserine de 98.8 2.2E-08 4.8E-13 72.3 8.3 64 12-80 180-243 (644)
37 KOG0044 Ca2+ sensor (EF-Hand s 98.8 9.5E-09 2.1E-13 64.5 5.6 67 10-81 63-129 (193)
38 cd05024 S-100A10 S-100A10: A s 98.8 3.5E-08 7.6E-13 55.1 5.9 68 9-81 6-77 (91)
39 KOG0030 Myosin essential light 98.8 5.4E-08 1.2E-12 57.9 6.9 62 11-78 88-149 (152)
40 PF13405 EF-hand_6: EF-hand do 98.8 1.7E-08 3.6E-13 45.6 3.7 29 12-40 1-30 (31)
41 KOG0377 Protein serine/threoni 98.7 6.1E-08 1.3E-12 67.2 7.4 68 12-83 548-618 (631)
42 PRK12309 transaldolase/EF-hand 98.7 1.1E-07 2.4E-12 65.4 6.9 59 4-80 327-385 (391)
43 KOG0036 Predicted mitochondria 98.7 1.4E-07 3E-12 64.8 7.1 66 10-80 81-146 (463)
44 PLN02964 phosphatidylserine de 98.6 2.4E-07 5.1E-12 67.1 7.9 67 10-82 142-209 (644)
45 KOG0036 Predicted mitochondria 98.6 2.3E-07 4.9E-12 63.7 7.3 71 8-83 11-82 (463)
46 KOG4065 Uncharacterized conser 98.6 2.2E-07 4.7E-12 53.9 5.8 63 15-77 71-142 (144)
47 PF00036 EF-hand_1: EF hand; 98.6 1.1E-07 2.4E-12 42.3 3.3 26 55-80 3-28 (29)
48 PF12763 EF-hand_4: Cytoskelet 98.6 7.3E-07 1.6E-11 51.0 7.3 62 10-79 9-70 (104)
49 PF13202 EF-hand_5: EF hand; P 98.5 2.3E-07 4.9E-12 39.9 3.2 25 13-37 1-25 (25)
50 KOG0037 Ca2+-binding protein, 98.5 1.7E-06 3.8E-11 54.9 7.8 77 9-85 55-157 (221)
51 KOG0040 Ca2+-binding actin-bun 98.3 4.6E-06 9.9E-11 64.8 7.4 71 7-82 2249-2326(2399)
52 KOG4251 Calcium binding protei 98.3 3E-06 6.5E-11 55.2 5.5 68 6-78 96-166 (362)
53 PF14788 EF-hand_10: EF hand; 98.2 1.2E-05 2.6E-10 40.2 5.5 48 27-79 1-48 (51)
54 PF13202 EF-hand_5: EF hand; P 98.2 3.7E-06 8E-11 36.1 3.2 24 55-78 2-25 (25)
55 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.1E-06 2.4E-11 51.0 1.6 63 8-77 51-113 (113)
56 KOG0046 Ca2+-binding actin-bun 98.1 2E-05 4.2E-10 55.9 7.3 68 10-80 18-85 (627)
57 KOG4223 Reticulocalbin, calume 98.0 2E-05 4.2E-10 52.8 5.9 70 6-79 158-227 (325)
58 KOG0034 Ca2+/calmodulin-depend 98.0 4.6E-05 1E-09 47.9 7.1 63 14-80 69-132 (187)
59 PF13405 EF-hand_6: EF-hand do 98.0 1.2E-05 2.5E-10 36.1 3.2 25 55-79 3-27 (31)
60 KOG4223 Reticulocalbin, calume 98.0 1.4E-05 3E-10 53.5 4.7 68 7-79 73-140 (325)
61 smart00054 EFh EF-hand, calciu 97.7 6.3E-05 1.4E-09 31.7 3.4 27 13-39 2-28 (29)
62 PF13833 EF-hand_8: EF-hand do 97.7 6.6E-05 1.4E-09 37.5 3.1 32 8-39 22-53 (54)
63 PF13499 EF-hand_7: EF-hand do 97.5 0.0003 6.5E-09 36.4 4.1 30 8-37 37-66 (66)
64 KOG0377 Protein serine/threoni 97.4 0.0011 2.4E-08 46.7 7.1 69 13-81 466-576 (631)
65 KOG3866 DNA-binding protein of 97.3 0.00095 2.1E-08 45.1 5.8 70 14-83 247-327 (442)
66 KOG2243 Ca2+ release channel ( 97.2 0.00082 1.8E-08 53.0 5.0 59 17-81 4063-4121(5019)
67 smart00054 EFh EF-hand, calciu 97.2 0.00071 1.5E-08 28.2 3.0 25 56-80 4-28 (29)
68 KOG1029 Endocytic adaptor prot 97.2 0.00046 9.9E-09 51.3 3.5 66 9-81 193-258 (1118)
69 PF09279 EF-hand_like: Phospho 97.0 0.0069 1.5E-07 32.8 6.6 68 13-81 2-70 (83)
70 KOG3555 Ca2+-binding proteogly 96.9 0.0022 4.8E-08 43.8 4.6 68 6-82 245-312 (434)
71 KOG4666 Predicted phosphate ac 96.9 0.004 8.7E-08 42.3 5.7 36 12-47 260-295 (412)
72 KOG0042 Glycerol-3-phosphate d 96.7 0.0059 1.3E-07 44.2 5.6 66 10-80 592-657 (680)
73 cd05022 S-100A13 S-100A13: S-1 96.6 0.0048 1E-07 34.3 4.1 30 11-40 47-76 (89)
74 KOG1955 Ral-GTPase effector RA 96.6 0.01 2.2E-07 42.5 6.2 66 7-79 227-292 (737)
75 KOG4666 Predicted phosphate ac 96.6 0.0041 8.9E-08 42.3 4.0 69 7-81 292-360 (412)
76 KOG4578 Uncharacterized conser 96.5 0.00099 2.2E-08 45.2 1.0 66 11-80 333-398 (421)
77 cd05026 S-100Z S-100Z: S-100Z 96.5 0.0077 1.7E-07 33.6 4.3 31 10-40 52-82 (93)
78 KOG2643 Ca2+ binding protein, 96.4 0.0015 3.3E-08 45.7 1.2 52 26-81 403-454 (489)
79 KOG0035 Ca2+-binding actin-bun 96.3 0.025 5.5E-07 42.9 7.2 73 8-81 744-817 (890)
80 PF14788 EF-hand_10: EF hand; 96.3 0.015 3.2E-07 29.0 4.2 30 11-40 21-50 (51)
81 cd05023 S-100A11 S-100A11: S-1 96.2 0.011 2.5E-07 32.7 3.9 30 11-40 52-81 (89)
82 cd05030 calgranulins Calgranul 96.2 0.014 3E-07 32.2 4.1 31 10-40 50-80 (88)
83 cd05029 S-100A6 S-100A6: S-100 96.2 0.0093 2E-07 33.0 3.4 33 8-40 48-80 (88)
84 KOG2643 Ca2+ binding protein, 96.2 0.09 2E-06 37.2 8.8 65 10-77 317-381 (489)
85 cd00252 SPARC_EC SPARC_EC; ext 96.1 0.011 2.4E-07 34.4 3.8 27 11-37 80-106 (116)
86 smart00027 EH Eps15 homology d 96.1 0.02 4.4E-07 31.9 4.7 38 45-83 4-41 (96)
87 KOG0038 Ca2+-binding kinase in 96.1 0.013 2.9E-07 35.7 4.0 63 11-80 74-136 (189)
88 cd05031 S-100A10_like S-100A10 96.1 0.014 3E-07 32.4 3.8 32 9-40 49-80 (94)
89 cd05025 S-100A1 S-100A1: S-100 96.0 0.021 4.5E-07 31.6 4.2 31 10-40 51-81 (92)
90 cd05024 S-100A10 S-100A10: A s 95.9 0.019 4.2E-07 32.1 4.0 30 11-40 48-77 (91)
91 KOG4251 Calcium binding protei 95.9 0.027 5.9E-07 37.2 5.2 62 10-76 280-341 (362)
92 cd00052 EH Eps15 homology doma 95.9 0.025 5.3E-07 28.8 4.2 31 10-40 32-62 (67)
93 KOG2562 Protein phosphatase 2 95.9 0.026 5.7E-07 39.9 5.3 64 13-80 280-343 (493)
94 PF09069 EF-hand_3: EF-hand; 95.9 0.12 2.6E-06 28.9 7.0 70 9-81 1-76 (90)
95 cd00051 EFh EF-hand, calcium b 95.8 0.0091 2E-07 29.3 2.2 29 9-37 34-62 (63)
96 KOG0169 Phosphoinositide-speci 95.7 0.041 9E-07 41.0 6.0 72 6-82 131-202 (746)
97 cd05027 S-100B S-100B: S-100B 95.7 0.015 3.2E-07 32.2 2.9 31 10-40 50-80 (88)
98 KOG0751 Mitochondrial aspartat 95.6 0.054 1.2E-06 39.0 5.9 70 11-81 108-208 (694)
99 KOG1707 Predicted Ras related/ 95.4 0.24 5.3E-06 36.3 8.7 42 7-48 191-232 (625)
100 cd00213 S-100 S-100: S-100 dom 95.3 0.053 1.2E-06 29.5 4.2 31 10-40 50-80 (88)
101 KOG2562 Protein phosphatase 2 95.0 0.046 9.9E-07 38.8 4.1 65 12-76 352-420 (493)
102 PF05042 Caleosin: Caleosin re 94.9 0.26 5.7E-06 30.7 6.8 68 12-80 8-124 (174)
103 PF12763 EF-hand_4: Cytoskelet 94.5 0.093 2E-06 30.0 4.0 31 10-40 42-72 (104)
104 PRK12309 transaldolase/EF-hand 94.3 0.09 2E-06 36.7 4.2 28 13-40 359-386 (391)
105 PF05517 p25-alpha: p25-alpha 94.2 0.6 1.3E-05 28.4 7.3 62 15-80 6-69 (154)
106 KOG0751 Mitochondrial aspartat 94.0 0.22 4.7E-06 36.1 5.6 58 19-83 82-139 (694)
107 PF14658 EF-hand_9: EF-hand do 93.6 0.22 4.8E-06 26.2 3.9 31 10-40 34-65 (66)
108 KOG1029 Endocytic adaptor prot 91.7 0.64 1.4E-05 35.5 5.5 59 16-81 18-78 (1118)
109 KOG0041 Predicted Ca2+-binding 91.5 0.76 1.7E-05 29.6 5.0 73 1-75 125-198 (244)
110 KOG1707 Predicted Ras related/ 90.6 0.47 1E-05 34.9 3.9 64 7-78 311-375 (625)
111 KOG4347 GTPase-activating prot 90.4 0.73 1.6E-05 34.2 4.7 59 10-74 554-612 (671)
112 PF05042 Caleosin: Caleosin re 90.0 2.7 5.8E-05 26.3 6.4 70 10-79 95-165 (174)
113 PF10591 SPARC_Ca_bdg: Secrete 88.2 0.72 1.6E-05 26.6 2.9 25 11-35 88-112 (113)
114 PF08726 EFhand_Ca_insen: Ca2+ 88.2 0.8 1.7E-05 24.3 2.8 27 10-37 5-31 (69)
115 TIGR01848 PHA_reg_PhaR polyhyd 87.9 0.96 2.1E-05 26.0 3.2 66 18-83 10-80 (107)
116 PF08976 DUF1880: Domain of un 87.8 0.58 1.2E-05 27.4 2.3 32 44-79 3-34 (118)
117 KOG0998 Synaptic vesicle prote 87.4 0.26 5.7E-06 37.7 0.9 64 9-79 281-344 (847)
118 KOG2871 Uncharacterized conser 86.6 0.51 1.1E-05 33.0 1.9 65 7-76 305-370 (449)
119 PF09068 EF-hand_2: EF hand; 86.5 4.9 0.00011 23.7 7.3 66 13-78 43-123 (127)
120 KOG1954 Endocytosis/signaling 83.6 2.4 5.3E-05 30.1 4.1 46 23-75 455-500 (532)
121 cd07313 terB_like_2 tellurium 83.5 2.7 5.8E-05 23.4 3.7 54 23-80 11-65 (104)
122 PF09068 EF-hand_2: EF hand; 82.7 2.3 4.9E-05 25.2 3.2 31 10-40 96-126 (127)
123 PF12213 Dpoe2NT: DNA polymera 82.3 5.8 0.00013 21.2 6.8 68 7-80 3-72 (73)
124 PF06648 DUF1160: Protein of u 81.4 7.6 0.00016 22.9 5.0 45 7-54 33-77 (122)
125 PLN02230 phosphoinositide phos 80.5 22 0.00047 26.6 8.3 70 10-81 28-103 (598)
126 KOG0040 Ca2+-binding actin-bun 80.2 7 0.00015 32.6 5.8 57 12-73 2297-2354(2399)
127 PF00404 Dockerin_1: Dockerin 79.9 3.2 7E-05 16.7 2.6 16 21-36 1-16 (21)
128 PF07308 DUF1456: Protein of u 79.6 7.1 0.00015 20.5 6.4 56 9-78 4-59 (68)
129 TIGR03573 WbuX N-acetyl sugar 77.9 9.9 0.00021 26.1 5.5 43 25-78 300-342 (343)
130 KOG4004 Matricellular protein 76.9 1.6 3.4E-05 28.1 1.4 56 17-79 193-249 (259)
131 KOG0039 Ferric reductase, NADH 74.0 10 0.00022 28.5 5.0 71 9-80 16-89 (646)
132 PF08414 NADPH_Ox: Respiratory 73.7 14 0.00031 21.0 6.2 61 12-79 31-91 (100)
133 PF01885 PTS_2-RNA: RNA 2'-pho 71.8 22 0.00048 22.4 5.6 45 9-54 8-58 (186)
134 PLN02952 phosphoinositide phos 71.0 21 0.00045 26.8 6.0 53 24-81 13-66 (599)
135 PF07879 PHB_acc_N: PHB/PHA ac 71.0 3.4 7.3E-05 21.6 1.5 22 18-39 10-31 (64)
136 PLN02223 phosphoinositide phos 70.8 40 0.00088 25.0 7.8 72 10-82 15-94 (537)
137 PLN02952 phosphoinositide phos 70.5 43 0.00094 25.2 8.6 70 11-81 38-111 (599)
138 PLN02222 phosphoinositide phos 69.6 42 0.00091 25.1 7.2 65 10-81 24-91 (581)
139 KOG4065 Uncharacterized conser 69.6 7.9 0.00017 22.9 3.0 29 8-36 114-142 (144)
140 KOG3442 Uncharacterized conser 69.3 14 0.00029 22.0 3.9 45 23-69 51-95 (132)
141 PRK00819 RNA 2'-phosphotransfe 67.2 29 0.00062 21.8 5.9 47 7-54 7-59 (179)
142 PF12174 RST: RCD1-SRO-TAF4 (R 66.8 7.3 0.00016 20.6 2.3 46 27-80 8-53 (70)
143 PRK00523 hypothetical protein; 66.6 18 0.00039 19.3 4.0 30 24-54 36-65 (72)
144 PF03672 UPF0154: Uncharacteri 66.5 17 0.00037 19.0 4.0 29 25-54 29-57 (64)
145 PLN02228 Phosphoinositide phos 66.0 54 0.0012 24.5 7.7 67 9-81 22-93 (567)
146 cd07316 terB_like_DjlA N-termi 64.7 22 0.00047 19.6 5.1 54 23-80 11-64 (106)
147 PF11020 DUF2610: Domain of un 62.7 14 0.0003 20.2 2.9 41 34-78 35-75 (82)
148 TIGR01639 P_fal_TIGR01639 Plas 61.3 21 0.00045 18.2 4.5 34 25-59 7-40 (61)
149 KOG4004 Matricellular protein 59.0 6.8 0.00015 25.4 1.5 28 10-37 221-248 (259)
150 COG5562 Phage envelope protein 58.3 13 0.00028 22.4 2.5 27 62-88 82-109 (137)
151 PF09336 Vps4_C: Vps4 C termin 58.1 20 0.00043 18.4 3.0 27 27-54 29-55 (62)
152 PRK01844 hypothetical protein; 57.8 28 0.00061 18.6 4.0 29 25-54 36-64 (72)
153 KOG3449 60S acidic ribosomal p 57.5 36 0.00078 19.8 6.6 53 14-76 4-56 (112)
154 PF02864 STAT_bind: STAT prote 57.0 23 0.00051 23.6 3.8 52 25-76 176-231 (254)
155 KOG3555 Ca2+-binding proteogly 56.9 29 0.00063 24.4 4.3 71 5-80 205-278 (434)
156 KOG4578 Uncharacterized conser 54.5 11 0.00025 26.2 2.1 31 10-40 369-399 (421)
157 KOG4403 Cell surface glycoprot 53.8 58 0.0013 23.7 5.4 31 10-40 67-97 (575)
158 KOG4347 GTPase-activating prot 53.6 24 0.00052 26.7 3.7 28 53-80 556-583 (671)
159 COG4103 Uncharacterized protei 53.6 47 0.001 20.3 4.3 58 15-80 34-94 (148)
160 PF09312 SurA_N: SurA N-termin 52.8 43 0.00092 19.2 4.9 36 42-83 64-99 (118)
161 PF07128 DUF1380: Protein of u 52.2 44 0.00095 20.2 4.1 59 28-91 27-91 (139)
162 KOG3866 DNA-binding protein of 52.2 15 0.00032 25.5 2.3 37 44-80 223-272 (442)
163 PF05099 TerB: Tellurite resis 51.7 8.3 0.00018 22.4 1.0 15 24-38 36-50 (140)
164 KOG0506 Glutaminase (contains 51.4 88 0.0019 23.2 6.0 64 15-80 90-158 (622)
165 PF08461 HTH_12: Ribonuclease 51.1 31 0.00067 17.8 3.0 38 23-65 9-46 (66)
166 PRK09430 djlA Dna-J like membr 50.7 60 0.0013 21.6 5.0 54 22-80 66-120 (267)
167 smart00549 TAFH TAF homology. 50.7 44 0.00096 18.7 4.1 15 66-80 37-51 (92)
168 KOG1955 Ral-GTPase effector RA 49.3 21 0.00045 26.4 2.8 32 9-40 263-294 (737)
169 TIGR00988 hip integration host 49.3 28 0.0006 19.0 2.8 45 29-74 2-48 (94)
170 COG3763 Uncharacterized protei 49.2 41 0.00088 17.9 4.1 30 24-54 35-64 (71)
171 KOG0169 Phosphoinositide-speci 49.1 1.3E+02 0.0027 23.5 6.8 31 10-40 171-201 (746)
172 KOG1265 Phospholipase C [Lipid 48.9 1.4E+02 0.003 24.1 7.0 64 12-80 222-299 (1189)
173 PF07492 Trehalase_Ca-bi: Neut 48.1 5.3 0.00012 17.6 -0.2 17 57-73 4-20 (30)
174 COG4860 Uncharacterized protei 45.8 70 0.0015 19.6 4.6 37 27-66 93-129 (170)
175 PF09373 PMBR: Pseudomurein-bi 43.6 32 0.0007 15.1 2.1 16 25-40 2-17 (33)
176 COG5394 Uncharacterized protei 43.0 39 0.00084 21.2 2.9 62 18-82 19-89 (193)
177 PF11116 DUF2624: Protein of u 43.0 59 0.0013 18.0 6.1 28 26-54 13-40 (85)
178 KOG2301 Voltage-gated Ca2+ cha 42.6 9.9 0.00021 31.6 0.4 67 10-82 1416-1486(1592)
179 PF14513 DAG_kinase_N: Diacylg 42.5 76 0.0016 19.1 5.0 45 10-54 24-75 (138)
180 KOG0998 Synaptic vesicle prote 41.9 19 0.0004 28.1 1.8 63 11-80 11-73 (847)
181 COG1508 RpoN DNA-directed RNA 41.9 95 0.0021 22.6 5.1 52 22-77 120-171 (444)
182 PF03979 Sigma70_r1_1: Sigma-7 40.0 48 0.001 17.8 2.8 38 12-54 8-45 (82)
183 PF12486 DUF3702: ImpA domain 39.9 62 0.0014 19.7 3.5 47 5-51 60-112 (148)
184 PRK03095 prsA peptidylprolyl i 39.9 1.1E+02 0.0025 20.4 5.8 38 24-61 31-84 (287)
185 PF01023 S_100: S-100/ICaBP ty 39.6 46 0.001 15.7 4.4 31 50-80 5-36 (44)
186 PF02761 Cbl_N2: CBL proto-onc 39.3 69 0.0015 17.7 4.9 46 25-75 20-65 (85)
187 PF04963 Sigma54_CBD: Sigma-54 38.7 86 0.0019 19.7 4.2 50 22-76 45-94 (194)
188 PF13624 SurA_N_3: SurA N-term 38.1 81 0.0018 18.5 3.9 42 38-83 94-135 (154)
189 PF12872 OST-HTH: OST-HTH/LOTU 38.0 59 0.0013 16.5 4.9 51 10-78 7-57 (74)
190 KOG4301 Beta-dystrobrevin [Cyt 37.9 68 0.0015 22.6 3.8 63 11-79 110-172 (434)
191 COG2979 Uncharacterized protei 37.3 1.2E+02 0.0026 19.9 4.5 34 22-56 121-154 (225)
192 PRK01060 endonuclease IV; Prov 37.2 49 0.0011 21.5 3.0 27 65-91 233-262 (281)
193 PF13829 DUF4191: Domain of un 37.0 1.1E+02 0.0024 20.0 4.5 32 22-54 162-193 (224)
194 PF04391 DUF533: Protein of un 36.7 61 0.0013 20.6 3.2 19 22-40 90-108 (188)
195 PF04876 Tenui_NCP: Tenuivirus 36.2 1.1E+02 0.0023 19.0 7.9 55 23-80 95-160 (175)
196 PF11590 DNAPolymera_Pol: DNA 35.9 54 0.0012 15.5 2.2 15 6-20 26-40 (41)
197 TIGR02675 tape_meas_nterm tape 35.8 48 0.001 17.5 2.3 17 24-40 27-43 (75)
198 PF07166 DUF1398: Protein of u 35.6 41 0.00088 19.9 2.2 22 59-83 77-98 (125)
199 COG3383 Uncharacterized anaero 35.0 1.1E+02 0.0024 24.2 4.7 44 2-46 704-748 (978)
200 TIGR00624 tag DNA-3-methyladen 34.6 46 0.001 21.0 2.4 44 10-54 52-95 (179)
201 PRK14981 DNA-directed RNA poly 33.9 97 0.0021 17.8 4.5 8 69-76 95-102 (112)
202 PF13592 HTH_33: Winged helix- 33.8 67 0.0015 16.0 3.8 30 25-54 2-31 (60)
203 PF09851 SHOCT: Short C-termin 33.6 49 0.0011 14.3 3.3 15 26-40 15-29 (31)
204 KOG2243 Ca2+ release channel ( 32.7 37 0.00079 29.0 2.1 24 57-80 4062-4085(5019)
205 PF02309 AUX_IAA: AUX/IAA fami 32.5 15 0.00032 23.5 0.0 23 4-26 131-153 (215)
206 cd00086 homeodomain Homeodomai 32.2 65 0.0014 15.3 5.7 39 8-54 10-48 (59)
207 KOG4286 Dystrophin-like protei 32.0 1.2E+02 0.0026 23.9 4.5 51 10-65 469-519 (966)
208 PF11197 DUF2835: Protein of u 31.6 51 0.0011 17.4 1.9 14 68-81 6-19 (68)
209 PF12631 GTPase_Cys_C: Catalyt 31.2 32 0.0007 18.0 1.2 28 13-40 25-52 (73)
210 PF06384 ICAT: Beta-catenin-in 31.0 82 0.0018 17.1 2.7 28 26-54 8-42 (78)
211 KOG2278 RNA:NAD 2'-phosphotran 30.8 65 0.0014 20.5 2.6 33 21-54 28-60 (207)
212 PF06226 DUF1007: Protein of u 30.8 51 0.0011 21.1 2.2 23 18-40 57-79 (212)
213 PRK13210 putative L-xylulose 5 30.1 70 0.0015 20.8 2.9 25 65-89 229-255 (284)
214 PHA02105 hypothetical protein 29.7 88 0.0019 16.1 3.2 49 27-79 4-56 (68)
215 PRK02998 prsA peptidylprolyl i 29.7 1.7E+02 0.0038 19.5 5.7 38 24-61 32-85 (283)
216 PF04282 DUF438: Family of unk 29.5 97 0.0021 16.5 3.5 29 26-54 27-55 (71)
217 PF13075 DUF3939: Protein of u 29.4 13 0.00028 22.5 -0.6 46 27-81 9-54 (140)
218 KOG3077 Uncharacterized conser 29.1 1.8E+02 0.004 19.5 5.0 66 12-82 65-131 (260)
219 PF04157 EAP30: EAP30/Vps36 fa 28.9 1.6E+02 0.0035 18.8 7.4 55 8-66 94-150 (223)
220 PF07531 TAFH: NHR1 homology t 28.8 1.2E+02 0.0026 17.2 4.1 15 66-80 38-52 (96)
221 PF14842 FliG_N: FliG N-termin 28.1 1.2E+02 0.0026 17.1 4.1 48 28-75 30-78 (108)
222 PF03477 ATP-cone: ATP cone do 27.9 87 0.0019 16.7 2.6 31 46-76 33-63 (90)
223 cd07178 terB_like_YebE telluri 27.6 1.2E+02 0.0025 16.8 3.2 18 23-40 11-28 (95)
224 TIGR03234 OH-pyruv-isom hydrox 27.3 89 0.0019 20.0 3.0 24 65-88 214-239 (254)
225 PRK11858 aksA trans-homoaconit 27.3 2.2E+02 0.0048 19.9 6.1 48 32-81 324-371 (378)
226 PF12419 DUF3670: SNF2 Helicas 27.2 1.4E+02 0.0031 17.7 4.7 50 24-77 80-138 (141)
227 PF10437 Lip_prot_lig_C: Bacte 27.2 1.1E+02 0.0024 16.3 4.0 42 30-78 44-86 (86)
228 KOG0046 Ca2+-binding actin-bun 27.1 1.2E+02 0.0026 22.8 3.7 31 10-40 56-86 (627)
229 PF07553 Lipoprotein_Ltp: Host 26.9 89 0.0019 15.2 3.0 30 25-54 16-45 (48)
230 PF14164 YqzH: YqzH-like prote 26.8 1.1E+02 0.0023 16.0 4.5 16 44-59 25-40 (64)
231 PTZ00315 2'-phosphotransferase 26.5 2.9E+02 0.0063 21.0 5.9 46 8-54 380-431 (582)
232 PRK06508 acyl carrier protein; 26.2 1.3E+02 0.0027 16.7 3.8 44 32-79 42-85 (93)
233 PRK09856 fructoselysine 3-epim 26.2 97 0.0021 20.0 3.0 25 65-89 222-248 (275)
234 TIGR02395 rpoN_sigma RNA polym 26.0 2.4E+02 0.0052 20.3 5.1 50 21-77 105-156 (429)
235 COG1082 IolE Sugar phosphate i 25.9 94 0.002 19.9 2.9 27 63-89 223-251 (274)
236 cd07176 terB tellurite resista 25.9 40 0.00087 18.5 1.0 17 24-40 15-31 (111)
237 PLN03007 UDP-glucosyltransfera 25.8 2.3E+02 0.0051 20.4 5.1 55 25-80 422-480 (482)
238 smart00427 H2B Histone H2B. 25.8 1.3E+02 0.0028 16.8 3.9 35 7-41 34-68 (89)
239 PF09808 SNAPc_SNAP43: Small n 25.7 1.5E+02 0.0033 18.5 3.7 17 67-83 17-33 (194)
240 PF11829 DUF3349: Protein of u 25.6 1.4E+02 0.003 16.9 6.4 50 28-79 20-69 (96)
241 PF09832 DUF2059: Uncharacteri 24.7 59 0.0013 16.2 1.5 10 29-38 18-27 (64)
242 PF03705 CheR_N: CheR methyltr 24.4 99 0.0021 14.8 2.4 45 31-80 6-53 (57)
243 PF10891 DUF2719: Protein of u 24.3 34 0.00073 18.6 0.5 17 65-81 32-48 (81)
244 KOG2301 Voltage-gated Ca2+ cha 24.0 87 0.0019 26.5 2.8 39 49-91 1418-1456(1592)
245 COG1460 Uncharacterized protei 23.9 1.6E+02 0.0035 17.2 4.4 25 29-54 81-105 (114)
246 PLN02764 glycosyltransferase f 23.9 2.9E+02 0.0063 20.0 5.2 57 26-82 390-447 (453)
247 PRK05849 hypothetical protein; 23.8 2.4E+02 0.0052 22.2 4.9 24 67-90 502-526 (783)
248 TIGR03296 M6dom_TIGR03296 M6 f 23.7 33 0.00072 23.0 0.5 16 17-32 92-107 (286)
249 COG4867 Uncharacterized protei 23.7 2.2E+02 0.0048 21.0 4.5 54 6-60 180-235 (652)
250 PRK13209 L-xylulose 5-phosphat 23.4 1.1E+02 0.0023 20.0 2.8 24 65-88 228-253 (283)
251 PF01320 Colicin_Pyocin: Colic 22.6 1.5E+02 0.0033 16.3 3.2 33 28-60 10-43 (85)
252 PF10668 Phage_terminase: Phag 22.6 1.1E+02 0.0024 15.7 2.2 32 15-53 11-42 (60)
253 PLN02167 UDP-glycosyltransfera 22.5 3E+02 0.0064 19.9 5.1 55 26-80 417-472 (475)
254 KOG0180 20S proteasome, regula 22.4 1.7E+02 0.0037 18.6 3.3 37 4-40 58-94 (204)
255 PTZ00373 60S Acidic ribosomal 22.4 1.7E+02 0.0038 17.0 5.5 52 15-76 7-58 (112)
256 PF03874 RNA_pol_Rpb4: RNA pol 22.1 1.4E+02 0.003 16.8 2.8 11 68-78 100-110 (117)
257 COG2818 Tag 3-methyladenine DN 22.1 99 0.0021 19.7 2.3 31 10-40 54-84 (188)
258 TIGR00542 hxl6Piso_put hexulos 22.0 1.1E+02 0.0025 19.9 2.8 24 65-88 223-248 (279)
259 KOG2419 Phosphatidylserine dec 21.6 61 0.0013 25.0 1.5 70 9-79 435-532 (975)
260 PRK10353 3-methyl-adenine DNA 21.6 76 0.0016 20.2 1.7 31 10-40 53-83 (187)
261 PF03656 Pam16: Pam16; InterP 21.3 1.9E+02 0.0042 17.1 4.1 41 26-68 53-93 (127)
262 TIGR03249 KdgD 5-dehydro-4-deo 21.3 2.6E+02 0.0057 18.6 5.0 40 23-62 18-72 (296)
263 PRK00059 prsA peptidylprolyl i 21.2 2.7E+02 0.0059 18.8 5.4 40 42-83 107-146 (336)
264 PLN02554 UDP-glycosyltransfera 21.2 2.5E+02 0.0053 20.4 4.4 56 25-80 422-478 (481)
265 PF08735 DUF1786: Putative pyr 21.1 1.5E+02 0.0034 19.8 3.2 27 24-50 196-222 (254)
266 PF08672 APC2: Anaphase promot 21.0 1.4E+02 0.0029 15.2 3.8 31 9-40 13-45 (60)
267 PF08479 POTRA_2: POTRA domain 20.9 1.1E+02 0.0024 15.8 2.1 32 23-54 9-40 (76)
268 PRK03002 prsA peptidylprolyl i 20.9 2.7E+02 0.0058 18.6 5.9 38 24-61 34-87 (285)
269 PF09061 Stirrup: Stirrup; In 20.8 73 0.0016 16.8 1.3 29 25-54 47-75 (79)
270 PRK09989 hypothetical protein; 20.8 1.4E+02 0.003 19.3 2.9 19 65-83 215-233 (258)
271 PF11867 DUF3387: Domain of un 20.6 2.9E+02 0.0064 18.9 4.9 10 72-81 158-167 (335)
272 smart00708 PhBP Insect pheromo 20.5 1.5E+02 0.0033 15.6 4.0 33 47-79 29-62 (103)
273 PF11422 IBP39: Initiator bind 20.3 2.4E+02 0.0053 17.9 7.5 68 12-83 20-90 (181)
274 PRK10788 periplasmic folding c 20.2 3.8E+02 0.0082 20.0 5.8 42 37-83 105-147 (623)
275 cd06403 PB1_Par6 The PB1 domai 20.1 39 0.00085 18.5 0.2 22 59-80 12-33 (80)
No 1
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.74 E-value=2.4e-17 Score=86.95 Aligned_cols=66 Identities=27% Similarity=0.549 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
+++.+|+.+|.|++|+|+.+||..++..+ +...+++++...++.+|+.+|.+++|.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL-GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT-TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 58899999999999999999999999999 8888899999999999999999999999999999875
No 2
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.66 E-value=6.4e-16 Score=96.35 Aligned_cols=78 Identities=31% Similarity=0.493 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CC--c
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS--DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS-GL--K 84 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~-~~--~ 84 (92)
..|++.+|++||.+++|+|+++|+.+++..+.+...+ ++.+..+++..|.++|.++||.|+++||++++.+. .+ +
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~~~~~ 182 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPDLLEK 182 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCccHHHH
Confidence 4699999999999999999999999999988787777 88999999999999999999999999999999887 33 5
Q ss_pred eeE
Q 034521 85 MEV 87 (92)
Q Consensus 85 ~~~ 87 (92)
|++
T Consensus 183 m~~ 185 (187)
T KOG0034|consen 183 MTI 185 (187)
T ss_pred cCC
Confidence 544
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.63 E-value=2.4e-15 Score=91.45 Aligned_cols=69 Identities=30% Similarity=0.443 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
...++++++|+.||.|++|+|+..+|..+++.+ |..+++++++.++ +.+|.+++|.|+|++|++.+...
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-ge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSL-GERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-cccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHhcc
Confidence 457899999999999999999999999999999 9999999999999 99999999999999999987653
No 4
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.63 E-value=3.3e-15 Score=83.34 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhcC-CCCCcccHHHHHHHHHH-hcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 7 HLLLLFLSVIFKVYDS-DCNGKVSFNDILEVLRD-LSGSFMSD-EQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~-~~~G~I~~~el~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
+.-...+..+|+.||. +++|+|+..||+.+++. + |..++. ++++.++ +.+|.|+||.|+|+||+.++.+.
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el-g~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQL-PHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh-hhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 3446678999999999 99999999999999998 6 877887 7888888 99999999999999999988753
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.58 E-value=4e-14 Score=78.84 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 8 LLLLFLSVIFKVYD-SDCNG-KVSFNDILEVLRD-----LSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 8 ~~~~~l~~~F~~~D-~~~~G-~I~~~el~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.-...++.+|+.|| ++++| +|+..||+.+++. + +...+++++++++ +.+|.+++|.|+|++|+.++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 34567899999998 89999 5999999999998 6 8888999999999 9999999999999999988764
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.53 E-value=7.4e-14 Score=84.47 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.+.++.+|+.||.|++|+|+..||+.++..+ |...+.+++..++ +.+|.+++|.|+|++|++++..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSL-GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 3589999999999999999999999999999 9999999999999 9999999999999999998864
No 7
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.51 E-value=2.2e-13 Score=76.57 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHHh----cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 7 HLLLLFLSVIFKVYDS-DC-NGKVSFNDILEVLRDL----SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~-~~-~G~I~~~el~~~l~~~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.....++.+|+.||. ++ +|+|+..|++.+++.. ++..+++++++.++ +.+|.+++|.|+|++|++++..
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 4557789999999997 87 6999999999999862 15577888888888 9999999999999999998876
Q ss_pred CC
Q 034521 81 SG 82 (92)
Q Consensus 81 ~~ 82 (92)
..
T Consensus 80 ~~ 81 (94)
T cd05031 80 LS 81 (94)
T ss_pred HH
Confidence 44
No 8
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.49 E-value=3.1e-13 Score=81.76 Aligned_cols=70 Identities=26% Similarity=0.504 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
....++.+|+.||++++|+|+..+|..+++.+ |..++..++..++ .+.|.+++|.|++++|+.++.+...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~----~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLI----KEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHH----HHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 45779999999999999999999999999999 9999999999999 9999999999999999999987654
No 9
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.49 E-value=2e-13 Score=77.01 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
....++.+|+.+|.+++|+|+.+++..+++.. + ++.+++.+++ +.+|.+++|.|+++||+.++.....
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~--~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G--LPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C--CCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999886 4 6788888888 9999999999999999988765433
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.48 E-value=6e-13 Score=74.77 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=58.1
Q ss_pred hHhHHHHHHHHHHHHhc-CCCCC-cccHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 5 GYHLLLLFLSVIFKVYD-SDCNG-KVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 5 ~~~~~~~~l~~~F~~~D-~~~~G-~I~~~el~~~l~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
..+.-...+..+|+.|| .|++| +|+..||+.+++...+ ...++.++++++ +.+|.+++|.|+|+||+.++
T Consensus 4 ~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 4 QLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHH
Confidence 34445667888899999 78998 5999999999976323 234666777777 99999999999999999988
Q ss_pred hcC
Q 034521 79 GNS 81 (92)
Q Consensus 79 ~~~ 81 (92)
...
T Consensus 80 ~~l 82 (93)
T cd05026 80 AAL 82 (93)
T ss_pred HHH
Confidence 653
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.47 E-value=8.2e-13 Score=73.94 Aligned_cols=70 Identities=11% Similarity=0.238 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHhc-CCCCCc-ccHHHHHHHHHH-hcC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 7 HLLLLFLSVIFKVYD-SDCNGK-VSFNDILEVLRD-LSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D-~~~~G~-I~~~el~~~l~~-~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
+.-...++++|+.|| .+++|+ |+..|++.+++. + | ..++++++++++ +.+|.+++|.|+|++|+.++.
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~l-g~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTEL-SDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHH-HHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHH
Confidence 344577999999997 999995 999999999986 4 4 345778888888 999999999999999999886
Q ss_pred cC
Q 034521 80 NS 81 (92)
Q Consensus 80 ~~ 81 (92)
..
T Consensus 80 ~~ 81 (92)
T cd05025 80 AL 81 (92)
T ss_pred HH
Confidence 53
No 12
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.46 E-value=1.1e-12 Score=73.06 Aligned_cols=72 Identities=17% Similarity=0.397 Sum_probs=61.9
Q ss_pred hHhHHHHHHHHHHHHhcC-CC-CCcccHHHHHHHHHH---hcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 5 GYHLLLLFLSVIFKVYDS-DC-NGKVSFNDILEVLRD---LSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 5 ~~~~~~~~l~~~F~~~D~-~~-~G~I~~~el~~~l~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
..+.....+-..|..||. ++ +|+|+..||+.+++. + |..++++++.+++ +.+|.+++|.|+|+||+.++.
T Consensus 4 ~~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 4 PLDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHH
Confidence 344556678889999997 67 899999999999973 4 8889999999999 999999999999999999886
Q ss_pred cC
Q 034521 80 NS 81 (92)
Q Consensus 80 ~~ 81 (92)
+.
T Consensus 79 ~l 80 (88)
T cd05029 79 AL 80 (88)
T ss_pred HH
Confidence 53
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.45 E-value=1.1e-12 Score=72.77 Aligned_cols=73 Identities=16% Similarity=0.334 Sum_probs=61.0
Q ss_pred HhHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 6 YHLLLLFLSVIFKVYDS--DCNGKVSFNDILEVLRDLSGSFM----SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~--~~~G~I~~~el~~~l~~~~~~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
.+.....++.+|..||. +++|+|+..++..+++..+|..+ +.+++..++ ..+|.+++|.|+|++|+.++.
T Consensus 3 ~~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 3 LEKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHH
Confidence 34556779999999999 89999999999999986325444 477888888 999999999999999999887
Q ss_pred cCC
Q 034521 80 NSG 82 (92)
Q Consensus 80 ~~~ 82 (92)
...
T Consensus 79 ~~~ 81 (88)
T cd00213 79 KLA 81 (88)
T ss_pred HHH
Confidence 643
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.40 E-value=3.5e-12 Score=66.89 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=54.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 14 SVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 14 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
+.+|+.+|.+++|+|+.+|+..+++.. + .+.+++++++ +.+|.+++|.|+++||+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-g--~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-G--LPRSVLAQIW----DLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-C--CCHHHHHHHH----HHhcCCCCCcCCHHHHHHHHHHH
Confidence 578999999999999999999999887 6 3777888887 99999999999999999887643
No 15
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.34 E-value=6.4e-12 Score=63.70 Aligned_cols=52 Identities=21% Similarity=0.502 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 24 CNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.+|+|+.++|+.++..+ |.. ++++++..++ ..+|.+++|.|+++||+.++.+
T Consensus 1 ~~G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL-GIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHT-TSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh-CCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999777 888 9999998888 9999999999999999998864
No 16
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.33 E-value=1.5e-11 Score=62.57 Aligned_cols=61 Identities=21% Similarity=0.556 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
+..+|+.+|.+++|.|+..++..+++.+ +...+.+.+..++ ..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~~~----~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-GEGLSEEEIDEMI----REVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHH----HHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999998 8888888888877 99999999999999998865
No 17
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.1e-11 Score=74.98 Aligned_cols=68 Identities=22% Similarity=0.438 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
..+.++.+|+++|-|++|+||..+|+.+.+.+ |.+++++++..+| .++|.+++|-|+-+||..++.+.
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-genltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-GENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHh-CccccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 56789999999999999999999999999999 9999999999999 99999999999999999998764
No 18
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.32 E-value=2.1e-11 Score=71.04 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+....++..+|..+|.|++|+|+.+||..+. + + ..+..+..++ ..+|.|+||.||++||+.++.+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l-~--~~e~~~~~f~----~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--L-D--PNEHCIKPFF----ESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c-c--chHHHHHHHH----HHHCCCCCCCCCHHHHHHHHhC
Confidence 5567789999999999999999999999765 2 2 2344444455 9999999999999999999843
No 19
>PF14658 EF-hand_9: EF-hand domain
Probab=99.32 E-value=1.1e-11 Score=65.14 Aligned_cols=61 Identities=13% Similarity=0.384 Sum_probs=56.5
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHhc
Q 034521 15 VIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRD-SYLTLGDFIKVFGN 80 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~-g~I~~~ef~~~l~~ 80 (92)
.+|..||.++.|.|....+...|+++ +. .+++.+++.+. +++|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~-~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV-TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH-cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999999999999999999 76 88889999999 99999988 99999999999864
No 20
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.32 E-value=3e-11 Score=67.37 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHHHH-hcCCCCC-cccHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 6 YHLLLLFLSVIFKV-YDSDCNG-KVSFNDILEVLRDLS----GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 6 ~~~~~~~l~~~F~~-~D~~~~G-~I~~~el~~~l~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
.+.-...+..+|+. +|.+++| +|+.+||+.++...+ +...++.++++++ +.+|.|+||.|+|+||++++.
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHH
Confidence 34456778999999 6788876 999999999997652 2345567777877 999999999999999999886
Q ss_pred c
Q 034521 80 N 80 (92)
Q Consensus 80 ~ 80 (92)
.
T Consensus 80 ~ 80 (89)
T cd05023 80 G 80 (89)
T ss_pred H
Confidence 5
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=75.09 Aligned_cols=66 Identities=20% Similarity=0.398 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..+.++++|+++|++++|+|++.+|..+++.+ |..+|..++.+++ ...|. +.+.|+|.+|+.+|..
T Consensus 18 qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l-g~~~s~~ei~~l~----~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 18 QIQELKEAFQLFDRDSDGLIDRNELGKILRSL-GFNPSEAEINKLF----EEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred HHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc-CCCCcHHHHHHHH----HhccC-CCCccCHHHHHHHHHH
Confidence 34679999999999999999999999999988 9999999988887 66666 5666666666666544
No 22
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=1.6e-11 Score=76.98 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS------FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~------~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
.+.++++.+|++||.|++|+|+++|+..+++.++.. +.......+..+.+|+.+|.|+||.|+++||.......
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 467899999999999999999999999888765321 12234456667777899999999999999999876553
No 23
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=1.2e-10 Score=70.02 Aligned_cols=67 Identities=21% Similarity=0.472 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
...++.+|+.+|.+++|+|+..|+..++... +..++..++..++ ..+|.+++|.|++++|..++...
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKEL-GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcc
Confidence 3568899999999999999999999999887 8889999988888 99999999999999999998764
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.23 E-value=1.3e-10 Score=68.99 Aligned_cols=65 Identities=26% Similarity=0.484 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
...++.+|+.||.+++|+|+.+++..++... +..++.+++..++ ..+|.+++|.|+++||+.++.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNL-GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHh
Confidence 3567889999999999999999999999888 8888988888887 999999999999999998875
No 25
>PTZ00184 calmodulin; Provisional
Probab=99.23 E-value=1.6e-10 Score=68.64 Aligned_cols=69 Identities=13% Similarity=0.370 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.....++..|..+|.+++|.|+..+|..++..+ +..++.+++..++ +.+|.+++|.|++++|+.++..
T Consensus 7 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMI----NEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHH----HhcCcCCCCcCcHHHHHHHHHH
Confidence 3456778999999999999999999999999887 7777777777777 9999999999999999887753
No 26
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.22 E-value=4.8e-11 Score=71.55 Aligned_cols=73 Identities=26% Similarity=0.369 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
..|+..+|+.||.|+++.|..+++...+..+-...++++++..+++.+..++|.+|||++++.||..++.+..
T Consensus 107 dlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 107 DLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 4577889999999999999999999999888566899999999999999999999999999999999887654
No 27
>PTZ00183 centrin; Provisional
Probab=99.19 E-value=3.3e-10 Score=68.07 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
.....+..+|..+|.+++|+|+..||..+++.+ |..++...+..++ +.+|.+++|.|++++|..++.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~----~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMI----ADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHH----HHhCCCCCCcEeHHHHHHHHH
Confidence 456778999999999999999999999999888 7777777766666 888888888888888877654
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.18 E-value=2.7e-10 Score=63.36 Aligned_cols=70 Identities=10% Similarity=0.234 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 8 LLLLFLSVIFKVYDSD--CNGKVSFNDILEVLRDLSGSFMS----DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~--~~G~I~~~el~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
.-...+-..|..|+.. ++|+|+..||+.++....+..++ +++++.++ +.+|.+++|.|+|++|+.++...
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~----~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIF----EDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 3456677889999866 48999999999999744365566 78888888 99999999999999999988653
No 29
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=2.9e-10 Score=68.88 Aligned_cols=70 Identities=21% Similarity=0.303 Sum_probs=62.6
Q ss_pred HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 6 YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.....++++.+|.+||.+++|+|+.+||+.+++++ |..+..+++.+++ ..+|.++.|.|+|++|...+..
T Consensus 28 ~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmral-GFE~~k~ei~kll----~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 28 TEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRAL-GFEPKKEEILKLL----ADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred cHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHc-CCCcchHHHHHHH----HhhhhccCceechHHHHHHHHH
Confidence 34566889999999999999999999999999999 9999999999999 8999988999999999887654
No 30
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.13 E-value=5.2e-10 Score=66.44 Aligned_cols=45 Identities=27% Similarity=0.372 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+...++++|.+||..++|+|+......+++.+ |.++++.++.+.+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal-G~nPT~aeV~k~l 53 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL-GQNPTNAEVLKVL 53 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHh-cCCCcHHHHHHHH
Confidence 45889999999999999999999999999999 9999999998775
No 31
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.10 E-value=8e-10 Score=69.87 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
....+.+|+.||+|++|.|+..||++++..+ |..++++-.+.++ +++|..++|.|.|++|++++..
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQL-GYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHc-CcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHH
Confidence 4557889999999999999999999999999 9999999888888 9999888999999999987654
No 32
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.09 E-value=2.1e-09 Score=64.91 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH-----------------------------HHHHH
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL-----------------------------TQVFK 59 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~-----------------------------~~~~~ 59 (92)
+-..++++|++.|.|++|.|.+++|+.++.++ |...++++++.++ ..+|+
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl-Gk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~ 108 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL-GKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFK 108 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44668999999999999999999999999999 9889998988884 45778
Q ss_pred HhCCCCCCcccHHHHHHHHhcCCCc
Q 034521 60 DAGYTRDSYLTLGDFIKVFGNSGLK 84 (92)
Q Consensus 60 ~~d~~~~g~I~~~ef~~~l~~~~~~ 84 (92)
.+|.++.|.|.-+.+..++...+-+
T Consensus 109 ~FD~~~~G~I~~d~lre~Ltt~gDr 133 (171)
T KOG0031|consen 109 TFDDEGSGKIDEDYLRELLTTMGDR 133 (171)
T ss_pred hcCccCCCccCHHHHHHHHHHhccc
Confidence 8899999999998888888765543
No 33
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.00 E-value=4.3e-09 Score=63.56 Aligned_cols=67 Identities=18% Similarity=0.356 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.+.|..+|+.||.++.|.|..+.|+.+|... |..+++++|+.++ +.+-++..|.|+|..|+.++..
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTM-GDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHh-cccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHHc
Confidence 36778999999999999999999999999998 9999999999999 9999999999999999999873
No 34
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.91 E-value=2.5e-09 Score=47.77 Aligned_cols=28 Identities=32% Similarity=0.739 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
++.+|+.||+|++|+|+.+||..+++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 6789999999999999999999998764
No 35
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.88 E-value=1.4e-08 Score=63.81 Aligned_cols=66 Identities=20% Similarity=0.394 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
-..+...|+.||.+.||+|+..||+.+|..+ |.+-+.--...++ ++.|-|.+|+|||-+|.-++..
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-gapQTHL~lK~mi----keVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEKL-GAPQTHLGLKNMI----KEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHh-CCchhhHHHHHHH----HHhhcccccchhHHHHHHHHHH
Confidence 3446678999999999999999999999999 8888877777788 9999999999999999877654
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=98.84 E-value=2.2e-08 Score=72.31 Aligned_cols=64 Identities=20% Similarity=0.512 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.++.+|+.+|.+++|.|+.+||..++..+ +...+++++..++ +.+|.+++|.|+++||.+++..
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~~~seEEL~eaF----k~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAF-GNLVAANKKEELF----KAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHh-ccCCCHHHHHHHH----HHhCCCCCCcCCHHHHHHHHHh
Confidence 37899999999999999999999999887 7777888877777 9999999999999999999877
No 37
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.84 E-value=9.5e-09 Score=64.53 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
......+|+.||.|++|.|++.|+..++..+ ...-. ++-+.+.|+.+|.+++|.|+.+|+..++...
T Consensus 63 ~~y~~~vF~~fD~~~dg~i~F~Efi~als~~-~rGt~----eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 63 SKYAELVFRTFDKNKDGTIDFLEFICALSLT-SRGTL----EEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHHHhcccCCCCcCHHHHHHHHHHH-cCCcH----HHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 3446788999999999999999998888877 22222 2334455899999999999999999887653
No 38
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.77 E-value=3.5e-08 Score=55.06 Aligned_cols=68 Identities=10% Similarity=0.189 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
-...+-..|..|- .+.+.++..||+..+..-++ ..-.+..+++++ +..|.|+||.|+|.||..++...
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im----~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIM----KDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 3455667888887 45679999999999864323 233344555555 99999999999999999988653
No 39
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.77 E-value=5.4e-08 Score=57.94 Aligned_cols=62 Identities=21% Similarity=0.355 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
+.+-+..+.||+.++|.|...||+.++..+ |..+++++++.++ .-. .|.+|.|+|+.|++.+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttl-Gekl~eeEVe~Ll----ag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTL-GEKLTEEEVEELL----AGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHH-HhhccHHHHHHHH----ccc-cccCCcCcHHHHHHHH
Confidence 445577899999999999999999999999 9999999999998 443 6778999999999865
No 40
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.76 E-value=1.7e-08 Score=45.59 Aligned_cols=29 Identities=34% Similarity=0.677 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-Hh
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLR-DL 40 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~-~~ 40 (92)
+++.+|+.||.|++|+|+.+||..+++ ++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478999999999999999999999998 55
No 41
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.74 E-value=6.1e-08 Score=67.20 Aligned_cols=68 Identities=21% Similarity=0.411 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDL---SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
-+.-+|+..|+|++|.||.+||+.+++-+ ....++++++.++. +.+|.|+||+|++.||+.++.-...
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHHhhhcc
Confidence 36778999999999999999999987644 34577888888888 9999999999999999988765443
No 42
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.66 E-value=1.1e-07 Score=65.41 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=49.3
Q ss_pred hhHhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 4 TGYHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 4 ~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+|.......++.+|+.||.+++|+|+.+|+.. ++.+ |..+|.|+||.|+++||.+.+..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~----F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAV----FDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHH----HHHhCCCCCCCCcHHHHHHHHHH
Confidence 45566778889999999999999999999842 2334 49999999999999999998754
No 43
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.65 E-value=1.4e-07 Score=64.78 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..++..+|+..|.++||+|+..|+.+.++.+ |.+++++++.+++ ..+|.++++.|+++||...+.-
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhc
Confidence 5568889999999999999999999999999 9999999999988 9999999999999999877643
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.62 E-value=2.4e-07 Score=67.11 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
.+.++++|..+|+|++|++ +..+++.+ | ..+++.+. ..++.+++.+|.+++|.|+++||+.++...+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~-~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETER-SFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHH-HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 4678999999999999997 78888888 8 47776651 1233444999999999999999999887543
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.61 E-value=2.3e-07 Score=63.70 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
.-..+++.+|+.+|.+++|.++..++...+.++ +.+ .+.+....++ +..|.|.+|.++|+||.+.+...+.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l-~~~~~~~~~~~~l~----~~~d~~~dg~vDy~eF~~Y~~~~E~ 82 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKL-DHPKPNYEAAKMLF----SAMDANRDGRVDYSEFKRYLDNKEL 82 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhc-CCCCCchHHHHHHH----HhcccCcCCcccHHHHHHHHHHhHH
Confidence 346789999999999999999999999999888 555 5555555666 9999999999999999998877654
No 46
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.2e-07 Score=53.87 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=53.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcC-----C---C-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 034521 15 VIFKVYDSDCNGKVSFNDILEVLRDLSG-----S---F-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 77 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~~l~~~~~-----~---~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 77 (92)
-.|+++|.|++|.++--|+..++..... . + +++.+...+++.+++.-|.|+||.|+|.||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3599999999999999999988875422 1 2 357799999999999999999999999999874
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=1.1e-07 Score=42.34 Aligned_cols=26 Identities=12% Similarity=0.356 Sum_probs=22.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 55 TQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 55 ~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+++|+.+|.|++|.|+++||+.++.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 34459999999999999999998864
No 48
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.56 E-value=7.3e-07 Score=51.04 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
..+....|+..|. .+|+|+-.+...++... .++.+.+.++| ...|.+++|+++++||+-+|.
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHH
Confidence 5678889998885 68999999999988765 68888999999 999999999999999987654
No 49
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.49 E-value=2.3e-07 Score=39.94 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHH
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVL 37 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l 37 (92)
|+.+|+.+|.|++|.|+.+|+.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998753
No 50
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.46 E-value=1.7e-06 Score=54.95 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHH--------------------------HHHHHHHhC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQV--------------------------LTQVFKDAG 62 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~d 62 (92)
....+...|...|+|+.|+|+.+||.+++......+.+.+.++-+ |..+|+.+|
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D 134 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYD 134 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 355667778888888888888888888766332333444443333 355667777
Q ss_pred CCCCCcccHHHHHHHHhcCCCce
Q 034521 63 YTRDSYLTLGDFIKVFGNSGLKM 85 (92)
Q Consensus 63 ~~~~g~I~~~ef~~~l~~~~~~~ 85 (92)
.|+.|.|+..|+.+.+...+..+
T Consensus 135 ~D~SG~I~~sEL~~Al~~~Gy~L 157 (221)
T KOG0037|consen 135 RDRSGTIDSSELRQALTQLGYRL 157 (221)
T ss_pred cCCCCcccHHHHHHHHHHcCcCC
Confidence 77777777777777776666544
No 51
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.26 E-value=4.6e-06 Score=64.80 Aligned_cols=71 Identities=25% Similarity=0.437 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS-------DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
+..+..+.-+|+.||.+.+|.++..+|+.+++.+ |+.+| +.++..++ ...||+.+|+|+..+|..+|.
T Consensus 2249 Ee~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl-gY~lpmvEe~~~~p~fe~~l----d~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2249 EEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSL-GYDLPMVEEGEPEPEFEEIL----DLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhc-CCCCcccccCCCChhHHHHH----HhcCCCCcCcccHHHHHHHHH
Confidence 4456677888999999999999999999999999 88663 22455555 999999999999999999987
Q ss_pred cCC
Q 034521 80 NSG 82 (92)
Q Consensus 80 ~~~ 82 (92)
+.+
T Consensus 2324 ~~E 2326 (2399)
T KOG0040|consen 2324 SKE 2326 (2399)
T ss_pred hcc
Confidence 654
No 52
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.25 E-value=3e-06 Score=55.20 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=52.4
Q ss_pred HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHH---HHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 6 YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQV---LTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
.....+++..+|...|.|.+|+|+..|+++++..- +.+..++. -...|+..|+++||+|+++||.--+
T Consensus 96 prrsrrklmviFsKvDVNtDrkisAkEmqrwImek-----taEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 96 PRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEK-----TAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred hhHHHHHHHHHHhhcccCccccccHHHHHHHHHHH-----HHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 34568899999999999999999999999987643 22222222 2346688999999999999997544
No 53
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.17 E-value=1.2e-05 Score=40.17 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=38.4
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 27 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 27 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
++++.|++..++.+ +..+.+..+..++ +.+|.+++|.+..+||...+.
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~LF----q~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQLF----QECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHHHH----HHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHHHH----HHhcccCCCCccHHHHHHHHH
Confidence 46899999999999 8899998888888 999999999999999988765
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.17 E-value=3.7e-06 Score=36.07 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=20.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHH
Q 034521 55 TQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 55 ~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
..+|+.+|.|+||.|+.+||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 345699999999999999998864
No 55
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.14 E-value=1.1e-06 Score=51.01 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 77 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 77 (92)
.-...+...|..+|.|+||.++..|+..+...+ ..++ .-+..+++..|.|+||.||..||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e----~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPE----HCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTG----GGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhH----HHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 345667888999999999999999998764433 1222 23455669999999999999999763
No 56
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.10 E-value=2e-05 Score=55.90 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
++.+++.|...| +++|+|+..++..++... +... ...+.+.++.++...+++.+|.|+|++|+.++..
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~-~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKA-KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHh-cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 566889999999 999999999999999887 5433 2233344444449999999999999999987643
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=2e-05 Score=52.80 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 6 YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
+..+..+=++.|+..|.|++|.++.+||...+.=- . -+....-++..-+...|.|+||+|+++||+.=+-
T Consensus 158 ~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE---e-~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 158 YKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE---E-HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLY 227 (325)
T ss_pred HHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh---h-cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHh
Confidence 55667777889999999999999999998765311 1 1112223344455899999999999999996553
No 58
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.01 E-value=4.6e-05 Score=47.85 Aligned_cols=63 Identities=19% Similarity=0.381 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCCc-ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 14 SVIFKVYDSDCNGK-VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 14 ~~~F~~~D~~~~G~-I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..+++.|+.+++|. |++++|.+.+... ...-+.. .-++=+|+.+|.+++|.|+.+|+.+++..
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f-~~~~~~~---~Kl~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVF-SPKASKR---EKLRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhh-cCCccHH---HHHHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 34455555555555 6666665555544 2222222 22333559999999999999999888754
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.99 E-value=1.2e-05 Score=36.05 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 55 TQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 55 ~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
..+|+.+|.+++|.|+.+||.+++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3566999999999999999999987
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=1.4e-05 Score=53.53 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
....+++..+|...|.+++|.|+..|++.++... .......++.+-| ..+|.+.||.|+++++...+-
T Consensus 73 ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s-~k~~v~~~~~~~~----~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSDGFVTESELKAWIMQS-QKKYVVEEAARRW----DEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred chhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHH-HHHHHHHHHHHHH----HHhccCccceeeHHHhhhhhh
Confidence 3467889999999999999999999999998876 2233333444445 899999999999999987654
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.75 E-value=6.3e-05 Score=31.74 Aligned_cols=27 Identities=30% Similarity=0.759 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHH
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRD 39 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~ 39 (92)
++.+|+.+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 578999999999999999999988764
No 62
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.66 E-value=6.6e-05 Score=37.54 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHH
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRD 39 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~ 39 (92)
.....+..+|..+|.+++|+|+.+||..++..
T Consensus 22 ~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 44567899999999999999999999988764
No 63
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.47 E-value=0.0003 Score=36.39 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVL 37 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l 37 (92)
.....+..+|+.+|.|++|+|+.+||..++
T Consensus 37 ~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 37 ESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 345677888999999999999999998764
No 64
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.39 E-value=0.0011 Score=46.69 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCC-------------------------------HHHHH----------
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS-------------------------------DEQRE---------- 51 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~-------------------------------~~~~~---------- 51 (92)
+...|+.+|.++.|+|+......++..+.|.++| .+++.
T Consensus 466 L~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~ 545 (631)
T KOG0377|consen 466 LEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRN 545 (631)
T ss_pred HHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhc
Confidence 5678999999999999999998888766554332 01110
Q ss_pred -HHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 52 -QVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 52 -~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
.-++.+|+..|.|+.|.||.+||..++.-.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~ 576 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLL 576 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHH
Confidence 003568899999999999999999877543
No 65
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=97.30 E-value=0.00095 Score=45.05 Aligned_cols=70 Identities=17% Similarity=0.313 Sum_probs=53.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHH----HhcCCCCC-------HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 14 SVIFKVYDSDCNGKVSFNDILEVLR----DLSGSFMS-------DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 14 ~~~F~~~D~~~~G~I~~~el~~~l~----~~~~~~~~-------~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
+-+|.++|.|++|.++..|+...+. .++...-. +++.-++-+++|+..|.|.|..|+.+||++.-.+.+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ke 326 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKE 326 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhcc
Confidence 3468899999999999999988764 33232222 334456678899999999999999999998765544
Q ss_pred C
Q 034521 83 L 83 (92)
Q Consensus 83 ~ 83 (92)
+
T Consensus 327 f 327 (442)
T KOG3866|consen 327 F 327 (442)
T ss_pred c
Confidence 3
No 66
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=97.18 E-value=0.00082 Score=53.01 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=51.9
Q ss_pred HHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 17 FKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 17 F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
|+.||+|+.|-|+..+|..++... .+.++.+++-++ +.+..+.+..++|++|+.-+..-
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~--k~ytqse~dfll----scae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHH----HhhccCccccccHHHHHHHhcCc
Confidence 889999999999999999998764 467888988888 99999999999999999877553
No 67
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.18 E-value=0.00071 Score=28.25 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 56 QVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 56 ~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.+|+.+|.+++|.|++.+|..++..
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3459999999999999999998764
No 68
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.00046 Score=51.27 Aligned_cols=66 Identities=17% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
...|.+.+|+.+|+...|+++-..-+.++... .+++..+-.+| ...|.|+||.++.+||+-.|.-+
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS---~Lpq~~LA~IW----~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQS---GLPQNQLAHIW----TLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhc---CCchhhHhhhe----eeeccCCCCcccHHHHHHHHHHH
Confidence 35788999999999999999999888887654 67777777788 99999999999999998665433
No 69
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.03 E-value=0.0069 Score=32.82 Aligned_cols=68 Identities=22% Similarity=0.362 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
++.+|..|-. +.+.++.++|...+...=+. ..+.+++..++...-........+.++++.|...|...
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 6788999954 89999999999999866232 46888999999444333322346899999999998654
No 70
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.89 E-value=0.0022 Score=43.80 Aligned_cols=68 Identities=13% Similarity=0.230 Sum_probs=55.1
Q ss_pred HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 6 YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
.+.....+..+|+.+|.|.+|.++..||..+... ..+.-+..+|...|...||.||-.||+..+.+..
T Consensus 245 ~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 245 LPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD---------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred CcchhhhhhhhhhccccccccccCHHHhhhhhcc---------CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 3456778999999999999999999999876431 1234566677999999999999999999887754
No 71
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.88 E-value=0.004 Score=42.33 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCH
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD 47 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~ 47 (92)
+++..|.+||.+++|.++..|....+..+++...+.
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~ 295 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTP 295 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcH
Confidence 344445555555555555544444444443433333
No 72
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.69 E-value=0.0059 Score=44.25 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..+.+..|..+|.|+.|+++..++..+++.. +..++++..++.+ .+.|.+-+|.++..||.+++..
T Consensus 592 ~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~-~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 592 FLRRKTRFAFLDADKKAYQAIADVLKVLKSE-NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 3456678999999999999999999999998 7889998888888 9999998999999999988754
No 73
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.64 E-value=0.0048 Score=34.28 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..+..+++.+|.|++|.|+++||..++..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568899999999999999999999888765
No 74
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.01 Score=42.54 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
+...+..-.-|+..-.|-+|.|+-.--++++.+. .++..|+..+| ...|.+.||.+++.|||..+.
T Consensus 227 ~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS---klpi~ELshIW----eLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEELSHIW----ELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHHhhhhcccCCcccccccHHHHhhhhhc---cCchHHHHHHH----hhcccCccccccHHHHHhhHh
Confidence 3445556677888889999999998888887754 67888988999 999999999999999998764
No 75
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.56 E-value=0.0041 Score=42.29 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
..+..-|+.+|++|+.+.||.+..++|..+++..+|. ..-.+..++ +..+...+|+|++++|.+.....
T Consensus 292 ~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v~~lf----~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 292 PVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRVPVLF----PSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred CCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeeccccc----hhhhcccCcceeHHHHHHHHHhC
Confidence 4456778999999999999999999999888766443 333334455 88888889999999999887654
No 76
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.53 E-value=0.00099 Score=45.18 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.++..|..+|+|+++.|.+.|++.+=+.+. ......+-...+++..|.|+|..||++||...+..
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~----k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLL----KKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHH----hhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3567789999999999999999765433321 12244455566669999999999999999998864
No 77
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.47 E-value=0.0077 Score=33.55 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+..+++.+|.|++|.|+.+||..++..+
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3468889999999999999999999988766
No 78
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0015 Score=45.71 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=32.8
Q ss_pred CcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 26 GKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 26 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
+.|+..+++++.....|..+++. +++-+|..+|.|+||.+|.+||+.+|.+.
T Consensus 403 ~~i~~~~f~raa~~vtGveLSdh----VvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTGVELSDH----VVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred CCCCHHHHHHHHHHhcCcccccc----eeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 33444444444333333344432 23445688999999999999999998764
No 79
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.32 E-value=0.025 Score=42.89 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD-EQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
.....++..|+.++....|..+.+++..++..+ |....+ ++...-|..++...|+++-|.+++.+|...|.+.
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl-g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSL-GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc-CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 467889999999999999999999999999998 887765 4555556677788899988999999999888764
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.29 E-value=0.015 Score=29.05 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..+..+|+..|+.++|++..+|+...++.+
T Consensus 21 ~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 21 EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 446789999999999999999999988764
No 81
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.21 E-value=0.011 Score=32.72 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..+..+++.+|.|++|.|+.+||..++..+
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 457888999999999999999999888765
No 82
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.17 E-value=0.014 Score=32.20 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+..+|+.+|.+++|.|++++|..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999999999999887655
No 83
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.16 E-value=0.0093 Score=32.99 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+.+..+|+.+|.|++|+|+++||..++..+
T Consensus 48 ~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 48 LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 345678889999999999999999998887655
No 84
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.09 Score=37.19 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 77 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 77 (92)
.+-++--|..+|+..+|.|+..+|..++-...+ .+.+..+..+.++-++++.+ +-.||++||.+.
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~--~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~F 381 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAG--VNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAF 381 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcc--cchHhHHHHHHHHHHhccCC-CCCcCHHHHHHH
Confidence 344556699999999999999999999877633 33344455666677888776 445999997654
No 85
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.13 E-value=0.011 Score=34.41 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVL 37 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l 37 (92)
..+..+|+.+|.|++|+||.+|+...+
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 456789999999999999999999988
No 86
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.12 E-value=0.02 Score=31.86 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 45 MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 45 ~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
++.+++. -+..+|..+|.+++|.|+.+++..++...+.
T Consensus 4 ls~~~~~-~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~ 41 (96)
T smart00027 4 ISPEDKA-KYEQIFRSLDKNQDGTVTGAQAKPILLKSGL 41 (96)
T ss_pred CCHHHHH-HHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC
Confidence 3444333 3446679999999999999999999876543
No 87
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.09 E-value=0.013 Score=35.66 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+++.++|. .|+.|.+++++|..+++.++...+-+-.+.-.+ +.+|-|+|+.|.-++..+.+.+
T Consensus 74 ~ri~e~FS---eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAF----kIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 74 RRICEVFS---EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAF----KIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred HHHHHHhc---cCCCCcccHHHHHHHHHHHHhhChHHhhhhhee----EEeecCCCCcccHHHHHHHHHH
Confidence 44445554 699999999999999987722222222333344 8999999999999998877654
No 88
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.07 E-value=0.014 Score=32.44 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
....+..+|+.+|.+++|.|+..+|..++...
T Consensus 49 s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 49 DPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34668899999999999999999999888765
No 89
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.95 E-value=0.021 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+..+|+.+|.+++|.|+..+|..++..+
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999999999999999999888765
No 90
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.95 E-value=0.019 Score=32.08 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..+..+++..|.|+||.|++.||...+..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 347888999999999999999999887665
No 91
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.92 E-value=0.027 Score=37.16 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
.++.+++=...|.|++|.++.+|+...+--. +......++..++ ...|.+++.+++.++...
T Consensus 280 kdRkkEFeElIDsNhDGivTaeELe~y~dP~-n~~~alne~~~~m----a~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 280 KDRKKEFEELIDSNHDGIVTAEELEDYVDPQ-NFRLALNEVNDIM----ALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHHHhhcCCccceeHHHHHhhcCch-hhhhhHHHHHHHH----hhhccCCCcccCHHHHHH
Confidence 3456666678899999999999999875433 3444555666666 889999999999999764
No 92
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.91 E-value=0.025 Score=28.84 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...++.+|+.+|.+++|.|+..++..++..+
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4567889999999999999999998887654
No 93
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.89 E-value=0.026 Score=39.93 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+-..|-.+|+|++|.|+.++|...- ...++.--++++++++-+..-.-.+|.++|++|+-.+..
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~----d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYG----DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHh----ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 3344777899999999999987653 334565566666654444555667888888888766543
No 94
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.87 E-value=0.12 Score=28.85 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLS------GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~------~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
+.+|++.+|+.+ .|++|.++..-|...++.+. |...+=.-++..++.-|... .....|+.+.|+..+...
T Consensus 1 L~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 1 LEDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred ChHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 478999999999 79999999999887766441 22111111334444444665 245579999999988653
No 95
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.80 E-value=0.0091 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVL 37 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l 37 (92)
....++.+|..+|.+++|.|+.+++..++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 34 SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 34567789999999999999999998754
No 96
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.75 E-value=0.041 Score=40.98 Aligned_cols=72 Identities=21% Similarity=0.393 Sum_probs=60.1
Q ss_pred HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 6 YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
......++...|+..|++.+|.++..+...+++.+ ...+....+..++ ++.+..+++.+..++|++......
T Consensus 131 ~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~-n~~l~~~~~~~~f----~e~~~~~~~k~~~~~~~~~~~~~~ 202 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQL-NVQLSESKARRLF----KESDNSQTGKLEEEEFVKFRKELT 202 (746)
T ss_pred cchHHHHHHHHHHHHccccccccchhhHHHHHHHH-HHhhhHHHHHHHH----HHHHhhccceehHHHHHHHHHhhc
Confidence 34457789999999999999999999999999988 7788887777777 777888889999999887765443
No 97
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.69 E-value=0.015 Score=32.17 Aligned_cols=31 Identities=16% Similarity=0.395 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+..+++.+|.|++|+|++++|..++..+
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4558899999999999999999999887654
No 98
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=95.58 E-value=0.054 Score=39.01 Aligned_cols=70 Identities=20% Similarity=0.442 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC-----------------------CCCHHHHHHH--------HHHHHH
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS-----------------------FMSDEQREQV--------LTQVFK 59 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-----------------------~~~~~~~~~~--------~~~~~~ 59 (92)
.....+|+.||+.++|.+|.+++..++.++ .. .+.-.+..++ -.+.|+
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t-~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQT-NLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhcc-ccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999998765 31 1112222222 255778
Q ss_pred HhCCCCCCcccHHHHHHHHhcC
Q 034521 60 DAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 60 ~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
+.|..++|.|+-=+|..++...
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HhcccCCCeeeeechHhhhhhh
Confidence 8899999999988888777543
No 99
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.39 E-value=0.24 Score=36.30 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHH
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE 48 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~ 48 (92)
+.....+.++|++.|.|++|.++-.|+...-+...+.++...
T Consensus 191 p~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~ 232 (625)
T KOG1707|consen 191 PRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQ 232 (625)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHH
Confidence 445677899999999999999999998765544445444433
No 100
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.26 E-value=0.053 Score=29.51 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+..+++.+|.+++|.|+.++|..++...
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678889999999999999999999887654
No 101
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.00 E-value=0.046 Score=38.79 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSG----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
-+..-|+..|.+++|.++..|++-..+..+. ....+--++.++.+++....+...++|+.++|..
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 3677899999999999999999876653311 1111123356666666888888899999999976
No 102
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.87 E-value=0.26 Score=30.72 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCC-----------------------------------------CHH--
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFM-----------------------------------------SDE-- 48 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~-----------------------------------------~~~-- 48 (92)
.|+.-...||.|+||.|...|--+-++++ |.++ ++.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraL-Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRAL-GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHh-CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 35556677899999999999976666666 5210 000
Q ss_pred ------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 49 ------QREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 49 ------~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
-+.+-++.+|+.++..+.+.+++.|..+++..
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 11222456669999888889999999988865
No 103
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.55 E-value=0.093 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...|..++.+.|.+++|+++.+||.-++.-+
T Consensus 42 ~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 42 RDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4678899999999999999999998877644
No 104
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=94.26 E-value=0.09 Score=36.72 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
...+|+.+|.|++|+|+.+||...++..
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4788999999999999999999988755
No 105
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.21 E-value=0.6 Score=28.43 Aligned_cols=62 Identities=6% Similarity=0.204 Sum_probs=43.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 15 VIFKVYDSDCNGKVSFNDILEVLRDL--SGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~~l~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..|..|-..+...++...|..+++.. .+..++...++-++ ..+-..+...|+|++|+.+|..
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF----~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIF----SKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHH----HHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHH----HHhhcCCCcccCHHHHHHHHHH
Confidence 44444456677789999999999866 12367777777777 7776666677999999988865
No 106
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=93.95 E-value=0.22 Score=36.07 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=40.0
Q ss_pred HhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 19 VYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 19 ~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
.-|..+||-|+++||+..=.-+| -++ .+...+|.-+|..++|.+|++++..++..+++
T Consensus 82 iaD~tKDglisf~eF~afe~~lC---~pD----al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAFESVLC---APD----ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred hhhhcccccccHHHHHHHHhhcc---Cch----HHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 44667788899888875432221 122 33444558889999999999999988877655
No 107
>PF14658 EF-hand_9: EF-hand domain
Probab=93.56 E-value=0.22 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCCCC-CcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCN-GKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~-G~I~~~el~~~l~~~ 40 (92)
...|+.+.+.+|+++. |.|+++.|..+|+..
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 5578999999999998 999999999998753
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=0.64 Score=35.48 Aligned_cols=59 Identities=7% Similarity=0.031 Sum_probs=46.0
Q ss_pred HHHHhc--CCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 16 IFKVYD--SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 16 ~F~~~D--~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
.|..|+ +.+.|+|+-..-+.++-+. .++..-+.++| ...|.|+||.++..||--.|+-.
T Consensus 18 ~~~qF~~Lkp~~gfitg~qArnfflqS---~LP~~VLaqIW----ALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 18 HDAQFGQLKPGQGFITGDQARNFFLQS---GLPTPVLAQIW----ALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred HHHHHhccCCCCCccchHhhhhhHHhc---CCChHHHHHHH----HhhhcCccccchHHHHHHHHHHH
Confidence 344443 5789999999999887655 56766777777 99999999999999997666543
No 109
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=91.48 E-value=0.76 Score=29.60 Aligned_cols=73 Identities=21% Similarity=0.323 Sum_probs=50.4
Q ss_pred CchhhHhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhCCCCCCcccHHHHH
Q 034521 1 MTKTGYHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE-QREQVLTQVFKDAGYTRDSYLTLGDFI 75 (92)
Q Consensus 1 ~~~~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~ef~ 75 (92)
|++-|.+-+...++.+-+..|-|.+|+||+.++.-+++......+..+ ....+. -.++.|....|.---..|-
T Consensus 125 mEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~~LA--r~~eVDVskeGV~GAknFF 198 (244)
T KOG0041|consen 125 MEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLLRLA--RLSEVDVSKEGVSGAKNFF 198 (244)
T ss_pred HHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHHHHH--HhcccchhhhhhhhHHHHH
Confidence 466777777888999999999999999999999988876644444433 223332 1133677776655555554
No 110
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.64 E-value=0.47 Score=34.89 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFM-SDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
+...+.+...|..||.|+||.++..|+..+++.. +..+ +..-... ..-.+..|.++++-|...+
T Consensus 311 ~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~-P~~pW~~~~~~~-------~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 311 PKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA-PGSPWTSSPYKD-------STVKNERGWLTLNGFLSQW 375 (625)
T ss_pred HHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC-CCCCCCCCcccc-------cceecccceeehhhHHHHH
Confidence 3446788999999999999999999999999877 4432 1110000 1112246778888776544
No 111
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.37 E-value=0.73 Score=34.21 Aligned_cols=59 Identities=24% Similarity=0.390 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDF 74 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef 74 (92)
...+..+|+.+|.+.+|.+++.++...+..++. .++.+-+.-+++.+|++++ ..+.++-
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~-----~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA-----GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh-----hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 445778999999999999999999998887732 2333445556688888887 6665553
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=90.01 E-value=2.7 Score=26.32 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-HhCCCCCCcccHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFK-DAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~g~I~~~ef~~~l~ 79 (92)
.+++.++|..|++.+.+.++..|+.++++.-....-+-..+...+++... .+-.+.+|.++-++-..++-
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcc
Confidence 57899999999999999999999999987531111111111111111111 12245678998888776653
No 113
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=88.19 E-value=0.72 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHH
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILE 35 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~ 35 (92)
.-++.+|+..|.|++|.||..|...
T Consensus 88 ~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 88 HCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3467889999999999999998764
No 114
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=88.18 E-value=0.8 Score=24.27 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVL 37 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l 37 (92)
.+.+..+|+.. .++.++|+..||++.+
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 46788999999 8899999999999764
No 115
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=87.93 E-value=0.96 Score=26.02 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=41.4
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 18 KVYDSDCNGKVSFNDILEVLRDLSG-----SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 18 ~~~D~~~~G~I~~~el~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
++||...+-+|+.+++..+++.-.. ..-.++-...++-++..+....+...++.+=..+++.-.|-
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 4789999999999999998874311 11122222334444447777777767777666666655443
No 116
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.82 E-value=0.58 Score=27.35 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 44 FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
.+++++++.+| .++-.|..|.+.|.||+.-+.
T Consensus 3 iLtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHH----TTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhh----hhCcCCccCCEeHHHHHHHcc
Confidence 36888999999 999999999999999987654
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.43 E-value=0.26 Score=37.69 Aligned_cols=64 Identities=20% Similarity=0.147 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
-..++..+|...|.+++|+|+..+....+.. ..++...+...| ...|..+.|.+++.+|+-.+.
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc---CCCChhhhhhhh----hhcchhccCcccccccchhhh
Confidence 3456667899999999999999999887765 356666777777 999999999999999876553
No 118
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.61 E-value=0.51 Score=32.95 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDE-QREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
.++...+++.|+.+|+.++|+|+..-++.++..+ +...++. .+.-+- ...|+.+-|-|-.++|..
T Consensus 305 ~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~-N~~vse~a~v~l~~----~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL-NRLVSEPAYVMLMR----QPLDPESLGIILLEDFLG 370 (449)
T ss_pred CCCCHHHHhhhhccCccCCCeeecHHHHHHHHHh-cccccCHHHHHHhc----CccChhhcceEEeccccc
Confidence 3457789999999999999999999999999888 6445543 333333 455666666555555543
No 119
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.52 E-value=4.9 Score=23.75 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCC--CCcccHHHHHHHHHHhc-------CCCC--C----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 034521 13 LSVIFKVYDSDC--NGKVSFNDILEVLRDLS-------GSFM--S----DEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 77 (92)
Q Consensus 13 l~~~F~~~D~~~--~G~I~~~el~~~l~~~~-------~~~~--~----~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 77 (92)
+.++|+.+..+. +..++..++..++..++ +... + +.-++-.+.+++..+|++++|.|+.-.|...
T Consensus 43 v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kva 122 (127)
T PF09068_consen 43 VIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVA 122 (127)
T ss_dssp HHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHH
T ss_pred HHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHH
Confidence 456677665443 46799999998887765 1111 1 2455666788899999999999999888765
Q ss_pred H
Q 034521 78 F 78 (92)
Q Consensus 78 l 78 (92)
+
T Consensus 123 L 123 (127)
T PF09068_consen 123 L 123 (127)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.65 E-value=2.4 Score=30.07 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=37.0
Q ss_pred CCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 034521 23 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 75 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~ 75 (92)
.-+|+|+-..-+..|- +..++..-+.++| +.+|.+.||.++-+||.
T Consensus 455 p~~gk~sg~~ak~~mv---~sklpnsvlgkiw----klad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 455 PVNGKLSGRNAKKEMV---KSKLPNSVLGKIW----KLADIDKDGMLDDEEFA 500 (532)
T ss_pred ccCceeccchhHHHHH---hccCchhHHHhhh----hhhcCCcccCcCHHHHH
Confidence 4578888766655543 4477888888999 99999999999999996
No 121
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.50 E-value=2.7 Score=23.36 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=33.1
Q ss_pred CCCCcccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 23 DCNGKVSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..||.++..|...+-..+.. ..++..+...++ ..+........++.+|.+.+..
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 11 RADGEYDEEERAAIDRLLAERFGLDAEEAAELL----AEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHH----HHHHHHHHhCCCHHHHHHHHHH
Confidence 35799998887665443311 256777777777 4443333445677777776643
No 122
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.72 E-value=2.3 Score=25.16 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..-+..+.+.||++++|+|+.-+++.++..+
T Consensus 96 ~L~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 96 DLLLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 3446778899999999999999999887654
No 123
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=82.29 E-value=5.8 Score=21.19 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHhc
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT--RDSYLTLGDFIKVFGN 80 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~I~~~ef~~~l~~ 80 (92)
..+..++...|+++ |..-+.|....+... -.+.++.+.+.|++.+....+.. .+..|+.+.+..+++.
T Consensus 3 ~~lrk~I~~~FkL~-----Gl~Lr~eA~~~l~~~-l~~~~~~e~e~~l~~Ii~~v~kq~Lss~~v~~~~ie~Av~e 72 (73)
T PF12213_consen 3 AKLRKKIVKAFKLR-----GLSLRSEASKYLAEQ-LQSLSEEEREDWLDKIIDAVQKQPLSSSIVDKEHIESAVKE 72 (73)
T ss_dssp HHHHHHHHHHHHHT-----T-EE-HHHHHHHHHH-TTTS-TTTHHHHHHHHHHHHTTS--SSSEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc-----cceecHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHc
Confidence 34677889999985 887777777766555 34666677788888877888765 3556888877776653
No 124
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=81.37 E-value=7.6 Score=22.93 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+.+..|+..+|++|.. +.|+.+.+..++...-|..++..+++-+.
T Consensus 33 ~tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~ 77 (122)
T PF06648_consen 33 ETFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLY 77 (122)
T ss_pred chHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHH
Confidence 4578899999999986 88999999888876644678877776554
No 125
>PLN02230 phosphoinositide phospholipase C 4
Probab=80.48 E-value=22 Score=26.65 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHhcC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS---FMSDEQREQVLTQVFKDAGY---TRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~d~---~~~g~I~~~ef~~~l~~~ 81 (92)
...++.+|..|-.++ +.++.++|...+... .. ..+.+++..++..+...... -+.+.++++.|..++...
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 457889999995333 899999999999876 42 34667778888665554432 234569999999988654
No 126
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=80.20 E-value=7 Score=32.58 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHH
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGD 73 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~e 73 (92)
.+.......|++.+|+|+..+....|-..-..+ .+..++...+ +.++. +..+|+-++
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~Af----raL~a-~~~yvtke~ 2354 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAF----RALDA-GKPYVTKEE 2354 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHH----HHhhc-CCccccHHH
Confidence 678888999999999999999887764331222 2333444444 66665 334454444
No 127
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=79.88 E-value=3.2 Score=16.73 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=12.4
Q ss_pred cCCCCCcccHHHHHHH
Q 034521 21 DSDCNGKVSFNDILEV 36 (92)
Q Consensus 21 D~~~~G~I~~~el~~~ 36 (92)
|.|++|+|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6789999999887644
No 128
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=79.61 E-value=7.1 Score=20.54 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
.+++++.+|++ +..++..++... +..++..++..++ +.-+..+--..+-+.+.+.+
T Consensus 4 ILrkLRyal~l---------~d~~m~~if~l~-~~~vs~~el~a~l----rke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 4 ILRKLRYALDL---------KDDDMIEIFALA-GFEVSKAELSAWL----RKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred HHHHHHHHHcC---------ChHHHHHHHHHc-CCccCHHHHHHHH----CCCCCccccccChHHHHHHH
Confidence 35677787774 456788888877 8999999999988 77655543334444444433
No 129
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=77.89 E-value=9.9 Score=26.11 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=30.1
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
.|.+|++|-...++.. ....+++.++.++ +.++ |+-+||.+++
T Consensus 300 ~G~itReeal~~v~~~-d~~~~~~~~~~~~----~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEY-DGEFPKEDLEYFL----KYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHh-cccccHHHHHHHH----HHhC------CCHHHHHHHh
Confidence 6888888888877775 5555555656655 7775 6777777654
No 130
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=76.88 E-value=1.6 Score=28.15 Aligned_cols=56 Identities=21% Similarity=0.482 Sum_probs=36.3
Q ss_pred HHHhcC-CCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 17 FKVYDS-DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 17 F~~~D~-~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
|..+|. ..+|++|-.||..+- ..-++ .+.-+..+|.-.|.|+||.|+++||-..+.
T Consensus 193 f~qld~~p~d~~~sh~el~pl~----ap~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR----APLIP---MEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCcccccccccccccc----CCccc---HHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 334442 457888887775431 11112 123455667999999999999999987663
No 131
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.01 E-value=10 Score=28.49 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS---FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
...+++-.|.++|. .+|.++.+++..++...... .............++.+.|.++.|.+...++.-++..
T Consensus 16 ~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 16 YDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 36789999999998 99999999998877644211 2223444556666779999999888888777665543
No 132
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=73.70 E-value=14 Score=21.01 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
.+..-|..+-. +|+++...|..++ |..-+.+-+.++++-+-+.-... .+.|+-+|+...+.
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHH
Confidence 44555666654 8999999999876 55557777788887777777766 56799988776654
No 133
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=71.77 E-value=22 Score=22.36 Aligned_cols=45 Identities=31% Similarity=0.386 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHh------cCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 9 LLLFLSVIFKVY------DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 9 ~~~~l~~~F~~~------D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+...+..+-+.. ..+.+|+++.+++.+....- +..++.+++.+++
T Consensus 8 lSK~Ls~lLRH~p~~~gL~~d~~G~v~v~dLL~~~~~~-~~~~t~~~i~~vV 58 (186)
T PF01885_consen 8 LSKALSYLLRHGPEKEGLVMDPDGWVSVDDLLRALRFK-GLWVTEEDIREVV 58 (186)
T ss_dssp HHHHHHHHHHT-TGGGT----TT--EEHHHHHHHHHHT--TT--HHHHHHHH
T ss_pred HHHHHHHHhCCChhhcCCccCCCCCEeHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 344455554433 46889999999999988876 6778899998888
No 134
>PLN02952 phosphoinositide phospholipase C
Probab=71.03 E-value=21 Score=26.75 Aligned_cols=53 Identities=6% Similarity=0.013 Sum_probs=37.9
Q ss_pred CCCcccHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 24 CNGKVSFNDILEVLRDLS-GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
+.|.++++++....+.+. ....+..++..++ ..+-.+ .+.++.++|...+...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf----~~~~~~-~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVF----CKFSVG-GGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHH----HHHhCC-CCccCHHHHHHHHHHh
Confidence 468999999988777662 1223567877777 777543 4679999998887553
No 135
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=70.99 E-value=3.4 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.721 Sum_probs=19.7
Q ss_pred HHhcCCCCCcccHHHHHHHHHH
Q 034521 18 KVYDSDCNGKVSFNDILEVLRD 39 (92)
Q Consensus 18 ~~~D~~~~G~I~~~el~~~l~~ 39 (92)
++||...+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999875
No 136
>PLN02223 phosphoinositide phospholipase C
Probab=70.82 E-value=40 Score=24.97 Aligned_cols=72 Identities=6% Similarity=-0.092 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH---HHhcC-CCCCHHHHHHHHHHHHHHhCC----CCCCcccHHHHHHHHhcC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVL---RDLSG-SFMSDEQREQVLTQVFKDAGY----TRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l---~~~~~-~~~~~~~~~~~~~~~~~~~d~----~~~g~I~~~ef~~~l~~~ 81 (92)
-..++.+|..| ..+.|..+.+.+.+.+ ...-+ ...+.++++.+++.++..... .+.+.++.+.|...+...
T Consensus 15 p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 15 PDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred cHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 45678889988 4778999999999888 43312 256788889999877765531 223569999999998765
Q ss_pred C
Q 034521 82 G 82 (92)
Q Consensus 82 ~ 82 (92)
+
T Consensus 94 ~ 94 (537)
T PLN02223 94 E 94 (537)
T ss_pred c
Confidence 4
No 137
>PLN02952 phosphoinositide phospholipase C
Probab=70.47 E-value=43 Score=25.16 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCC---CCCCcccHHHHHHHHhcC
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGY---TRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~---~~~g~I~~~ef~~~l~~~ 81 (92)
..+..+|..|-. +.+.++.++|...+...=+. ..+.+.+..+++.++..... .+.+.++++.|...+...
T Consensus 38 ~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 38 DDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred HHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcCc
Confidence 467788888854 44789999999999876222 35677778887665554332 123458999999988653
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=69.58 E-value=42 Score=25.12 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHhcC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS--FMSDEQREQVLTQVFKDAGY-TRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~--~~~~~~~~~~~~~~~~~~d~-~~~g~I~~~ef~~~l~~~ 81 (92)
...+..+|..|-. ++.++.++|...+... .. ..+.+.+..+++. +.. .+.+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~ii~~----~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDV-QKQDKATREDAQSIINS----ASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHh-cCCccCCHHHHHHHHHh----hhhhhhccCcCHHHHHHHhcCC
Confidence 3568888888853 4799999999999876 43 3466777888843 321 235679999999998653
No 139
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=7.9 Score=22.88 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEV 36 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~ 36 (92)
.+..-+..+.+--|.|++|+|+..|+...
T Consensus 114 Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 114 ELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 44566777788889999999999998653
No 140
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.26 E-value=14 Score=22.01 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=36.3
Q ss_pred CCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 034521 23 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYL 69 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I 69 (92)
+..|.|+.+|-.++|.- ...++.+++.+-.+++|..-|....|.+
T Consensus 51 ~~~~~iTlqEa~qILnV--~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 51 NSNGKITLQEAQQILNV--KEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccccHHHHhhHhCC--CCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 34588999999988753 3478889999999999999999877753
No 141
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=67.22 E-value=29 Score=21.83 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHh------cCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 7 HLLLLFLSVIFKVY------DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 7 ~~~~~~l~~~F~~~------D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
..+...+..+-+.. -.|.+|.++.+++...++.- +..++.+.+.+++
T Consensus 7 ~~lSK~LS~lLRH~p~~~GL~ld~~G~v~v~~Ll~~~~~~-~~~~t~~~l~~vV 59 (179)
T PRK00819 7 EKLSKFLSGVLRHKPEAIGLTLDEEGWVDIDALIEALAKA-YKWVTRELLEAVV 59 (179)
T ss_pred HHHHHHHHHHHCCCHHHcCCccCCCCCEEHHHHHHHHHHc-cCCCCHHHHHHHH
Confidence 34455555554432 34789999999999988765 5678999888888
No 142
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=66.77 E-value=7.3 Score=20.64 Aligned_cols=46 Identities=9% Similarity=0.208 Sum_probs=30.3
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 27 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 27 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.+++.-|..+++. .++......+. ..++.=..+.|+-++|++.+..
T Consensus 8 ~~~F~~L~~~l~~----~l~~~~~~~l~----~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 8 WMPFPMLFSALSK----HLPPSKMDLLQ----KHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred cccHHHHHHHHHH----HCCHHHHHHHH----HHHHHHHHCCCCHHHHHHHHHH
Confidence 4555555555544 35666666665 6665556789999999987754
No 143
>PRK00523 hypothetical protein; Provisional
Probab=66.56 E-value=18 Score=19.33 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=26.2
Q ss_pred CCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 24 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.+=.|+.+-++.++.++ |..+|+..++++.
T Consensus 36 ~NPpine~mir~M~~QM-GqKPSekki~Q~m 65 (72)
T PRK00523 36 ENPPITENMIRAMYMQM-GRKPSESQIKQVM 65 (72)
T ss_pred HCcCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 34568999999999999 9999999998888
No 144
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=66.54 E-value=17 Score=18.99 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+=-|+.+-++.++.++ |..+++..+.++.
T Consensus 29 NPpine~mir~M~~QM-G~kpSekqi~Q~m 57 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQM-GRKPSEKQIKQMM 57 (64)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 4569999999999999 9999999998887
No 145
>PLN02228 Phosphoinositide phospholipase C
Probab=65.95 E-value=54 Score=24.52 Aligned_cols=67 Identities=16% Similarity=0.385 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHhcC
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS-FMSDEQREQVLTQVFKDAGYT----RDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~-~~~~~~~~~~~~~~~~~~d~~----~~g~I~~~ef~~~l~~~ 81 (92)
....+..+|..|-. ++.++.++|...+...=+. ..+.+.+..++ ..+... ..|.++.+.|...+...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhcCc
Confidence 45678888888753 3689999999999876222 23455666666 655432 34679999999988653
No 146
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=64.72 E-value=22 Score=19.56 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 23 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.-||.++..|...+-+.+.....++.+...+. ..+...-. ...++.+|.+.+..
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~l~~ 64 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAI-RLFNEGKE---SDFGLEEYARQFRR 64 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHhCc---CCCCHHHHHHHHHH
Confidence 45788998887665443322233333334443 22233211 12566776665543
No 147
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=62.69 E-value=14 Score=20.21 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 34 LEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
..+++.-.|..++++- .+.+.++++.. ....|+|+|.|.+-
T Consensus 35 ~~WLskeRgG~IP~~V-~~sl~kL~~La---~~N~v~feeLc~YA 75 (82)
T PF11020_consen 35 ATWLSKERGGQIPEKV-MDSLSKLYKLA---KENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHhhCCCCCHHH-HHHHHHHHHHH---HHcCCCHHHHHHHH
Confidence 3456555466777644 44443444444 44469999998653
No 148
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=61.32 E-value=21 Score=18.22 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFK 59 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 59 (92)
+-.+|.+|+...+..+ +..++..++-.+|.++..
T Consensus 7 s~~lTeEEl~~~i~~L-~~~~~~~dm~~IW~~v~~ 40 (61)
T TIGR01639 7 SKKLSKEELNELINSL-DEIPNRNDMLIIWNQVHG 40 (61)
T ss_pred hHHccHHHHHHHHHhh-cCCCCHHHHHHHHHHHHH
Confidence 3467889999999988 888888888888855444
No 149
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=58.97 E-value=6.8 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVL 37 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l 37 (92)
..-+..+|...|.|++|+|+.+|....+
T Consensus 221 e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 221 EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4456788999999999999999877543
No 150
>COG5562 Phage envelope protein [General function prediction only]
Probab=58.34 E-value=13 Score=22.38 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=20.5
Q ss_pred CCCCCCcccHHHHHHHHhcCCC-ceeEe
Q 034521 62 GYTRDSYLTLGDFIKVFGNSGL-KMEVE 88 (92)
Q Consensus 62 d~~~~g~I~~~ef~~~l~~~~~-~~~~~ 88 (92)
..+..|..+|+|||..+.+.|. +=.+.
T Consensus 82 ~~~qsGqttF~ef~~~la~AGVfrwv~d 109 (137)
T COG5562 82 RRHQSGQTTFEEFCSALAEAGVFRWVTD 109 (137)
T ss_pred HHHhcCCccHHHHHHHHHhCCeEEEEEE
Confidence 3445789999999999998887 44433
No 151
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=58.13 E-value=20 Score=18.37 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 27 KVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 27 ~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.|+.++|..+++.. ....+.+++.+..
T Consensus 29 ~it~~DF~~Al~~~-kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKV-KPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTC-GGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence 48899999999988 7788888776554
No 152
>PRK01844 hypothetical protein; Provisional
Probab=57.77 E-value=28 Score=18.61 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+=.|+.+-++.++.++ |..+++..++++.
T Consensus 36 NPpine~mir~Mm~QM-GqkPSekki~Q~m 64 (72)
T PRK01844 36 NPPINEQMLKMMMMQM-GQKPSQKKINQMM 64 (72)
T ss_pred CCCCCHHHHHHHHHHh-CCCccHHHHHHHH
Confidence 4468999999999999 9999999998888
No 153
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=57.45 E-value=36 Score=19.76 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=42.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 14 SVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 14 ~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
-.+|-+++.-++-.-+..+++.++... |....++.+..++ +++. |+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sV-G~E~d~e~i~~vi----sel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESV-GAEIDDERINLVL----SELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHh-CcccCHHHHHHHH----HHhc----CC-CHHHHHH
Confidence 355667777888889999999999999 9999998888888 7773 54 6667653
No 154
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=57.00 E-value=23 Score=23.56 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 25 NGKVSFNDILEVLR----DLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 25 ~G~I~~~el~~~l~----~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
--.++...+..++. ...|..++++...-+-+.++..-....+..|++..|++
T Consensus 176 p~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp -SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CCcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 45677888877764 23378999999888887777776665678999999985
No 155
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=56.88 E-value=29 Score=24.44 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=44.4
Q ss_pred hHhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 5 GYHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGS---FMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 5 ~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~---~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
....+-.+|+.-|+.+=.+.++......+...-+.+ .. ++-..+ +-++|..+|.|.|+.++..|...+...
T Consensus 205 eL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~-d~s~~p~CKds----~gWMFnklD~N~Dl~Ld~sEl~~I~ld 278 (434)
T KOG3555|consen 205 ELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGF-DTSILPICKDS----LGWMFNKLDTNYDLLLDQSELRAIELD 278 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCcchhhccccccc-ccccCcchhhh----hhhhhhccccccccccCHHHhhhhhcc
Confidence 344555667777887766666665555444442222 22 122233 344569999999999999998877544
No 156
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=54.47 E-value=11 Score=26.20 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..-.+.+|+..|.|+|.+||..|++..+...
T Consensus 369 rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 369 RKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred HHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 4456788999999999999999999877543
No 157
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.82 E-value=58 Score=23.73 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
.+.++.+-+..|-|++|.|+.+|=-.+++.-
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 5678888889999999999998877776644
No 158
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=53.65 E-value=24 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 53 VLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 53 ~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
...++|+..|.+++|.++|.+++..+..
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~ 583 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSI 583 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHH
Confidence 3466789999999999999999987654
No 159
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.58 E-value=47 Score=20.29 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=39.0
Q ss_pred HHHHHhcCCCCCcccHHHHHH---HHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 15 VIFKVYDSDCNGKVSFNDILE---VLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~---~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
-.|... +-||.++..|... +++. ...++.+++..++ .....-+...+++..|...+.+
T Consensus 34 Llf~Vm--~ADG~v~~~E~~a~r~il~~--~f~i~~~~l~ali----~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVM--EADGTVSESEREAFRAILKE--NFGIDGEELDALI----EAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHH--hcccCcCHHHHHHHHHHHHH--HcCCCHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHH
Confidence 556665 4467788777544 3333 3467888888888 6655555667888888877764
No 160
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=52.83 E-value=43 Score=19.18 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 42 GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
|...++.+++..+..+.+... +|.++|.+.+...|.
T Consensus 64 gI~vsd~evd~~i~~ia~~n~------ls~~ql~~~L~~~G~ 99 (118)
T PF09312_consen 64 GIKVSDEEVDEAIANIAKQNN------LSVEQLRQQLEQQGI 99 (118)
T ss_dssp T----HHHHHHHHHHHHHHTT--------HHHHHHHCHHCT-
T ss_pred CCCCCHHHHHHHHHHHHHHcC------CCHHHHHHHHHHcCC
Confidence 778899999999866666553 567777777666554
No 161
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=52.21 E-value=44 Score=20.25 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC-----CCcccHHHHHHHHhcCCC-ceeEeecC
Q 034521 28 VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR-----DSYLTLGDFIKVFGNSGL-KMEVEVPV 91 (92)
Q Consensus 28 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~g~I~~~ef~~~l~~~~~-~~~~~~~~ 91 (92)
++.+++..+...+ ..++|++++..++ +.++.-+ +-.|+..--..++...-- .-.+.||.
T Consensus 27 WT~eDV~~~a~gm-e~~lTd~E~~aVL----~~I~~~~~~~~~~~GVs~~~V~el~~~~r~~~R~VtVPA 91 (139)
T PF07128_consen 27 WTREDVRALADGM-EYNLTDDEARAVL----ARIGDIPEDQRHEEGVSSGTVMELIREVRRAARQVTVPA 91 (139)
T ss_pred ecHHHHHHHHhcC-CCCCCHHHHHHHH----HHHhcCccccchhccccHHHHHHHHHHHHhcCCcccccH
Confidence 5688888776655 6678999988888 6665421 223666554455543222 25566664
No 162
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=52.15 E-value=15 Score=25.47 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHH-------------HHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 44 FMSDEQREQVLT-------------QVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 44 ~~~~~~~~~~~~-------------~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+-+.+.+.++|+ .+|..+|.|+||..+-.|...++..
T Consensus 223 PGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 223 PGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred CCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHH
Confidence 445566666663 3778999999999999998877654
No 163
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=51.74 E-value=8.3 Score=22.43 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=8.7
Q ss_pred CCCcccHHHHHHHHH
Q 034521 24 CNGKVSFNDILEVLR 38 (92)
Q Consensus 24 ~~G~I~~~el~~~l~ 38 (92)
-||.|+..|...+..
T Consensus 36 aDG~v~~~E~~~i~~ 50 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQ 50 (140)
T ss_dssp TTSS--CHHHHHHHH
T ss_pred cCCCCCHHHHHHHHH
Confidence 578888888765544
No 164
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=51.35 E-value=88 Score=23.21 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=45.8
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC----C-CCCCcccHHHHHHHHhc
Q 034521 15 VIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAG----Y-TRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d----~-~~~g~I~~~ef~~~l~~ 80 (92)
-+|.+|-..+.++++..-|..++++. |..-++.-+.++++.+ +.+| . ...+.++-+-|.+++..
T Consensus 90 LLFyLiaegq~ekipihKFiTALkst-GLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKST-GLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHc-CCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhhcc
Confidence 45777755667999999999999999 9887777777776433 3333 2 23446888889887654
No 165
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=51.11 E-value=31 Score=17.82 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC
Q 034521 23 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR 65 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 65 (92)
..++-++...+...+... |..++++.+...+ +.++.+|
T Consensus 9 ~~~~P~g~~~l~~~L~~~-g~~~se~avRrrL----r~me~~G 46 (66)
T PF08461_consen 9 ESDKPLGRKQLAEELKLR-GEELSEEAVRRRL----RAMERDG 46 (66)
T ss_pred HcCCCCCHHHHHHHHHhc-ChhhhHHHHHHHH----HHHHHCC
Confidence 355778999999988887 8888888888888 7776554
No 166
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=50.71 E-value=60 Score=21.62 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=31.1
Q ss_pred CCCCCcccHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 22 SDCNGKVSFNDILEVLRDLS-GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 22 ~~~~G~I~~~el~~~l~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
...||.|+..|+. ..+.+. ...++.++..... .+|.... ....++.+|++.+..
T Consensus 66 AkADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~-~lf~~~k---~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 66 AKAKGRVTEADIR-IASQLMDRMNLHGEARRAAQ-QAFREGK---EPDFPLREKLRQFRS 120 (267)
T ss_pred HhcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHH-HHHHHhc---ccCCCHHHHHHHHHH
Confidence 4668999999987 334331 1245655533333 3335443 234778888876643
No 167
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=50.67 E-value=44 Score=18.74 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=11.8
Q ss_pred CCcccHHHHHHHHhc
Q 034521 66 DSYLTLGDFIKVFGN 80 (92)
Q Consensus 66 ~g~I~~~ef~~~l~~ 80 (92)
+|.|+.+||..-+..
T Consensus 37 ~~~i~~EeF~~~Lq~ 51 (92)
T smart00549 37 NGTITAEEFTSRLQE 51 (92)
T ss_pred hCCCCHHHHHHHHHH
Confidence 578999999876654
No 168
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.33 E-value=21 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
....|.-++.+.|.+.||.++..||..++..+
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 34567888999999999999999999887533
No 169
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=49.29 E-value=28 Score=19.03 Aligned_cols=45 Identities=9% Similarity=0.281 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC--CCCCCcccHHHH
Q 034521 29 SFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAG--YTRDSYLTLGDF 74 (92)
Q Consensus 29 ~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~g~I~~~ef 74 (92)
+..||...+..- ...++..++..+++.++..+- ...++.|.+..|
T Consensus 2 ~k~eli~~i~~~-~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIATQ-QSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 456666666543 335677777777766555541 223445655554
No 170
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.24 E-value=41 Score=17.92 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 24 CNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.+=.|+.+-++.++.++ |..+|+..+.++.
T Consensus 35 ~NPpine~~iR~M~~qm-GqKpSe~kI~Qvm 64 (71)
T COG3763 35 DNPPINEEMIRMMMAQM-GQKPSEKKINQVM 64 (71)
T ss_pred hCCCCCHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 34578999899999998 9999999988887
No 171
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=49.10 E-value=1.3e+02 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
..+++..|+..|.-.+|++..+++.......
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 4567777888888899999999998887666
No 172
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=48.89 E-value=1.4e+02 Score=24.08 Aligned_cols=64 Identities=6% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcC----------CCCCHHHHHHHHHHHHHHhCCCC----CCcccHHHHHHH
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSG----------SFMSDEQREQVLTQVFKDAGYTR----DSYLTLGDFIKV 77 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~----------~~~~~~~~~~~~~~~~~~~d~~~----~g~I~~~ef~~~ 77 (92)
.+..+|..+-.++.-+++.++|..++..- . ....+..+..++ ..+.++. .|.++.+-|+..
T Consensus 222 eie~iF~ki~~~~kpylT~~ql~dfln~~-QrDpRLNeilfp~~~~~r~~~li----ekyEp~~~~a~~gqms~dgf~ry 296 (1189)
T KOG1265|consen 222 EIEEIFRKISGKKKPYLTKEQLVDFLNKK-QRDPRLNEILFPPADPRRIQSLI----EKYEPNSDNAEKGQMSTDGFVRY 296 (1189)
T ss_pred hHHHHHHHhccCCCccccHHHHHHHHhhh-ccCcchhhhhcCCCCHHHHHHHH----HHcCCchhhhhccccchhhhHHH
Confidence 46778888888888899999999998754 2 245677888888 7777664 688999999988
Q ss_pred Hhc
Q 034521 78 FGN 80 (92)
Q Consensus 78 l~~ 80 (92)
+..
T Consensus 297 l~g 299 (1189)
T KOG1265|consen 297 LMG 299 (1189)
T ss_pred hhC
Confidence 765
No 173
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=48.15 E-value=5.3 Score=17.60 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=13.1
Q ss_pred HHHHhCCCCCCcccHHH
Q 034521 57 VFKDAGYTRDSYLTLGD 73 (92)
Q Consensus 57 ~~~~~d~~~~g~I~~~e 73 (92)
++.+-|.+++-+|+.++
T Consensus 4 LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIED 20 (30)
T ss_pred HhhccccCCCcEEEEec
Confidence 44788999988887654
No 174
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.81 E-value=70 Score=19.63 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034521 27 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRD 66 (92)
Q Consensus 27 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 66 (92)
..|.+|+..++... .++++++.+..+.+-+.....+.
T Consensus 93 ~~Sl~dL~dii~~~---f~sdeev~ey~~ei~~l~e~g~t 129 (170)
T COG4860 93 MGSLSDLADIIYAA---FLSDEEVKEYEDEIKALMEEGNT 129 (170)
T ss_pred EEeHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHcCCc
Confidence 35667777766544 67888888887776677654443
No 175
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=43.58 E-value=32 Score=15.14 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=11.3
Q ss_pred CCcccHHHHHHHHHHh
Q 034521 25 NGKVSFNDILEVLRDL 40 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~ 40 (92)
.|+|+.+++..+....
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5778888877776544
No 176
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.04 E-value=39 Score=21.17 Aligned_cols=62 Identities=13% Similarity=0.340 Sum_probs=35.1
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhc---------CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 18 KVYDSDCNGKVSFNDILEVLRDLS---------GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 18 ~~~D~~~~G~I~~~el~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
++|+...+-||+.+++..+++.-. |..++..-+.++| |.+-...|...+...=..+++.=+|
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQII---fEeE~k~G~~llpi~fLrQlI~fYG 89 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQII---FEEENKGGQNLLPISFLRQLISFYG 89 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHHH---HHHhccCCCccccHHHHHHHHHHHh
Confidence 467888899999999999987531 1223333333333 3333445555555554445444333
No 177
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=42.97 E-value=59 Score=17.97 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=21.9
Q ss_pred CcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 26 GKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 26 G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
..+|.+||...-++. +.+++.+++..++
T Consensus 13 n~iT~~eLlkyskqy-~i~it~~QA~~I~ 40 (85)
T PF11116_consen 13 NNITAKELLKYSKQY-NISITKKQAEQIA 40 (85)
T ss_pred hcCCHHHHHHHHHHh-CCCCCHHHHHHHH
Confidence 467888888887777 8888887777776
No 178
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.62 E-value=9.9 Score=31.60 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS----DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~----~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
.+...++...||++..|+|...++...++.+ ..++. .+. +++ --.+....+|.|++.+-+.++.+..
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L-~ppL~~~k~~~~--kli---~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSL-DPPLDLGKPNKR--KLI---SMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhc-CCccccCCCCCc--eee---eeecCcCCCCeeehhhHHHHHHHHh
Confidence 5677889999999999999999999999988 43221 111 222 1334445678899888777766543
No 179
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=42.51 E-value=76 Score=19.11 Aligned_cols=45 Identities=4% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhc-------CCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 10 LLFLSVIFKVYD-------SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 10 ~~~l~~~F~~~D-------~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
..|++.+-..|. .+..+.|+.+.|+..|+..+...+|++-...++
T Consensus 24 ~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF 75 (138)
T PF14513_consen 24 TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLF 75 (138)
T ss_dssp ---HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566655553 234679999999999998888888877666666
No 180
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.92 E-value=19 Score=28.08 Aligned_cols=63 Identities=17% Similarity=0.242 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..+...|+..|...+|+|+-.+....+.. ..++....-++| ...|..+-|..+...|...+..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~---s~L~~qvl~qiw----s~~d~~~~g~l~~q~f~~~lrl 73 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSK---SGLPDQVLGQIW----SLADSSGKGFLNRQGFYAALRL 73 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhc---cccchhhhhccc----cccccccCCccccccccccchH
Confidence 44667899999999999999988877653 456777777777 8999998899999888765543
No 181
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=41.92 E-value=95 Score=22.56 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=36.8
Q ss_pred CCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 034521 22 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 77 (92)
Q Consensus 22 ~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 77 (92)
.|.+||++.. +..+...+ +. ...+++.+++ ..+..+|+-|=|.=++.|+..+
T Consensus 120 Ldd~GYl~~~-le~~~~~l-~~-~~~~eve~vl-~~iQ~ldP~GV~Ar~l~EcL~l 171 (444)
T COG1508 120 LDDEGYLTES-LEEIAELL-GS-VDEEEVEKVL-ARIQSLDPAGVGARDLRECLLL 171 (444)
T ss_pred cCcCCCcccC-HHHHHHhc-cc-ccHHHHHHHH-HHHhcCCCCccccCcHHHHHHH
Confidence 4778998776 44444444 43 6677777665 4558899999999999998654
No 182
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=40.01 E-value=48 Score=17.75 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 12 FLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.++.+...- ...|+||..++..++... .++.+.+..++
T Consensus 8 ~i~~Li~~g--K~~G~lT~~eI~~~L~~~---~~~~e~id~i~ 45 (82)
T PF03979_consen 8 AIKKLIEKG--KKKGYLTYDEINDALPED---DLDPEQIDEIY 45 (82)
T ss_dssp HHHHHHHHH--HHHSS-BHHHHHHH-S-S------HHHHHHHH
T ss_pred HHHHHHHHH--hhcCcCCHHHHHHHcCcc---CCCHHHHHHHH
Confidence 344444432 356999999999887633 46777777776
No 183
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=39.94 E-value=62 Score=19.74 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=28.8
Q ss_pred hHhHHHHHHHH---HHHHhcCCCCCcccHHHHHHHHHHh---cCCCCCHHHHH
Q 034521 5 GYHLLLLFLSV---IFKVYDSDCNGKVSFNDILEVLRDL---SGSFMSDEQRE 51 (92)
Q Consensus 5 ~~~~~~~~l~~---~F~~~D~~~~G~I~~~el~~~l~~~---~~~~~~~~~~~ 51 (92)
|.+.....+.. --...|.++.+|+|..+++.++-.+ ++..+|-++.-
T Consensus 60 gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~L 112 (148)
T PF12486_consen 60 GWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQL 112 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444433 3455678888899999999876433 25566655443
No 184
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=39.93 E-value=1.1e+02 Score=20.38 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCCcccHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHHHh
Q 034521 24 CNGKVSFNDILEVLRDLSG----------------SFMSDEQREQVLTQVFKDA 61 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~ 61 (92)
.+|.||..|+...++..++ ...++.++++.+..+.+.+
T Consensus 31 ~~~~IT~~e~~~~~k~~~~~~~L~~~I~~~l~~~~i~vs~~evd~~i~~i~~~~ 84 (287)
T PRK03095 31 KAGDITKDEFYEQMKTQAGKQVLNNMVMEKVLIKNYKVEDKEVDKKYDEMKKQY 84 (287)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 4678888887665543322 3667778877776665554
No 185
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=39.56 E-value=46 Score=15.75 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCC-CCcccHHHHHHHHhc
Q 034521 50 REQVLTQVFKDAGYTR-DSYLTLGDFIKVFGN 80 (92)
Q Consensus 50 ~~~~~~~~~~~~d~~~-~g~I~~~ef~~~l~~ 80 (92)
+..++.-+.+....+| ..+++..||..++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3445555555555554 447999999998865
No 186
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=39.25 E-value=69 Score=17.71 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 75 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~ 75 (92)
.--|+..+++..+....+...+ .+...+- .-.|...+++||.=||-
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk----~TiDlT~n~~iS~FeFd 65 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSG-LEAMALK----STIDLTCNDYISNFEFD 65 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSH-HHHHHHH----HHH-TTSSSEEEHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCch-HHHHHHH----HHHhcccCCccchhhhH
Confidence 3568999999999988443333 3434444 56799999999987764
No 187
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=38.68 E-value=86 Score=19.69 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=31.4
Q ss_pred CCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 22 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 22 ~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
.|.+|+++. ++..+...+ ..+.+++.+++. .++.+|+-|=|.=+..|++-
T Consensus 45 LD~~GyL~~-~~~eia~~l---~~~~~~v~~~l~-~lQ~leP~GigAr~l~EcLl 94 (194)
T PF04963_consen 45 LDDDGYLTE-SLEEIAEEL---GVSEEEVEKALE-LLQSLEPAGIGARDLQECLL 94 (194)
T ss_dssp BTTTSTCSS--HHHHHHHC---TS-HHHHHHHHH-HHHTTSS--TTTS-TTHHHH
T ss_pred CCCCCccCC-CHHHHHHHh---CCCHHHHHHHHH-HHHcCCCCccCcCCHHHHHH
Confidence 467899873 344444444 378888888874 44789999999888888753
No 188
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=38.10 E-value=81 Score=18.49 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=18.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 38 RDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
+.. |...++++++..+.....-.. +|..+-+.|.+.+...+.
T Consensus 94 ~~~-gi~vsd~ev~~~i~~~~~f~~---~g~~~~~~f~~~L~~~g~ 135 (154)
T PF13624_consen 94 KKL-GISVSDAEVDDAIKQIPAFQE---NGKFDKEAFEEFLKQQGM 135 (154)
T ss_dssp HHT-T----HHHHHHHHHH--HHHH---H----HHHHHHHHH----
T ss_pred HHc-CCCCCHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhhc
Confidence 344 678889999888855221111 266778888888877655
No 189
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=37.95 E-value=59 Score=16.53 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVF 78 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l 78 (92)
...++.+.... .+.+|.++..++...++.. +..+|...=|+-++.+|++.+
T Consensus 7 ~~~l~~ll~~~-~~~~g~v~ls~l~~~~~~~-----------------~~~f~~~~yG~~~l~~ll~~~ 57 (74)
T PF12872_consen 7 KKLLRELLESQ-KGEDGWVSLSQLGQEYKKK-----------------YPDFDPRDYGFSSLSELLESL 57 (74)
T ss_dssp HHHHHHHHHHT-CTTTSSEEHHHHHHHHHHH-----------------HTT--TCCTTSSSHHHHHHT-
T ss_pred HHHHHHHHHhC-cCCCceEEHHHHHHHHHHH-----------------CCCCCccccCCCcHHHHHHhC
Confidence 44444444221 2335667777776666554 255677777888888888653
No 190
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=37.94 E-value=68 Score=22.64 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 11 LFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 11 ~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
..+......||+.+.|+++.-..+-++..++|..+-+. .+-++ ... .++.|-+.+-.|.+.+.
T Consensus 110 lllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dk-lryIf----s~i-sds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 110 LLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDK-LRYIF----SLI-SDSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHH-HHHHH----HHH-ccchHHHHHHHHHHHHH
Confidence 34445556789999999999888888887766555532 23333 444 45567655555555443
No 191
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.27 E-value=1.2e+02 Score=19.88 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 034521 22 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQ 56 (92)
Q Consensus 22 ~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~ 56 (92)
...||.|+-.|-..++.++ ...-.+.+.+.|+++
T Consensus 121 AkaDGhIDe~ERa~I~~~l-~esG~d~e~~~~le~ 154 (225)
T COG2979 121 AKADGHIDEKERARIMQKL-QESGVDPEAQAFLEQ 154 (225)
T ss_pred HhhcCCcCHHHHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 4678999999998888666 444455666666643
No 192
>PRK01060 endonuclease IV; Provisional
Probab=37.16 E-value=49 Score=21.55 Aligned_cols=27 Identities=7% Similarity=0.172 Sum_probs=22.1
Q ss_pred CCCcccHHHHHHHHhcCCC---ceeEeecC
Q 034521 65 RDSYLTLGDFIKVFGNSGL---KMEVEVPV 91 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~---~~~~~~~~ 91 (92)
++|.|++++|...+...+. -+.++.|.
T Consensus 233 G~G~id~~~~~~~L~~~~y~g~~l~lE~~~ 262 (281)
T PRK01060 233 GEGTIGFDALRYIVHDPRFDGIPKILETPY 262 (281)
T ss_pred cCCcCCHHHHHHHHhCcccCCCeEEEeCCC
Confidence 6789999999999998765 47777764
No 193
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.98 E-value=1.1e+02 Score=20.04 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 22 SDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 22 ~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
-|+.|.+....|...+.++ ..+++..|+..+-
T Consensus 162 G~gegQVpL~kL~~~l~KL-p~~lt~~ev~~v~ 193 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKL-PRNLTKAEVDAVN 193 (224)
T ss_pred cCCCCceeHHHHHHHHHhC-CccCCHHHHHHHH
Confidence 3689999999999999999 8899999988876
No 194
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=36.66 E-value=61 Score=20.58 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=15.3
Q ss_pred CCCCCcccHHHHHHHHHHh
Q 034521 22 SDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 22 ~~~~G~I~~~el~~~l~~~ 40 (92)
...||.|+.+|-..+...+
T Consensus 90 AkADG~ID~~Er~~I~~~l 108 (188)
T PF04391_consen 90 AKADGHIDEEERQRIEGAL 108 (188)
T ss_pred HHcCCCCCHHHHHHHHHHH
Confidence 4568999999988887766
No 195
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=36.18 E-value=1.1e+02 Score=18.99 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=38.6
Q ss_pred CCCCcccHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 23 DCNGKVSFNDILEVLRDLSG-----------SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.+|.|+...|..++..-+| ..++.+++..++.++..-+..++ ++-++|..++.+
T Consensus 95 ~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkK 160 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKK 160 (175)
T ss_pred CcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHH
Confidence 45788999998887764435 47888999999888878776654 444555555443
No 196
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=35.89 E-value=54 Score=15.47 Aligned_cols=15 Identities=13% Similarity=-0.040 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHh
Q 034521 6 YHLLLLFLSVIFKVY 20 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~ 20 (92)
-+...++|+.+|+.+
T Consensus 26 eeEt~qkL~~AF~iL 40 (41)
T PF11590_consen 26 EEETRQKLRRAFDIL 40 (41)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 445688899999864
No 197
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.82 E-value=48 Score=17.54 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.4
Q ss_pred CCCcccHHHHHHHHHHh
Q 034521 24 CNGKVSFNDILEVLRDL 40 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~ 40 (92)
..|++.-+|+..++...
T Consensus 27 ~~Gkv~~ee~n~~~e~~ 43 (75)
T TIGR02675 27 ASGKLRGEEINSLLEAL 43 (75)
T ss_pred HcCcccHHHHHHHHHHh
Confidence 45999999998887654
No 198
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=35.61 E-value=41 Score=19.94 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=14.9
Q ss_pred HHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 59 KDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 59 ~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
+.+- .|.++|.+||+-+.+.|+
T Consensus 77 k~hq---~Gqtdf~tfC~~~A~AGI 98 (125)
T PF07166_consen 77 KRHQ---QGQTDFETFCKDAAKAGI 98 (125)
T ss_dssp HHHH---HT---HHHHHHHHHHTT-
T ss_pred HHHH---cCCccHHHHHHHHHhcCC
Confidence 5553 688999999999999888
No 199
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=34.96 E-value=1.1e+02 Score=24.19 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=35.3
Q ss_pred chhh-HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCC
Q 034521 2 TKTG-YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMS 46 (92)
Q Consensus 2 ~~~~-~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~ 46 (92)
++.| +.+..++++.+++.+.+-++++-+.+=+..+-..+ |....
T Consensus 704 EKdGTFtNtERRiQrlykvleP~gdsrpDW~Iiq~vA~~l-G~~wn 748 (978)
T COG3383 704 EKDGTFTNTERRIQRLYKVLEPLGDSRPDWEIIQEVANAL-GAGWN 748 (978)
T ss_pred cccCceechHHHHHHHHHHhccccCCCccHHHHHHHHHHh-cCCCC
Confidence 3444 78889999999999999999999988777776666 76543
No 200
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.60 E-value=46 Score=20.97 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.+.++++|.-||...=-..+.+++.+.+..- +.--....+..++
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~-~IIRnr~KI~Avi 95 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDD-GIIRNRGKIEATI 95 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc-cchhhHHHHHHHH
Confidence 4568899999999888888888888776543 3222233444444
No 201
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=33.87 E-value=97 Score=17.80 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.2
Q ss_pred ccHHHHHH
Q 034521 69 LTLGDFIK 76 (92)
Q Consensus 69 I~~~ef~~ 76 (92)
++-++..+
T Consensus 95 ~~~e~l~~ 102 (112)
T PRK14981 95 LSPEELDE 102 (112)
T ss_pred CCHHHHHH
Confidence 44444433
No 202
>PF13592 HTH_33: Winged helix-turn helix
Probab=33.85 E-value=67 Score=15.98 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.+..+..++...+...+|...+..-+.+++
T Consensus 2 ~~~wt~~~i~~~I~~~fgv~ys~~~v~~lL 31 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEEEFGVKYSPSGVYRLL 31 (60)
T ss_pred CCcccHHHHHHHHHHHHCCEEcHHHHHHHH
Confidence 356677777777766667777777776666
No 203
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=33.61 E-value=49 Score=14.32 Aligned_cols=15 Identities=20% Similarity=0.231 Sum_probs=10.9
Q ss_pred CcccHHHHHHHHHHh
Q 034521 26 GKVSFNDILEVLRDL 40 (92)
Q Consensus 26 G~I~~~el~~~l~~~ 40 (92)
|-||.+|+...-..+
T Consensus 15 G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 15 GEISEEEYEQKKARL 29 (31)
T ss_pred CCCCHHHHHHHHHHH
Confidence 888888887765443
No 204
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=32.75 E-value=37 Score=28.98 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHhc
Q 034521 57 VFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 57 ~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
-|+++|+++.|-||-.+|.+.|..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~ 4085 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG 4085 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc
Confidence 457899999999999999998865
No 205
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []. The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
Probab=32.50 E-value=15 Score=23.52 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHHHHHHhcCCCCC
Q 034521 4 TGYHLLLLFLSVIFKVYDSDCNG 26 (92)
Q Consensus 4 ~~~~~~~~~l~~~F~~~D~~~~G 26 (92)
.+|+.|...|..+|..++....|
T Consensus 131 ~sY~~L~~~L~~MF~~~~i~~~~ 153 (215)
T PF02309_consen 131 SSYEELSSALEKMFSCFSIEQCG 153 (215)
T ss_dssp -----------------------
T ss_pred hCHHHHHHHHHHhcCCCCccccc
Confidence 46788888888888766554333
No 206
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=32.16 E-value=65 Score=15.31 Aligned_cols=39 Identities=21% Similarity=0.089 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.....|...|.. +.+.+..++..+...+ .++...|..|+
T Consensus 10 ~~~~~Le~~f~~-----~~~P~~~~~~~la~~~---~l~~~qV~~WF 48 (59)
T cd00086 10 EQLEELEKEFEK-----NPYPSREEREELAKEL---GLTERQVKIWF 48 (59)
T ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHHHH---CcCHHHHHHHH
Confidence 345667777776 5688888888887776 47888888887
No 207
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=31.97 E-value=1.2e+02 Score=23.89 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTR 65 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 65 (92)
...+..+.+.||...+|+|..-+|+..+-.+++.... +.+..++ +..-.++
T Consensus 469 D~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~le-ek~~ylF----~~vA~~~ 519 (966)
T KOG4286|consen 469 DMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLE-DKYRYLF----KQVASST 519 (966)
T ss_pred HHHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhH-HHHHHHH----HHHcCch
Confidence 3456788999999999999999999988877444433 3444555 6664443
No 208
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=31.65 E-value=51 Score=17.37 Aligned_cols=14 Identities=7% Similarity=0.441 Sum_probs=10.3
Q ss_pred cccHHHHHHHHhcC
Q 034521 68 YLTLGDFIKVFGNS 81 (92)
Q Consensus 68 ~I~~~ef~~~l~~~ 81 (92)
.||+++|+.+++..
T Consensus 6 ~is~~~~l~~Y~G~ 19 (68)
T PF11197_consen 6 NISYQEFLAYYQGA 19 (68)
T ss_pred EcCHHHHHHhcccc
Confidence 37888888877653
No 209
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=31.21 E-value=32 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 13 LSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 13 l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
+..+....+....--+-..+++.++..+
T Consensus 25 l~~a~~~l~~~~~~dl~a~~L~~A~~~L 52 (73)
T PF12631_consen 25 LEDALEALENGLPLDLVAEDLREALESL 52 (73)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3444444433333334445555554433
No 210
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=31.03 E-value=82 Score=17.12 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=15.9
Q ss_pred CcccHH-------HHHHHHHHhcCCCCCHHHHHHHH
Q 034521 26 GKVSFN-------DILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 26 G~I~~~-------el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
|+++.+ |+..+++++ |..+++++..-+-
T Consensus 8 GKls~d~y~~qkvEIL~ALrkL-ge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 8 GKLSKDVYTQQKVEILTALRKL-GEKLSPEEEAFLE 42 (78)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHT-T----HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHH
Confidence 666654 456788998 9999998765544
No 211
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=30.82 E-value=65 Score=20.49 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=25.8
Q ss_pred cCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 21 DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 21 D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
..++||++..+++.+.=..- +.+.+-+++.+++
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r-~~~~t~ddi~riV 60 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFR-GANHTIDDIRRIV 60 (207)
T ss_pred cccCCCceEHHHHhccchhc-ccCCcHHHHHHHH
Confidence 45789999999998764444 6677788888887
No 212
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=30.80 E-value=51 Score=21.07 Aligned_cols=23 Identities=17% Similarity=0.435 Sum_probs=18.3
Q ss_pred HHhcCCCCCcccHHHHHHHHHHh
Q 034521 18 KVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 18 ~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
.-+|.|++|.++.+|+..+....
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHH
Confidence 35789999999999998776544
No 213
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.07 E-value=70 Score=20.77 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=20.4
Q ss_pred CCCcccHHHHHHHHhcCCC--ceeEee
Q 034521 65 RDSYLTLGDFIKVFGNSGL--KMEVEV 89 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~--~~~~~~ 89 (92)
++|.|++.++.+.+...+. -+++++
T Consensus 229 G~G~id~~~~~~~L~~~gy~G~~~~E~ 255 (284)
T PRK13210 229 GEGCVDFVGIFKTLKELNYRGPFLIEM 255 (284)
T ss_pred CCcccCHHHHHHHHHHcCCCceEEEEE
Confidence 7899999999999999876 455553
No 214
>PHA02105 hypothetical protein
Probab=29.73 E-value=88 Score=16.05 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHh
Q 034521 27 KVSFNDILEVLRDLSG--SFMSDEQREQVLTQVFKDAGYTR--DSYLTLGDFIKVFG 79 (92)
Q Consensus 27 ~I~~~el~~~l~~~~~--~~~~~~~~~~~~~~~~~~~d~~~--~g~I~~~ef~~~l~ 79 (92)
+++++|++.+...--. .++..+-++++- ..+.... --.+||+||.+++-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~----svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLK----TVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHH----HhccccceEEEEEeHHHhccccc
Confidence 4677888877654311 233444444433 4444332 23589999987763
No 215
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=29.70 E-value=1.7e+02 Score=19.46 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCcccHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHHHh
Q 034521 24 CNGKVSFNDILEVLRDLSG----------------SFMSDEQREQVLTQVFKDA 61 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~ 61 (92)
.+|.|+.+|+...+...+| ...++++++..+..+...+
T Consensus 32 ~~g~it~~e~~~~~~~~~g~~~l~~li~~k~~~~~i~vsd~ev~~~i~~~~~~~ 85 (283)
T PRK02998 32 KVGNITEKELSKELRQKYGESTLYQMVLSKALLDKYKVSDEEAKKQVEEAKDKM 85 (283)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 4678898888665543222 3667778777775555443
No 216
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=29.49 E-value=97 Score=16.46 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=17.5
Q ss_pred CcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 26 GKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 26 G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+.|+..|+..+-..+....++.++++++.
T Consensus 27 ~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LC 55 (71)
T PF04282_consen 27 SDVSASEISAAEQELIQEGMPVEEIQKLC 55 (71)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 45666666665554444556766766665
No 217
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=29.39 E-value=13 Score=22.47 Aligned_cols=46 Identities=7% Similarity=0.184 Sum_probs=26.4
Q ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 27 KVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 27 ~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
.|+.+|+++++.+. ...++..-. +-.=.+.|..|+++-....+...
T Consensus 9 ~vTldevr~Av~~f-~~~lp~gi~--------rt~lv~~d~~iD~~~L~~yL~g~ 54 (140)
T PF13075_consen 9 DVTLDEVRRAVHQF-EEDLPKGIN--------RTILVNDDQSIDFERLAPYLGGI 54 (140)
T ss_pred cccHHHHHHHHHHH-HHhCccCCc--------eEEEEcCCceecHHHHhhhcCCC
Confidence 46777777777766 334333211 11123456778888877776554
No 218
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.09 E-value=1.8e+02 Score=19.55 Aligned_cols=66 Identities=24% Similarity=0.278 Sum_probs=39.3
Q ss_pred HHHHHHHHh-cCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 12 FLSVIFKVY-DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 12 ~l~~~F~~~-D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
++-+.|..| |++.+..|-.+-+..+...+ |..+.+-.+ -++.+ .++...-+..+.++|..-+...+
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dl-g~~p~~i~~-LvlAw---kl~A~~m~~Fsr~ef~~g~~~l~ 131 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDL-GVEPEDISV-LVLAW---KLGAATMCEFSREEFLKGMTALG 131 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHh-CCCchhHHH-HHHHH---HhccchhhhhhHHHHHHHHHHcC
Confidence 344455554 66666788888888888888 665543222 22211 22344456788888887655443
No 219
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=28.94 E-value=1.6e+02 Score=18.84 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHHhCCCCC
Q 034521 8 LLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLS-G-SFMSDEQREQVLTQVFKDAGYTRD 66 (92)
Q Consensus 8 ~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~d~~~~ 66 (92)
.+-.++-++....-..+.|-|+..|+...+.+.. | .-++++++.+.+ +.+..-+.
T Consensus 94 ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~----~~l~~lg~ 150 (223)
T PF04157_consen 94 ELAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRAC----KLLEVLGL 150 (223)
T ss_dssp HHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHH----HHHCCCTS
T ss_pred HHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHH----HHHHHcCC
Confidence 3344444444444444555666666666665432 1 244555555555 55544443
No 220
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=28.77 E-value=1.2e+02 Score=17.20 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=10.9
Q ss_pred CCcccHHHHHHHHhc
Q 034521 66 DSYLTLGDFIKVFGN 80 (92)
Q Consensus 66 ~g~I~~~ef~~~l~~ 80 (92)
+|.|+.+||..-+..
T Consensus 38 ~~~i~~EeF~~~Lq~ 52 (96)
T PF07531_consen 38 DGKIEAEEFTSKLQE 52 (96)
T ss_dssp TTSS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 578999999877654
No 221
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=28.05 E-value=1.2e+02 Score=17.09 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 034521 28 VSFNDILEVLRDLSG-SFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFI 75 (92)
Q Consensus 28 I~~~el~~~l~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~ 75 (92)
++.+|+..+...+.. ..++.+++..++++|.......+.....-.+|.
T Consensus 30 l~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~ 78 (108)
T PF14842_consen 30 LDEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFA 78 (108)
T ss_dssp S-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---S-HHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHccccccChHHHH
Confidence 455666666555422 367888889998888775544444444445554
No 222
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=27.92 E-value=87 Score=16.66 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 46 SDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 46 ~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
+......+...+...+...+...|+-++...
T Consensus 33 ~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~ 63 (90)
T PF03477_consen 33 SEEDAEEIASEVENKLYDSGKEEISTEEIQD 63 (90)
T ss_dssp TST-HHHHHHHHHTC-ST----TEEHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCCCeeHHHHHH
Confidence 3334444444444444333222455555433
No 223
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.61 E-value=1.2e+02 Score=16.80 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=12.9
Q ss_pred CCCCcccHHHHHHHHHHh
Q 034521 23 DCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~ 40 (92)
..||.|+..|-..+...+
T Consensus 11 kADG~id~~E~~~I~~~~ 28 (95)
T cd07178 11 KADGHIDEAERARILGEL 28 (95)
T ss_pred HhcCCCCHHHHHHHHHHH
Confidence 457888888877665544
No 224
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.34 E-value=89 Score=20.02 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=19.3
Q ss_pred CCCcccHHHHHHHHhcCCC--ceeEe
Q 034521 65 RDSYLTLGDFIKVFGNSGL--KMEVE 88 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~--~~~~~ 88 (92)
++|.|++.++.+.+.+.+. -++++
T Consensus 214 G~G~id~~~il~~L~~~gy~g~~~~E 239 (254)
T TIGR03234 214 GTGEINYRFLFAVLDRLGYDGWVGLE 239 (254)
T ss_pred CCCccCHHHHHHHHHHCCCCceEEEE
Confidence 5699999999999998876 44444
No 225
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=27.30 E-value=2.2e+02 Score=19.90 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 034521 32 DILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 32 el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~ 81 (92)
-+...++.+ |..++++++..++..+-...+.. ...++-+|+..++.+.
T Consensus 324 ~v~~~l~~~-g~~~~~~~~~~~~~~vk~~~~~~-~~~~~~~el~~~~~~~ 371 (378)
T PRK11858 324 ALKNKLKEY-GIELSREELCELLEKVKELSERK-KRSLTDEELKELVEDV 371 (378)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 345566777 88999988998887766666544 3679999998887654
No 226
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=27.23 E-value=1.4e+02 Score=17.68 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 034521 24 CNGKVSFNDILEVLRDLSG--------SFMSDEQREQVLTQVFKDAGYTRDS-YLTLGDFIKV 77 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~~g-~I~~~ef~~~ 77 (92)
++-.+|.+||.+.+..-.+ ..+..+++.++. +.+...+.+ .++..|-.++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~----~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRAL----AFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHH----HHHHhccccCCCCHHHHHHH
Confidence 6677888888888765411 145677777777 666555444 4888887654
No 227
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=27.22 E-value=1.1e+02 Score=16.28 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHH
Q 034521 30 FNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYT-RDSYLTLGDFIKVF 78 (92)
Q Consensus 30 ~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~g~I~~~ef~~~l 78 (92)
..++...+ .|.+.+.+.+.+.+ ...+.+ .-+.++.+|+++++
T Consensus 44 i~~le~~L---~G~~~~~~~i~~~l----~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL---IGCPYDREAIKEAL----NSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH---TTCBSSHHHHHHHH----HHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH---HhcCCCHHHHHHHH----HHhCHhhccccCCHHHHHHhC
Confidence 56666655 37788988888888 666544 34578899988764
No 228
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=27.14 E-value=1.2e+02 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
.+.++.+-...+.|.+|+|++++|..++-.+
T Consensus 56 ~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 56 REEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 5667778888889999999999998865443
No 229
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=26.86 E-value=89 Score=15.19 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.+..|...+..-|..-.|...+.++++-.+
T Consensus 16 ~~~~Sk~~l~~QL~se~ge~Ft~e~A~YAv 45 (48)
T PF07553_consen 16 TMHMSKQGLYDQLTSEYGEGFTEEEAQYAV 45 (48)
T ss_pred hccCCHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 366888888877765547788888887666
No 230
>PF14164 YqzH: YqzH-like protein
Probab=26.79 E-value=1.1e+02 Score=16.03 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHHHHH
Q 034521 44 FMSDEQREQVLTQVFK 59 (92)
Q Consensus 44 ~~~~~~~~~~~~~~~~ 59 (92)
+++..+...+...+..
T Consensus 25 pls~~E~~~L~~~i~~ 40 (64)
T PF14164_consen 25 PLSDEEWEELCKHIQE 40 (64)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3444444444433333
No 231
>PTZ00315 2'-phosphotransferase; Provisional
Probab=26.53 E-value=2.9e+02 Score=20.96 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHh------cCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 8 LLLLFLSVIFKVY------DSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 8 ~~~~~l~~~F~~~------D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.+...|..+.++. ..|.+|+++.+++....+.- +..++.+.+.+++
T Consensus 380 ~lSK~LS~lLRH~pe~~GL~ld~~Gwv~vd~LL~~~~~~-~~~~t~e~i~~VV 431 (582)
T PTZ00315 380 TYSKFMSRLLRHKADQWRVPITSNGYVLLDDILRQPPMR-NDPVSVQDVARVV 431 (582)
T ss_pred HHHHHHHHHHcCCHhhcCCCcCCCCCEEHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence 4455555555532 35789999999999887655 6678888888887
No 232
>PRK06508 acyl carrier protein; Provisional
Probab=26.20 E-value=1.3e+02 Score=16.72 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 32 DILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 32 el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
++.-.+..-+|..++.+++.++. ..-+.+..+..+..++|..+.
T Consensus 42 eli~~lE~eFgI~i~~ee~~~~~----n~~~~~~~~~~~l~~~~~~i~ 85 (93)
T PRK06508 42 DIVFAIDKAFGIKLPLEQWTQEV----NEGKVPTEEYFVLKNLCAKID 85 (93)
T ss_pred HHHHHHHHHHCCccCHHHHHHhh----cccccccchHHHHHHHHHHHH
Confidence 33444444458889999887776 555555566777777776553
No 233
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=26.18 E-value=97 Score=20.05 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=20.0
Q ss_pred CCCcccHHHHHHHHhcCCC--ceeEee
Q 034521 65 RDSYLTLGDFIKVFGNSGL--KMEVEV 89 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~--~~~~~~ 89 (92)
++|.|++.++.+.+.+.+. -+++++
T Consensus 222 G~G~id~~~i~~~L~~~gy~g~~~lE~ 248 (275)
T PRK09856 222 GEGKMPLRELMRDIIDRGYEGYCTVEL 248 (275)
T ss_pred CCCCCCHHHHHHHHHHcCCCceEEEEe
Confidence 6799999999999998876 445544
No 234
>TIGR02395 rpoN_sigma RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., PubMed:15231786). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations
Probab=26.01 E-value=2.4e+02 Score=20.27 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=35.1
Q ss_pred cCCCCCccc--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 034521 21 DSDCNGKVS--FNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKV 77 (92)
Q Consensus 21 D~~~~G~I~--~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~ 77 (92)
-.|.+|++. .+++. ..+ .++.+++..++.. +..+|+.|=|.=+..|+..+
T Consensus 105 ~LD~~GyL~~~~~eia---~~l---~~~~~~ve~~l~~-iq~leP~GIgAr~L~EcLll 156 (429)
T TIGR02395 105 NLDEDGYLEIDLEEIA---DEL---EVSEEEVEKVLEL-IQRLDPAGVGARDLQECLLL 156 (429)
T ss_pred hCCCCCCCCCCHHHHH---HHc---CCCHHHHHHHHHH-HhcCCCCccCcCCHHHHHHH
Confidence 357889877 44443 333 3577788877644 46799999999999998654
No 235
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.87 E-value=94 Score=19.93 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.9
Q ss_pred CCCCCcccHHHHHHHHhcCCC--ceeEee
Q 034521 63 YTRDSYLTLGDFIKVFGNSGL--KMEVEV 89 (92)
Q Consensus 63 ~~~~g~I~~~ef~~~l~~~~~--~~~~~~ 89 (92)
.-|+|.|+|.++.+.+...+. -+++++
T Consensus 223 ~pG~G~id~~~i~~~L~~~gy~g~~~iE~ 251 (274)
T COG1082 223 PPGDGDIDFKAIFSALREAGYDGWLVVEV 251 (274)
T ss_pred CCCCCCcCHHHHHHHHHHcCCCceEEEEe
Confidence 446899999999999988777 355553
No 236
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=25.85 E-value=40 Score=18.48 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=10.1
Q ss_pred CCCcccHHHHHHHHHHh
Q 034521 24 CNGKVSFNDILEVLRDL 40 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~ 40 (92)
.||.++..|...+...+
T Consensus 15 aDG~v~~~E~~~i~~~l 31 (111)
T cd07176 15 ADGDIDDAELQAIEALL 31 (111)
T ss_pred hccCCCHHHHHHHHHHH
Confidence 35777777766554443
No 237
>PLN03007 UDP-glucosyltransferase family protein
Probab=25.85 E-value=2.3e+02 Score=20.44 Aligned_cols=55 Identities=13% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHh-CCCCCCcccHHHHHHHHhc
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSD---EQREQVLTQVFKDA-GYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~---~~~~~~~~~~~~~~-d~~~~g~I~~~ef~~~l~~ 80 (92)
.+.++.+++.++++.++...-.. +.+.++ ....+.. ...|...-++++|++.+.+
T Consensus 422 ~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~-~~~a~~a~~~gGsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 422 GDFISREKVEKAVREVIVGEEAEERRLRAKKL-AEMAKAAVEEGGSSFNDLNKFMEELNS 480 (482)
T ss_pred cCcccHHHHHHHHHHHhcCcHHHHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 35689999999999884322111 112222 2222333 3344455677777766553
No 238
>smart00427 H2B Histone H2B.
Probab=25.80 E-value=1.3e+02 Score=16.76 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhc
Q 034521 7 HLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLS 41 (92)
Q Consensus 7 ~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~ 41 (92)
+.+.+-..++-++...++...|+..|+..+++.++
T Consensus 34 DiferIa~EAs~L~~~nkr~TltsreIqtAvrl~L 68 (89)
T smart00427 34 DIFERIAAEASKLARYNKKSTLSSREIQTAVRLIL 68 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHHc
Confidence 34444456667777778899999999999988774
No 239
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=25.70 E-value=1.5e+02 Score=18.55 Aligned_cols=17 Identities=12% Similarity=0.358 Sum_probs=12.2
Q ss_pred CcccHHHHHHHHhcCCC
Q 034521 67 SYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 67 g~I~~~ef~~~l~~~~~ 83 (92)
+.++|++|.+++...+.
T Consensus 17 ~~~~F~~F~~~W~~~~f 33 (194)
T PF09808_consen 17 ESVRFEDFKRLWREMKF 33 (194)
T ss_pred CCCCHHHHHHHHHHCCc
Confidence 46788888888776554
No 240
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=25.64 E-value=1.4e+02 Score=16.91 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 034521 28 VSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFG 79 (92)
Q Consensus 28 I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~ 79 (92)
|...+..-.+.-+ ...++++++.++...+....+... ..++...++.-+.
T Consensus 20 vP~~Dy~PLlALL-~r~Ltd~ev~~Va~~L~~~~~~~~-~~~dI~~~I~~vt 69 (96)
T PF11829_consen 20 VPPTDYVPLLALL-RRRLTDDEVAEVAAELAARGDPPV-DRIDIGVAITRVT 69 (96)
T ss_dssp B-HHHHHHHHHHH-TTTS-HHHHHHHHHHHHHHTSS-B-SCCHHHHHHHHHC
T ss_pred CCCCccHHHHHHh-cccCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHH
Confidence 6777777776666 788999999999977777665443 4567777765554
No 241
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=24.74 E-value=59 Score=16.24 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=4.0
Q ss_pred cHHHHHHHHH
Q 034521 29 SFNDILEVLR 38 (92)
Q Consensus 29 ~~~el~~~l~ 38 (92)
|.+|+..++.
T Consensus 18 t~~El~~i~~ 27 (64)
T PF09832_consen 18 TEEELDAILA 27 (64)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444444433
No 242
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=24.37 E-value=99 Score=14.83 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCCCCCHH---HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 31 NDILEVLRDLSGSFMSDE---QREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 31 ~el~~~l~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
..+...+....|..++.. .+..-+...++.. |.=++.+|...+..
T Consensus 6 ~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~ 53 (57)
T PF03705_consen 6 ERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRS 53 (57)
T ss_dssp HHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHh
Confidence 345555555557766643 3444455555655 34588888887754
No 243
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=24.28 E-value=34 Score=18.63 Aligned_cols=17 Identities=6% Similarity=0.210 Sum_probs=12.8
Q ss_pred CCCcccHHHHHHHHhcC
Q 034521 65 RDSYLTLGDFIKVFGNS 81 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~ 81 (92)
..+.||++||+.+-.+.
T Consensus 32 APmSIS~eeY~~LH~~f 48 (81)
T PF10891_consen 32 APMSISFEEYIRLHIKF 48 (81)
T ss_pred cccEeeHHHHHHHHHHH
Confidence 45789999998776554
No 244
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.00 E-value=87 Score=26.55 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCceeEeecC
Q 034521 49 QREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGLKMEVEVPV 91 (92)
Q Consensus 49 ~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~~~~~~~~~ 91 (92)
+..++| .++|++..|.|.+.+...++......+.+-.|+
T Consensus 1418 ~F~~vW----~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~ 1456 (1592)
T KOG2301|consen 1418 KFYEAW----DEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPN 1456 (1592)
T ss_pred HHHHHH----HhcChhhheeeeHhhHHHHHHhcCCccccCCCC
Confidence 344556 999999999999999888877765555555544
No 245
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.94 E-value=1.6e+02 Score=17.20 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 29 SFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 29 ~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
+..|++.++..- +..++++++++++
T Consensus 81 t~~ElRsIla~e-~~~~s~E~l~~Il 105 (114)
T COG1460 81 TPDELRSILAKE-RVMLSDEELDKIL 105 (114)
T ss_pred CHHHHHHHHHHc-cCCCCHHHHHHHH
Confidence 344555555444 4555555555555
No 246
>PLN02764 glycosyltransferase family protein
Probab=23.85 E-value=2.9e+02 Score=20.04 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=34.9
Q ss_pred CcccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 034521 26 GKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSG 82 (92)
Q Consensus 26 G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~ 82 (92)
|.++.+++.++++.+++.. -.-+++.+....+-..+...|...-++++|++.+.+..
T Consensus 390 ~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~ 447 (453)
T PLN02764 390 GWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLV 447 (453)
T ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 5789999999999885322 11233444443333444444555678888888776543
No 247
>PRK05849 hypothetical protein; Provisional
Probab=23.76 E-value=2.4e+02 Score=22.18 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=15.5
Q ss_pred CcccHHHHHHHHhcCCC-ceeEeec
Q 034521 67 SYLTLGDFIKVFGNSGL-KMEVEVP 90 (92)
Q Consensus 67 g~I~~~ef~~~l~~~~~-~~~~~~~ 90 (92)
|.+++++|+.-+..... .+.+..|
T Consensus 502 g~l~~~~FL~~YGHR~~ge~DI~sp 526 (783)
T PRK05849 502 GELSKDEFLKRYGHLRPGTYDILSP 526 (783)
T ss_pred hccCHHHHHHHhCCCCCCceecCCC
Confidence 56899999887765444 3444444
No 248
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=23.75 E-value=33 Score=22.95 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=13.6
Q ss_pred HHHhcCCCCCcccHHH
Q 034521 17 FKVYDSDCNGKVSFND 32 (92)
Q Consensus 17 F~~~D~~~~G~I~~~e 32 (92)
|..||.|++|+|+..|
T Consensus 92 f~~yD~dgDG~vd~~d 107 (286)
T TIGR03296 92 FDRYDLDGDGNFDEPD 107 (286)
T ss_pred cccccccCCCccCCCC
Confidence 6789999999998754
No 249
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=23.71 E-value=2.2e+02 Score=21.00 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHH
Q 034521 6 YHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSD--EQREQVLTQVFKD 60 (92)
Q Consensus 6 ~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 60 (92)
.....+-++.+-.++|+...|.=+..+|..+|.+. |...++ ..+.++++.++..
T Consensus 180 ~~~~~eml~dlndll~kh~~g~dt~~df~~fm~kh-ge~fpe~pr~~~el~d~laAR 235 (652)
T COG4867 180 RRRVTEMLDDLNDLLDKHARGEDTQRDFDEFMTKH-GEFFPENPRNVEELLDSLAAR 235 (652)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHhc-cccCCCCcccHHHHHHHHHHH
Confidence 33445666777778888888999999999999888 876653 3566666554443
No 250
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.37 E-value=1.1e+02 Score=19.98 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.6
Q ss_pred CCCcccHHHHHHHHhcCCC--ceeEe
Q 034521 65 RDSYLTLGDFIKVFGNSGL--KMEVE 88 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~--~~~~~ 88 (92)
++|.|++.++.+.+.+.+. -++++
T Consensus 228 G~G~id~~~i~~~L~~~gy~g~~~~E 253 (283)
T PRK13209 228 GEGVVDFERCFKTLKQSGYCGPYLIE 253 (283)
T ss_pred CCCccCHHHHHHHHHHcCCCceEEEE
Confidence 6899999999999999876 35554
No 251
>PF01320 Colicin_Pyocin: Colicin immunity protein / pyocin immunity protein; InterPro: IPR023802 Bacterial colicin and pyocin immunity proteins [, ] can bind specifically to the DNase-type colicins and pyocins and inhibit their bactericidal activity. The 1.8-angstrom crystal structure of the ImmE7 protein consists of four antiparallel alpha-helices []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. Pyocin protects a cell that harbours the plasmid ColE2 encoding colicin E2 against colicin E2; it is thus essential both for autonomous replication and colicin E2 immunity []. This entry represents the structural domain of colicin and pyocin immunity proteins.; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1GXH_A 1GXG_A 1MZ8_C 2ERH_A 1ZNV_C 1AYI_A 1UNK_A 2JBG_A 7CEI_A 1CEI_A ....
Probab=22.64 E-value=1.5e+02 Score=16.34 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHH
Q 034521 28 VSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKD 60 (92)
Q Consensus 28 I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 60 (92)
.+..||..+++.++... .++++...+++++-+.
T Consensus 10 yTE~EFl~~v~~i~~~~~~~ee~~d~lv~hF~~i 43 (85)
T PF01320_consen 10 YTESEFLEFVKEIFNAELKTEEEHDELVDHFEKI 43 (85)
T ss_dssp SBHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Confidence 45667777776665444 4555666666554443
No 252
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=22.55 E-value=1.1e+02 Score=15.70 Aligned_cols=32 Identities=34% Similarity=0.653 Sum_probs=20.7
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHH
Q 034521 15 VIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQV 53 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~ 53 (92)
.+|.+| .+++|.|...++...+ | .++..+..|
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~L----g--vs~~tIr~W 42 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKL----G--VSESTIRKW 42 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHH----C--CCHHHHHHH
Confidence 456666 4688999998887543 3 455555554
No 253
>PLN02167 UDP-glycosyltransferase family protein
Probab=22.54 E-value=3e+02 Score=19.91 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=32.3
Q ss_pred CcccHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 26 GKVSFNDILEVLRDLSGSF-MSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 26 G~I~~~el~~~l~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.++.+++..+++.++... --...+.++-+.+-+.....|...-++++|++.+.+
T Consensus 417 ~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 417 EIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred CcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 5679999999998874322 001223333333334445555566778888876654
No 254
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=1.7e+02 Score=18.62 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=31.3
Q ss_pred hhHhHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 4 TGYHLLLLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 4 ~~~~~~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
+....+.++++.-.++|-......|..+.|..++..+
T Consensus 58 tDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~ 94 (204)
T KOG0180|consen 58 TDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSL 94 (204)
T ss_pred hhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHH
Confidence 3456788999999999999999999999999888755
No 255
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=22.41 E-value=1.7e+02 Score=16.97 Aligned_cols=52 Identities=13% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 034521 15 VIFKVYDSDCNGKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIK 76 (92)
Q Consensus 15 ~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~ 76 (92)
.+|-+.-.-++..+|.+++..+++.. |.......+..++ +.+. | .+++|.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~Aa-GveVd~~~~~l~~----~~L~----G-KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAV-NADVEDDVLDNFF----KSLE----G-KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHc-CCCccHHHHHHHH----HHHc----C-CCHHHHHH
Confidence 45555566677789999999999998 8888887777777 7763 2 46666653
No 256
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=22.15 E-value=1.4e+02 Score=16.82 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=5.4
Q ss_pred cccHHHHHHHH
Q 034521 68 YLTLGDFIKVF 78 (92)
Q Consensus 68 ~I~~~ef~~~l 78 (92)
.++-++..+++
T Consensus 100 r~~ee~l~~iL 110 (117)
T PF03874_consen 100 RFSEEDLEEIL 110 (117)
T ss_dssp TSTHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45555544443
No 257
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=22.05 E-value=99 Score=19.75 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
.+.++++|.-||+.+--..+.+++.+++..-
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~ 84 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADA 84 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc
Confidence 4557899999999888888888888877643
No 258
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.04 E-value=1.1e+02 Score=19.90 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=19.7
Q ss_pred CCCcccHHHHHHHHhcCCC--ceeEe
Q 034521 65 RDSYLTLGDFIKVFGNSGL--KMEVE 88 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~--~~~~~ 88 (92)
++|.|+|..+.+.+...+. -++++
T Consensus 223 G~G~id~~~~~~aL~~~gy~G~l~iE 248 (279)
T TIGR00542 223 GEGCVDFERCFKTLKQLNYRGPFLIE 248 (279)
T ss_pred CCCccCHHHHHHHHHHhCCceeEEEE
Confidence 7899999999999999877 34544
No 259
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=21.63 E-value=61 Score=24.98 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHHHhCCCCC-----------------
Q 034521 9 LLLFLSVIFKVYDSDCNGKVSFNDILEVLRDLSGSFM-----SDEQREQVLTQVFKDAGYTRD----------------- 66 (92)
Q Consensus 9 ~~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~----------------- 66 (92)
..-..+.+|..+|.+.+++.++.++.....+. +.-+ .-.+...-+..++..+|.+++
T Consensus 435 ~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F-~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~ 513 (975)
T KOG2419|consen 435 EECFAKRILSIVDYEEDFKLSFSEFSDLSFAF-GNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYP 513 (975)
T ss_pred hhhhhhhcccccccccCceEeeehHHHHHHHH-HHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccc
Confidence 33445677888999999999988876654444 3211 111111113345577888888
Q ss_pred ------CcccHHHHHHHHh
Q 034521 67 ------SYLTLGDFIKVFG 79 (92)
Q Consensus 67 ------g~I~~~ef~~~l~ 79 (92)
|.++.+|.+.++.
T Consensus 514 ~~~~s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 514 FLKKSFGVVTVDELVALLA 532 (975)
T ss_pred ccccccCeeEHHHHHHHHH
Confidence 8899999877765
No 260
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=21.61 E-value=76 Score=20.17 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHHh
Q 034521 10 LLFLSVIFKVYDSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 10 ~~~l~~~F~~~D~~~~G~I~~~el~~~l~~~ 40 (92)
.+.++.+|.-||...=-..+.+++.+++..-
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~ 83 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDA 83 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc
Confidence 4568899999999887778888888776543
No 261
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=21.30 E-value=1.9e+02 Score=17.12 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=25.7
Q ss_pred CcccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 034521 26 GKVSFNDILEVLRDLSGSFMSDEQREQVLTQVFKDAGYTRDSY 68 (92)
Q Consensus 26 G~I~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~ 68 (92)
+.++.+|-..+|.- ....+.+++.+-.+++|..-|++..|+
T Consensus 53 ~~Mtl~EA~~ILnv--~~~~~~eeI~k~y~~Lf~~Nd~~kGGS 93 (127)
T PF03656_consen 53 KGMTLDEARQILNV--KEELSREEIQKRYKHLFKANDPSKGGS 93 (127)
T ss_dssp ----HHHHHHHHT----G--SHHHHHHHHHHHHHHT-CCCTS-
T ss_pred CCCCHHHHHHHcCC--CCccCHHHHHHHHHHHHhccCCCcCCC
Confidence 35888888877752 336788899999999999999987775
No 262
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.30 E-value=2.6e+02 Score=18.64 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=30.4
Q ss_pred CCCCcccHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHHHhC
Q 034521 23 DCNGKVSFNDILEVLRDLSG---------------SFMSDEQREQVLTQVFKDAG 62 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~d 62 (92)
+.+|.|+.+.+++.+..+.. ..++.+|..++++.+.+..+
T Consensus 18 ~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~ 72 (296)
T TIGR03249 18 DADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK 72 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC
Confidence 45689999999888775532 26789999999977777654
No 263
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=21.22 E-value=2.7e+02 Score=18.78 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 42 GSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
|..++++++.+.++..+..+-.. +..+.+.|.+.+...|.
T Consensus 107 gi~vsd~ei~~~i~~~~~~~~~~--~~~~~~~~~~~L~~~g~ 146 (336)
T PRK00059 107 KLIPSEEELNKEVDKKINEIKKQ--FNNDEEQFEEALKATGF 146 (336)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHcCC
Confidence 67788888776665443444222 24566666666655443
No 264
>PLN02554 UDP-glycosyltransferase family protein
Probab=21.19 E-value=2.5e+02 Score=20.36 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 034521 25 NGKVSFNDILEVLRDLSGSFMS-DEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
.+.++.+++.++++.++...-. ...+.++-+.+-+.....|...-++++|++-+.+
T Consensus 422 ~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 422 METVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred cCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 4578999999999988431100 0112222222222334445555677777776654
No 265
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=21.14 E-value=1.5e+02 Score=19.80 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCcccHHHHHHHHHHhcCCCCCHHHH
Q 034521 24 CNGKVSFNDILEVLRDLSGSFMSDEQR 50 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~~~~~~~~~~ 50 (92)
++|.++.+.|...+.++....++.+|+
T Consensus 196 HT~~l~~~kL~~~l~~l~~G~Lt~eEV 222 (254)
T PF08735_consen 196 HTGMLTPEKLEEYLERLRDGTLTNEEV 222 (254)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCChHHh
Confidence 578899999999888886778887753
No 266
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=20.95 E-value=1.4e+02 Score=15.19 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHh--cCCCCCcccHHHHHHHHHHh
Q 034521 9 LLLFLSVIFKVY--DSDCNGKVSFNDILEVLRDL 40 (92)
Q Consensus 9 ~~~~l~~~F~~~--D~~~~G~I~~~el~~~l~~~ 40 (92)
..+++....++| +. +...++.++++..+...
T Consensus 13 ~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 13 PLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp EHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 356666666666 32 33446666666666543
No 267
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=20.90 E-value=1.1e+02 Score=15.80 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=20.5
Q ss_pred CCCCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 23 DCNGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 23 ~~~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.++..++..++..++....|..++..++.++.
T Consensus 9 ~G~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~ 40 (76)
T PF08479_consen 9 EGNTLLPEEELQAILAPYIGRCLTLADLQQLA 40 (76)
T ss_dssp ES-TSSSCCHHHHHHGGGTTSBB-HHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhcCCCcCHHHHHHHH
Confidence 34556666777777776667777777777666
No 268
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=20.86 E-value=2.7e+02 Score=18.58 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCCcccHHHHHHHHHHhc----------------CCCCCHHHHHHHHHHHHHHh
Q 034521 24 CNGKVSFNDILEVLRDLS----------------GSFMSDEQREQVLTQVFKDA 61 (92)
Q Consensus 24 ~~G~I~~~el~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~ 61 (92)
+++.|+..|+...+..-+ +...+++++++.+..+...+
T Consensus 34 ng~~It~~~~~~~l~~~~g~~~l~~li~~~~~~~~i~vsd~evd~~i~~i~~~~ 87 (285)
T PRK03002 34 TDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEVQKAKSQY 87 (285)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHh
Confidence 456677777655543221 23567777777665554443
No 269
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=20.83 E-value=73 Score=16.76 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=17.3
Q ss_pred CCcccHHHHHHHHHHhcCCCCCHHHHHHHH
Q 034521 25 NGKVSFNDILEVLRDLSGSFMSDEQREQVL 54 (92)
Q Consensus 25 ~G~I~~~el~~~l~~~~~~~~~~~~~~~~~ 54 (92)
.|++|..-+..+++.++ .....+++.+++
T Consensus 47 rgrvskavlvkmlrkly-~~tk~e~vkrml 75 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLY-EATKNEEVKRML 75 (79)
T ss_dssp HS-EEHHHHHHHHHHHH-HHH--HHHHHHH
T ss_pred cCcchHHHHHHHHHHHH-HhhchHHHHHHH
Confidence 47788888888888773 233345666665
No 270
>PRK09989 hypothetical protein; Provisional
Probab=20.77 E-value=1.4e+02 Score=19.30 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=17.2
Q ss_pred CCCcccHHHHHHHHhcCCC
Q 034521 65 RDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 65 ~~g~I~~~ef~~~l~~~~~ 83 (92)
|+|.|++.++.+.+.+.+.
T Consensus 215 G~G~id~~~i~~al~~~Gy 233 (258)
T PRK09989 215 DDGEINYPWLFRLFDEVGY 233 (258)
T ss_pred CCCCcCHHHHHHHHHHcCC
Confidence 6799999999999999876
No 271
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=20.59 E-value=2.9e+02 Score=18.90 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=5.9
Q ss_pred HHHHHHHhcC
Q 034521 72 GDFIKVFGNS 81 (92)
Q Consensus 72 ~ef~~~l~~~ 81 (92)
++|.+-+.+.
T Consensus 158 ~eFl~~v~~~ 167 (335)
T PF11867_consen 158 DEFLEEVKKM 167 (335)
T ss_pred HHHHHHHHhc
Confidence 5676655543
No 272
>smart00708 PhBP Insect pheromone/odorant binding protein domains.
Probab=20.53 E-value=1.5e+02 Score=15.62 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHh
Q 034521 47 DEQREQVLTQVFKDAGY-TRDSYLTLGDFIKVFG 79 (92)
Q Consensus 47 ~~~~~~~~~~~~~~~d~-~~~g~I~~~ef~~~l~ 79 (92)
.....-.+.-++..+.. +.+|.+..+.+...+.
T Consensus 29 ~~~~kC~~~C~~~~~g~~~~~g~~~~~~~~~~~~ 62 (103)
T smart00708 29 DEKVKCYIKCVLKKLGLVDDDGKFDAEKLLEQLK 62 (103)
T ss_pred CcccCcHHHHHHHHcCCcCCCCCcCHHHHHHHHH
Confidence 34455555556665552 3346677666665554
No 273
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=20.32 E-value=2.4e+02 Score=17.88 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCCCC--cccHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 034521 12 FLSVIFKVYDSDCNG--KVSFNDILEVLR-DLSGSFMSDEQREQVLTQVFKDAGYTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 12 ~l~~~F~~~D~~~~G--~I~~~el~~~l~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~ef~~~l~~~~~ 83 (92)
.....+...-. ..| .++.+.|...+. .......+-.....++..++...+ ...|++.||+..+.+.|-
T Consensus 20 ~vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~---~~~iT~~Df~~F~A~FGP 90 (181)
T PF11422_consen 20 NVISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKN---TNVITIPDFYKFLARFGP 90 (181)
T ss_dssp HHHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS----SEEEHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCC---CceeeHHHHHHHHHHhCC
Confidence 33344444333 566 788777655443 222445566666777755544443 458999999999988776
No 274
>PRK10788 periplasmic folding chaperone; Provisional
Probab=20.18 E-value=3.8e+02 Score=20.03 Aligned_cols=42 Identities=24% Similarity=0.437 Sum_probs=30.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcCCC
Q 034521 37 LRDLSGSFMSDEQREQVLTQVFKDAG-YTRDSYLTLGDFIKVFGNSGL 83 (92)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~g~I~~~ef~~~l~~~~~ 83 (92)
...+ |..++++++...+ .... ...+|.++.+.|.+++...+.
T Consensus 105 A~~l-gi~vsd~ev~~~I----~~~p~Fq~~G~Fd~~~y~~~L~~~g~ 147 (623)
T PRK10788 105 AREL-GLGISDEQVKQAI----FATPAFQTDGKFDNNKYLAILNQMGM 147 (623)
T ss_pred HHHc-CCCcCHHHHHHHH----HhCcccccCCCcCHHHHHHHHHHcCC
Confidence 3455 7889999999888 4421 124688899999888877664
No 275
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=20.12 E-value=39 Score=18.45 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHhCCCCCCcccHHHHHHHHhc
Q 034521 59 KDAGYTRDSYLTLGDFIKVFGN 80 (92)
Q Consensus 59 ~~~d~~~~g~I~~~ef~~~l~~ 80 (92)
+.+..+.+..-+|+||.+++++
T Consensus 12 RRFsl~r~~~~~f~ef~~ll~~ 33 (80)
T cd06403 12 RRFSLDRNKPGKFEDFYKLLEH 33 (80)
T ss_pred EEEEeccccCcCHHHHHHHHHH
Confidence 3444455556788888877765
Done!