BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034522
         (92 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LEU3|NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis
           thaliana GN=NOL PE=2 SV=1
          Length = 348

 Score =  145 bits (366), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 77/83 (92%)

Query: 10  PGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTYLRFLTGV 69
           PGMVTTDLLMSGATTKQAKFFINVLAEPA+VVAE LVP IR+I ASGS KPTY+RFLTG+
Sbjct: 266 PGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLVPNIRAIPASGSMKPTYIRFLTGI 325

Query: 70  KAYSQIFSRIAFGARRNRYILED 92
           KAY++IFSR+A GAR+NRY+ E+
Sbjct: 326 KAYTKIFSRVALGARKNRYVTEE 348


>sp|Q84ST4|NOL_ORYSJ Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa
           subsp. japonica GN=NOL PE=1 SV=1
          Length = 343

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 76/83 (91%)

Query: 10  PGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTYLRFLTGV 69
           PGMVTTDLLMSGATTKQAKFFIN+LAEPA+VVA+ LVP IR+I  + S KPTY+RFLTG+
Sbjct: 261 PGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLVPNIRAIPTNQSMKPTYIRFLTGL 320

Query: 70  KAYSQIFSRIAFGARRNRYILED 92
           KAYS+IFSRIAFGARRN+Y+ ED
Sbjct: 321 KAYSRIFSRIAFGARRNKYVAED 343


>sp|Q5N800|NYC1_ORYSJ Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza
           sativa subsp. japonica GN=NYC1 PE=1 SV=1
          Length = 504

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 8/85 (9%)

Query: 8   SKPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASGSTKPTYLRFLT 67
           + PGMV TDLL+SG++ +  + F N++ E  + VA  LVP++R +  SG      + +LT
Sbjct: 367 ASPGMVLTDLLLSGSSLRNKQMF-NLICELPETVARTLVPRMRVVKGSGKA----INYLT 421

Query: 68  GVKAYSQIFSRIAFGARRNRYILED 92
             +    + + +    RR R+  E+
Sbjct: 422 PPRI---LLALVTAWVRRGRWFDEE 443


>sp|Q93ZA0|NYC1_ARATH Probable chlorophyll(ide) b reductase NYC1, chloroplastic
           OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1
          Length = 496

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 8   SKPGMVTTDLLMSGATTKQAKFFINVLAEPADVVAECLVPKIRSIAASG 56
           + PGMV T+LL+SG++ K  + F N++ E  + VA  LVP++R +  SG
Sbjct: 358 ASPGMVLTELLLSGSSIKNKQMF-NIICELPETVARTLVPRMRVVKGSG 405


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,874,881
Number of Sequences: 539616
Number of extensions: 951375
Number of successful extensions: 2053
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2049
Number of HSP's gapped (non-prelim): 4
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)