Query 034523
Match_columns 92
No_of_seqs 108 out of 635
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 1.2E-40 2.6E-45 227.4 9.5 90 1-92 1-103 (104)
2 PLN03220 uncharacterized prote 100.0 2.3E-39 5.1E-44 221.3 9.7 90 1-91 1-102 (105)
3 PLN03219 uncharacterized prote 100.0 6.1E-37 1.3E-41 210.2 9.5 91 1-91 1-104 (108)
4 PF02519 Auxin_inducible: Auxi 100.0 4.5E-36 9.7E-41 202.6 8.2 66 25-92 34-99 (100)
5 PF02214 BTB_2: BTB/POZ domain 82.2 1 2.2E-05 28.5 1.8 54 34-91 3-59 (94)
6 PRK02899 adaptor protein; Prov 82.2 1.2 2.7E-05 33.0 2.5 24 54-78 39-62 (197)
7 smart00666 PB1 PB1 domain. Pho 79.2 6 0.00013 24.2 4.6 43 36-83 8-60 (81)
8 PRK02315 adaptor protein; Prov 74.5 2.5 5.3E-05 32.0 2.1 24 54-78 39-62 (233)
9 PF02100 ODC_AZ: Ornithine dec 70.8 4 8.7E-05 27.7 2.3 45 40-86 23-71 (108)
10 PF05389 MecA: Negative regula 69.7 1.5 3.2E-05 32.4 0.0 24 54-78 39-62 (220)
11 cd06407 PB1_NLP A PB1 domain i 58.9 31 0.00066 22.2 4.7 47 35-86 6-63 (82)
12 cd05992 PB1 The PB1 domain is 53.9 46 0.001 19.9 6.4 51 34-89 5-65 (81)
13 PF02209 VHP: Villin headpiece 53.2 7.9 0.00017 21.8 1.0 19 50-68 1-19 (36)
14 smart00153 VHP Villin headpiec 52.0 9.2 0.0002 21.4 1.2 19 50-68 1-19 (36)
15 PF08861 DUF1828: Domain of un 52.0 31 0.00068 22.0 3.9 39 53-91 44-82 (90)
16 PF11834 DUF3354: Domain of un 47.5 15 0.00033 23.2 1.8 17 54-70 26-42 (69)
17 PF12058 DUF3539: Protein of u 41.3 4.8 0.0001 27.1 -1.3 12 49-60 4-15 (88)
18 cd06396 PB1_NBR1 The PB1 domai 41.1 91 0.002 20.4 4.8 43 40-84 10-60 (81)
19 PF00564 PB1: PB1 domain; Int 38.7 75 0.0016 19.1 4.0 40 40-83 11-61 (84)
20 PRK10308 3-methyl-adenine DNA 37.9 92 0.002 24.1 5.2 62 29-91 45-120 (283)
21 PRK14189 bifunctional 5,10-met 37.6 1.3E+02 0.0029 23.6 6.1 53 27-92 31-85 (285)
22 PRK02797 4-alpha-L-fucosyltran 35.9 1.1E+02 0.0024 24.9 5.4 45 26-70 141-206 (322)
23 PRK14186 bifunctional 5,10-met 30.9 1.8E+02 0.0039 23.1 5.8 54 26-92 30-85 (297)
24 cd06398 PB1_Joka2 The PB1 doma 30.1 1.6E+02 0.0035 19.2 5.5 51 37-88 8-70 (91)
25 PF04089 BRICHOS: BRICHOS doma 29.8 1.4E+02 0.003 18.7 4.2 40 25-65 11-50 (97)
26 PRK14193 bifunctional 5,10-met 29.7 1.8E+02 0.004 22.9 5.7 53 27-92 31-85 (284)
27 PF11822 DUF3342: Domain of un 29.4 65 0.0014 26.1 3.1 47 40-90 12-63 (317)
28 cd06410 PB1_UP2 Uncharacterize 28.0 1.8E+02 0.004 19.2 5.0 52 28-84 12-75 (97)
29 TIGR02529 EutJ ethanolamine ut 27.8 68 0.0015 23.9 2.9 29 55-83 45-73 (239)
30 PF11876 DUF3396: Protein of u 27.7 51 0.0011 24.6 2.2 40 41-80 24-65 (208)
31 PRK13277 5-formaminoimidazole- 27.0 19 0.00042 29.5 -0.2 23 25-47 88-111 (366)
32 PF14317 YcxB: YcxB-like prote 26.1 1.2E+02 0.0027 16.6 3.5 33 26-60 26-58 (62)
33 cd01406 SIR2-like Sir2-like: P 25.8 84 0.0018 22.9 3.0 36 30-72 1-36 (242)
34 PF08948 DUF1859: Domain of un 25.7 27 0.00059 24.5 0.4 29 27-57 85-123 (126)
35 PRK14194 bifunctional 5,10-met 25.4 2.6E+02 0.0057 22.2 5.9 54 26-92 31-86 (301)
36 PRK14188 bifunctional 5,10-met 25.0 2.9E+02 0.0063 21.8 6.1 54 26-92 30-85 (296)
37 PF07429 Glyco_transf_56: 4-al 24.9 1.9E+02 0.0042 23.9 5.1 45 26-70 180-245 (360)
38 cd06536 CIDE_N_ICAD CIDE_N dom 24.4 1.3E+02 0.0029 19.6 3.5 36 40-80 12-47 (80)
39 PRK14166 bifunctional 5,10-met 24.4 2.7E+02 0.0058 22.0 5.7 53 27-92 29-83 (282)
40 PRK14192 bifunctional 5,10-met 24.1 2.8E+02 0.0061 21.5 5.8 53 26-91 31-85 (283)
41 COG1759 5-formaminoimidazole-4 23.4 37 0.00079 28.0 0.8 24 25-48 88-112 (361)
42 PF01584 CheW: CheW-like domai 23.2 91 0.002 19.9 2.5 19 31-52 2-20 (138)
43 PF10087 DUF2325: Uncharacteri 22.8 2.1E+02 0.0046 18.1 4.6 46 41-91 49-95 (97)
44 PF12062 HSNSD: heparan sulfat 22.6 69 0.0015 27.5 2.3 44 25-69 91-141 (487)
45 cd04751 Commd3 COMM_Domain con 22.5 60 0.0013 21.2 1.5 19 74-92 65-83 (95)
46 PRK14167 bifunctional 5,10-met 22.1 3.1E+02 0.0068 21.7 5.8 53 26-91 29-83 (297)
47 PF06544 DUF1115: Protein of u 22.1 2E+02 0.0043 19.4 4.1 27 44-70 2-28 (128)
48 PRK14170 bifunctional 5,10-met 21.8 3.8E+02 0.0081 21.2 6.1 53 26-91 29-83 (284)
49 PF05194 UreE_C: UreE urease a 21.7 1.3E+02 0.0029 18.9 3.0 29 28-63 23-51 (87)
50 PRK14179 bifunctional 5,10-met 21.0 3.6E+02 0.0077 21.3 5.8 53 27-92 31-85 (284)
51 PRK14173 bifunctional 5,10-met 21.0 4.1E+02 0.0088 21.0 6.2 53 27-92 28-82 (287)
52 PF04341 DUF485: Protein of un 20.8 71 0.0015 20.6 1.6 12 51-62 2-13 (91)
53 KOG1748 Acyl carrier protein/N 20.7 49 0.0011 23.6 0.9 27 63-89 97-124 (131)
54 TIGR03793 TOMM_pelo TOMM prope 20.5 1.6E+02 0.0036 18.8 3.3 26 52-78 15-44 (77)
55 PF00651 BTB: BTB/POZ domain; 20.5 2.2E+02 0.0047 17.3 4.5 51 33-90 14-69 (111)
56 PF07369 DUF1488: Protein of u 20.3 1.7E+02 0.0038 18.0 3.3 20 31-51 18-37 (83)
57 PF05041 Pecanex_C: Pecanex pr 20.2 88 0.0019 24.2 2.2 29 7-38 192-220 (232)
58 PRK14169 bifunctional 5,10-met 20.1 3.9E+02 0.0084 21.1 5.8 52 27-91 29-82 (282)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=227.41 Aligned_cols=90 Identities=57% Similarity=0.925 Sum_probs=82.8
Q ss_pred Ccccchh----HHHHHHHHHHhhhhccc---------cCCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhc
Q 034523 1 MAIRFLR----IVNAKQALRRALMVSEA---------STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEF 67 (92)
Q Consensus 1 m~~~~~~----~~~~k~~lkr~~~~~k~---------~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEf 67 (92)
|||++.+ ++++||+||||+|.++. .+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus 1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf 79 (104)
T PLN03090 1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF 79 (104)
T ss_pred CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence 7888664 56899999999998654 47899999999998 8999999999999999999999999999
Q ss_pred CCcCCCCceeeeCCHHHHHHHHhcC
Q 034523 68 GFDHPMGGLTIPCSEKVFMDLTSRL 92 (92)
Q Consensus 68 G~~~~~G~L~iPC~~~~Fe~vl~~L 92 (92)
||+|+ |+|+|||+++.|++++|+|
T Consensus 80 Gf~~~-G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 80 GFDHD-MGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence 99998 8999999999999999986
No 2
>PLN03220 uncharacterized protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=221.27 Aligned_cols=90 Identities=61% Similarity=1.058 Sum_probs=81.3
Q ss_pred CcccchhHHHH-HHHHHHhhhhccc--------cCCCCCeEEEEeecC---cceEEEEEccCCCcHHHHHHHHhHHHhcC
Q 034523 1 MAIRFLRIVNA-KQALRRALMVSEA--------STVPKGHLAVYVGEI---EKSRFVVPVSYLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 1 m~~~~~~~~~~-k~~lkr~~~~~k~--------~~vpkG~~aVyVG~~---~~~RfvVp~~~L~hP~F~~LL~~aeeEfG 68 (92)
||++.++|.+. ||+|+|++ .+++ .+|||||||||||++ +++||+||++|||||.|++||++||||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG 79 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG 79 (105)
T ss_pred CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence 99999999865 99999998 4322 589999999999972 58999999999999999999999999999
Q ss_pred CcCCCCceeeeCCHHHHHHHHhc
Q 034523 69 FDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 69 ~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
|+|++|+|+|||+++.|++++++
T Consensus 80 f~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 80 FNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCCEEeeCCHHHHHHHHHh
Confidence 99966999999999999999874
No 3
>PLN03219 uncharacterized protein; Provisional
Probab=100.00 E-value=6.1e-37 Score=210.23 Aligned_cols=91 Identities=54% Similarity=0.928 Sum_probs=81.2
Q ss_pred CcccchhHHHHHHHHHHhhhhccc------------cCCCCCeEEEEeec-CcceEEEEEccCCCcHHHHHHHHhHHHhc
Q 034523 1 MAIRFLRIVNAKQALRRALMVSEA------------STVPKGHLAVYVGE-IEKSRFVVPVSYLKHPSFQNLLSQAEEEF 67 (92)
Q Consensus 1 m~~~~~~~~~~k~~lkr~~~~~k~------------~~vpkG~~aVyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeeEf 67 (92)
||+....+++.||++|-.+...|+ .+|||||+|||||+ ++++||+||++|||||+|++||++|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf 80 (108)
T PLN03219 1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC 80 (108)
T ss_pred CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence 788888899999998866555432 56999999999998 46999999999999999999999999999
Q ss_pred CCcCCCCceeeeCCHHHHHHHHhc
Q 034523 68 GFDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 68 G~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
||+|++|+|+|||+++.|++++++
T Consensus 81 Gf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 81 GFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCEEEeCCHHHHHHHHHh
Confidence 999866999999999999999974
No 4
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=4.5e-36 Score=202.64 Aligned_cols=66 Identities=70% Similarity=1.112 Sum_probs=64.0
Q ss_pred cCCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhcC
Q 034523 25 STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~L 92 (92)
.++|+||+|||||+ +++||+||++|||||+|++||++|||||||+++ |+|+|||+++.|++++|+|
T Consensus 34 ~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 34 SDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred CCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHh
Confidence 77899999999998 899999999999999999999999999999997 9999999999999999986
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=82.18 E-value=1 Score=28.53 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=39.0
Q ss_pred EEeecCcceEEEEEccCCC-cH--HHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhc
Q 034523 34 VYVGEIEKSRFVVPVSYLK-HP--SFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 34 VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
+=||. ++|.++.+-|. +| .|..+++....... +.++|.+-|-++...|++|+.-
T Consensus 3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~-~~~~~~~fiDRdp~~F~~IL~y 59 (94)
T PF02214_consen 3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDY-DDDDGEYFIDRDPELFEYILNY 59 (94)
T ss_dssp EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGE-ETTTTEEEESS-HHHHHHHHHH
T ss_pred EEECC---EEEEEcHHHHhhCCCChhhhHHhhcccccc-CCccceEEeccChhhhhHHHHH
Confidence 44775 89999998887 54 68888886532222 2234899999999999999864
No 6
>PRK02899 adaptor protein; Provisional
Probab=82.17 E-value=1.2 Score=32.99 Aligned_cols=24 Identities=25% Similarity=0.726 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHhcCCcCCCCceee
Q 034523 54 PSFQNLLSQAEEEFGFDHPMGGLTI 78 (92)
Q Consensus 54 P~F~~LL~~aeeEfG~~~~~G~L~i 78 (92)
-+|.++|++|..|+||.-+ |||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~-~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEAD-GPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccC-CeEEE
Confidence 3577779999999999976 99976
No 7
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=79.23 E-value=6 Score=24.19 Aligned_cols=43 Identities=30% Similarity=0.498 Sum_probs=32.4
Q ss_pred eecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCc----------CCCCceeeeCCHH
Q 034523 36 VGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFD----------HPMGGLTIPCSEK 83 (92)
Q Consensus 36 VG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~ 83 (92)
-|+ +.+||.+|- ...|.+|..+..+.|+.. .++..++|.|+.+
T Consensus 8 ~~~-~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~D 60 (81)
T smart00666 8 YGG-ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDED 60 (81)
T ss_pred ECC-EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHH
Confidence 365 789999986 678999999999998874 2323677888643
No 8
>PRK02315 adaptor protein; Provisional
Probab=74.51 E-value=2.5 Score=32.04 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHhcCCcCCCCceee
Q 034523 54 PSFQNLLSQAEEEFGFDHPMGGLTI 78 (92)
Q Consensus 54 P~F~~LL~~aeeEfG~~~~~G~L~i 78 (92)
-.|.++|++|..|+||..+ |||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~-~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADE-GPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 4699999999999999975 99986
No 9
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=70.79 E-value=4 Score=27.66 Aligned_cols=45 Identities=31% Similarity=0.389 Sum_probs=22.6
Q ss_pred cceEEE-EEccCCCc---HHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHH
Q 034523 40 EKSRFV-VPVSYLKH---PSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFM 86 (92)
Q Consensus 40 ~~~Rfv-Vp~~~L~h---P~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe 86 (92)
++.=|+ +|-+.+.+ ..|.+||+.|||+++.++ -.+.++=+-....
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~ 71 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRA 71 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HH
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHH
Confidence 455566 46544443 559999999999999875 3566653333333
No 10
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=69.66 E-value=1.5 Score=32.40 Aligned_cols=24 Identities=42% Similarity=0.737 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHhcCCcCCCCceee
Q 034523 54 PSFQNLLSQAEEEFGFDHPMGGLTI 78 (92)
Q Consensus 54 P~F~~LL~~aeeEfG~~~~~G~L~i 78 (92)
-.|.++|++|.+|+||..+ |||++
T Consensus 39 ~fF~~ileea~~e~~F~~~-~~l~~ 62 (220)
T PF05389_consen 39 EFFYSILEEADEEHGFEND-GPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHhccccCcccC-CeEEE
Confidence 5699999999999999985 88875
No 11
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=58.86 E-value=31 Score=22.20 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=33.5
Q ss_pred EeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcC-----------CCCceeeeCCHHHHH
Q 034523 35 YVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDH-----------PMGGLTIPCSEKVFM 86 (92)
Q Consensus 35 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~-----------~~G~L~iPC~~~~Fe 86 (92)
..|+ +..||.+|.+. -|++|.++-.+-|+.+. ++...+|.|+.+.=+
T Consensus 6 ~~~~-d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~e 63 (82)
T cd06407 6 TYGE-EKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEE 63 (82)
T ss_pred EeCC-eEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHH
Confidence 3455 78999998754 68888888888887753 334677888876543
No 12
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=53.91 E-value=46 Score=19.93 Aligned_cols=51 Identities=33% Similarity=0.434 Sum_probs=34.9
Q ss_pred EEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCc----------CCCCceeeeCCHHHHHHHH
Q 034523 34 VYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFD----------HPMGGLTIPCSEKVFMDLT 89 (92)
Q Consensus 34 VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~~Fe~vl 89 (92)
++-++ +.+||.+|. +++.|.+|..+-.+.|+.. .++--++|.++ ++++.++
T Consensus 5 ~~~~~-~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~ 65 (81)
T cd05992 5 VKYGG-EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAI 65 (81)
T ss_pred EEecC-CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHH
Confidence 33444 789999998 7888999999988888874 12224566665 4455444
No 13
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=53.18 E-value=7.9 Score=21.76 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHhHHHhcC
Q 034523 50 YLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 50 ~L~hP~F~~LL~~aeeEfG 68 (92)
||+.-.|+++..++.+||.
T Consensus 1 YLsd~dF~~vFgm~~~eF~ 19 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFY 19 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHH
T ss_pred CcCHHHHHHHHCCCHHHHH
Confidence 7899999999999999984
No 14
>smart00153 VHP Villin headpiece domain.
Probab=51.99 E-value=9.2 Score=21.40 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHHhHHHhcC
Q 034523 50 YLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 50 ~L~hP~F~~LL~~aeeEfG 68 (92)
||+.-.|+..+.++.+||-
T Consensus 1 yLsdeeF~~vfgmsr~eF~ 19 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFY 19 (36)
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 7899999999999999974
No 15
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=51.99 E-value=31 Score=21.98 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=33.7
Q ss_pred cHHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhc
Q 034523 53 HPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 53 hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
.+.=+++|+..-..||+.-++|.|.+.++.+.|-....+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~ 82 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHR 82 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHH
Confidence 677789999999999999888999999999988776554
No 16
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=47.47 E-value=15 Score=23.22 Aligned_cols=17 Identities=47% Similarity=0.800 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHhcCCc
Q 034523 54 PSFQNLLSQAEEEFGFD 70 (92)
Q Consensus 54 P~F~~LL~~aeeEfG~~ 70 (92)
-.+++||+.|++.||+.
T Consensus 26 ~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS 42 (69)
T ss_pred ccHHHHHHHHHHHhCCC
Confidence 36999999999999995
No 17
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=41.31 E-value=4.8 Score=27.06 Aligned_cols=12 Identities=50% Similarity=1.004 Sum_probs=8.6
Q ss_pred cCCCcHHHHHHH
Q 034523 49 SYLKHPSFQNLL 60 (92)
Q Consensus 49 ~~L~hP~F~~LL 60 (92)
.|||||.|.-|-
T Consensus 4 ~YLNHPtFGlLy 15 (88)
T PF12058_consen 4 TYLNHPTFGLLY 15 (88)
T ss_dssp -EEEETTTEEEE
T ss_pred ccccCCccchhe
Confidence 589999986553
No 18
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=41.07 E-value=91 Score=20.35 Aligned_cols=43 Identities=16% Similarity=0.343 Sum_probs=32.8
Q ss_pred cceEEEEEccCCCcHHHHHHHHhHHHhcCC--------cCCCCceeeeCCHHH
Q 034523 40 EKSRFVVPVSYLKHPSFQNLLSQAEEEFGF--------DHPMGGLTIPCSEKV 84 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~--------~~~~G~L~iPC~~~~ 84 (92)
+..||.++-+ .++.|.+|..+-+.-|++ |.++-+++|.|+.+.
T Consensus 10 d~~rf~~~~~--~~~~~~~L~~ev~~rf~l~~f~lKYlDde~e~v~lssd~eL 60 (81)
T cd06396 10 ESQSFLVSDS--ENTTWASVEAMVKVSFGLNDIQIKYVDEENEEVSVNSQGEY 60 (81)
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHHHhCCCcceeEEEcCCCCEEEEEchhhH
Confidence 7899998762 245799999999988885 344457899998765
No 19
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=38.73 E-value=75 Score=19.11 Aligned_cols=40 Identities=30% Similarity=0.437 Sum_probs=27.2
Q ss_pred cceE-EEEEccCCCcHHHHHHHHhHHHhcCCc----------CCCCceeeeCCHH
Q 034523 40 EKSR-FVVPVSYLKHPSFQNLLSQAEEEFGFD----------HPMGGLTIPCSEK 83 (92)
Q Consensus 40 ~~~R-fvVp~~~L~hP~F~~LL~~aeeEfG~~----------~~~G~L~iPC~~~ 83 (92)
+.+| +.+| +.+.|.+|..+.++.||.. .++-.++|.++.+
T Consensus 11 ~~~~~~~~~----~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~D 61 (84)
T PF00564_consen 11 DIRRIISLP----SDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDED 61 (84)
T ss_dssp EEEEEEEEC----STSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHH
T ss_pred eeEEEEEcC----CCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHH
Confidence 4455 4444 4579999999999999984 2323577777754
No 20
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=37.93 E-value=92 Score=24.15 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=40.8
Q ss_pred CCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCC--------------CCceeeeCCHHHHHHHHhc
Q 034523 29 KGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHP--------------MGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 29 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~--------------~G~L~iPC~~~~Fe~vl~~ 91 (92)
.|++.|.-.+ +..++.+.++.-.-+....++.....-|+.+.+ .-+|++|...+.||-+++.
T Consensus 45 ~~~~~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~a 120 (283)
T PRK10308 45 RGVVTVIPDI-ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRA 120 (283)
T ss_pred cEEEEEEEcC-CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHH
Confidence 4555555444 455666666654335556677777777777654 2468999999999988764
No 21
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.63 E-value=1.3e+02 Score=23.64 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 27 VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
.+.+...|.||+ +. ..-...+--.++.+|.|++.+ -+.+| ++.+.|+..+..|
T Consensus 31 ~~p~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~l 85 (285)
T PRK14189 31 HQPGLAVILVGD-NP----------ASQVYVRNKVKACEDNGFHSL--KDRYPADLSEAELLARIDEL 85 (285)
T ss_pred CCCeEEEEEeCC-Cc----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 445888899997 21 223456677788899999865 57788 7788888887643
No 22
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=35.91 E-value=1.1e+02 Score=24.86 Aligned_cols=45 Identities=18% Similarity=0.421 Sum_probs=34.1
Q ss_pred CCCCCeEEEEeec-------------------CcceEEEEEccC--CCcHHHHHHHHhHHHhcCCc
Q 034523 26 TVPKGHLAVYVGE-------------------IEKSRFVVPVSY--LKHPSFQNLLSQAEEEFGFD 70 (92)
Q Consensus 26 ~vpkG~~aVyVG~-------------------~~~~RfvVp~~~--L~hP~F~~LL~~aeeEfG~~ 70 (92)
..+++.+++.||. ++.-|+.||.+| =|.--.++..+.+.+-||-+
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~ 206 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAE 206 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcc
Confidence 4577889999985 234599999999 56666777777777888854
No 23
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.85 E-value=1.8e+02 Score=23.12 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=37.3
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
..+.+...|.||+ +. ..-....--.++.|++|++.+ -+.+| ++.+++.+.+..|
T Consensus 30 g~~p~LaiI~vgd-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~l 85 (297)
T PRK14186 30 GRPPGLAVLRVGD-DP----------ASAVYVRNKEKACARVGIASF--GKHLPADTSQAEVEALIAQL 85 (297)
T ss_pred CCCceEEEEEeCC-Ch----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 4455888999997 21 123456667778899999864 56665 7788888877643
No 24
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=30.09 E-value=1.6e+02 Score=19.22 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=34.3
Q ss_pred ecCcceEEEEEccCC-CcHHHHHHHHhHHHhcCCcC-----------CCCceeeeCCHHHHHHH
Q 034523 37 GEIEKSRFVVPVSYL-KHPSFQNLLSQAEEEFGFDH-----------PMGGLTIPCSEKVFMDL 88 (92)
Q Consensus 37 G~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~-----------~~G~L~iPC~~~~Fe~v 88 (92)
|+ +.+||-+|.+-. .+..|..|.++-++-|.... ++.-++|.|+.+.-+-+
T Consensus 8 ~~-~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~ 70 (91)
T cd06398 8 GG-TLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAI 70 (91)
T ss_pred CC-EEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHH
Confidence 55 899999997411 13468888888887777653 22357888887665443
No 25
>PF04089 BRICHOS: BRICHOS domain; InterPro: IPR007084 The BRICHOS family is defined by a 100 amino acid region found in a variety of proteins implicated in dementia, respiratory distress and cancer, including BRI-2, Chondromodulin-I (ChM-I), CA11, and surfactant protein C []. In several cases, the BRICHOS region is located in the propeptide region that is removed after proteolytic processing. This domain could be involved in the complex post-translational processing of these proteins.; PDB: 2YAD_F.
Probab=29.75 E-value=1.4e+02 Score=18.70 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=29.3
Q ss_pred cCCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHH
Q 034523 25 STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEE 65 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aee 65 (92)
.|-.+|+.+..--+ .++-|+.|.+-=.-|..++|.+.+++
T Consensus 11 ~Df~~gl~a~~~~~-~~~Cfi~~m~~~~~~~~~~l~~~~~~ 50 (97)
T PF04089_consen 11 HDFKNGLTAYRDLS-GRRCFIMPMDRSDVPSPQSLLELLEK 50 (97)
T ss_dssp EETTTTEEEEESST-TS-EEEEE--TTB---HHHHHHHHHH
T ss_pred EEcCCCeEEEEECC-CCeEEEEecChhhccChHHHHHHHhh
Confidence 67789988888765 78999999998899999999999876
No 26
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.73 E-value=1.8e+02 Score=22.89 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=37.6
Q ss_pred CCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 27 VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
.+.+...|+||+ +. ..-.....-.++.|+.|++.+ -+.+| ++.++|...+..|
T Consensus 31 ~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~el~~~I~~l 85 (284)
T PRK14193 31 ITPGLGTVLVGD-DP----------GSQAYVRGKHRDCAEVGITSI--RRDLPADATQEELNAVIDEL 85 (284)
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 445888899997 21 113456677788899999864 57778 8888888877643
No 27
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=29.40 E-value=65 Score=26.07 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=35.3
Q ss_pred cceEEEEEccCCCc--HHHHHHHHh---HHHhcCCcCCCCceeeeCCHHHHHHHHh
Q 034523 40 EKSRFVVPVSYLKH--PSFQNLLSQ---AEEEFGFDHPMGGLTIPCSEKVFMDLTS 90 (92)
Q Consensus 40 ~~~RfvVp~~~L~h--P~F~~LL~~---aeeEfG~~~~~G~L~iPC~~~~Fe~vl~ 90 (92)
..+=|..|.+.|-+ .-|++.|.. +.++.. + =.|.+-||+..|++++.
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~---~-idisVhCDv~iF~WLm~ 63 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWE---E-IDISVHCDVHIFEWLMR 63 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCC---C-cceEEecChhHHHHHHH
Confidence 56889999988865 459999965 333322 2 35899999999999875
No 28
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=27.97 E-value=1.8e+02 Score=19.20 Aligned_cols=52 Identities=29% Similarity=0.372 Sum_probs=35.0
Q ss_pred CCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCC------------CCceeeeCCHHH
Q 034523 28 PKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHP------------MGGLTIPCSEKV 84 (92)
Q Consensus 28 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~------------~G~L~iPC~~~~ 84 (92)
|.+--.=|||. +.+--.|+-+ . .|.+|..+..+.++..+. ++-+.|.||.+.
T Consensus 12 ~~dg~l~Y~GG-~tr~i~V~r~-~---s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl 75 (97)
T cd06410 12 PPDGQLRYVGG-ETRIVSVDRS-I---SFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDL 75 (97)
T ss_pred CCCCCEEEcCC-ceEEEEEcCC-C---CHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHH
Confidence 34444579997 7888888877 3 567777777777776651 145677787643
No 29
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=27.78 E-value=68 Score=23.87 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHhcCCcCCCCceeeeCCHH
Q 034523 55 SFQNLLSQAEEEFGFDHPMGGLTIPCSEK 83 (92)
Q Consensus 55 ~F~~LL~~aeeEfG~~~~~G~L~iPC~~~ 83 (92)
.++.|.+++|+-.|...++-.+++||...
T Consensus 45 ~l~~l~~~a~~~~g~~~~~vvisVP~~~~ 73 (239)
T TIGR02529 45 IVRRLKDTLEQKLGIELTHAATAIPPGTI 73 (239)
T ss_pred HHHHHHHHHHHHhCCCcCcEEEEECCCCC
Confidence 58889999988888876657799998754
No 30
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=27.73 E-value=51 Score=24.55 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCc-H-HHHHHHHhHHHhcCCcCCCCceeeeC
Q 034523 41 KSRFVVPVSYLKH-P-SFQNLLSQAEEEFGFDHPMGGLTIPC 80 (92)
Q Consensus 41 ~~RfvVp~~~L~h-P-~F~~LL~~aeeEfG~~~~~G~L~iPC 80 (92)
-=+|.+|++||.. | .|++|+....+++...|--+++.+-.
T Consensus 24 ~l~f~~P~~~l~~~~~~~~~l~~~~a~~L~~~~G~aGl~~~~ 65 (208)
T PF11876_consen 24 YLSFSLPLEWLEEGPGHFRALFLELAERLPPSHGYAGLAFNL 65 (208)
T ss_pred EEEEEeCHHHHhcCcHHHHHHHHHHHHHCCCCeEeeEEEEec
Confidence 4689999999987 2 49999999999887776556666543
No 31
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=26.96 E-value=19 Score=29.49 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=17.9
Q ss_pred cCCCCCeEEEEeecCcce-EEEEE
Q 034523 25 STVPKGHLAVYVGEIEKS-RFVVP 47 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~-RfvVp 47 (92)
--+|.|.|++|||-+.-. .|.||
T Consensus 88 i~iPh~sf~~y~g~~~ie~~~~vp 111 (366)
T PRK13277 88 IFVPNRSFAVYVGYDAIENEFKVP 111 (366)
T ss_pred EEecCCCeEEEecHHHHhhcCCCC
Confidence 558999999999973333 68888
No 32
>PF14317 YcxB: YcxB-like protein
Probab=26.09 E-value=1.2e+02 Score=16.58 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHH
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL 60 (92)
..-+.++-+|++. ..-+.||-+.++.-...++.
T Consensus 26 ~e~~~~~~l~~~~--~~~~~iPk~~f~~~e~~~f~ 58 (62)
T PF14317_consen 26 VETKDYFYLYLGK--NQAFIIPKRAFSEEEKEEFR 58 (62)
T ss_pred EEeCCEEEEEECC--CeEEEEEHHHCCHhHHHHHH
Confidence 3457788889984 69999999999854444444
No 33
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=25.80 E-value=84 Score=22.93 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=28.1
Q ss_pred CeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCC
Q 034523 30 GHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHP 72 (92)
Q Consensus 30 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~ 72 (92)
|.+++.||.|-..+ .+-|...+|++...++++.+.+
T Consensus 1 g~lvlFiGAG~S~~-------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGAGVSVS-------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecCccccc-------cCCCChHHHHHHHHHHcCCccc
Confidence 67899999752232 4779999999999999987653
No 34
>PF08948 DUF1859: Domain of unknown function (DUF1859); InterPro: IPR015043 This entry is represented by Bacteriophage PRD1, P5. This protein has no known function though it is sometimes found in the N terminus of bacteriophage spike proteins []. ; PDB: 1W8X_N.
Probab=25.67 E-value=27 Score=24.55 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=7.9
Q ss_pred CCCCeEEEEeecCcceEEE----------EEccCCCcHHHH
Q 034523 27 VPKGHLAVYVGEIEKSRFV----------VPVSYLKHPSFQ 57 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~Rfv----------Vp~~~L~hP~F~ 57 (92)
-..||+|+.|-. +-+|+ +|+-+||.|.-+
T Consensus 85 G~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T PF08948_consen 85 GKQGYFPLLVPG--RAKFVVRHTGSGKKSVPMFFLNFTIAQ 123 (126)
T ss_dssp ---SS--EEE----SSSSEEEEEEEESS----S--------
T ss_pred CCcccceeeccc--hhhhhhhhccCCCcceeeEEEeceeee
Confidence 358999999953 44444 688888887643
No 35
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.42 E-value=2.6e+02 Score=22.20 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=37.3
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
..+.+...+.||+ +. ..-.....-.++.|+.|.... .+.+| ++.+++...+..|
T Consensus 31 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 31 GIEPALAVILVGN-DP----------ASQVYVRNKILRAEEAGIRSL--EHRLPADTSQARLLALIAEL 86 (301)
T ss_pred CCCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 3455888999997 21 112355667778899999864 57777 7788888777543
No 36
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.02 E-value=2.9e+02 Score=21.79 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=37.3
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
..+.+...|.||+ +. ..-...+--.++.|+.|++.+ -+.+| ++.+++...+..|
T Consensus 30 g~~p~La~i~vg~-~~----------~s~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~i~~l 85 (296)
T PRK14188 30 GVTPGLAVVLVGE-DP----------ASQVYVRSKGKQTKEAGMASF--EHKLPADTSQAELLALIARL 85 (296)
T ss_pred CCCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 4455888999997 21 112355667778899999864 46666 8888888877643
No 37
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=24.94 E-value=1.9e+02 Score=23.88 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=35.0
Q ss_pred CCCCCeEEEEeec-------------------CcceEEEEEccCC--CcHHHHHHHHhHHHhcCCc
Q 034523 26 TVPKGHLAVYVGE-------------------IEKSRFVVPVSYL--KHPSFQNLLSQAEEEFGFD 70 (92)
Q Consensus 26 ~vpkG~~aVyVG~-------------------~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~ 70 (92)
..+++-.++.||. ++..|..||.+|= |.--.+++.+.+++-||-+
T Consensus 180 ~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~ 245 (360)
T PF07429_consen 180 KKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAE 245 (360)
T ss_pred cCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCcc
Confidence 3457888999984 2468999999996 4567888888888888854
No 38
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=24.38 E-value=1.3e+02 Score=19.61 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=25.0
Q ss_pred cceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeeeC
Q 034523 40 EKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPC 80 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iPC 80 (92)
..+||=|=++ .+++|+.++.+-|....++++++|=+
T Consensus 12 r~~k~GV~A~-----sL~eL~~K~~~~l~l~~~~~~~~lvL 47 (80)
T cd06536 12 RQKQHGVAAS-----SLEELRIKACESLGFDSSSAPITLVL 47 (80)
T ss_pred CCeeEeEEcC-----CHHHHHHHHHHHhCCCCCCCceEEEE
Confidence 3455655554 46899999999999985534566544
No 39
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.36 E-value=2.7e+02 Score=21.96 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 27 VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
+..+...|.||+ +. ..-....--.++.+++|++.+ .+.+| ++.++|...+..|
T Consensus 29 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14166 29 IESCLAVILVGD-NP----------ASQTYVKSKAKACEECGIKSL--VYHLNENTTQNELLALINTL 83 (282)
T ss_pred CCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 445888899997 21 112355666778889999864 57777 7788888777543
No 40
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.07 E-value=2.8e+02 Score=21.51 Aligned_cols=53 Identities=9% Similarity=0.196 Sum_probs=35.7
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceee--eCCHHHHHHHHhc
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTI--PCSEKVFMDLTSR 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~i--PC~~~~Fe~vl~~ 91 (92)
..+.+...|.||+ +. ..-.....-.++.++.|.+.. -+.+ .|+.+.|+.++..
T Consensus 31 ~~~p~L~~i~vg~-~~----------~s~~Y~~~~~~~~~~~Gi~~~--~~~l~~~~~~~~l~~~i~~ 85 (283)
T PRK14192 31 GRTPILATILVGD-DP----------ASATYVRMKGNACRRVGMDSL--KVELPQETTTEQLLAKIEE 85 (283)
T ss_pred CCCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCeEE--EEECCCCCCHHHHHHHHHH
Confidence 3445888999997 21 123456677778888888754 4666 4777788877764
No 41
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=23.36 E-value=37 Score=28.02 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=17.7
Q ss_pred cCCCCCeEEEEeecC-cceEEEEEc
Q 034523 25 STVPKGHLAVYVGEI-EKSRFVVPV 48 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~-~~~RfvVp~ 48 (92)
--+|.|.|++|||-+ --..|.||+
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~ 112 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPM 112 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcc
Confidence 568999999999962 235577764
No 42
>PF01584 CheW: CheW-like domain; InterPro: IPR002545 CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flagellar rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA [] binds to CheW, suggesting that these domains can interact with each other.; GO: 0004871 signal transducer activity, 0006935 chemotaxis, 0007165 signal transduction, 0005622 intracellular; PDB: 2HO9_A 2CH4_A 1B3Q_A 3UR1_A 1K0S_A 2QDL_B.
Probab=23.22 E-value=91 Score=19.85 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=14.2
Q ss_pred eEEEEeecCcceEEEEEccCCC
Q 034523 31 HLAVYVGEIEKSRFVVPVSYLK 52 (92)
Q Consensus 31 ~~aVyVG~~~~~RfvVp~~~L~ 52 (92)
++.+++|+ +||.+|++++.
T Consensus 2 ~l~f~~g~---~~~aip~~~V~ 20 (138)
T PF01584_consen 2 YLLFRLGG---ERFAIPLSDVV 20 (138)
T ss_dssp EEEEEETT---EEEEEEGGGEE
T ss_pred EEEEEECC---EEEEEEHHHee
Confidence 45677776 77999998764
No 43
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.81 E-value=2.1e+02 Score=18.08 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=31.7
Q ss_pred ceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee-CCHHHHHHHHhc
Q 034523 41 KSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP-CSEKVFMDLTSR 91 (92)
Q Consensus 41 ~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP-C~~~~Fe~vl~~ 91 (92)
..-.+|+++|.||-.....-+.|.+ +|.+ .+... +....|+..+..
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk-~~ip----~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKK-YGIP----IIYSRSRGVSSLERALER 95 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHH-cCCc----EEEECCCCHHHHHHHHHh
Confidence 4667899999999988776665554 4432 23334 678888887765
No 44
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=22.62 E-value=69 Score=27.45 Aligned_cols=44 Identities=30% Similarity=0.521 Sum_probs=37.6
Q ss_pred cCCC-CCeEEEEeecCcceEEEEEc-----cCCCcHH-HHHHHHhHHHhcCC
Q 034523 25 STVP-KGHLAVYVGEIEKSRFVVPV-----SYLKHPS-FQNLLSQAEEEFGF 69 (92)
Q Consensus 25 ~~vp-kG~~aVyVG~~~~~RfvVp~-----~~L~hP~-F~~LL~~aeeEfG~ 69 (92)
.-+| ||.+|+++-. ++.||.|-+ .|+|-+. -++||++=-.|||.
T Consensus 91 ei~~~kg~lP~LT~~-~kGRy~lII~ENl~kYlnld~wNR~LLdkYC~ey~V 141 (487)
T PF12062_consen 91 EIASGKGDLPVLTDN-DKGRYSLIIFENLLKYLNLDSWNRELLDKYCREYGV 141 (487)
T ss_pred EEccCCCCCCccccC-CCCcEEEEEehhHHHHcCChHHHHHHHHHHhHccCc
Confidence 4455 6899999976 789999987 8999998 89999998888875
No 45
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=22.50 E-value=60 Score=21.22 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=16.8
Q ss_pred CceeeeCCHHHHHHHHhcC
Q 034523 74 GGLTIPCSEKVFMDLTSRL 92 (92)
Q Consensus 74 G~L~iPC~~~~Fe~vl~~L 92 (92)
..+.+-|+++.|.++++.|
T Consensus 65 ~~i~f~c~~e~L~~Li~~L 83 (95)
T cd04751 65 PDINFTCTLEQLQDLVNKL 83 (95)
T ss_pred ceEEEEeCHHHHHHHHHHH
Confidence 4799999999999998764
No 46
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.13 E-value=3.1e+02 Score=21.73 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=36.0
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhc
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSR 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~ 91 (92)
..+.+...|.||+ +. ..-....--.++.++.|++.+ -+.+| ++.+++...+..
T Consensus 29 g~~P~LaiI~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 83 (297)
T PRK14167 29 GVTPGLATVLMSD-DP----------ASETYVSMKQRDCEEVGIEAI--DVEIDPDAPAEELYDTIDE 83 (297)
T ss_pred CCCceEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 3445888899997 21 123455666778889998864 56777 667778777654
No 47
>PF06544 DUF1115: Protein of unknown function (DUF1115); InterPro: IPR010541 This entry represents the C terminus of several eukaryotic RWD domain-containing proteins of unknown function.
Probab=22.06 E-value=2e+02 Score=19.38 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=22.8
Q ss_pred EEEEccCCCcHHHHHHHHhHHHhcCCc
Q 034523 44 FVVPVSYLKHPSFQNLLSQAEEEFGFD 70 (92)
Q Consensus 44 fvVp~~~L~hP~F~~LL~~aeeEfG~~ 70 (92)
++..+..|+||.-+.-++.-++|++..
T Consensus 2 ~~~~I~~L~~p~~R~kI~~nA~ql~Lt 28 (128)
T PF06544_consen 2 YVHHIKSLSNPKKRFKIDKNAKQLHLT 28 (128)
T ss_pred EEEEeCcccCHHHHHHHHHHHHHhCCe
Confidence 355678899999999999999998874
No 48
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.76 E-value=3.8e+02 Score=21.19 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=36.1
Q ss_pred CCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhc
Q 034523 26 TVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSR 91 (92)
Q Consensus 26 ~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~ 91 (92)
..+.+...+.||+ +. ..-....--.++.+++|.+.+ -+.+| ++.+++...+..
T Consensus 29 g~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 83 (284)
T PRK14170 29 GKKPGLAVVLVGD-NQ----------ASRTYVRNKQKRTEEAGMKSV--LIELPENVTEEKLLSVVEE 83 (284)
T ss_pred CCCCeEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 3455889999997 21 113456667778889998864 56777 667777776654
No 49
>PF05194 UreE_C: UreE urease accessory protein, C-terminal domain; InterPro: IPR007864 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The C-terminal domain of this protein is the metal-binding region, which can bind up to six Ni molecules per dimer. Most members of this group contain a histidine-rich C-terminal motif that is involved in, but not solely responsible for, binding nickel ions in K. aerogenes UreE []. However, internal ligands, not the histidine residues at the C terminus, are necessary for UreE to assist in urease activation in K. aerogenes [], even though the truncated protein lacking the His-rich region binds two nickel ions instead of six. In H. pylori and some other organisms, the terminal histidine-rich binding sites are absent, but the internal histidine sites are present, and the latter probably function as nickel donors. Deletion analysis shows that this domain alone is sufficient for metal-binding and activation of urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=21.66 E-value=1.3e+02 Score=18.94 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=18.6
Q ss_pred CCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhH
Q 034523 28 PKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQA 63 (92)
Q Consensus 28 pkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~a 63 (92)
-.=|+|+++++ + +..|| ..+.+.+||++-
T Consensus 23 GNrH~p~~i~~-~--~l~v~----~d~~l~~~L~~l 51 (87)
T PF05194_consen 23 GNRHWPLFIEE-D--ELYVP----YDHVLEELLRKL 51 (87)
T ss_dssp HHTT--EEEET-T--EEEEE------HHHHHHHHHT
T ss_pred cCCccceEEcC-C--EEEec----CcHHHHHHHHHC
Confidence 34588999997 3 88888 567778888773
No 50
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.97 E-value=3.6e+02 Score=21.25 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=37.1
Q ss_pred CCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 27 VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
.+.+...|.||+ +. ..-....--.++.|+.|+..+ -+.+| ++.++|...+..|
T Consensus 31 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~~l~~~I~~l 85 (284)
T PRK14179 31 IVPGLVVILVGD-NP----------ASQVYVRNKERSALAAGFKSE--VVRLPETISQEELLDLIERY 85 (284)
T ss_pred CCceEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 344888899997 21 112455666788899999864 67888 7788888877643
No 51
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.96 E-value=4.1e+02 Score=20.99 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhcC
Q 034523 27 VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSRL 92 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~L 92 (92)
...+...|.||+ +. ..-....--.++.|++|++.. -+.+| ++.++|.+.+..|
T Consensus 28 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~~~~~Gi~~~--~~~l~~~~~~~el~~~I~~l 82 (287)
T PRK14173 28 FVPHLRVVRLGE-DP----------ASVSYVRLKDRQAKALGLRSQ--VEVLPESTSQEELLELIARL 82 (287)
T ss_pred CCCcEEEEEeCC-CH----------HHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHHH
Confidence 334788999997 21 112355666778899999864 67887 7788888877643
No 52
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=20.78 E-value=71 Score=20.63 Aligned_cols=12 Identities=42% Similarity=0.888 Sum_probs=10.4
Q ss_pred CCcHHHHHHHHh
Q 034523 51 LKHPSFQNLLSQ 62 (92)
Q Consensus 51 L~hP~F~~LL~~ 62 (92)
++||.|++|.++
T Consensus 2 ~~~p~f~~L~r~ 13 (91)
T PF04341_consen 2 LRSPEFQELVRR 13 (91)
T ss_pred CCCHHHHHHHHH
Confidence 589999999876
No 53
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.74 E-value=49 Score=23.65 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHHhcCCcCCCC-ceeeeCCHHHHHHHH
Q 034523 63 AEEEFGFDHPMG-GLTIPCSEKVFMDLT 89 (92)
Q Consensus 63 aeeEfG~~~~~G-~L~iPC~~~~Fe~vl 89 (92)
-||||||+.+++ .=.|-|-.+.++++-
T Consensus 97 lEEEFgiEIpd~dAdki~t~~da~~yI~ 124 (131)
T KOG1748|consen 97 LEEEFGIEIPDEDADKIKTVRDAADYIA 124 (131)
T ss_pred hHHHhCCccCcchhhhhCCHHHHHHHHH
Confidence 389999986542 234555555555554
No 54
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=20.54 E-value=1.6e+02 Score=18.77 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=17.1
Q ss_pred CcHHHHHHH----HhHHHhcCCcCCCCceee
Q 034523 52 KHPSFQNLL----SQAEEEFGFDHPMGGLTI 78 (92)
Q Consensus 52 ~hP~F~~LL----~~aeeEfG~~~~~G~L~i 78 (92)
..|.|++.| +.+=+||||+-+ ..+.|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P-~~~~i 44 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVP-AEVEV 44 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCC-CceEE
Confidence 468899855 334567899876 44443
No 55
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=20.47 E-value=2.2e+02 Score=17.34 Aligned_cols=51 Identities=25% Similarity=0.520 Sum_probs=33.4
Q ss_pred EEEeecCcceEEEEEccCC--CcHHHHHHHHhHHHhcCCcCCCC--ceeee-CCHHHHHHHHh
Q 034523 33 AVYVGEIEKSRFVVPVSYL--KHPSFQNLLSQAEEEFGFDHPMG--GLTIP-CSEKVFMDLTS 90 (92)
Q Consensus 33 aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G--~L~iP-C~~~~Fe~vl~ 90 (92)
.+.|| +.++|-+.-..| ..|.|+.+++.. +.... + .+.++ |+.+.|+.++.
T Consensus 14 ~i~v~--d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~-~~~~i~~~~~~~~~~~~~l~ 69 (111)
T PF00651_consen 14 TIRVG--DGKTFYVHKNILAARSPYFRNLFEGS----KFKES-TVPEISLPDVSPEAFEAFLE 69 (111)
T ss_dssp EEEET--TTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTS-SEEEEEETTSCHHHHHHHHH
T ss_pred EEEEC--CCEEEeechhhhhccchhhhhccccc----ccccc-cccccccccccccccccccc
Confidence 44555 257888887777 458999999888 11112 3 35555 88889988875
No 56
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=20.27 E-value=1.7e+02 Score=17.98 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.9
Q ss_pred eEEEEeecCcceEEEEEccCC
Q 034523 31 HLAVYVGEIEKSRFVVPVSYL 51 (92)
Q Consensus 31 ~~aVyVG~~~~~RfvVp~~~L 51 (92)
.|+++|+. ..-++.|..+-|
T Consensus 18 ~F~a~~~g-~~i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDG-MQIRCAISAEAL 37 (83)
T ss_dssp EEEEEETT-EEEEEEEEHHHH
T ss_pred EEEEEECC-EEEEEEEeHHHH
Confidence 57888886 889999999887
No 57
>PF05041 Pecanex_C: Pecanex protein (C-terminus); InterPro: IPR007735 This family consists of pecanex protein homologues. The pecanex protein is a maternal-effect neurogenic gene found in Drosophila [].; GO: 0016021 integral to membrane
Probab=20.24 E-value=88 Score=24.17 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhhhccccCCCCCeEEEEeec
Q 034523 7 RIVNAKQALRRALMVSEASTVPKGHLAVYVGE 38 (92)
Q Consensus 7 ~~~~~k~~lkr~~~~~k~~~vpkG~~aVyVG~ 38 (92)
+|...+++||..-. ...+.|=|| |+||..
T Consensus 192 SIQ~~~~~LRNl~~--qs~d~PlGY-PiYvSP 220 (232)
T PF05041_consen 192 SIQNHKQLLRNLIN--QSADPPLGY-PIYVSP 220 (232)
T ss_pred cccchHHHHHHHHH--hhccCCCCc-ceEecc
Confidence 45555555553322 238999999 999985
No 58
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.07 E-value=3.9e+02 Score=21.06 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=35.4
Q ss_pred CCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHhc
Q 034523 27 VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTSR 91 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~~ 91 (92)
.+.+...|.||+ +. ..-...+--.++.+++|+..+ -+.+| ++.++|...+..
T Consensus 29 ~~P~Laii~vg~-d~----------as~~Yv~~k~k~a~~~Gi~~~--~~~l~~~~~~~el~~~I~~ 82 (282)
T PRK14169 29 VTPTLAVVLVGS-DP----------ASEVYVRNKQRRAEDIGVRSL--MFRLPEATTQADLLAKVAE 82 (282)
T ss_pred CCCeEEEEEeCC-Ch----------hHHHHHHHHHHHHHHcCCEEE--EEECCCCCCHHHHHHHHHH
Confidence 444788899997 21 112345666778889998864 56777 777888877654
Done!