Query 034523
Match_columns 92
No_of_seqs 108 out of 635
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1und_A Advillin, P92; actin bi 64.4 2.4 8.3E-05 23.2 1.0 20 49-68 1-20 (37)
2 1y74_B MLIN-2/CASK, peripheral 55.7 4.4 0.00015 22.7 1.1 20 49-68 26-49 (50)
3 2al3_A TUG long isoform; TUG U 47.2 24 0.00081 22.6 3.7 35 40-76 18-52 (90)
4 3drz_A BTB/POZ domain-containi 44.0 42 0.0015 21.0 4.6 58 29-91 5-67 (107)
5 2xko_C PIPX, global nitrogen r 43.1 2.9 9.8E-05 27.2 -1.2 12 49-60 5-16 (89)
6 1s1g_A Potassium voltage-gated 42.9 12 0.00041 24.7 1.8 59 28-91 11-70 (124)
7 1yu8_X Villin; alpha helix, 3- 40.8 9.2 0.00032 23.3 0.9 20 49-68 31-50 (67)
8 1qzp_A Dematin; villin headpie 38.4 8.1 0.00028 23.5 0.4 20 49-68 32-51 (68)
9 2vpk_A Myoneurin; transcriptio 36.9 41 0.0014 20.4 3.6 48 32-90 25-77 (116)
10 2k6m_S Supervillin; SVHP, HP, 36.4 10 0.00035 23.1 0.6 20 49-68 31-50 (67)
11 1ujs_A Actin-binding LIM prote 35.6 13 0.00043 23.9 1.0 20 49-68 46-65 (88)
12 2nz0_B Potassium voltage-gated 35.1 16 0.00055 24.6 1.5 59 28-91 33-92 (140)
13 1r29_A B-cell lymphoma 6 prote 31.5 45 0.0015 20.6 3.2 51 32-90 32-86 (127)
14 2vkp_A BTB/POZ domain-containi 31.2 67 0.0023 19.0 3.9 54 32-90 11-68 (109)
15 1y6i_A Mg-chelatase cofactor G 30.3 3.3 0.00011 30.9 -2.8 30 25-57 200-229 (233)
16 3n5b_B ASR0485 protein; PII, P 29.9 6.4 0.00022 26.5 -1.2 13 49-61 28-40 (112)
17 1nn7_A Potassium channel KV4.2 29.9 7.7 0.00027 24.7 -0.8 55 32-91 2-57 (105)
18 2bkf_A Zinc-finger protein NBR 28.9 1E+02 0.0035 19.5 4.5 46 40-87 16-69 (87)
19 3ga1_A Nucleus accumbens-assoc 28.2 77 0.0026 19.6 3.9 48 32-90 36-87 (129)
20 1wy3_A Villin; structural prot 26.8 22 0.00076 19.0 0.9 17 51-67 1-17 (35)
21 1z3x_A Putative cytidyltransfe 25.4 2.4 8.4E-05 31.7 -4.3 29 25-56 208-236 (238)
22 2if5_A Zinc finger and BTB dom 24.7 1E+02 0.0036 18.5 4.0 52 32-90 28-82 (120)
23 1vd2_A Protein kinase C, IOTA 24.5 1.2E+02 0.004 19.1 4.2 28 40-71 16-43 (89)
24 1w8x_N Protein P31, protein C, 23.8 18 0.00062 24.4 0.2 29 27-57 85-123 (126)
25 1zav_U 50S ribosomal protein L 23.3 48 0.0016 17.0 1.8 13 56-68 18-30 (30)
26 3pmi_A PWWP domain-containing 22.9 28 0.00094 24.1 1.0 29 40-68 47-78 (134)
27 1wj6_A KIAA0049 protein, RSGI 22.9 1.4E+02 0.0049 19.4 4.4 49 35-87 21-77 (101)
28 3qli_A Coenzyme A transferase; 22.5 48 0.0016 26.6 2.4 43 26-69 403-454 (455)
29 3ezo_A Malonyl COA-acyl carrie 20.9 59 0.002 23.9 2.5 40 30-70 10-49 (318)
30 2ccq_A P97, peptide N-glycanas 20.5 62 0.0021 20.5 2.3 38 51-88 46-91 (99)
31 2lmc_A Bacterial RNA polymeras 20.3 58 0.002 20.7 2.0 37 29-70 34-70 (84)
No 1
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=64.42 E-value=2.4 Score=23.19 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.5
Q ss_pred cCCCcHHHHHHHHhHHHhcC
Q 034523 49 SYLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999973
No 2
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=55.70 E-value=4.4 Score=22.71 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=15.4
Q ss_pred cCCCcHHHHHHHHh----HHHhcC
Q 034523 49 SYLKHPSFQNLLSQ----AEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~----aeeEfG 68 (92)
..|+.|.|++||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46888999999974 566664
No 3
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=47.22 E-value=24 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=27.3
Q ss_pred cceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCce
Q 034523 40 EKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGL 76 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L 76 (92)
..+|+.|++ -..-.+.++|++|=+.||++.+...|
T Consensus 18 n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 18 NGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp TSCEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred CCcEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 568999988 34446889999999999998664444
No 4
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=43.97 E-value=42 Score=20.98 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=40.8
Q ss_pred CCeEEEEeecCcceEEEEEccCCC-cH--HHHHHHHhHHHhcC--CcCCCCceeeeCCHHHHHHHHhc
Q 034523 29 KGHLAVYVGEIEKSRFVVPVSYLK-HP--SFQNLLSQAEEEFG--FDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 29 kG~~aVyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
...+.+-||. ++|.+..+-|. +| .|..|.... .++. .+. +|.+-|-.+...|++||.-
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~-~~~~fiDRdp~~F~~IL~~ 67 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDE-TGAYLIDRDPTYFGPVLNY 67 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCT-TSCEEECSCHHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCC-CceEEecCChHHHHHHHHH
Confidence 4567888996 89999987775 34 566664321 1232 333 4889999999999999863
No 5
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=43.10 E-value=2.9 Score=27.22 Aligned_cols=12 Identities=50% Similarity=0.988 Sum_probs=9.3
Q ss_pred cCCCcHHHHHHH
Q 034523 49 SYLKHPSFQNLL 60 (92)
Q Consensus 49 ~~L~hP~F~~LL 60 (92)
.|||||.|.-|-
T Consensus 5 ~YLNHPtFGlLy 16 (89)
T 2xko_C 5 NYLNHPTFGLLY 16 (89)
T ss_dssp CEEEETTTEEEE
T ss_pred ccccCCccchhh
Confidence 599999986553
No 6
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=42.86 E-value=12 Score=24.71 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=41.9
Q ss_pred CCCeEEEEeecCcceEEEEEccCCC-cHHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhc
Q 034523 28 PKGHLAVYVGEIEKSRFVVPVSYLK-HPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 28 pkG~~aVyVG~~~~~RfvVp~~~L~-hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
....+.+-||. +||.+..+-|. +|- .+|..++...-++.++|.+-|-.+...|+.||+-
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnf 70 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNF 70 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHH
Confidence 45678888996 99999887663 332 2344444444455556899999999999999874
No 7
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=40.85 E-value=9.2 Score=23.34 Aligned_cols=20 Identities=15% Similarity=0.389 Sum_probs=18.5
Q ss_pred cCCCcHHHHHHHHhHHHhcC
Q 034523 49 SYLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.|+.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 8
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=38.45 E-value=8.1 Score=23.54 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.4
Q ss_pred cCCCcHHHHHHHHhHHHhcC
Q 034523 49 SYLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.|+.+||-
T Consensus 32 ~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHHH
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 9
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=36.90 E-value=41 Score=20.43 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=34.9
Q ss_pred EEEEeecCcceEEEEEccCC--CcHHHHHHHHhHHHhcCCcCCCCceeee---CCHHHHHHHHh
Q 034523 32 LAVYVGEIEKSRFVVPVSYL--KHPSFQNLLSQAEEEFGFDHPMGGLTIP---CSEKVFMDLTS 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~iP---C~~~~Fe~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++.
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~ 77 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLE 77 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHH
Confidence 3456664 6777776666 578999998765 2 2 578888 78899998875
No 10
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=36.38 E-value=10 Score=23.09 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=18.7
Q ss_pred cCCCcHHHHHHHHhHHHhcC
Q 034523 49 SYLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 11
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=35.60 E-value=13 Score=23.91 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=18.6
Q ss_pred cCCCcHHHHHHHHhHHHhcC
Q 034523 49 SYLKHPSFQNLLSQAEEEFG 68 (92)
Q Consensus 49 ~~L~hP~F~~LL~~aeeEfG 68 (92)
.||+.-.|++++.|+.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 12
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=35.09 E-value=16 Score=24.63 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCCeEEEEeecCcceEEEEEccCC-CcHHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhc
Q 034523 28 PKGHLAVYVGEIEKSRFVVPVSYL-KHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 28 pkG~~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
....+.+-||. +||.+..+-| ++|. .+|..++...-++.++|.+-|-.|...|++||+-
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnf 92 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNF 92 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHH
Confidence 45788888996 8999988765 3332 2444454444455556899999999999999874
No 13
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=31.50 E-value=45 Score=20.56 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=36.9
Q ss_pred EEEEeecCcceEEEEEccCC--CcHHHHHHHHhHHHhcCCcCCCCceee-e-CCHHHHHHHHh
Q 034523 32 LAVYVGEIEKSRFVVPVSYL--KHPSFQNLLSQAEEEFGFDHPMGGLTI-P-CSEKVFMDLTS 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~i-P-C~~~~Fe~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..|.| + .+.+.|+.++.
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~ 86 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLD 86 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHH
Confidence 4455664 6777776666 679999999876555 23 68999 4 68889998875
No 14
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=31.19 E-value=67 Score=18.99 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=35.6
Q ss_pred EEEEeec-CcceEEEEEccCC--CcHHHHHHHHhHHHhcCCcCCCCceeee-CCHHHHHHHHh
Q 034523 32 LAVYVGE-IEKSRFVVPVSYL--KHPSFQNLLSQAEEEFGFDHPMGGLTIP-CSEKVFMDLTS 90 (92)
Q Consensus 32 ~aVyVG~-~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~iP-C~~~~Fe~vl~ 90 (92)
+.+.||+ ++.++|-+.-..| ..|.|++++...-.|-. ..|.|| .+.+.|+.++.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~ 68 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLK 68 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHH
Confidence 4556664 2357888888777 58999999975433321 468887 68889998875
No 15
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=30.30 E-value=3.3 Score=30.87 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=19.8
Q ss_pred cCCCCCeEEEEeecCcceEEEEEccCCCcHHHH
Q 034523 25 STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQ 57 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~ 57 (92)
...|+||+|..-.- ..-| +=-+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l-rG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL-RGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT-TCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc-chHH--HHHHHHCCcccc
Confidence 56899999986522 1111 445788888874
No 16
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=29.89 E-value=6.4 Score=26.52 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=9.7
Q ss_pred cCCCcHHHHHHHH
Q 034523 49 SYLKHPSFQNLLS 61 (92)
Q Consensus 49 ~~L~hP~F~~LL~ 61 (92)
.|||||.|.-|-.
T Consensus 28 ~YLNHPTFGLLyr 40 (112)
T 3n5b_B 28 TYINHPTWGLLYR 40 (112)
T ss_dssp CEEEETTTEEEEE
T ss_pred hhccCCccchhee
Confidence 3999999865543
No 17
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=29.88 E-value=7.7 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=34.3
Q ss_pred EEEEeecCcceEEEEEccCC-CcHHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhc
Q 034523 32 LAVYVGEIEKSRFVVPVSYL-KHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR 91 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~ 91 (92)
+.+-||. ++|.+..+-| ++|- .+|..++...-++.++|.+-|-.+...|++||+-
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnf 57 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNF 57 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHH
Confidence 3456775 7888876654 2331 1233333333344445889999999999999863
No 18
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=28.89 E-value=1e+02 Score=19.55 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=34.6
Q ss_pred cceEEEEEccCCCcHHHHHHHHhHHHhcCC--------cCCCCceeeeCCHHHHHH
Q 034523 40 EKSRFVVPVSYLKHPSFQNLLSQAEEEFGF--------DHPMGGLTIPCSEKVFMD 87 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~--------~~~~G~L~iPC~~~~Fe~ 87 (92)
+.+||. ++++..|.+.+|-.+-..-||+ |.+|-.++|.-+.+..|-
T Consensus 16 e~~rf~--vs~~~~~tweel~~mvk~~f~L~~~~ikY~DEenD~v~i~Sq~E~eEA 69 (87)
T 2bkf_A 16 EIQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 69 (87)
T ss_dssp EEEEEE--ESCGGGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHHHHH
T ss_pred CeeEEE--eccCCCCCHHHHHHHHHHHcCCCceEEEEEcCCCCEEEEecHHHHHHH
Confidence 577775 5888999999999999999994 445556888876555443
No 19
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=28.18 E-value=77 Score=19.62 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=35.2
Q ss_pred EEEEeecCcceEEEEEccCCC--cHHHHHHHHhHHHhcCCcCCCCceeee--CCHHHHHHHHh
Q 034523 32 LAVYVGEIEKSRFVVPVSYLK--HPSFQNLLSQAEEEFGFDHPMGGLTIP--CSEKVFMDLTS 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~iP--C~~~~Fe~vl~ 90 (92)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..|.|| .+.+.|+.++.
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~ 87 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILS 87 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHH
Confidence 4666764 66766655554 68899998765 23 689997 88999998875
No 20
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=26.79 E-value=22 Score=19.00 Aligned_cols=17 Identities=18% Similarity=0.473 Sum_probs=14.0
Q ss_pred CCcHHHHHHHHhHHHhc
Q 034523 51 LKHPSFQNLLSQAEEEF 67 (92)
Q Consensus 51 L~hP~F~~LL~~aeeEf 67 (92)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677899999988887
No 21
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=25.40 E-value=2.4 Score=31.73 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=18.8
Q ss_pred cCCCCCeEEEEeecCcceEEEEEccCCCcHHH
Q 034523 25 STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSF 56 (92)
Q Consensus 25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F 56 (92)
...|+||+|..-.- +=.-+=.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~l---rGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQL---RGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCCT---TCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCccc---ccHHHHHHHHcCccc
Confidence 56899999986421 112234567888876
No 22
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=24.66 E-value=1e+02 Score=18.53 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=34.3
Q ss_pred EEEEeecCcceEEEEEccCC--CcHHHHHHHHhHHHhcCCcCCCCceeee-CCHHHHHHHHh
Q 034523 32 LAVYVGEIEKSRFVVPVSYL--KHPSFQNLLSQAEEEFGFDHPMGGLTIP-CSEKVFMDLTS 90 (92)
Q Consensus 32 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~iP-C~~~~Fe~vl~ 90 (92)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ... ..|.|+ .+.+.|+.++.
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~ 82 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMD 82 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHH
Confidence 3455664 6777776666 479999999754333 223 578888 68889988875
No 23
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=24.54 E-value=1.2e+02 Score=19.05 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=23.3
Q ss_pred cceEEEEEccCCCcHHHHHHHHhHHHhcCCcC
Q 034523 40 EKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDH 71 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~ 71 (92)
+-.|+.||.+ ..|++|.++-.+-|++..
T Consensus 16 di~~~~v~~~----i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 16 DIMITHFEPS----ISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp CEEEEEECTT----CCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCC----CCHHHHHHHHHHHhCCCC
Confidence 6788888874 689999999999999853
No 24
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=23.77 E-value=18 Score=24.44 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=17.8
Q ss_pred CCCCeEEEEeecCcceEEE----------EEccCCCcHHHH
Q 034523 27 VPKGHLAVYVGEIEKSRFV----------VPVSYLKHPSFQ 57 (92)
Q Consensus 27 vpkG~~aVyVG~~~~~Rfv----------Vp~~~L~hP~F~ 57 (92)
-..||+|+.|-. +-+|+ +|+-+||.|.-+
T Consensus 85 G~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 458999999963 44555 688888888643
No 25
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=23.27 E-value=48 Score=17.01 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=10.3
Q ss_pred HHHHHHhHHHhcC
Q 034523 56 FQNLLSQAEEEFG 68 (92)
Q Consensus 56 F~~LL~~aeeEfG 68 (92)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888889987
No 26
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=22.92 E-value=28 Score=24.06 Aligned_cols=29 Identities=41% Similarity=0.544 Sum_probs=25.6
Q ss_pred cceEEEEEccCCCcH---HHHHHHHhHHHhcC
Q 034523 40 EKSRFVVPVSYLKHP---SFQNLLSQAEEEFG 68 (92)
Q Consensus 40 ~~~RfvVp~~~L~hP---~F~~LL~~aeeEfG 68 (92)
+++=|-||+.-|+|= .-++|+++|.|.|+
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 678899999999884 48999999999998
No 27
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.90 E-value=1.4e+02 Score=19.45 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=35.7
Q ss_pred EeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCC--------cCCCCceeeeCCHHHHHH
Q 034523 35 YVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGF--------DHPMGGLTIPCSEKVFMD 87 (92)
Q Consensus 35 yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~--------~~~~G~L~iPC~~~~Fe~ 87 (92)
|.| +.+||. ++++..+.+.+|-.+-..-||+ |.+|-.++|.-+.+..|-
T Consensus 21 f~g--e~~rF~--Vs~~~~~tweel~~mvk~~f~L~~~~IkY~DEenD~V~i~Sq~E~eEA 77 (101)
T 1wj6_A 21 FKN--EIQSFL--VSDPENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEYEEA 77 (101)
T ss_dssp ETT--EEEEEE--ESCTTTSCHHHHHHHHHHHHCCSSBCCEEECTTSCEECCCSHHHHHHH
T ss_pred EcC--CeeEEE--ecCCCCCCHHHHHHHHHHHcCCCceEEEEecCCCCEEEEecHHHHHHH
Confidence 445 577775 5889999999999999999995 445456777776554443
No 28
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=22.54 E-value=48 Score=26.57 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=29.7
Q ss_pred CCCCCeEEEEeec---------CcceEEEEEccCCCcHHHHHHHHhHHHhcCC
Q 034523 26 TVPKGHLAVYVGE---------IEKSRFVVPVSYLKHPSFQNLLSQAEEEFGF 69 (92)
Q Consensus 26 ~vpkG~~aVyVG~---------~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 69 (92)
..|++++-+.|.| ..++|-.-=++ +.||.||+.|.+++++.|+
T Consensus 403 tt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 403 TTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 3577777777755 12344443344 8999999999988888764
No 29
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=20.85 E-value=59 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=26.2
Q ss_pred CeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCc
Q 034523 30 GHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFD 70 (92)
Q Consensus 30 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 70 (92)
....|+-|++. +..-.--+.+++|.|++.++++.+-+|++
T Consensus 10 ~~~f~F~GQGs-Q~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGS-QSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTC-CCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcch-hhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 45566777631 11111223338999999999999999875
No 30
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=20.55 E-value=62 Score=20.52 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHhH------HHhcCCcCCCCceeee--CCHHHHHHH
Q 034523 51 LKHPSFQNLLSQA------EEEFGFDHPMGGLTIP--CSEKVFMDL 88 (92)
Q Consensus 51 L~hP~F~~LL~~a------eeEfG~~~~~G~L~iP--C~~~~Fe~v 88 (92)
+++|.|++=+... =+..||...++.+++| +++...+++
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~ 91 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKI 91 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHH
Confidence 6778888865443 1357998777889998 455554444
No 31
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=20.33 E-value=58 Score=20.72 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=21.4
Q ss_pred CCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCc
Q 034523 29 KGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFD 70 (92)
Q Consensus 29 kG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 70 (92)
|-+++-..|. -.-|.||+-- -.+-+-|+.||+||+-+
T Consensus 34 KKf~vtveg~--~~s~EVPV~A---~sLdEAlE~AE~eYeea 70 (84)
T 2lmc_A 34 KKFWATVESS--EHSFEVPIYA---ETLDEALELAEWQYVPA 70 (84)
T ss_dssp SEEEEEEECS--SCEEEEEECC---SSHHHHHHHHHHTTGGG
T ss_pred eEEEEEEecc--cceEEEeeec---ccHHHHHHHHHHHhhhc
Confidence 3444444442 3556666533 23667788888888744
Done!