Query 034525
Match_columns 92
No_of_seqs 137 out of 252
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:48:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05024 S-100A10 S-100A10: A s 98.5 4.1E-08 8.9E-13 65.9 2.4 28 1-28 53-80 (91)
2 PF00036 EF-hand_1: EF hand; 98.3 1.1E-07 2.5E-12 51.3 0.3 25 1-25 5-29 (29)
3 cd05022 S-100A13 S-100A13: S-1 98.2 9.2E-07 2E-11 58.4 2.3 28 1-28 52-79 (89)
4 cd05023 S-100A11 S-100A11: S-1 98.1 1.8E-06 3.9E-11 56.7 2.4 28 1-28 57-84 (89)
5 cd05026 S-100Z S-100Z: S-100Z 98.0 4.7E-06 1E-10 54.5 2.3 28 1-28 58-85 (93)
6 PF13202 EF-hand_5: EF hand; P 97.9 3.8E-06 8.2E-11 43.8 0.9 21 2-22 5-25 (25)
7 cd05029 S-100A6 S-100A6: S-100 97.7 2E-05 4.3E-10 51.5 2.3 28 1-28 56-83 (88)
8 cd05027 S-100B S-100B: S-100B 97.6 3.5E-05 7.6E-10 50.3 2.3 28 1-28 56-83 (88)
9 cd05025 S-100A1 S-100A1: S-100 97.4 9.3E-05 2E-09 47.6 2.2 28 1-28 57-84 (92)
10 PF13833 EF-hand_8: EF-hand do 97.4 6.4E-05 1.4E-09 43.6 1.2 24 1-24 30-53 (54)
11 PF13499 EF-hand_7: EF-hand do 97.4 5E-05 1.1E-09 45.3 0.6 21 2-22 46-66 (66)
12 cd05030 calgranulins Calgranul 97.4 0.00012 2.6E-09 47.4 2.4 28 1-28 56-83 (88)
13 PF13405 EF-hand_6: EF-hand do 97.2 0.00013 2.8E-09 38.8 0.6 23 2-24 6-28 (31)
14 cd05031 S-100A10_like S-100A10 96.9 0.00056 1.2E-08 44.2 2.1 27 1-27 56-82 (94)
15 smart00054 EFh EF-hand, calciu 96.9 0.00041 9E-09 33.2 1.1 24 1-24 5-28 (29)
16 cd00052 EH Eps15 homology doma 96.6 0.0017 3.6E-08 38.1 2.3 24 2-25 39-62 (67)
17 cd00213 S-100 S-100: S-100 dom 96.6 0.0016 3.6E-08 41.1 2.3 28 1-28 56-83 (88)
18 PF14788 EF-hand_10: EF hand; 96.5 0.001 2.2E-08 40.7 0.6 26 1-26 26-51 (51)
19 cd00252 SPARC_EC SPARC_EC; ext 96.3 0.0021 4.6E-08 44.3 1.4 22 1-22 85-106 (116)
20 smart00027 EH Eps15 homology d 96.1 0.0044 9.5E-08 40.0 2.3 28 1-28 49-76 (96)
21 KOG0034 Ca2+/calmodulin-depend 95.9 0.0035 7.7E-08 46.5 1.4 24 2-25 153-176 (187)
22 cd00051 EFh EF-hand, calcium b 95.8 0.0046 9.9E-08 34.0 1.1 21 2-22 42-62 (63)
23 KOG0027 Calmodulin and related 95.7 0.0056 1.2E-07 42.4 1.6 27 1-27 49-75 (151)
24 PF13499 EF-hand_7: EF-hand do 95.6 0.0039 8.4E-08 37.0 0.3 26 2-27 6-31 (66)
25 cd00051 EFh EF-hand, calcium b 95.1 0.017 3.8E-07 31.6 1.9 24 2-25 6-29 (63)
26 KOG4223 Reticulocalbin, calume 94.4 0.019 4.1E-07 46.3 1.3 23 2-24 206-228 (325)
27 PTZ00183 centrin; Provisional 94.0 0.034 7.3E-07 37.1 1.7 24 2-25 59-82 (158)
28 cd00052 EH Eps15 homology doma 94.0 0.039 8.5E-07 32.1 1.8 24 2-25 5-28 (67)
29 KOG0044 Ca2+ sensor (EF-Hand s 93.8 0.039 8.4E-07 41.3 1.9 23 2-24 70-92 (193)
30 PTZ00184 calmodulin; Provision 93.6 0.051 1.1E-06 35.6 2.0 24 2-25 53-76 (149)
31 KOG0044 Ca2+ sensor (EF-Hand s 93.0 0.049 1.1E-06 40.8 1.4 24 1-24 152-175 (193)
32 PTZ00184 calmodulin; Provision 91.7 0.15 3.3E-06 33.3 2.3 24 2-25 17-40 (149)
33 smart00027 EH Eps15 homology d 91.4 0.14 3.1E-06 32.9 1.9 23 2-24 16-38 (96)
34 PTZ00183 centrin; Provisional 91.4 0.14 3E-06 34.1 1.8 24 2-25 96-119 (158)
35 PLN02964 phosphatidylserine de 90.5 0.14 3.1E-06 44.4 1.6 25 1-25 184-208 (644)
36 KOG0036 Predicted mitochondria 90.2 0.18 3.8E-06 42.4 1.9 28 1-28 56-83 (463)
37 PF12763 EF-hand_4: Cytoskelet 89.3 0.21 4.6E-06 33.8 1.3 21 3-23 50-70 (104)
38 KOG0027 Calmodulin and related 88.3 0.39 8.4E-06 33.1 2.2 27 2-28 91-117 (151)
39 cd00252 SPARC_EC SPARC_EC; ext 88.2 0.28 6E-06 33.7 1.4 21 2-22 54-74 (116)
40 cd00213 S-100 S-100: S-100 dom 87.1 0.48 1E-05 29.6 1.9 23 2-24 14-38 (88)
41 KOG0034 Ca2+/calmodulin-depend 87.1 0.55 1.2E-05 34.9 2.5 27 2-28 110-136 (187)
42 KOG0041 Predicted Ca2+-binding 86.0 0.42 9.2E-06 37.1 1.4 26 1-26 140-165 (244)
43 KOG0038 Ca2+-binding kinase in 85.1 0.54 1.2E-05 35.2 1.6 24 1-24 154-177 (189)
44 cd05026 S-100Z S-100Z: S-100Z 84.5 0.63 1.4E-05 30.1 1.5 24 2-25 16-41 (93)
45 KOG2643 Ca2+ binding protein, 84.4 0.82 1.8E-05 38.8 2.5 27 2-28 431-457 (489)
46 PF14658 EF-hand_9: EF-hand do 84.3 0.67 1.4E-05 29.5 1.5 24 2-25 41-65 (66)
47 cd05031 S-100A10_like S-100A10 83.8 0.79 1.7E-05 29.3 1.8 23 2-24 14-38 (94)
48 PRK12309 transaldolase/EF-hand 82.8 0.88 1.9E-05 37.2 2.0 17 3-19 341-357 (391)
49 KOG2643 Ca2+ binding protein, 82.3 1.2 2.7E-05 37.7 2.8 23 2-24 239-261 (489)
50 cd05027 S-100B S-100B: S-100B 82.1 1.1 2.3E-05 29.1 1.9 23 2-24 14-38 (88)
51 COG5126 FRQ1 Ca2+-binding prot 80.6 1.1 2.4E-05 32.7 1.8 25 2-27 62-86 (160)
52 cd05025 S-100A1 S-100A1: S-100 80.6 1.3 2.8E-05 28.1 1.9 23 2-24 15-39 (92)
53 KOG0046 Ca2+-binding actin-bun 79.0 1.6 3.6E-05 37.9 2.5 28 2-29 63-90 (627)
54 cd05022 S-100A13 S-100A13: S-1 78.5 1.7 3.6E-05 28.4 1.9 23 2-24 14-37 (89)
55 KOG0041 Predicted Ca2+-binding 78.1 1.3 2.8E-05 34.5 1.5 27 1-27 104-130 (244)
56 cd05029 S-100A6 S-100A6: S-100 76.2 1.6 3.4E-05 28.2 1.3 23 2-24 16-40 (88)
57 KOG4223 Reticulocalbin, calume 75.2 1.6 3.4E-05 35.5 1.3 22 2-23 169-190 (325)
58 cd05023 S-100A11 S-100A11: S-1 74.1 2.6 5.6E-05 27.3 1.9 24 2-25 15-40 (89)
59 KOG0377 Protein serine/threoni 73.5 2 4.4E-05 37.0 1.6 21 3-23 594-614 (631)
60 PLN02964 phosphatidylserine de 72.8 2.3 4.9E-05 37.2 1.8 24 2-25 221-244 (644)
61 PF10591 SPARC_Ca_bdg: Secrete 70.2 0.57 1.2E-05 31.8 -2.0 22 2-23 60-81 (113)
62 KOG0028 Ca2+-binding protein ( 65.8 4 8.6E-05 30.5 1.6 25 2-26 75-99 (172)
63 PF01309 EAV_GS: Equine arteri 64.8 11 0.00025 27.8 3.8 62 21-82 85-159 (196)
64 PF09546 Spore_III_AE: Stage I 63.0 24 0.00052 28.2 5.7 67 9-75 165-240 (328)
65 KOG4251 Calcium binding protei 62.7 1.6 3.4E-05 35.2 -1.1 23 1-23 241-263 (362)
66 KOG0037 Ca2+-binding protein, 62.3 6.2 0.00013 30.5 2.1 22 3-24 101-122 (221)
67 PF12174 RST: RCD1-SRO-TAF4 (R 59.9 4.9 0.00011 25.6 1.0 25 4-28 33-57 (70)
68 PF05517 p25-alpha: p25-alpha 58.5 5.2 0.00011 28.4 1.1 23 7-29 52-74 (154)
69 PF09912 DUF2141: Uncharacteri 55.6 3.1 6.7E-05 28.1 -0.5 13 5-17 61-73 (112)
70 KOG3866 DNA-binding protein of 55.6 4.1 8.9E-05 33.8 0.2 21 1-21 301-321 (442)
71 PF00404 Dockerin_1: Dockerin 54.5 21 0.00046 17.9 2.7 16 6-21 1-16 (21)
72 PF06226 DUF1007: Protein of u 51.6 12 0.00025 27.8 2.0 28 1-28 55-82 (212)
73 KOG4578 Uncharacterized conser 51.2 9.2 0.0002 31.9 1.5 26 1-26 375-400 (421)
74 KOG0028 Ca2+-binding protein ( 49.4 16 0.00035 27.3 2.5 19 5-23 115-133 (172)
75 KOG0968 DNA polymerase zeta, c 49.1 11 0.00023 35.9 1.7 46 41-88 1275-1331(1488)
76 PHA02844 putative transmembran 48.4 18 0.00039 23.7 2.3 17 12-28 17-33 (75)
77 PF09454 Vps23_core: Vps23 cor 45.8 37 0.0008 21.1 3.3 21 10-30 37-57 (65)
78 PF07217 Het-C: Heterokaryon i 45.1 14 0.0003 32.4 1.7 32 54-85 395-426 (606)
79 PHA02650 hypothetical protein; 42.7 24 0.00051 23.5 2.2 17 12-28 17-33 (81)
80 PRK09272 hypothetical protein; 42.6 38 0.00083 23.3 3.3 30 36-69 6-35 (109)
81 PHA02975 hypothetical protein; 42.3 27 0.00059 22.6 2.4 17 12-28 17-33 (69)
82 PF06942 GlpM: GlpM protein; 41.7 24 0.00052 24.5 2.2 46 37-91 3-48 (107)
83 KOG0751 Mitochondrial aspartat 40.8 20 0.00043 31.5 2.0 25 5-29 83-107 (694)
84 PHA02692 hypothetical protein; 40.3 20 0.00043 23.2 1.5 15 14-28 19-33 (70)
85 COG5562 Phage envelope protein 38.9 18 0.00038 26.2 1.2 21 4-24 80-100 (137)
86 KOG0037 Ca2+-binding protein, 38.7 21 0.00045 27.7 1.7 23 2-24 130-152 (221)
87 PF12575 DUF3753: Protein of u 37.5 31 0.00068 22.4 2.1 15 14-28 19-33 (72)
88 PF10841 DUF2644: Protein of u 35.4 49 0.0011 20.8 2.7 26 3-28 1-26 (60)
89 KOG4251 Calcium binding protei 34.8 45 0.00098 27.1 3.1 30 1-30 106-135 (362)
90 PF09373 PMBR: Pseudomurein-bi 34.5 55 0.0012 17.5 2.5 17 10-26 2-18 (33)
91 KOG1029 Endocytic adaptor prot 33.3 55 0.0012 30.3 3.6 18 5-22 58-75 (1118)
92 KOG3555 Ca2+-binding proteogly 32.6 21 0.00047 29.9 0.9 21 1-21 255-275 (434)
93 PF00701 DHDPS: Dihydrodipicol 32.2 46 0.001 25.1 2.6 21 8-28 14-34 (289)
94 PF06450 NhaB: Bacterial Na+/H 32.2 92 0.002 26.8 4.6 54 3-58 177-238 (515)
95 KOG0030 Myosin essential light 32.1 33 0.00072 25.2 1.8 43 2-60 17-59 (152)
96 COG0329 DapA Dihydrodipicolina 31.8 49 0.0011 25.7 2.8 20 9-28 18-37 (299)
97 TIGR00774 NhaB Na+/H+ antiport 31.5 1.6E+02 0.0036 25.5 6.0 53 3-55 176-234 (515)
98 PF13121 DUF3976: Domain of un 31.3 68 0.0015 18.6 2.6 26 4-29 6-31 (41)
99 KOG4578 Uncharacterized conser 29.8 44 0.00096 27.9 2.3 27 2-28 339-368 (421)
100 KOG0036 Predicted mitochondria 29.7 40 0.00087 28.7 2.1 22 2-23 124-145 (463)
101 PHA03054 IMV membrane protein; 28.8 59 0.0013 21.2 2.3 17 12-28 17-33 (72)
102 cd00952 CHBPH_aldolase Trans-o 28.5 61 0.0013 25.2 2.8 22 7-28 20-41 (309)
103 cd00408 DHDPS-like Dihydrodipi 28.3 63 0.0014 24.1 2.8 21 8-28 10-30 (281)
104 PF09796 QCR10: Ubiquinol-cyto 27.5 45 0.00098 21.0 1.6 41 26-69 6-47 (64)
105 KOG0031 Myosin regulatory ligh 27.4 49 0.0011 24.8 2.0 23 4-26 40-62 (171)
106 PF09279 EF-hand_like: Phospho 27.0 33 0.00072 21.0 0.9 26 2-28 6-31 (83)
107 TIGR00674 dapA dihydrodipicoli 26.6 69 0.0015 24.2 2.8 21 8-28 11-31 (285)
108 PLN02417 dihydrodipicolinate s 26.2 72 0.0016 24.3 2.8 21 8-28 14-34 (280)
109 cd00950 DHDPS Dihydrodipicolin 25.9 74 0.0016 23.8 2.8 21 8-28 13-33 (284)
110 TIGR02313 HpaI-NOT-DapA 2,4-di 25.3 75 0.0016 24.4 2.8 21 8-28 13-33 (294)
111 PF12767 SAGA-Tad1: Transcript 24.8 95 0.0021 23.4 3.2 33 11-43 40-72 (252)
112 cd00954 NAL N-Acetylneuraminic 24.8 78 0.0017 24.0 2.8 21 8-28 13-33 (288)
113 KOG4004 Matricellular protein 24.2 38 0.00083 26.5 1.0 22 1-22 227-248 (259)
114 PLN00090 photosystem II reacti 24.0 1.7E+02 0.0036 20.4 4.0 46 32-89 40-102 (113)
115 PF14513 DAG_kinase_N: Diacylg 23.8 59 0.0013 23.2 1.8 34 8-41 44-78 (138)
116 PF10891 DUF2719: Protein of u 23.6 56 0.0012 21.7 1.5 16 10-25 33-48 (81)
117 PRK03170 dihydrodipicolinate s 23.6 86 0.0019 23.7 2.8 21 8-28 14-34 (292)
118 TIGR02829 spore_III_AE stage I 23.3 1.7E+02 0.0037 24.2 4.6 65 11-75 223-296 (381)
119 KOG4666 Predicted phosphate ac 23.2 60 0.0013 27.2 1.9 24 2-25 337-360 (412)
120 PRK03620 5-dehydro-4-deoxygluc 22.3 93 0.002 24.0 2.8 21 8-28 20-40 (303)
121 PRK04147 N-acetylneuraminate l 22.1 97 0.0021 23.6 2.8 20 8-27 16-35 (293)
122 PHA02819 hypothetical protein; 22.0 67 0.0015 20.9 1.6 17 12-28 17-33 (71)
123 COG3067 NhaB Na+/H+ antiporter 21.8 1.7E+02 0.0037 24.9 4.3 65 3-72 177-250 (516)
124 TIGR03249 KdgD 5-dehydro-4-deo 21.6 98 0.0021 23.6 2.8 21 8-28 18-38 (296)
125 PRK12320 hypothetical protein; 21.5 1.6E+02 0.0034 26.2 4.3 47 15-63 462-508 (699)
126 cd00951 KDGDH 5-dehydro-4-deox 20.1 1.1E+02 0.0024 23.3 2.8 21 8-28 13-33 (289)
No 1
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.55 E-value=4.1e-08 Score=65.88 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=25.9
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||+|||+||+.||+.++..
T Consensus 53 im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 53 IMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 5899999999999999999999998765
No 2
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.34 E-value=1.1e-07 Score=51.28 Aligned_cols=25 Identities=40% Similarity=0.709 Sum_probs=22.2
Q ss_pred CcccccccCCCCcCHHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
+|+.+|+|+||.|||+||..++.++
T Consensus 5 ~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 5 AFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 3688999999999999999998753
No 3
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.20 E-value=9.2e-07 Score=58.36 Aligned_cols=28 Identities=39% Similarity=0.576 Sum_probs=25.9
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||+|||+||+.+|.+++..
T Consensus 52 mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 52 KMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 5789999999999999999999998876
No 4
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.11 E-value=1.8e-06 Score=56.65 Aligned_cols=28 Identities=50% Similarity=0.781 Sum_probs=25.5
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||+|+|+||+.+|.+++..
T Consensus 57 ll~~~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 57 MMKKLDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4789999999999999999999998765
No 5
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.97 E-value=4.7e-06 Score=54.55 Aligned_cols=28 Identities=39% Similarity=0.609 Sum_probs=25.4
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||.|||+||+.++..++..
T Consensus 58 i~~elD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 58 IMNDLDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999998765
No 6
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.92 E-value=3.8e-06 Score=43.80 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=19.3
Q ss_pred cccccccCCCCcCHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi 22 (92)
|+.+|.|+||.|+++||.+++
T Consensus 5 F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 5 FQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHC
Confidence 678999999999999999875
No 7
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.74 E-value=2e-05 Score=51.53 Aligned_cols=28 Identities=32% Similarity=0.547 Sum_probs=25.4
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||.|+|+||+.++.+++..
T Consensus 56 m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 56 LMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999999998765
No 8
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.64 E-value=3.5e-05 Score=50.33 Aligned_cols=28 Identities=36% Similarity=0.612 Sum_probs=24.7
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||.|+|+||+.++...+..
T Consensus 56 ~i~~~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 56 VMETLDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4788999999999999999999887654
No 9
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.43 E-value=9.3e-05 Score=47.62 Aligned_cols=28 Identities=50% Similarity=0.695 Sum_probs=25.0
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+++|.|+||.|+|+||+.++..++..
T Consensus 57 i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 57 IMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4788999999999999999999987765
No 10
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.41 E-value=6.4e-05 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.679 Sum_probs=21.3
Q ss_pred CcccccccCCCCcCHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
+++.+|.|+||.|+|+||+.++..
T Consensus 30 l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 30 LFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHhcccCCCCCCCHHHHHHHHHh
Confidence 367899999999999999999864
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.40 E-value=5e-05 Score=45.33 Aligned_cols=21 Identities=33% Similarity=0.771 Sum_probs=18.7
Q ss_pred cccccccCCCCcCHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi 22 (92)
++.+|+|+||.|+|+||..++
T Consensus 46 ~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 46 FREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHhCCCCcCCCcHHHHhccC
Confidence 678899999999999999875
No 12
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.39 E-value=0.00012 Score=47.36 Aligned_cols=28 Identities=32% Similarity=0.591 Sum_probs=24.5
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+.+|.|+||.|+|+||+.++..++..
T Consensus 56 i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 56 IFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4778999999999999999999887554
No 13
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.18 E-value=0.00013 Score=38.81 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.1
Q ss_pred cccccccCCCCcCHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
++.+|.|+||.|+++||..++.+
T Consensus 6 F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 6 FKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHCCCCCCcCcHHHHHHHHHH
Confidence 67899999999999999999974
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.94 E-value=0.00056 Score=44.22 Aligned_cols=27 Identities=41% Similarity=0.710 Sum_probs=23.3
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTS 27 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~ 27 (92)
+|+++|.|+||.|+|+||+.++.....
T Consensus 56 ~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 56 IMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 467899999999999999999976543
No 15
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.93 E-value=0.00041 Score=33.18 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=21.1
Q ss_pred CcccccccCCCCcCHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
+++.+|.|++|.|+++||..++..
T Consensus 5 ~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 5 AFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHCCCCCCcEeHHHHHHHHHh
Confidence 367899999999999999999864
No 16
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.63 E-value=0.0017 Score=38.09 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=14.2
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|+||.|+|+||+.++...
T Consensus 39 ~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 39 WDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHhcCCCCCcCCHHHHHHHHHHH
Confidence 445566666666666666655443
No 17
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.60 E-value=0.0016 Score=41.07 Aligned_cols=28 Identities=43% Similarity=0.740 Sum_probs=24.7
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+.+|.|+||.|+|+||+.++...+..
T Consensus 56 i~~~~d~~~~g~I~f~eF~~~~~~~~~~ 83 (88)
T cd00213 56 IMKDLDVNKDGKVDFQEFLVLIGKLAVA 83 (88)
T ss_pred HHHHhccCCCCcCcHHHHHHHHHHHHHH
Confidence 4678999999999999999999887664
No 18
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.46 E-value=0.001 Score=40.68 Aligned_cols=26 Identities=42% Similarity=0.848 Sum_probs=22.3
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLT 26 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~ 26 (92)
++++||++++|.++.+||.+|...+|
T Consensus 26 LFq~~D~s~~g~Le~~Ef~~Fy~~LT 51 (51)
T PF14788_consen 26 LFQECDKSQSGRLEGEEFEEFYKRLT 51 (51)
T ss_dssp HHHHH-SSSSSEBEHHHHHHHHHHHS
T ss_pred HHHHhcccCCCCccHHHHHHHHHHhC
Confidence 47899999999999999999988764
No 19
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.27 E-value=0.0021 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.694 Sum_probs=20.0
Q ss_pred CcccccccCCCCcCHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi 22 (92)
+|+.+|.|+||.|+++||...+
T Consensus 85 f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 85 FFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHCCCCCCCCCHHHHHHHH
Confidence 3678999999999999999988
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.11 E-value=0.0044 Score=40.04 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=21.9
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+++.+|.|+||.|+|+||+.++..+...
T Consensus 49 i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 49 IWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 3567888888888888888888776655
No 21
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.94 E-value=0.0035 Score=46.50 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=22.0
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
|++.|.++||.|+||||..++.+.
T Consensus 153 ~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 153 FEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHcC
Confidence 689999999999999999999764
No 22
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.78 E-value=0.0046 Score=34.00 Aligned_cols=21 Identities=38% Similarity=0.806 Sum_probs=13.4
Q ss_pred cccccccCCCCcCHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi 22 (92)
++.+|.|+||.|+++||..++
T Consensus 42 ~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 42 IREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHhCCCCCCeEeHHHHHHHh
Confidence 455666666777777766554
No 23
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=95.72 E-value=0.0056 Score=42.35 Aligned_cols=27 Identities=44% Similarity=0.804 Sum_probs=23.7
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTS 27 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~ 27 (92)
+++++|.|+||.|+|+||..++.+...
T Consensus 49 ~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 49 LIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 468899999999999999999987654
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=95.59 E-value=0.0039 Score=37.00 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.3
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHh
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTS 27 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~ 27 (92)
++.+|+|+||.|+.+||..++..+..
T Consensus 6 F~~~D~d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 6 FKKFDKDGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHSTTSSSEEEHHHHHHHHHHTTS
T ss_pred HHHHcCCccCCCCHHHHHHHHHHhcc
Confidence 67899999999999999999988754
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.07 E-value=0.017 Score=31.57 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=21.5
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|++|.++++||..++...
T Consensus 6 f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 6 FRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 567899999999999999999765
No 26
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=0.019 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.9
Q ss_pred cccccccCCCCcCHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
|++.|+|+||.|+++||+.=+..
T Consensus 206 l~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 206 LEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HhhcccCCCCceeHHHHHhHHhh
Confidence 67899999999999999876644
No 27
>PTZ00183 centrin; Provisional
Probab=94.01 E-value=0.034 Score=37.13 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=19.5
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|+||.|+|+||+.++...
T Consensus 59 ~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 59 IADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHhCCCCCCcEeHHHHHHHHHHH
Confidence 567888999999999998887653
No 28
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.97 E-value=0.039 Score=32.10 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.1
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|+||.|+.+|+..++.+.
T Consensus 5 F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 5 FRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHc
Confidence 567999999999999999998653
No 29
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=93.80 E-value=0.039 Score=41.33 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=13.3
Q ss_pred cccccccCCCCcCHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
++..|+|+||.|+|+||+.-+..
T Consensus 70 F~~fD~~~dg~i~F~Efi~als~ 92 (193)
T KOG0044|consen 70 FRTFDKNKDGTIDFLEFICALSL 92 (193)
T ss_pred HHHhcccCCCCcCHHHHHHHHHH
Confidence 34556666666666665555543
No 30
>PTZ00184 calmodulin; Provisional
Probab=93.64 E-value=0.051 Score=35.59 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=19.0
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|+||.++|+||+.++...
T Consensus 53 ~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 53 INEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHhcCcCCCCcCcHHHHHHHHHHh
Confidence 456788888888888888887654
No 31
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=93.03 E-value=0.049 Score=40.78 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.0
Q ss_pred CcccccccCCCCcCHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
+++++|.|+||+++++||++....
T Consensus 152 if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 152 IFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHcCCCCCCcccHHHHHHHhhh
Confidence 468899999999999999988654
No 32
>PTZ00184 calmodulin; Provisional
Probab=91.67 E-value=0.15 Score=33.29 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.8
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|++|.|+++||..++..+
T Consensus 17 F~~~D~~~~G~i~~~e~~~~l~~~ 40 (149)
T PTZ00184 17 FSLFDKDGDGTITTKELGTVMRSL 40 (149)
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHh
Confidence 567899999999999999988653
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=91.45 E-value=0.14 Score=32.88 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.9
Q ss_pred cccccccCCCCcCHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
++.+|.|+||.|+++|+..++..
T Consensus 16 F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 16 FRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHhCCCCCCeEeHHHHHHHHHH
Confidence 56799999999999999999866
No 34
>PTZ00183 centrin; Provisional
Probab=91.35 E-value=0.14 Score=34.14 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.0
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
++.+|.|++|.|+++||..++..+
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHHHh
Confidence 678999999999999999998654
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=90.51 E-value=0.14 Score=44.38 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.0
Q ss_pred CcccccccCCCCcCHHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
+|+.+|.|+||.|+|+||+.++..+
T Consensus 184 mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 184 ILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3577899999999999999988764
No 36
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=90.23 E-value=0.18 Score=42.43 Aligned_cols=28 Identities=25% Similarity=0.531 Sum_probs=23.6
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+++.+|.|.||.+||+||.+++...-.+
T Consensus 56 l~~~~d~~~dg~vDy~eF~~Y~~~~E~~ 83 (463)
T KOG0036|consen 56 LFSAMDANRDGRVDYSEFKRYLDNKELE 83 (463)
T ss_pred HHHhcccCcCCcccHHHHHHHHHHhHHH
Confidence 3678999999999999999999764444
No 37
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=89.26 E-value=0.21 Score=33.77 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=16.8
Q ss_pred ccccccCCCCcCHHHHHHHHH
Q 034525 3 KECDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 3 k~lD~N~DgeIdfeEF~~fi~ 23 (92)
+-+|.|+||.+|++||..-|.
T Consensus 50 ~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 50 NLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHH-SSSSSEEEHHHHHHHHH
T ss_pred hhhcCCCCCcCCHHHHHHHHH
Confidence 347999999999999987663
No 38
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=88.34 E-value=0.39 Score=33.11 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=17.8
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
++.+|.|+||.|+.+|+..++..+-.+
T Consensus 91 F~~fD~d~~G~Is~~el~~~l~~lg~~ 117 (151)
T KOG0027|consen 91 FRVFDKDGDGFISASELKKVLTSLGEK 117 (151)
T ss_pred HHHHccCCCCcCcHHHHHHHHHHhCCc
Confidence 345677777777777777777665444
No 39
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=88.19 E-value=0.28 Score=33.73 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=18.8
Q ss_pred cccccccCCCCcCHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi 22 (92)
++.+|.|+||.|+.+|...+.
T Consensus 54 F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 54 FNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHCCCCCCcCCHHHHHHHH
Confidence 678999999999999999774
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=87.12 E-value=0.48 Score=29.65 Aligned_cols=23 Identities=9% Similarity=0.203 Sum_probs=20.5
Q ss_pred cccccc--cCCCCcCHHHHHHHHHH
Q 034525 2 MKECDL--NLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~--N~DgeIdfeEF~~fi~~ 24 (92)
++.+|+ |+||.|+++||..++..
T Consensus 14 F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 14 FHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHhhccCCCCcCcHHHHHHHHHH
Confidence 567899 89999999999999975
No 41
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=87.10 E-value=0.55 Score=34.87 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.9
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
++-||.|+||-|+++|+...+..+...
T Consensus 110 F~vYD~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 110 FRVYDLDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHHHcc
Confidence 466999999999999999999988774
No 42
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=85.96 E-value=0.42 Score=37.13 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=18.0
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLT 26 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~ 26 (92)
||++.|.|.||.|+|.||+-..++..
T Consensus 140 mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 140 MIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHhhcccccchhHHHHHHHHHHHh
Confidence 46777777777777777776655533
No 43
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=85.06 E-value=0.54 Score=35.16 Aligned_cols=24 Identities=38% Similarity=0.657 Sum_probs=21.1
Q ss_pred CcccccccCCCCcCHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
++++.|.|+||.++|.||-.+|.+
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHh
Confidence 367899999999999999998864
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=84.46 E-value=0.63 Score=30.13 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.1
Q ss_pred ccccc-ccCCCC-cCHHHHHHHHHHH
Q 034525 2 MKECD-LNLDGE-LDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD-~N~Dge-IdfeEF~~fi~~l 25 (92)
|+.+| .|+||. |+.+|+..++.+.
T Consensus 16 F~~~dd~dgdg~~Is~~EL~~ll~~~ 41 (93)
T cd05026 16 FHNYSGKEGDRYKLSKGELKELLQRE 41 (93)
T ss_pred HHHHHccCCCCCEECHHHHHHHHHHH
Confidence 56778 789985 9999999999763
No 45
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=84.39 E-value=0.82 Score=38.79 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.4
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+.-.|.|+||.++++||+..|.+....
T Consensus 431 F~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 431 FTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred EEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 455799999999999999999887665
No 46
>PF14658 EF-hand_9: EF-hand domain
Probab=84.31 E-value=0.67 Score=29.51 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=20.3
Q ss_pred cccccccCC-CCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLD-GELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~D-geIdfeEF~~fi~~l 25 (92)
.+++|-|+. |+++|+.|...|+++
T Consensus 41 ~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 41 INELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred HHHhCCCCCCceEeHHHHHHHHHHh
Confidence 467888877 999999999999875
No 47
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=83.80 E-value=0.79 Score=29.31 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.8
Q ss_pred cccccc-cC-CCCcCHHHHHHHHHH
Q 034525 2 MKECDL-NL-DGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~-N~-DgeIdfeEF~~fi~~ 24 (92)
++.+|. |+ ||.|+.+|+..++..
T Consensus 14 F~~~D~~dg~dG~Is~~El~~~l~~ 38 (94)
T cd05031 14 FHRYAGKDGDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHhccCCCCCeECHHHHHHHHHH
Confidence 567887 97 699999999999875
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=82.76 E-value=0.88 Score=37.25 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=8.5
Q ss_pred ccccccCCCCcCHHHHH
Q 034525 3 KECDLNLDGELDHEEFV 19 (92)
Q Consensus 3 k~lD~N~DgeIdfeEF~ 19 (92)
+-+|.|+||.|+++||+
T Consensus 341 ~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 341 RLYDLDGDGFITREEWL 357 (391)
T ss_pred HHhCCCCCCcCcHHHHH
Confidence 34455555555555553
No 49
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=82.28 E-value=1.2 Score=37.72 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=19.1
Q ss_pred cccccccCCCCcCHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
++-+|.|+||+||.|||.....-
T Consensus 239 FKMFD~dgnG~IdkeEF~~v~~l 261 (489)
T KOG2643|consen 239 FKMFDLDGNGEIDKEEFETVQQL 261 (489)
T ss_pred eeeeecCCCCcccHHHHHHHHHH
Confidence 46689999999999999876643
No 50
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.08 E-value=1.1 Score=29.07 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.4
Q ss_pred ccccc-ccCCC-CcCHHHHHHHHHH
Q 034525 2 MKECD-LNLDG-ELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD-~N~Dg-eIdfeEF~~fi~~ 24 (92)
++.+| .|+|| .|+.+|+..++..
T Consensus 14 F~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 14 FHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHhcccCCCcCEECHHHHHHHHHH
Confidence 56787 79999 5999999999987
No 51
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=80.63 E-value=1.1 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=18.0
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHh
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTS 27 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~ 27 (92)
|++.|. +.+.|+|+||+.+|.....
T Consensus 62 ~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 62 FEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred HHhccC-CCCccCHHHHHHHHHHHhc
Confidence 556666 6678888888888877663
No 52
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=80.58 E-value=1.3 Score=28.14 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=19.8
Q ss_pred ccccc-ccCCC-CcCHHHHHHHHHH
Q 034525 2 MKECD-LNLDG-ELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD-~N~Dg-eIdfeEF~~fi~~ 24 (92)
++.+| .|+|| .|+.+|+..++..
T Consensus 15 F~~fDd~dg~G~~Is~~El~~~l~~ 39 (92)
T cd05025 15 FHAHSGKEGDKYKLSKKELKDLLQT 39 (92)
T ss_pred HHHHhcccCCCCeECHHHHHHHHHH
Confidence 56786 99999 5999999999975
No 53
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=78.97 E-value=1.6 Score=37.88 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=23.5
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHhhH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTSDT 29 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~~~ 29 (92)
+.+.+.|.||+++||||+.....+...+
T Consensus 63 l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 63 LGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred HhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 5778999999999999999776666663
No 54
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=78.46 E-value=1.7 Score=28.45 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=21.2
Q ss_pred cccccc-cCCCCcCHHHHHHHHHH
Q 034525 2 MKECDL-NLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~-N~DgeIdfeEF~~fi~~ 24 (92)
|+.+|. +++|.|+.+||..++.+
T Consensus 14 F~~fd~~~~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 14 FHKASVKGGKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHhCCCCCCeECHHHHHHHHHH
Confidence 577899 99999999999999987
No 55
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=78.13 E-value=1.3 Score=34.50 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=23.5
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTS 27 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~ 27 (92)
+++.||.+.||=||+.|--.||.++-.
T Consensus 104 ~Fk~yDe~rDgfIdl~ELK~mmEKLga 130 (244)
T KOG0041|consen 104 MFKQYDEDRDGFIDLMELKRMMEKLGA 130 (244)
T ss_pred HHHHhcccccccccHHHHHHHHHHhCC
Confidence 478999999999999999999887643
No 56
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=76.21 E-value=1.6 Score=28.24 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.8
Q ss_pred cccccc-cC-CCCcCHHHHHHHHHH
Q 034525 2 MKECDL-NL-DGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~-N~-DgeIdfeEF~~fi~~ 24 (92)
|..||. |+ +|.|+.+||..++.+
T Consensus 16 F~~y~~~~~~~g~Is~~EL~~~l~~ 40 (88)
T cd05029 16 FHKYSGREGDKNTLSKKELKELIQK 40 (88)
T ss_pred HHHHHccCCCCCEECHHHHHHHHHH
Confidence 567887 77 899999999999964
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.18 E-value=1.6 Score=35.49 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.6
Q ss_pred cccccccCCCCcCHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~ 23 (92)
++.-|.|+||.++.+||..|+-
T Consensus 169 Fk~AD~d~dg~lt~EEF~aFLH 190 (325)
T KOG4223|consen 169 FKAADQDGDGSLTLEEFTAFLH 190 (325)
T ss_pred HhhcccCCCCcccHHHHHhccC
Confidence 5678999999999999999874
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=74.06 E-value=2.6 Score=27.35 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=19.8
Q ss_pred ccc-ccccCCC-CcCHHHHHHHHHHH
Q 034525 2 MKE-CDLNLDG-ELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~-lD~N~Dg-eIdfeEF~~fi~~l 25 (92)
++. .|.|+|+ .|+.+||..++.+.
T Consensus 15 F~~y~~~dg~~~~Ls~~Elk~ll~~e 40 (89)
T cd05023 15 FQKYAGKDGDSYQLSKTEFLSFMNTE 40 (89)
T ss_pred HHHHhccCCCcCeECHHHHHHHHHHh
Confidence 345 5788886 99999999999886
No 59
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=73.49 E-value=2 Score=37.02 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=17.7
Q ss_pred ccccccCCCCcCHHHHHHHHH
Q 034525 3 KECDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 3 k~lD~N~DgeIdfeEF~~fi~ 23 (92)
+..|-|+||.||+.||++-.+
T Consensus 594 ~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 594 RSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HhhccCCCCcccHHHHHHHHh
Confidence 356999999999999998653
No 60
>PLN02964 phosphatidylserine decarboxylase
Probab=72.76 E-value=2.3 Score=37.18 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.9
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
|+.+|.|+||.|+++||..++...
T Consensus 221 Fk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 221 FKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHhCCCCCCcCCHHHHHHHHHhc
Confidence 678999999999999999999884
No 61
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=70.23 E-value=0.57 Score=31.83 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=12.5
Q ss_pred cccccccCCCCcCHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~ 23 (92)
|.++|.|+||.++..|...+-.
T Consensus 60 F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 60 FCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp HHHH--T-SSEE-TTTTGGGGS
T ss_pred HhhhcCCCCCccCHHHHHHHHH
Confidence 4577888888888777766544
No 62
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=65.77 E-value=4 Score=30.52 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=18.8
Q ss_pred cccccccCCCCcCHHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLT 26 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~ 26 (92)
+.+.|+++-|.|+|++|...+....
T Consensus 75 l~d~dk~~~g~i~fe~f~~~mt~k~ 99 (172)
T KOG0028|consen 75 LADVDKEGSGKITFEDFRRVMTVKL 99 (172)
T ss_pred HHhhhhccCceechHHHHHHHHHHH
Confidence 5577888888888888888876543
No 63
>PF01309 EAV_GS: Equine arteritis virus small envelope glycoprotein ; InterPro: IPR001913 Equine arteritis virus small envelope glycoprotein (GS) is a class I transmembrane protein which adopts a number of different conformations [, ].
Probab=64.79 E-value=11 Score=27.80 Aligned_cols=62 Identities=37% Similarity=0.400 Sum_probs=43.4
Q ss_pred HHHHHHhhHHHHhhhhhhh-------hhhhhhh------HHHhhhhccCCCCccchhhhhcCchhHHHHHHHHHH
Q 034525 21 FIQKLTSDTFIVVSQGLLI-------TLVVAPT------VAMATKRATEGVPHVGKVVQRVPNSIYASLVTLAVV 82 (92)
Q Consensus 21 fi~~l~~~~~~~~~~~~li-------~~~aaP~------~A~~aKra~e~VP~vg~~v~~vP~~v~~~~~T~~~v 82 (92)
||...-...++.++++++. -.+++|+ +|-++-.|+-.||-+|.+--....++|++++-.++-
T Consensus 85 finayrqailsqysqellleainckllavvapalyhnyhlanltgpatwvvptvgqlhyyasssifassvevlaa 159 (196)
T PF01309_consen 85 FINAYRQAILSQYSQELLLEAINCKLLAVVAPALYHNYHLANLTGPATWVVPTVGQLHYYASSSIFASSVEVLAA 159 (196)
T ss_pred HHHHHHHHHHHhccHHHHHHHhccchhhhhhHHHHhhhhhhccCCCceEEecccceeeeeehhhHHHHHHHHHHH
Confidence 3333333334556666654 2356776 367788999999999998888899999998876554
No 64
>PF09546 Spore_III_AE: Stage III sporulation protein AE (spore_III_AE); InterPro: IPR014194 This entry represents the stage III sporulation protein AE, which is encoded in a spore formation operon spoIIIAABCDEFGH under the control of sigma G []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=62.97 E-value=24 Score=28.16 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=45.0
Q ss_pred CCCCcCHHHHHHHHHHHHhhH---H-HHhhhhhhhhhhhhhhHHHhh----h-hccCCCCccchhhhhcCchhHHH
Q 034525 9 LDGELDHEEFVKFIQKLTSDT---F-IVVSQGLLITLVVAPTVAMAT----K-RATEGVPHVGKVVQRVPNSIYAS 75 (92)
Q Consensus 9 ~DgeIdfeEF~~fi~~l~~~~---~-~~~~~~~li~~~aaP~~A~~a----K-ra~e~VP~vg~~v~~vP~~v~~~ 75 (92)
=.+|..+.+..+++++...-. + ...---..|=++++|.+=-++ | +.++-+|++|+.+...=+.+.-+
T Consensus 165 is~e~~ls~la~ll~~~~~w~l~~~ltvf~Gi~~iqg~~~~~~D~v~~rtak~~~~~~IPvVG~~~sda~~~v~g~ 240 (328)
T PF09546_consen 165 ISKEFKLSKLAELLKKVILWSLGTMLTVFVGILTIQGMIAPAADGVKLRTAKFATGNFIPVVGKALSDAAETVLGS 240 (328)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHH
Confidence 346778888888887765553 2 223344445677888875555 3 44689999999988777666544
No 65
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=62.73 E-value=1.6 Score=35.24 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.0
Q ss_pred CcccccccCCCCcCHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~ 23 (92)
+|.+||+|+|.+++-.||+.++-
T Consensus 241 ivrdlDqdgDkqlSvpeFislpv 263 (362)
T KOG4251|consen 241 IVRDLDQDGDKQLSVPEFISLPV 263 (362)
T ss_pred HHHHhccCCCeeecchhhhcCCC
Confidence 46789999999999999998764
No 66
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=62.29 E-value=6.2 Score=30.53 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=14.2
Q ss_pred ccccccCCCCcCHHHHHHHHHH
Q 034525 3 KECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 3 k~lD~N~DgeIdfeEF~~fi~~ 24 (92)
.-+|.+.+|.|+|+||..|-..
T Consensus 101 ~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 101 SMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred HHhcCCCCCccCHHHHHHHHHH
Confidence 3456777777777777666543
No 67
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=59.95 E-value=4.9 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=20.3
Q ss_pred cccccCCCCcCHHHHHHHHHHHHhh
Q 034525 4 ECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 4 ~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
.|+.=+.++|+++||+..++.++-+
T Consensus 33 ~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 33 HYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 3455567899999999999988776
No 68
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=58.48 E-value=5.2 Score=28.38 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=17.5
Q ss_pred ccCCCCcCHHHHHHHHHHHHhhH
Q 034525 7 LNLDGELDHEEFVKFIQKLTSDT 29 (92)
Q Consensus 7 ~N~DgeIdfeEF~~fi~~l~~~~ 29 (92)
..+...|+|++|.+.|.+++...
T Consensus 52 ~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 52 AKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp -SS-SEEEHHHHHHHHHHHHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHHHh
Confidence 34445699999999999988873
No 69
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=55.63 E-value=3.1 Score=28.12 Aligned_cols=13 Identities=38% Similarity=0.396 Sum_probs=11.5
Q ss_pred ccccCCCCcCHHH
Q 034525 5 CDLNLDGELDHEE 17 (92)
Q Consensus 5 lD~N~DgeIdfeE 17 (92)
||.|+||++|+..
T Consensus 61 hD~N~NgklD~n~ 73 (112)
T PF09912_consen 61 HDENGNGKLDTNF 73 (112)
T ss_pred EeCCCCCcCCcCC
Confidence 7999999999865
No 70
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=55.63 E-value=4.1 Score=33.77 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.8
Q ss_pred CcccccccCCCCcCHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKF 21 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~f 21 (92)
+|+..|+|+|.-|+.+||+.-
T Consensus 301 VMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 301 VMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred HHHhcccchhhhhhHHHHHhh
Confidence 489999999999999999864
No 71
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=54.51 E-value=21 Score=17.86 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=11.3
Q ss_pred cccCCCCcCHHHHHHH
Q 034525 6 DLNLDGELDHEEFVKF 21 (92)
Q Consensus 6 D~N~DgeIdfeEF~~f 21 (92)
|.|+||.|+=-.|..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 7899999986655544
No 72
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=51.61 E-value=12 Score=27.77 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=22.6
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+++++|.|+||+.+-+|-..+.......
T Consensus 55 ll~~~D~~~dg~~~~~el~~l~~~~~~~ 82 (212)
T PF06226_consen 55 LLEGLDKDGDGKLDPEELAALAKEIFDN 82 (212)
T ss_pred HHHhhhhcccCCCCHHHHHHHHHHHHhh
Confidence 3678999999999999988877665544
No 73
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=51.16 E-value=9.2 Score=31.86 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.2
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLT 26 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~ 26 (92)
+++-||-|+|..|++.|++.-+..--
T Consensus 375 ~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 375 FFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred cchhcccCCCceecHHHHhhhhcccc
Confidence 45779999999999999998775433
No 74
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=49.35 E-value=16 Score=27.29 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=8.2
Q ss_pred ccccCCCCcCHHHHHHHHH
Q 034525 5 CDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 5 lD~N~DgeIdfeEF~~fi~ 23 (92)
.|.+++|.|++.+|..+..
T Consensus 115 ~D~D~~Gkis~~~lkrvak 133 (172)
T KOG0028|consen 115 FDDDKTGKISQRNLKRVAK 133 (172)
T ss_pred ccccCCCCcCHHHHHHHHH
Confidence 3444444444444444433
No 75
>KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair]
Probab=49.06 E-value=11 Score=35.91 Aligned_cols=46 Identities=30% Similarity=0.398 Sum_probs=35.6
Q ss_pred hhhhhhHHHhhhhc-----------cCCCCccchhhhhcCchhHHHHHHHHHHHHhccc
Q 034525 41 LVVAPTVAMATKRA-----------TEGVPHVGKVVQRVPNSIYASLVTLAVVWFQNSG 88 (92)
Q Consensus 41 ~~aaP~~A~~aKra-----------~e~VP~vg~~v~~vP~~v~~~~~T~~~v~~~~~~ 88 (92)
.=++|+.|++|+|. ||+||.| +|+..|-+.++..+-.--.|+++..
T Consensus 1275 ~~~~pP~avva~r~i~~DpR~EPqygERVPYv--II~G~pG~~L~~~vvsP~efL~~~~ 1331 (1488)
T KOG0968|consen 1275 ASAAPPGAVVARRRITKDPRHEPQYGERVPYV--IIDGVPGSTLYSRVVSPEEFLRNPT 1331 (1488)
T ss_pred cccCCchHHHHHHHhccCCccCccccccCCeE--EEeCCCCCcHHHHhcCHHHHhcCCc
Confidence 34688888888863 8999999 8999999888877666666666554
No 76
>PHA02844 putative transmembrane protein; Provisional
Probab=48.38 E-value=18 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=13.4
Q ss_pred CcCHHHHHHHHHHHHhh
Q 034525 12 ELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 12 eIdfeEF~~fi~~l~~~ 28 (92)
+-||+||++-++....+
T Consensus 17 DdDFnnFI~vVksVLtd 33 (75)
T PHA02844 17 NEDFNNFIDVVKSVLSD 33 (75)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 45799999999886555
No 77
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.76 E-value=37 Score=21.14 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=18.0
Q ss_pred CCCcCHHHHHHHHHHHHhhHH
Q 034525 10 DGELDHEEFVKFIQKLTSDTF 30 (92)
Q Consensus 10 DgeIdfeEF~~fi~~l~~~~~ 30 (92)
.|.|++++|+.-++.++++-|
T Consensus 37 ~g~I~~d~~lK~vR~LaReQF 57 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLAREQF 57 (65)
T ss_dssp TTSS-HHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999866
No 78
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=45.13 E-value=14 Score=32.44 Aligned_cols=32 Identities=13% Similarity=0.391 Sum_probs=28.5
Q ss_pred ccCCCCccchhhhhcCchhHHHHHHHHHHHHh
Q 034525 54 ATEGVPHVGKVVQRVPNSIYASLVTLAVVWFQ 85 (92)
Q Consensus 54 a~e~VP~vg~~v~~vP~~v~~~~~T~~~v~~~ 85 (92)
+-|.+|++.++++++-+.+=+-++|+++-++.
T Consensus 395 ~IekIPgL~~l~e~i~e~l~~fVfs~laPfi~ 426 (606)
T PF07217_consen 395 AIEKIPGLESLIEKISEQLTVFVFSLLAPFIR 426 (606)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999988664
No 79
>PHA02650 hypothetical protein; Provisional
Probab=42.70 E-value=24 Score=23.50 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=13.4
Q ss_pred CcCHHHHHHHHHHHHhh
Q 034525 12 ELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 12 eIdfeEF~~fi~~l~~~ 28 (92)
+-||+||++-++....+
T Consensus 17 DdDFnnFI~VVkSVLtD 33 (81)
T PHA02650 17 DDDFNNFIDVVKSVLSD 33 (81)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45799999999886555
No 80
>PRK09272 hypothetical protein; Provisional
Probab=42.64 E-value=38 Score=23.30 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=24.5
Q ss_pred hhhhhhhhhhhHHHhhhhccCCCCccchhhhhcC
Q 034525 36 GLLITLVVAPTVAMATKRATEGVPHVGKVVQRVP 69 (92)
Q Consensus 36 ~~li~~~aaP~~A~~aKra~e~VP~vg~~v~~vP 69 (92)
|++++...+=.+.-++|| . |.+|.++-.+|
T Consensus 6 K~lisa~iIv~iSeiAkR---~-p~~ggliAaLP 35 (109)
T PRK09272 6 KYLISALIIVAITEIAKR---S-PTLGGLIAALP 35 (109)
T ss_pred HHHHHHHHHHHHHHHHHh---c-chHHHHHHHhH
Confidence 567777777778888999 5 99999998887
No 81
>PHA02975 hypothetical protein; Provisional
Probab=42.29 E-value=27 Score=22.56 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.2
Q ss_pred CcCHHHHHHHHHHHHhh
Q 034525 12 ELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 12 eIdfeEF~~fi~~l~~~ 28 (92)
+-||+||++-++....+
T Consensus 17 DdDF~nFI~vVksVLtd 33 (69)
T PHA02975 17 DSDFEDFIDTIMHVLTG 33 (69)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 45799999999875554
No 82
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=41.72 E-value=24 Score=24.54 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=34.7
Q ss_pred hhhhhhhhhhHHHhhhhccCCCCccchhhhhcCchhHHHHHHHHHHHHhcccCCC
Q 034525 37 LLITLVVAPTVAMATKRATEGVPHVGKVVQRVPNSIYASLVTLAVVWFQNSGRQI 91 (92)
Q Consensus 37 ~li~~~aaP~~A~~aKra~e~VP~vg~~v~~vP~~v~~~~~T~~~v~~~~~~~~~ 91 (92)
.++-+.++=.+|+++|+-..-++|+ +| .+|.+++.+..++.+..|.
T Consensus 3 ~llGa~~VllIalLsKsk~~yiaGL------vP---LFPTFALIahyiVg~er~~ 48 (107)
T PF06942_consen 3 ALLGALVVLLIALLSKSKNYYIAGL------VP---LFPTFALIAHYIVGSERGM 48 (107)
T ss_pred HHHhHHHHHHHHHHHhchhhHHhhH------HH---HhHHHHHHHHHHHHhcCCH
Confidence 3455566667888999888888888 44 7889999988887766653
No 83
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=40.80 E-value=20 Score=31.50 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.1
Q ss_pred ccccCCCCcCHHHHHHHHHHHHhhH
Q 034525 5 CDLNLDGELDHEEFVKFIQKLTSDT 29 (92)
Q Consensus 5 lD~N~DgeIdfeEF~~fi~~l~~~~ 29 (92)
-|+-+||-|||+||.-|=.-++.++
T Consensus 83 aD~tKDglisf~eF~afe~~lC~pD 107 (694)
T KOG0751|consen 83 ADQTKDGLISFQEFRAFESVLCAPD 107 (694)
T ss_pred hhhcccccccHHHHHHHHhhccCch
Confidence 4788999999999999887777773
No 84
>PHA02692 hypothetical protein; Provisional
Probab=40.33 E-value=20 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhh
Q 034525 14 DHEEFVKFIQKLTSD 28 (92)
Q Consensus 14 dfeEF~~fi~~l~~~ 28 (92)
||+||++-++....+
T Consensus 19 DF~~Fi~vVksVLtD 33 (70)
T PHA02692 19 DFEEFLNIVRTVMTE 33 (70)
T ss_pred HHHHHHHHHHHHHcC
Confidence 899999999876555
No 85
>COG5562 Phage envelope protein [General function prediction only]
Probab=38.95 E-value=18 Score=26.21 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=16.9
Q ss_pred cccccCCCCcCHHHHHHHHHH
Q 034525 4 ECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 4 ~lD~N~DgeIdfeEF~~fi~~ 24 (92)
.++..+-||.+|+||..=+.+
T Consensus 80 al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 80 ALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHhcCCccHHHHHHHHHh
Confidence 356778899999999987754
No 86
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=38.73 E-value=21 Score=27.66 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=14.9
Q ss_pred cccccccCCCCcCHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQK 24 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~ 24 (92)
++++|+|+.|.|+..|+..-+..
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQ 152 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHH
Confidence 45677777777777776655543
No 87
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=37.55 E-value=31 Score=22.40 Aligned_cols=15 Identities=20% Similarity=0.640 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhh
Q 034525 14 DHEEFVKFIQKLTSD 28 (92)
Q Consensus 14 dfeEF~~fi~~l~~~ 28 (92)
||+||++-+.....+
T Consensus 19 Df~~Fi~vVksVltd 33 (72)
T PF12575_consen 19 DFNNFINVVKSVLTD 33 (72)
T ss_pred HHHHHHHHHHHHHcC
Confidence 899999999886655
No 88
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=35.41 E-value=49 Score=20.84 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=22.1
Q ss_pred ccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 3 KECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 3 k~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
+|+=+|.||+++=--|++|.+-+...
T Consensus 1 ~ELiTN~dGrLSTT~~iQffg~lv~a 26 (60)
T PF10841_consen 1 KELITNADGRLSTTAFIQFFGALVMA 26 (60)
T ss_pred CccccCCCCcEehHHHHHHHHHHHHH
Confidence 46778999999999999999887766
No 89
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=34.84 E-value=45 Score=27.07 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=20.0
Q ss_pred CcccccccCCCCcCHHHHHHHHHHHHhhHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFIQKLTSDTF 30 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi~~l~~~~~ 30 (92)
|+++.|.|.|+.|+=.|-.+-|++.+.+-|
T Consensus 106 iFsKvDVNtDrkisAkEmqrwImektaEHf 135 (362)
T KOG4251|consen 106 IFSKVDVNTDRKISAKEMQRWIMEKTAEHF 135 (362)
T ss_pred HHhhcccCccccccHHHHHHHHHHHHHHHH
Confidence 356667777777777777777766666544
No 90
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=34.51 E-value=55 Score=17.54 Aligned_cols=17 Identities=18% Similarity=0.618 Sum_probs=14.0
Q ss_pred CCCcCHHHHHHHHHHHH
Q 034525 10 DGELDHEEFVKFIQKLT 26 (92)
Q Consensus 10 DgeIdfeEF~~fi~~l~ 26 (92)
.|.|+++||..+..+..
T Consensus 2 ~~~i~~~~~~d~a~rv~ 18 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVN 18 (33)
T ss_pred CceecHHHHHHHHHHHH
Confidence 57899999999987743
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.32 E-value=55 Score=30.34 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=15.3
Q ss_pred ccccCCCCcCHHHHHHHH
Q 034525 5 CDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 5 lD~N~DgeIdfeEF~~fi 22 (92)
.|.|+||..|-.||---|
T Consensus 58 sDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 58 SDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred hhcCccccchHHHHHHHH
Confidence 589999999999996544
No 92
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=32.63 E-value=21 Score=29.88 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.2
Q ss_pred CcccccccCCCCcCHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKF 21 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~f 21 (92)
||..+|.|.|+.+|..|-..+
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I 275 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAI 275 (434)
T ss_pred hhhccccccccccCHHHhhhh
Confidence 678899999999998886543
No 93
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.23 E-value=46 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=17.2
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||+++|.+++..+...
T Consensus 14 ~~dg~id~~~~~~~i~~l~~~ 34 (289)
T PF00701_consen 14 NADGSIDEDALKRLIDFLIEA 34 (289)
T ss_dssp ETTSSB-HHHHHHHHHHHHHT
T ss_pred CCCcCcCHHHHHHHHHHHHHc
Confidence 568999999999999888766
No 94
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange. Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane
Probab=32.19 E-value=92 Score=26.81 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=37.1
Q ss_pred ccccccCCCCcC------HHHHHHHHHHHHhhHHHHhhhhh--hhhhhhhhhHHHhhhhccCCC
Q 034525 3 KECDLNLDGELD------HEEFVKFIQKLTSDTFIVVSQGL--LITLVVAPTVAMATKRATEGV 58 (92)
Q Consensus 3 k~lD~N~DgeId------feEF~~fi~~l~~~~~~~~~~~~--li~~~aaP~~A~~aKra~e~V 58 (92)
+++|.+.|.+++ .|+|..|++.+.++ +.+.+-+ ..|.++=|-=-+.+|+||=+-
T Consensus 177 ~~~d~~~D~~v~~~~r~~Le~FRaFLRsLmMH--~~VGTALGGV~TmVGEPQNLiIa~~agW~F 238 (515)
T PF06450_consen 177 DDHDHTDDSKVDELNREDLEQFRAFLRSLMMH--AAVGTALGGVMTMVGEPQNLIIAKQAGWDF 238 (515)
T ss_pred CccCCccchhhhhhhHHHHHHHHHHHHHHHHh--cccchhhcceeeecCCchhhhhhhhcCCCH
Confidence 356776666554 68999999999988 4333322 236677777778888888653
No 95
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=32.14 E-value=33 Score=25.22 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=28.7
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhHHHhhhhccCCCCc
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTSDTFIVVSQGLLITLVVAPTVAMATKRATEGVPH 60 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~~~~~~~~~~~li~~~aaP~~A~~aKra~e~VP~ 60 (92)
+.-+|.++||.|+++.--.-++ ++=.-|+=|++.|..|+-.+.
T Consensus 17 F~lfD~~gD~ki~~~q~gdvlR----------------alG~nPT~aeV~k~l~~~~~~ 59 (152)
T KOG0030|consen 17 FLLFDRTGDGKISGSQVGDVLR----------------ALGQNPTNAEVLKVLGQPKRR 59 (152)
T ss_pred HHHHhccCcccccHHHHHHHHH----------------HhcCCCcHHHHHHHHcCcccc
Confidence 4457888888888776543332 223348888888888776654
No 96
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=31.75 E-value=49 Score=25.73 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=17.3
Q ss_pred CCCCcCHHHHHHHHHHHHhh
Q 034525 9 LDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 9 ~DgeIdfeEF~~fi~~l~~~ 28 (92)
.||+|||+.+.+++..+...
T Consensus 18 ~dg~vD~~a~~~lv~~li~~ 37 (299)
T COG0329 18 EDGSVDEEALRRLVEFLIAA 37 (299)
T ss_pred CCCCcCHHHHHHHHHHHHHc
Confidence 36899999999999888776
No 97
>TIGR00774 NhaB Na+/H+ antiporter NhaB. These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent.
Probab=31.50 E-value=1.6e+02 Score=25.49 Aligned_cols=53 Identities=23% Similarity=0.311 Sum_probs=39.0
Q ss_pred ccccccCCCCc------CHHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhHHHhhhhcc
Q 034525 3 KECDLNLDGEL------DHEEFVKFIQKLTSDTFIVVSQGLLITLVVAPTVAMATKRAT 55 (92)
Q Consensus 3 k~lD~N~DgeI------dfeEF~~fi~~l~~~~~~~~~~~~li~~~aaP~~A~~aKra~ 55 (92)
+++|.++|.++ |-|+|..|++.+..+..--.+=.=..|.++-|.=.+.+...+
T Consensus 176 ~~~d~~~d~~~~~~~~~~l~~fr~fl~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~g 234 (515)
T TIGR00774 176 GDHDHTDDDTITELTRDDLENFRAFLRSLMMHAGVGTALGGVMTMVGEPQNLIIADQAG 234 (515)
T ss_pred hhcCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchHHHHHHHhC
Confidence 45666777744 677888888888877433344445678889999999999988
No 98
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=31.34 E-value=68 Score=18.61 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.3
Q ss_pred cccccCCCCcCHHHHHHHHHHHHhhH
Q 034525 4 ECDLNLDGELDHEEFVKFIQKLTSDT 29 (92)
Q Consensus 4 ~lD~N~DgeIdfeEF~~fi~~l~~~~ 29 (92)
+-|..+|+.+...-|..++++++...
T Consensus 6 rkdit~~ntltkrgfykligclvvmf 31 (41)
T PF13121_consen 6 RKDITKDNTLTKRGFYKLIGCLVVMF 31 (41)
T ss_pred EeeccCCCeeehhhHHHHHHHHHHHH
Confidence 44777899999999999999998873
No 99
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=29.80 E-value=44 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=20.1
Q ss_pred cccccccCCCCcCHHH---HHHHHHHHHhh
Q 034525 2 MKECDLNLDGELDHEE---FVKFIQKLTSD 28 (92)
Q Consensus 2 mk~lD~N~DgeIdfeE---F~~fi~~l~~~ 28 (92)
|..+|+|+++.|++.| |-.++.+..+.
T Consensus 339 F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~ 368 (421)
T KOG4578|consen 339 FNQLDKNSNNDIERREWKPFKRVLLKKSKP 368 (421)
T ss_pred eeeecccccCccchhhcchHHHHHHhhccH
Confidence 6789999999999888 55555554443
No 100
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=29.72 E-value=40 Score=28.73 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=13.6
Q ss_pred cccccccCCCCcCHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQ 23 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~ 23 (92)
++..|+++++.|+++||..++.
T Consensus 124 ~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 124 FEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHhccCCCeeeccHHHHhhhh
Confidence 4555666666666666666654
No 101
>PHA03054 IMV membrane protein; Provisional
Probab=28.82 E-value=59 Score=21.18 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=13.6
Q ss_pred CcCHHHHHHHHHHHHhh
Q 034525 12 ELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 12 eIdfeEF~~fi~~l~~~ 28 (92)
+-||+||++-++....+
T Consensus 17 d~Df~~Fi~vV~sVl~d 33 (72)
T PHA03054 17 EDDLTDFIEIVKSVLSD 33 (72)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 56899999999876555
No 102
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.54 E-value=61 Score=25.15 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=18.2
Q ss_pred ccCCCCcCHHHHHHHHHHHHhh
Q 034525 7 LNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 7 ~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
.|.||+||++.+.+++..+...
T Consensus 20 ~~~~g~iD~~~l~~lv~~li~~ 41 (309)
T cd00952 20 WRATDTVDLDETARLVERLIAA 41 (309)
T ss_pred cccCCCcCHHHHHHHHHHHHHc
Confidence 3457999999999999887765
No 103
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=28.28 E-value=63 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=16.7
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 10 ~~dg~iD~~~~~~~i~~l~~~ 30 (281)
T cd00408 10 TADGEVDLDALRRLVEFLIEA 30 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 456899999998888877664
No 104
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=27.50 E-value=45 Score=20.99 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=27.3
Q ss_pred HhhHHHHhhhhhhhhhhhhhhHHHhhhhccCCCCccc-hhhhhcC
Q 034525 26 TSDTFIVVSQGLLITLVVAPTVAMATKRATEGVPHVG-KVVQRVP 69 (92)
Q Consensus 26 ~~~~~~~~~~~~li~~~aaP~~A~~aKra~e~VP~vg-~~v~~vP 69 (92)
+...+.++.-++...+.|+=..+++- ++++|.+. .+++|+|
T Consensus 6 t~~~~~~~~p~~a~wG~aa~~~v~~f---~~~vPr~q~dil~KIP 47 (64)
T PF09796_consen 6 TPKTLTRYGPNLALWGGAAGAAVLFF---TSGVPRFQRDILQKIP 47 (64)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcHHHHHHHHhCC
Confidence 34445566677777777776666654 45888887 4578887
No 105
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=27.38 E-value=49 Score=24.76 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=17.4
Q ss_pred cccccCCCCcCHHHHHHHHHHHH
Q 034525 4 ECDLNLDGELDHEEFVKFIQKLT 26 (92)
Q Consensus 4 ~lD~N~DgeIdfeEF~~fi~~l~ 26 (92)
-.|+|+||-|+++.-..+++.+-
T Consensus 40 ~mDqnrDG~IdkeDL~d~~aSlG 62 (171)
T KOG0031|consen 40 LMDQNRDGFIDKEDLRDMLASLG 62 (171)
T ss_pred HHhccCCCcccHHHHHHHHHHcC
Confidence 46899999999887777765543
No 106
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=27.00 E-value=33 Score=21.03 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.1
Q ss_pred cccccccCCCCcCHHHHHHHHHHHHhh
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l~~~ 28 (92)
++++-. +.+.++.++|.+|+.+.-.+
T Consensus 6 f~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 6 FRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred HHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 455633 57899999999999876555
No 107
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.64 E-value=69 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.0
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 11 ~~~g~iD~~~~~~~i~~l~~~ 31 (285)
T TIGR00674 11 KEDGSVDFAALEKLIDFQIEN 31 (285)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 456899999999999887654
No 108
>PLN02417 dihydrodipicolinate synthase
Probab=26.18 E-value=72 Score=24.30 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=17.4
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 14 ~~~g~iD~~~~~~~i~~l~~~ 34 (280)
T PLN02417 14 LPDGRFDLEAYDSLVNMQIEN 34 (280)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 457899999999999887765
No 109
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.88 E-value=74 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=16.2
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 13 ~~dg~iD~~~~~~~i~~l~~~ 33 (284)
T cd00950 13 KDDGSVDFDALERLIEFQIEN 33 (284)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 456789988888888777654
No 110
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=25.30 E-value=75 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=17.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 13 ~~dg~iD~~~l~~lv~~~~~~ 33 (294)
T TIGR02313 13 KRNGDIDEEALRELIEFQIEG 33 (294)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 566899999999999887765
No 111
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=24.81 E-value=95 Score=23.41 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=26.3
Q ss_pred CCcCHHHHHHHHHHHHhhHHHHhhhhhhhhhhh
Q 034525 11 GELDHEEFVKFIQKLTSDTFIVVSQGLLITLVV 43 (92)
Q Consensus 11 geIdfeEF~~fi~~l~~~~~~~~~~~~li~~~a 43 (92)
|+++++||-.++..+.......+=|.++.+++.
T Consensus 40 ~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~ 72 (252)
T PF12767_consen 40 GKLSKEEFDKECRRILGRENVHLHNQLILSILK 72 (252)
T ss_pred hccCHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 789999999999998877666677777776654
No 112
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.77 E-value=78 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=15.9
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 13 ~~dg~iD~~~~~~~i~~l~~~ 33 (288)
T cd00954 13 DENGEINEDVLRAIVDYLIEK 33 (288)
T ss_pred CCCCCCCHHHHHHHHHHHHhc
Confidence 456788888888888776554
No 113
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=24.19 E-value=38 Score=26.55 Aligned_cols=22 Identities=23% Similarity=0.521 Sum_probs=18.4
Q ss_pred CcccccccCCCCcCHHHHHHHH
Q 034525 1 MMKECDLNLDGELDHEEFVKFI 22 (92)
Q Consensus 1 imk~lD~N~DgeIdfeEF~~fi 22 (92)
.++.||.|+||-|...|+..-+
T Consensus 227 f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 227 FFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred hhhcccCCCCCceeHHHhhccc
Confidence 3688999999999999986543
No 114
>PLN00090 photosystem II reaction center M protein; Provisional
Probab=23.97 E-value=1.7e+02 Score=20.42 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=25.9
Q ss_pred HhhhhhhhhhhhhhhHHHhhhhccCCCCccchhhhhcCch-----------------hHHHHHHHHHHHHhcccC
Q 034525 32 VVSQGLLITLVVAPTVAMATKRATEGVPHVGKVVQRVPNS-----------------IYASLVTLAVVWFQNSGR 89 (92)
Q Consensus 32 ~~~~~~li~~~aaP~~A~~aKra~e~VP~vg~~v~~vP~~-----------------v~~~~~T~~~v~~~~~~~ 89 (92)
|..--+..+.+++|..||= +.|+.+|+- +++|.+-++.+.+|..++
T Consensus 40 k~~~a~~~aa~a~pafa~d------------sivealpt~t~~~EVNiLafIATaLFIlIPTaFLLILYVQT~Sr 102 (113)
T PLN00090 40 KAAGAAIPAAIAAPAFALD------------SIVEALPTNTLALEVQFGAYLAVALGTFLPCLFLINLFIQTESR 102 (113)
T ss_pred HHhhcccHHHhcccHhHHH------------HHHHHcCccceeeehHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3334444477777777763 456666653 345555566666665443
No 115
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=23.85 E-value=59 Score=23.16 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=21.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhhHH-HHhhhhhhhhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSDTF-IVVSQGLLITL 41 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~~~-~~~~~~~li~~ 41 (92)
|.++.|||+-|..||......++ ..+.+-++...
T Consensus 44 ~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF 78 (138)
T PF14513_consen 44 NPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSF 78 (138)
T ss_dssp EETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34569999999999988766554 44455555543
No 116
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=23.63 E-value=56 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.4
Q ss_pred CCCcCHHHHHHHHHHH
Q 034525 10 DGELDHEEFVKFIQKL 25 (92)
Q Consensus 10 DgeIdfeEF~~fi~~l 25 (92)
-+.|+||||+.+=.+.
T Consensus 33 PmSIS~eeY~~LH~~f 48 (81)
T PF10891_consen 33 PMSISFEEYIRLHIKF 48 (81)
T ss_pred ccEeeHHHHHHHHHHH
Confidence 3679999999886553
No 117
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=23.59 E-value=86 Score=23.70 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=16.5
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 14 ~~dg~iD~~~l~~~i~~l~~~ 34 (292)
T PRK03170 14 KEDGSVDFAALRKLVDYLIAN 34 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 456889999998888877654
No 118
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=23.27 E-value=1.7e+02 Score=24.15 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=37.8
Q ss_pred CCcCHHHHHHHHHHHHhh---HH-HHhhhhhhhhhhhhhhHHHh----hhhcc-CCCCccchhhhhcCchhHHH
Q 034525 11 GELDHEEFVKFIQKLTSD---TF-IVVSQGLLITLVVAPTVAMA----TKRAT-EGVPHVGKVVQRVPNSIYAS 75 (92)
Q Consensus 11 geIdfeEF~~fi~~l~~~---~~-~~~~~~~li~~~aaP~~A~~----aKra~-e~VP~vg~~v~~vP~~v~~~ 75 (92)
+|..+....+++++...- .+ ...---..|=++.+|.+=-+ +|++. +-+|++|+.+.-+-+.+.-+
T Consensus 223 ~e~~lskLa~llk~~~~w~lg~~ltif~Gi~~IQG~~~~~~D~v~~ktakf~v~~fIPvVG~~~sda~~tV~gs 296 (381)
T TIGR02829 223 DEYKIDKLSKFLKQISIGSQGVFLTIFLGVITIQGITAAVADGVTVKTAKFAVGNFVPVVGKMLTDAVDTVAGA 296 (381)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCCccchHHHHHHHHHHHH
Confidence 445555555555554333 22 22222333456777877655 44444 88999999987776665543
No 119
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=23.17 E-value=60 Score=27.17 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.7
Q ss_pred cccccccCCCCcCHHHHHHHHHHH
Q 034525 2 MKECDLNLDGELDHEEFVKFIQKL 25 (92)
Q Consensus 2 mk~lD~N~DgeIdfeEF~~fi~~l 25 (92)
+++.|+..||+|.|++|..|+...
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhC
Confidence 567788999999999999999753
No 120
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=22.31 E-value=93 Score=23.96 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 20 ~~dg~iD~~~l~~li~~l~~~ 40 (303)
T PRK03620 20 DADGSFDEAAYREHLEWLAPY 40 (303)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 567899999999999877665
No 121
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=22.11 E-value=97 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.2
Q ss_pred cCCCCcCHHHHHHHHHHHHh
Q 034525 8 NLDGELDHEEFVKFIQKLTS 27 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~ 27 (92)
|.||+||++.+.+++..+..
T Consensus 16 ~~dg~iD~~~~~~li~~l~~ 35 (293)
T PRK04147 16 DEDGQIDEQGLRRLVRFNIE 35 (293)
T ss_pred CCCCCcCHHHHHHHHHHHHh
Confidence 45688998888888888776
No 122
>PHA02819 hypothetical protein; Provisional
Probab=22.01 E-value=67 Score=20.85 Aligned_cols=17 Identities=12% Similarity=0.479 Sum_probs=13.2
Q ss_pred CcCHHHHHHHHHHHHhh
Q 034525 12 ELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 12 eIdfeEF~~fi~~l~~~ 28 (92)
+-||+||++-++....+
T Consensus 17 DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 17 DDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 45799999999875544
No 123
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=21.79 E-value=1.7e+02 Score=24.90 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=42.7
Q ss_pred ccccccCCCCcC------HHHHHHHHHHHHhhHHHHhhhhh--hhhhhhhhhHHHhhhhccCCCCccchh-hhhcCchh
Q 034525 3 KECDLNLDGELD------HEEFVKFIQKLTSDTFIVVSQGL--LITLVVAPTVAMATKRATEGVPHVGKV-VQRVPNSI 72 (92)
Q Consensus 3 k~lD~N~DgeId------feEF~~fi~~l~~~~~~~~~~~~--li~~~aaP~~A~~aKra~e~VP~vg~~-v~~vP~~v 72 (92)
+++|.-.|.+|+ .|+|..|++.+.++ +-+.+-+ ..+.++-|-=-+.+|.||=+- |.. ++-.|-.+
T Consensus 177 ~~~D~~~D~~i~e~~~~~LE~fRaFLRSLmMH--agVGTALGGVmTmVGEPQNLiIa~~AgW~F---~eFflrm~PVt~ 250 (516)
T COG3067 177 DDTDITDDSHIDEHYKVVLEQFRAFLRSLMMH--AGVGTALGGVMTMVGEPQNLIIAKQAGWHF---GEFFLRMAPVTV 250 (516)
T ss_pred cccCccccccCChHHHHHHHHHHHHHHHHHHh--hccchhhcceeeeccCchhhhhhhhccccH---HHHHHHhcCchh
Confidence 466777777776 68899999998888 3322221 346677788888899988763 333 44445443
No 124
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.55 E-value=98 Score=23.64 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.4
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 18 ~~dg~iD~~~l~~li~~l~~~ 38 (296)
T TIGR03249 18 DADGSFDEAAYRENIEWLLGY 38 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHhc
Confidence 456899999999999887765
No 125
>PRK12320 hypothetical protein; Provisional
Probab=21.46 E-value=1.6e+02 Score=26.17 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhhhhhhhhHHHhhhhccCCCCccch
Q 034525 15 HEEFVKFIQKLTSDTFIVVSQGLLITLVVAPTVAMATKRATEGVPHVGK 63 (92)
Q Consensus 15 feEF~~fi~~l~~~~~~~~~~~~li~~~aaP~~A~~aKra~e~VP~vg~ 63 (92)
.++.+.+++....+ +=+.+.+.+.-.+++++++..-.||..+|++|.
T Consensus 462 l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 508 (699)
T PRK12320 462 LEVRIRLLRDRIHQ--GWILTVLWVIDTGVTAATLEHTRAGSAVSGGGM 508 (699)
T ss_pred HHHHHHHHHHhhhH--HHHHHHHHHHHhhhHHHHHHHhhccCCCCCcCc
Confidence 57778888777777 555555555434478888999999999999974
No 126
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=20.08 E-value=1.1e+02 Score=23.33 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.3
Q ss_pred cCCCCcCHHHHHHHHHHHHhh
Q 034525 8 NLDGELDHEEFVKFIQKLTSD 28 (92)
Q Consensus 8 N~DgeIdfeEF~~fi~~l~~~ 28 (92)
|.||+||++.+.+++..+...
T Consensus 13 ~~dg~iD~~~l~~l~~~l~~~ 33 (289)
T cd00951 13 DADGSFDEDAYRAHVEWLLSY 33 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHHc
Confidence 556899999999999887765
Done!