BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034528
         (92 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WII|A Chain A, Solution Structure Of Rsgi Ruh-025, A Duf701 Domain From
          Mouse Cdna
          Length = 85

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 19 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE 78
          L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE
Sbjct: 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACE 79


>pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
 pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
 pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
          Length = 1022

 Score = 28.5 bits (62), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 37  RIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDE 76
           ++ M+  IG+ + N  Q  FS    AL  P++ + +W+ E
Sbjct: 429 KVKMRQAIGDRLINDLQRQFSEQKHALNRPVE-FRQWVYE 467


>pdb|3FAY|A Chain A, Crystal Structure Of The Gap-Related Domain Of Iqgap1
          Length = 387

 Score = 26.2 bits (56), Expect = 5.3,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 64  TEPIDIYSEWIDECE 78
           T+P+DIY  W+++ E
Sbjct: 131 TDPVDIYKSWVNQXE 145


>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
 pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
          Length = 591

 Score = 25.8 bits (55), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 31 GTSVECRIDMKNLIGEAICNICQESFSTTITALT 64
          G +VEC I    + G A    C+E FS+    LT
Sbjct: 50 GAAVECVISDTCIAGMAEAAACEEKFSSQNVGLT 83


>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
 pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
           Hyperthermophilic Archaeal Virus In The Absence Of Dna
          Length = 129

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 23  FSCPFC--NHGTSVECRIDMKNLIGEAICNICQESFSTTITAL 63
           F CP C     +SV  +  ++      +C +C++ F++T +AL
Sbjct: 75  FVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTDSAL 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,404,957
Number of Sequences: 62578
Number of extensions: 75084
Number of successful extensions: 183
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)